Query psy403
Match_columns 233
No_of_seqs 178 out of 1698
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:35:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 6.1E-38 1.3E-42 267.6 12.2 146 1-233 224-371 (372)
2 cd02698 Peptidase_C1A_Cathepsi 100.0 1.3E-34 2.8E-39 244.5 14.3 157 2-232 77-237 (239)
3 PTZ00021 falcipain-2; Provisio 100.0 1.5E-34 3.3E-39 262.9 13.9 152 2-233 334-488 (489)
4 KOG1543|consensus 100.0 5.7E-34 1.2E-38 249.7 14.7 143 1-232 179-323 (325)
5 PTZ00049 cathepsin C-like prot 100.0 4.9E-34 1.1E-38 265.3 14.3 190 1-232 462-675 (693)
6 cd02248 Peptidase_C1A Peptidas 100.0 2E-33 4.4E-38 232.1 15.3 142 2-231 69-210 (210)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 1.2E-33 2.7E-38 239.1 14.3 150 2-230 79-239 (243)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 3.3E-33 7.2E-38 235.5 14.4 155 2-229 75-234 (236)
9 PTZ00203 cathepsin L protease; 100.0 5.6E-33 1.2E-37 245.2 14.7 143 2-232 194-339 (348)
10 PTZ00200 cysteine proteinase; 100.0 5.4E-33 1.2E-37 251.6 13.9 142 1-233 302-445 (448)
11 PTZ00364 dipeptidyl-peptidase 100.0 1E-32 2.3E-37 253.5 14.8 162 1-229 284-455 (548)
12 PF00112 Peptidase_C1: Papain 100.0 8.2E-33 1.8E-37 228.9 11.3 147 2-232 72-219 (219)
13 KOG1544|consensus 100.0 8.2E-29 1.8E-33 209.7 9.4 169 1-228 281-455 (470)
14 PTZ00462 Serine-repeat antigen 99.9 2.3E-26 5E-31 219.9 13.7 165 3-232 604-780 (1004)
15 cd02619 Peptidase_C1 C1 Peptid 99.9 3.1E-25 6.8E-30 183.8 13.1 140 2-225 72-218 (223)
16 smart00645 Pept_C1 Papain fami 99.9 1.5E-23 3.2E-28 169.0 10.7 78 96-228 93-170 (174)
17 cd00585 Peptidase_C1B Peptidas 99.4 1.7E-13 3.7E-18 124.1 7.8 107 73-217 288-399 (437)
18 PTZ00364 dipeptidyl-peptidase 99.3 4E-12 8.6E-17 117.9 7.3 50 122-175 400-451 (548)
19 COG4870 Cysteine protease [Pos 99.3 5.7E-12 1.2E-16 109.6 7.8 54 81-136 223-276 (372)
20 PTZ00203 cathepsin L protease; 99.2 7.1E-12 1.5E-16 111.1 3.6 144 28-185 125-294 (348)
21 PTZ00049 cathepsin C-like prot 99.2 2.1E-11 4.5E-16 114.8 5.0 50 122-175 616-668 (693)
22 smart00645 Pept_C1 Papain fami 98.8 1E-08 2.2E-13 82.6 4.8 27 159-185 101-127 (174)
23 cd02698 Peptidase_C1A_Cathepsi 98.7 9.9E-09 2.1E-13 86.7 4.8 58 127-185 126-186 (239)
24 KOG1542|consensus 98.7 9.8E-10 2.1E-14 95.1 -1.8 146 28-185 156-324 (372)
25 KOG1543|consensus 98.7 1.8E-08 3.9E-13 88.8 4.7 158 28-217 108-291 (325)
26 cd02621 Peptidase_C1A_Cathepsi 98.6 3.7E-08 8.1E-13 83.3 4.8 28 144-171 140-168 (243)
27 cd02620 Peptidase_C1A_Cathepsi 98.6 3.3E-08 7.1E-13 83.4 4.3 41 144-185 151-192 (236)
28 cd02248 Peptidase_C1A Peptidas 98.6 1.7E-07 3.6E-12 77.1 7.9 70 117-186 93-167 (210)
29 PTZ00462 Serine-repeat antigen 98.3 4.3E-07 9.2E-12 88.7 3.5 44 146-189 689-733 (1004)
30 PTZ00200 cysteine proteinase; 98.3 4.9E-07 1.1E-11 82.8 3.2 36 139-175 402-437 (448)
31 PTZ00021 falcipain-2; Provisio 98.3 5.6E-07 1.2E-11 82.9 3.1 36 139-174 444-479 (489)
32 PF00112 Peptidase_C1: Papain 98.2 9.3E-07 2E-11 72.7 3.8 61 127-187 109-175 (219)
33 PF03051 Peptidase_C1_2: Pepti 98.2 1.4E-06 3.1E-11 79.4 5.2 41 176-216 358-399 (438)
34 PF03051 Peptidase_C1_2: Pepti 98.1 9.5E-06 2.1E-10 74.0 8.3 76 84-161 301-397 (438)
35 cd02619 Peptidase_C1 C1 Peptid 97.9 1.2E-05 2.7E-10 66.1 4.6 27 159-185 148-179 (223)
36 cd00585 Peptidase_C1B Peptidas 97.5 0.00011 2.3E-09 67.2 4.6 21 3-24 140-160 (437)
37 KOG1544|consensus 97.3 0.0001 2.2E-09 63.8 1.8 45 122-166 399-447 (470)
38 COG3579 PepC Aminopeptidase C 96.6 0.005 1.1E-07 53.9 5.9 36 124-159 361-397 (444)
39 COG3579 PepC Aminopeptidase C 95.5 0.0053 1.1E-07 53.8 1.1 40 176-215 360-400 (444)
40 COG4870 Cysteine protease [Pos 92.9 0.1 2.2E-06 46.3 3.4 44 175-218 262-314 (372)
41 PF13529 Peptidase_C39_2: Pept 91.1 0.5 1.1E-05 35.3 5.0 60 78-149 85-144 (144)
42 PF09778 Guanylate_cyc_2: Guan 85.9 3.1 6.8E-05 34.5 6.6 64 80-148 111-181 (212)
43 PF05543 Peptidase_C47: Stapho 83.2 4.8 0.0001 32.3 6.3 55 81-149 90-144 (175)
44 PF14399 Transpep_BrtH: NlpC/p 73.9 11 0.00023 32.7 6.4 56 82-147 78-133 (317)
45 COG4990 Uncharacterized protei 65.2 19 0.00042 29.1 5.4 52 75-149 116-167 (195)
46 PF06658 DUF1168: Protein of u 57.1 3.6 7.9E-05 31.9 0.1 25 140-164 18-43 (142)
47 KOG4128|consensus 53.6 1.9 4.2E-05 38.1 -2.1 40 177-216 371-413 (457)
48 PF12385 Peptidase_C70: Papain 49.1 41 0.00088 26.7 4.7 38 81-135 97-134 (166)
49 PF13529 Peptidase_C39_2: Pept 46.6 17 0.00037 26.7 2.3 23 176-202 122-144 (144)
50 cd02549 Peptidase_C39A A sub-f 36.5 1.2E+02 0.0027 22.2 5.8 34 85-134 70-103 (141)
51 PF01640 Peptidase_C10: Peptid 31.8 1.9E+02 0.0041 23.3 6.4 51 83-159 141-191 (192)
52 PF05543 Peptidase_C47: Stapho 22.5 1.1E+02 0.0023 24.7 3.2 30 176-205 118-147 (175)
No 1
>KOG1542|consensus
Probab=100.00 E-value=6.1e-38 Score=267.56 Aligned_cols=146 Identities=39% Similarity=0.806 Sum_probs=123.0
Q ss_pred ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG 80 (233)
Q Consensus 1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~ 80 (233)
++.||+|+++..||.+|++|||++.+ ...|...+...++.|.+|..|+.
T Consensus 224 ~~nA~~~~~~~gGL~~E~dYPY~g~~------------------------------~~~C~~~~~~~~v~I~~f~~l~~- 272 (372)
T KOG1542|consen 224 MDNAFKYIKKAGGLEKEKDYPYTGKK------------------------------GNQCHFDKSKIVVSIKDFSMLSN- 272 (372)
T ss_pred hhHHHHHHHHhCCccccccCCccccC------------------------------CCccccchhhceEEEeccEecCC-
Confidence 56899997777899999999999982 33899988888999999999965
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEeC--CCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE--PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 158 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~--~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~ 158 (233)
+|++|++.|.++|||+|+|++ ..++.|++||..+ ..|++..++|+|+|||||.
T Consensus 273 nE~~ia~wLv~~GPi~vgiNa--~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~----------------------- 327 (372)
T KOG1542|consen 273 NEDQIAAWLVTFGPLSVGINA--KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGS----------------------- 327 (372)
T ss_pred CHHHHHHHHHhcCCeEEEEch--HHHHHhcccccCCCcccCCccccCceEEEEeecC-----------------------
Confidence 999999999999999999998 4799999999976 4576544555555555554
Q ss_pred ceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233 (233)
Q Consensus 159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~ 233 (233)
+....||||||||||++|||+||+|+.||. |.|||++.++-+.+
T Consensus 328 ------------------------------~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~-N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 328 ------------------------------SGYEKPYWIVKNSWGTSWGEKGYYKLCRGS-NACGIADMVSSAAV 371 (372)
T ss_pred ------------------------------CCCCCceEEEECCccccccccceEEEeccc-cccccccchhhhhc
Confidence 334688999999999999999999999997 99999998876653
No 2
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.3e-34 Score=244.49 Aligned_cols=157 Identities=27% Similarity=0.562 Sum_probs=116.4
Q ss_pred hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403 2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD 81 (233)
Q Consensus 2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~ 81 (233)
..||+|++ ++|+++|++|||+..++. |...+.|.+|.. ...|...+....+++.+|..++ +
T Consensus 77 ~~a~~~~~-~~Gl~~e~~yPY~~~~~~---------C~~~~~~~~c~~-------~~~c~~~~~~~~~~i~~~~~~~--~ 137 (239)
T cd02698 77 GGVYEYAH-KHGIPDETCNPYQAKDGE---------CNPFNRCGTCNP-------FGECFAIKNYTLYFVSDYGSVS--G 137 (239)
T ss_pred HHHHHHHH-HcCcCCCCeeCCcCCCCC---------CcCCCCCCCccc-------CcccccccccceEEeeeceecC--C
Confidence 57999996 579999999999876322 222223322221 2455544444557888888774 6
Q ss_pred HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161 (233)
Q Consensus 82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~ 161 (233)
+++||++|+++|||+++|++ .++|+.|++|||....|. ...+|+|+|||||+
T Consensus 138 ~~~i~~~l~~~GPV~v~i~~-~~~f~~Y~~GIy~~~~~~-~~~~HaV~IVGyG~-------------------------- 189 (239)
T cd02698 138 RDKMMAEIYARGPISCGIMA-TEALENYTGGVYKEYVQD-PLINHIISVAGWGV-------------------------- 189 (239)
T ss_pred HHHHHHHHHHcCCEEEEEEe-cccccccCCeEEccCCCC-CcCCeEEEEEEEEe--------------------------
Confidence 88999999999999999999 469999999999865553 34556666666654
Q ss_pred ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC----CCcccccccccccc
Q psy403 162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR----ENNCGVASSASFPL 232 (233)
Q Consensus 162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~----~~~cgi~~~~~~~~ 232 (233)
+.++.+|||||||||++|||+|||||+|+. .|+||||+++.|+.
T Consensus 190 ---------------------------~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~ 237 (239)
T cd02698 190 ---------------------------DENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD 237 (239)
T ss_pred ---------------------------cCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence 333567888888889999999999999983 17999999998864
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.5e-34 Score=262.86 Aligned_cols=152 Identities=33% Similarity=0.708 Sum_probs=118.2
Q ss_pred hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403 2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD 81 (233)
Q Consensus 2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~ 81 (233)
..||+|+++++||++|++|||++.+ ++.|........+++.+|..++
T Consensus 334 ~~Af~yi~~~gGl~tE~~YPY~~~~------------------------------~~~C~~~~~~~~~~i~~y~~i~--- 380 (489)
T PTZ00021 334 PNAFEDMIELGGLCSEDDYPYVSDT------------------------------PELCNIDRCKEKYKIKSYVSIP--- 380 (489)
T ss_pred HhhhhhhhhccccCcccccCccCCC------------------------------CCccccccccccceeeeEEEec---
Confidence 5799999777799999999998761 2445544344557888998885
Q ss_pred HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161 (233)
Q Consensus 82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~ 161 (233)
+++|+++|+++|||+|+|++. ++|++|++|||.+ .|.. ..+|||+|||||+ +++.+...
T Consensus 381 ~~~lk~al~~~GPVsv~i~a~-~~f~~YkgGIy~~-~C~~-~~nHAVlIVGYG~-e~~~~~~~----------------- 439 (489)
T PTZ00021 381 EDKFKEAIRFLGPISVSIAVS-DDFAFYKGGIFDG-ECGE-EPNHAVILVGYGM-EEIYNSDT----------------- 439 (489)
T ss_pred HHHHHHHHHhcCCeEEEEEee-cccccCCCCcCCC-CCCC-ccceEEEEEEecC-cCCccccc-----------------
Confidence 578999999999999999994 6899999999974 6864 4788888888886 21111000
Q ss_pred ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---CccccccccccccC
Q psy403 162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPLV 233 (233)
Q Consensus 162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~~ 233 (233)
....+.+|||||||||++|||+|||||+|+.+ |.|||++.+.||++
T Consensus 440 --------------------------~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 440 --------------------------KKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLI 488 (489)
T ss_pred --------------------------ccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence 00124689999999999999999999999863 58999999999985
No 4
>KOG1543|consensus
Probab=100.00 E-value=5.7e-34 Score=249.67 Aligned_cols=143 Identities=47% Similarity=0.908 Sum_probs=118.4
Q ss_pred ChhHHHHHHhCCCcCC-CCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCC
Q psy403 1 MDQAFQYIKDNHGIDT-ESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPE 79 (233)
Q Consensus 1 ~~~a~~y~~~~~Gi~~-e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~ 79 (233)
|..||+|++++ |+++ +++|||.+. ...|........+.+.+++.++.
T Consensus 179 ~~~A~~yi~~~-G~~t~~~~Ypy~~~-------------------------------~~~C~~~~~~~~~~~~~~~~~~~ 226 (325)
T KOG1543|consen 179 PKNAFKYIKKN-GGVTECENYPYIGK-------------------------------DGTCKSNKKDKTVTIKGFYNVPA 226 (325)
T ss_pred HHHHHHHHHHh-CCCCCCcCCCCcCC-------------------------------CCCccCCCccceeEeeeeeecCc
Confidence 46899999755 7777 999999988 55777766667788889998876
Q ss_pred CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403 80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI 159 (233)
Q Consensus 80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~ 159 (233)
+|++||.+|+++|||+|+|++. .+|+.|++|||.++.|.....
T Consensus 227 -~e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~GVy~~~~~~~~~~----------------------------------- 269 (325)
T KOG1543|consen 227 -NEEAIAEAVAKNGPVSVAIDAY-EDFSLYKGGVYAEEKGDDKEG----------------------------------- 269 (325)
T ss_pred -CHHHHHHHHHhcCCeEEEEeeh-hhhhhccCceEeCCCCCCCCC-----------------------------------
Confidence 5999999999999999999995 599999999999877753234
Q ss_pred eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccc-cc
Q psy403 160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASF-PL 232 (233)
Q Consensus 160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~-~~ 232 (233)
+|||+|||||+ .++.+|||||||||++|||+|||||.|++ +.|+|++.++| |+
T Consensus 270 ------------------~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~-~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 270 ------------------DHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGV-NKCGIASEASYGPI 323 (325)
T ss_pred ------------------CceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCC-CchhhhcccccCCC
Confidence 45555555555 45678888888889999999999999998 89999999999 65
No 5
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=265.33 Aligned_cols=190 Identities=25% Similarity=0.469 Sum_probs=121.6
Q ss_pred ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhh-hhhhhhhcccCCcccc-ccCC------CCCcCCCCCcceEec
Q psy403 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRL-CYLLTICHKRSNQVTV-TSGD------DNCRYKRAKSGAVDR 72 (233)
Q Consensus 1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~-c~~~~~C~~~~~~~~~-~~~~------~~C~~~~~~~~~~i~ 72 (233)
+..||+|++ ++||++|+||||++..+.+|....... +.....+....+++.+ +.+. ..|.......++.++
T Consensus 462 ~~~A~kya~-~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k 540 (693)
T PTZ00049 462 PYLVSKMAK-LQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAK 540 (693)
T ss_pred HHHHHHHHH-HCCCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeee
Confidence 357999996 569999999999976433321100000 0000000000000000 0001 112222333445566
Q ss_pred eEEEcC-------CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCC------CCCCCCCCeeEEEeeeeecCCC
Q psy403 73 GYVDIP-------EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP------ECNSTQLDHAVLVVGYGTDENG 139 (233)
Q Consensus 73 ~~~~~~-------~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~------~c~~~~~~Hav~ivGyg~~~~~ 139 (233)
+|..+. ..++++||++|+++|||+|+|++ .++|++|++|||... .|......|.
T Consensus 541 ~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda-~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~------------ 607 (693)
T PTZ00049 541 DYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEA-SPDFYDYADGVYYVEDFPHARRCTVDLPKHN------------ 607 (693)
T ss_pred eeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEe-chhhhcCCCccccCcccccccccCCcccccc------------
Confidence 665542 24799999999999999999999 468999999999853 3642211110
Q ss_pred CceeEEeecCCccccccccceeccCCccccCCCccccccceeEEEEeecCC-CC--cceEEEeccCCCCCCCCceEEEEe
Q psy403 140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NG--NDYWLVKNSWNTTWGDEGYIKMAR 216 (233)
Q Consensus 140 ~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~--~~yWiv~nswg~~WG~~Gy~~i~r 216 (233)
..| .-++| +.+||||+|||||++. ++ .+|||||||||++|||+|||||+|
T Consensus 608 -~~~-~~~G~-------------------------e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~R 660 (693)
T PTZ00049 608 -GVY-NITGW-------------------------EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIR 660 (693)
T ss_pred -ccc-ccccc-------------------------ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEc
Confidence 000 01233 5689999999999864 45 489999999999999999999999
Q ss_pred cCCCcccccccccccc
Q psy403 217 NRENNCGVASSASFPL 232 (233)
Q Consensus 217 ~~~~~cgi~~~~~~~~ 232 (233)
+. |+|||++++.|++
T Consensus 661 G~-N~CGIEs~a~~~~ 675 (693)
T PTZ00049 661 GK-NFSGIESQSLFIE 675 (693)
T ss_pred CC-CccCCccceeEEe
Confidence 97 9999999998864
No 6
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2e-33 Score=232.07 Aligned_cols=142 Identities=59% Similarity=1.124 Sum_probs=118.2
Q ss_pred hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403 2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD 81 (233)
Q Consensus 2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~ 81 (233)
..||++++ ++|+++|++|||... ...|........+++.+|..++..+
T Consensus 69 ~~a~~~~~-~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~i~~~~ 116 (210)
T cd02248 69 DNAFEYVK-NGGLASESDYPYTGK-------------------------------DGTCKYNSSKVGAKITGYSNVPPGD 116 (210)
T ss_pred HHhHHHHH-HCCcCccccCCccCC-------------------------------CCCccCCCCcccEEEeeEEEcCCCc
Confidence 46899885 679999999999876 4456554446678999999997767
Q ss_pred HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161 (233)
Q Consensus 82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~ 161 (233)
+++||++|+++|||+++|.+ .++|+.|++|||..+.|.....+|||+||||++ +
T Consensus 117 ~~~ik~~l~~~gPV~~~~~~-~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~-~------------------------ 170 (210)
T cd02248 117 EEALKAALANYGPVSVAIDA-SSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGT-E------------------------ 170 (210)
T ss_pred HHHHHHHHhhcCCEEEEEec-CcccccCCCCceeCCCCCCCcCCEEEEEEEEee-c------------------------
Confidence 99999999999999999998 579999999999877665455678888888876 2
Q ss_pred ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccc
Q psy403 162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231 (233)
Q Consensus 162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~ 231 (233)
.+.+|||||||||++||++||+||.++. +.|||+..+.||
T Consensus 171 -----------------------------~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-~~cgi~~~~~~~ 210 (210)
T cd02248 171 -----------------------------NGVDYWIVKNSWGTSWGEKGYIRIARGS-NLCGIASYASYP 210 (210)
T ss_pred -----------------------------CCceEEEEEcCCCCccccCcEEEEEcCC-CccCceeeeecC
Confidence 2456777777779999999999999996 899999998886
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.2e-33 Score=239.06 Aligned_cols=150 Identities=34% Similarity=0.650 Sum_probs=109.9
Q ss_pred hhHHHHHHhCCCcCCCCCCcccc-ccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEc--
Q psy403 2 DQAFQYIKDNHGIDTESSYPYEA-MMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDI-- 77 (233)
Q Consensus 2 ~~a~~y~~~~~Gi~~e~~yPY~~-~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~-- 77 (233)
..|++|++ ++|+++|++|||+. . ...|.... ....+++..|..+
T Consensus 79 ~~a~~~~~-~~Gi~~e~~yPY~~~~-------------------------------~~~C~~~~~~~~~~~~~~~~~i~~ 126 (243)
T cd02621 79 FLVGKFAE-DFGIVTEDYFPYTADD-------------------------------DRPCKASPSECRRYYFSDYNYVGG 126 (243)
T ss_pred HHHHHHHH-hcCcCCCceeCCCCCC-------------------------------CCCCCCCccccccccccceeEccc
Confidence 46899996 67999999999987 3 22333221 1122233333332
Q ss_pred --CCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCC----CCCCCCCeeEEEeeeeecCCCCceeEEeecCCc
Q psy403 78 --PEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE----CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT 151 (233)
Q Consensus 78 --~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~----c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~ 151 (233)
...++++||++|+++|||+++|++ .++|++|++|||.... |.....
T Consensus 127 ~~~~~~~~~ik~~i~~~GPv~v~~~~-~~~F~~Y~~GIy~~~~~~~~C~~~~~--------------------------- 178 (243)
T cd02621 127 CYGCTNEDEMKWEIYRNGPIVVAFEV-YSDFDFYKEGVYHHTDNDEVSDGDND--------------------------- 178 (243)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEEe-cccccccCCeEECcCCcccccccccc---------------------------
Confidence 124889999999999999999999 5799999999998653 642100
Q ss_pred cccccccceeccCCccccCCCccccccceeEEEEeecCC-CCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccc
Q psy403 152 TWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASF 230 (233)
Q Consensus 152 ~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~ 230 (233)
..++...++|||+|||||++. ++.+|||||||||++|||+|||||+|+. |+|||++.+.+
T Consensus 179 ------------------~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~-~~cgi~~~~~~ 239 (243)
T cd02621 179 ------------------NFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT-NECGIESQAVF 239 (243)
T ss_pred ------------------cccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-cccCcccceEe
Confidence 001123457888888888765 4789999999999999999999999997 99999999865
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=3.3e-33 Score=235.49 Aligned_cols=155 Identities=30% Similarity=0.627 Sum_probs=110.3
Q ss_pred hhHHHHHHhCCCcCCCCCCccccccCC-CchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC----CCcceEeceEEE
Q psy403 2 DQAFQYIKDNHGIDTESSYPYEAMMSF-LPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR----AKSGAVDRGYVD 76 (233)
Q Consensus 2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~-~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~----~~~~~~i~~~~~ 76 (233)
..||+|++ ++|+++|++|||...++. .|+.. ..|.....| ...|.... ....+++..+..
T Consensus 75 ~~a~~~i~-~~G~~~e~~yPY~~~~~~~~~~~~--~~~~~~~~~------------~~~C~~~~~~~~~~~~~~~~~~~~ 139 (236)
T cd02620 75 DAAWKYLT-TTGVVTGGCQPYTIPPCGHHPEGP--PPCCGTPYC------------TPKCQDGCEKTYEEDKHKGKSAYS 139 (236)
T ss_pred HHHHHHHH-hcCCCcCCEecCcCCCCccCCCCC--CCCCCCCCC------------CCCCCcCCccccceeeeeecceee
Confidence 57999997 569999999999976321 11100 111111111 33454332 122356667777
Q ss_pred cCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccc
Q psy403 77 IPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDE 156 (233)
Q Consensus 77 ~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~ 156 (233)
+. .++++||++|+++|||+++|++ .++|+.|++|||... |.....+|||+|||||+
T Consensus 140 ~~-~~~~~ik~~l~~~GPv~v~i~~-~~~f~~Y~~Giy~~~-~~~~~~~HaV~iVGyg~--------------------- 195 (236)
T cd02620 140 VP-SDETDIMKEIMTNGPVQAAFTV-YEDFLYYKSGVYQHT-SGKQLGGHAVKIIGWGV--------------------- 195 (236)
T ss_pred eC-CHHHHHHHHHHHCCCeEEEEEe-chhhhhcCCcEEeec-CCCCcCCeEEEEEEEec---------------------
Confidence 75 4789999999999999999999 579999999999743 43334456666666665
Q ss_pred ccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccc
Q psy403 157 GYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS 229 (233)
Q Consensus 157 G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~ 229 (233)
+ ++.+|||||||||++|||+|||||+|+. |.|||++++.
T Consensus 196 --------------------------------~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~-~~cgi~~~~~ 234 (236)
T cd02620 196 --------------------------------E-NGVPYWLAANSWGTDWGENGYFRILRGS-NECGIESEVV 234 (236)
T ss_pred --------------------------------c-CCeeEEEEEeCCCCCCCCCcEEEEEccC-ccccccccee
Confidence 2 4567888888889999999999999997 8999999875
No 9
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=5.6e-33 Score=245.17 Aligned_cols=143 Identities=36% Similarity=0.638 Sum_probs=108.5
Q ss_pred hhHHHHHHhC--CCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCC-CcceEeceEEEcC
Q psy403 2 DQAFQYIKDN--HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRA-KSGAVDRGYVDIP 78 (233)
Q Consensus 2 ~~a~~y~~~~--~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~-~~~~~i~~~~~~~ 78 (233)
..||+|++++ +|+++|++|||++.++. ...|..... ...+++.+|..++
T Consensus 194 ~~a~~yi~~~~~ggi~~e~~YPY~~~~~~----------------------------~~~C~~~~~~~~~~~i~~~~~i~ 245 (348)
T PTZ00203 194 LQAFEWVLRNMNGTVFTEKSYPYVSGNGD----------------------------VPECSNSSELAPGARIDGYVSME 245 (348)
T ss_pred HHHHHHHHHhcCCCCCccccCCCccCCCC----------------------------CCcCCCCcccccceEecceeecC
Confidence 5799999753 46899999999987321 113432221 2346788898886
Q ss_pred CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403 79 EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 158 (233)
Q Consensus 79 ~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~ 158 (233)
. ++++|+++|+++|||+++|++ .+|++|++|||. .|.....+|+|+|||||.
T Consensus 246 ~-~e~~~~~~l~~~GPv~v~i~a--~~f~~Y~~GIy~--~c~~~~~nHaVliVGYG~----------------------- 297 (348)
T PTZ00203 246 S-SERVMAAWLAKNGPISIAVDA--SSFMSYHSGVLT--SCIGEQLNHGVLLVGYNM----------------------- 297 (348)
T ss_pred c-CHHHHHHHHHhCCCEEEEEEh--hhhcCccCceee--ccCCCCCCeEEEEEEEec-----------------------
Confidence 5 889999999999999999998 389999999996 375444566666666654
Q ss_pred ceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232 (233)
Q Consensus 159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~ 232 (233)
+ ++.+|||||||||++|||+|||||+|+. |.|||++.+...+
T Consensus 298 ------------------------------~-~g~~YWiikNSWG~~WGe~GY~ri~rg~-n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 298 ------------------------------T-GEVPYWVIKNSWGEDWGEKGYVRVTMGV-NACLLTGYPVSVH 339 (348)
T ss_pred ------------------------------C-CCceEEEEEcCCCCCcCcCceEEEEcCC-CcccccceEEEEe
Confidence 2 3567888888889999999999999996 9999997766543
No 10
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=5.4e-33 Score=251.60 Aligned_cols=142 Identities=33% Similarity=0.704 Sum_probs=106.8
Q ss_pred ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG 80 (233)
Q Consensus 1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~ 80 (233)
+..||+|++ ++||++|++|||++. ++.|.... ...+.+.+|..++
T Consensus 302 ~~~A~~yi~-~~Gi~~e~~YPY~~~-------------------------------~~~C~~~~-~~~~~i~~y~~~~-- 346 (448)
T PTZ00200 302 PDTALEYVK-NKGLSSSSDVPYLAK-------------------------------DGKCVVSS-TKKVYIDSYLVAK-- 346 (448)
T ss_pred HHHHHHHHh-hcCccccccCCCCCC-------------------------------CCCCcCCC-CCeeEecceEecC--
Confidence 357999996 569999999999987 45565433 2335678887653
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK 160 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~ 160 (233)
..+.|+ ++..+|||+|+|++ ..+|+.|++|||.+ .|.. ..+|||+|||||.+
T Consensus 347 ~~~~l~-~~l~~GPV~v~i~~-~~~f~~Yk~GIy~~-~C~~-~~nHaV~lVGyG~d------------------------ 398 (448)
T PTZ00200 347 GKDVLN-KSLVISPTVVYIAV-SRELLKYKSGVYNG-ECGK-SLNHAVLLVGEGYD------------------------ 398 (448)
T ss_pred HHHHHH-HHHhcCCEEEEeec-ccccccCCCCcccc-ccCC-CCcEEEEEEEeccc------------------------
Confidence 344444 44567999999998 47899999999974 5753 35666666666531
Q ss_pred eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC--CCccccccccccccC
Q psy403 161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR--ENNCGVASSASFPLV 233 (233)
Q Consensus 161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~--~~~cgi~~~~~~~~~ 233 (233)
+.++.+|||||||||++|||+|||||+|+. .|.|||++.+.||++
T Consensus 399 ----------------------------~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 399 ----------------------------EKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred ----------------------------CCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence 124678888888889999999999999963 489999999999975
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1e-32 Score=253.54 Aligned_cols=162 Identities=28% Similarity=0.490 Sum_probs=113.2
Q ss_pred ChhHHHHHHhCCCcCCCCCC--ccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcc------eEec
Q psy403 1 MDQAFQYIKDNHGIDTESSY--PYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSG------AVDR 72 (233)
Q Consensus 1 ~~~a~~y~~~~~Gi~~e~~y--PY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~------~~i~ 72 (233)
+..||+|++ ++||++|++| ||++.++. ...|+....... ..+.
T Consensus 284 p~~A~~yi~-~~GI~tE~dY~~PY~~~dg~----------------------------~~~Ck~~~~~~~y~~~~~~~I~ 334 (548)
T PTZ00364 284 PEEVGKFAE-TFGILTTDSYYIPYDSGDGV----------------------------ERACKTRRPSRRYYFTNYGPLG 334 (548)
T ss_pred HHHHHHHHH-hCCcccccccCCCCCCCCCC----------------------------CCCCCCCcccceeeeeeeEEec
Confidence 457999996 5799999999 99876321 112433222222 3445
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcc
Q psy403 73 GYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152 (233)
Q Consensus 73 ~~~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~ 152 (233)
+|+.+. .++++||++|+++|||+|+|++ ..+|+.|++|||....-.... ++.. ...+..
T Consensus 335 gyy~~~-~~e~~I~~eI~~~GPVsVaIda-~~df~~YksGiy~gi~~~~~~--------~~~~--~~~~~~--------- 393 (548)
T PTZ00364 335 GYYGAV-TDPDEIIWEIYRHGPVPASVYA-NSDWYNCDENSTEDVRYVSLD--------DYST--ASADRP--------- 393 (548)
T ss_pred ceeecC-CcHHHHHHHHHHcCCeEEEEEe-chHHHhcCCCCccCeeccccc--------cccc--cccCCc---------
Confidence 555554 4789999999999999999999 468999999998521000000 0000 000000
Q ss_pred ccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCC--CCCCCceEEEEecCCCccccccccc
Q psy403 153 WGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT--TWGDEGYIKMARNRENNCGVASSAS 229 (233)
Q Consensus 153 wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~--~WG~~Gy~~i~r~~~~~cgi~~~~~ 229 (233)
...|..+.+||||+|||||+++++.+|||||||||+ +|||+|||||+||. |+||||++++
T Consensus 394 ----------------~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~-N~CGIes~~v 455 (548)
T PTZ00364 394 ----------------LRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV-NAYNIESEVV 455 (548)
T ss_pred ----------------ccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCC-Ccccccceee
Confidence 001122457999999999987788999999999999 99999999999997 9999999876
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8.2e-33 Score=228.94 Aligned_cols=147 Identities=42% Similarity=0.861 Sum_probs=118.6
Q ss_pred hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCc-ceEeceEEEcCCC
Q psy403 2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKS-GAVDRGYVDIPEG 80 (233)
Q Consensus 2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~-~~~i~~~~~~~~~ 80 (233)
.+||+|+++++|+++|++|||.... ...|....... ..++..|..+...
T Consensus 72 ~~a~~~~~~~~Gi~~e~~~pY~~~~------------------------------~~~c~~~~~~~~~~~i~~~~~~~~~ 121 (219)
T PF00112_consen 72 FDALKYIKNNNGIVTEEDYPYNGNE------------------------------NPTCKSKKSNSYYVKIKGYGKVKDN 121 (219)
T ss_dssp HHHHHHHHHHTSBEBTTTS--SSSS------------------------------SCSSCHSGGGEEEBEESEEEEEEST
T ss_pred cccceeecccCcccccccccccccc------------------------------ccccccccccccccccccccccccc
Confidence 5799999864799999999999761 14565443332 4788999988776
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK 160 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~ 160 (233)
++++||++|+++|||+++|.+..++|+.|++|||..+.|.....+|+|+||||++ +.
T Consensus 122 ~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~-~~---------------------- 178 (219)
T PF00112_consen 122 DIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYDD-EN---------------------- 178 (219)
T ss_dssp CHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEEE-ET----------------------
T ss_pred chhHHHHHHhhCceeeeeeeccccccccccceeeecccccccccccccccccccc-cc----------------------
Confidence 8999999999999999999995436999999999988787677889999999988 22
Q ss_pred eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403 161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232 (233)
Q Consensus 161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~ 232 (233)
+..|||||||||++||++||+||.|+.+++|||+++++||+
T Consensus 179 -------------------------------~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 179 -------------------------------GKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp -------------------------------TEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred -------------------------------ceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 35667777777999999999999999744999999999996
No 13
>KOG1544|consensus
Probab=99.95 E-value=8.2e-29 Score=209.73 Aligned_cols=169 Identities=21% Similarity=0.494 Sum_probs=116.2
Q ss_pred ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC--CCcceEeceEEEcC
Q psy403 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR--AKSGAVDRGYVDIP 78 (233)
Q Consensus 1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~--~~~~~~i~~~~~~~ 78 (233)
++.||.||. +.|+|...||||...+...|+ -|.+.++-..+.+.. ....|.... +...++...-+++
T Consensus 281 lDRAWWYlR-KrGvVsdhCYP~~~dQ~~~~~-----~C~m~sR~~grgkRq----at~~CPn~~~~Sn~iyq~tPPYrV- 349 (470)
T KOG1544|consen 281 LDRAWWYLR-KRGVVSDHCYPFSGDQAGPAP-----PCMMHSRAMGRGKRQ----ATAHCPNSYVNSNDIYQVTPPYRV- 349 (470)
T ss_pred ccchheeee-cccccccccccccCCCCCCCC-----CceeeccccCccccc----ccCcCCCcccccCceeeecCCeec-
Confidence 478999995 679999999999876433221 233333322221111 022355332 3455777777777
Q ss_pred CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403 79 EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 158 (233)
Q Consensus 79 ~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~ 158 (233)
..+|++||++||++|||.+.|.+ +++|++|++|||.+.+-..... ..
T Consensus 350 SSnE~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY~H~~~~~~~~---------------e~----------------- 396 (470)
T KOG1544|consen 350 SSNEKEIMKELMENGPVQALMEV-HEDFFLYKGGIYSHTPVSLGRP---------------ER----------------- 396 (470)
T ss_pred cCCHHHHHHHHHhCCChhhhhhh-hhhhhhhccceeeccccccCCc---------------hh-----------------
Confidence 45999999999999999999988 8999999999998765332110 00
Q ss_pred ceeccCCccccCCCccccccceeEEEEeecCC----CCcceEEEeccCCCCCCCCceEEEEecCCCcccccccc
Q psy403 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDE----NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228 (233)
Q Consensus 159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~----~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~ 228 (233)
....-.|+|.|.|||++. ...+|||..||||+.|||+|||||.||+ |+|-||++.
T Consensus 397 --------------yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv-NecdIEsfv 455 (470)
T KOG1544|consen 397 --------------YRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV-NECDIESFV 455 (470)
T ss_pred --------------hhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc-cchhhhHhh
Confidence 001223555555555433 2458999999999999999999999998 999999875
No 14
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.94 E-value=2.3e-26 Score=219.95 Aligned_cols=165 Identities=25% Similarity=0.414 Sum_probs=103.7
Q ss_pred hHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCC-CCCcCC-CCCcceEeceEEEcCCC
Q psy403 3 QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGD-DNCRYK-RAKSGAVDRGYVDIPEG 80 (233)
Q Consensus 3 ~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~-~~C~~~-~~~~~~~i~~~~~~~~~ 80 (233)
.+++|++++.||++|++|||.... ....|+.....+...... ..+... .....+.+.+|..+...
T Consensus 604 efl~yI~e~GgLptESdYPYt~k~-------------~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~ 670 (1004)
T PTZ00462 604 EFLQIIEDNGFLPADSNYLYNYTK-------------VGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESE 670 (1004)
T ss_pred HHHHHHHHcCCCcccccCCCccCC-------------CCCCCCCCcccccccccccccccccccccceeeccceEEeccc
Confidence 456888766578999999998630 001122111000000000 000000 11122445566655321
Q ss_pred ----c----HHHHHHHHHhcCCeEEEEeccCcccccc-ccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCc
Q psy403 81 ----D----EYKLKAAVATIGPVSIAIDASHQSFQFY-SEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT 151 (233)
Q Consensus 81 ----~----~~~i~~~i~~~GPv~v~~~~~~~~f~~Y-~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~ 151 (233)
+ ++.||++|+++|||+|+|++. +|+.| .+|||....|.....+|||+|||||...+
T Consensus 671 ~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in------------- 735 (1004)
T PTZ00462 671 HFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYIN------------- 735 (1004)
T ss_pred ccccchhhHHHHHHHHHHhcCCEEEEEEee--hHHhhhcCCccccCCCCCCcCCceEEEEEeccccc-------------
Confidence 1 468999999999999999983 68888 48998777786545567777777765100
Q ss_pred cccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEe-cCCCcccccccccc
Q psy403 152 TWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR-NRENNCGVASSASF 230 (233)
Q Consensus 152 ~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r-~~~~~cgi~~~~~~ 230 (233)
.+..+.+|||||||||+.||++|||||+| +. +.|||.....+
T Consensus 736 ------------------------------------~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~-n~CGin~i~t~ 778 (1004)
T PTZ00462 736 ------------------------------------DEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP-SHCEDNFIHSV 778 (1004)
T ss_pred ------------------------------------ccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC-CCCccchheee
Confidence 00125689999999999999999999998 55 89999877666
Q ss_pred cc
Q psy403 231 PL 232 (233)
Q Consensus 231 ~~ 232 (233)
|+
T Consensus 779 ~~ 780 (1004)
T PTZ00462 779 VI 780 (1004)
T ss_pred ee
Confidence 65
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.93 E-value=3.1e-25 Score=183.82 Aligned_cols=140 Identities=27% Similarity=0.445 Sum_probs=99.6
Q ss_pred hhHHH-HHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403 2 DQAFQ-YIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG 80 (233)
Q Consensus 2 ~~a~~-y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~ 80 (233)
..|+. +++ ++|+++|++|||...+.. | ...|........+++..|..+...
T Consensus 72 ~~~~~~~~~-~~Gi~~e~~~Py~~~~~~---------------~------------~~~~~~~~~~~~~~~~~y~~~~~~ 123 (223)
T cd02619 72 LSALLKLVA-LKGIPPEEDYPYGAESDG---------------E------------EPKSEAALNAAKVKLKDYRRVLKN 123 (223)
T ss_pred HHHHHHHHH-HcCCCccccCCCCCCCCC---------------C------------CCCCccchhhcceeecceeEeCch
Confidence 35676 774 679999999999987211 1 011111233455788999888776
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEe-----CCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccc
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY-----EPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGD 155 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~-----~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~ 155 (233)
++++||++|+++|||+++|.+ .+.|..|++|++. ...+.....+|||+||||++
T Consensus 124 ~~~~ik~aL~~~gPv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~-------------------- 182 (223)
T cd02619 124 NIEDIKEALAKGGPVVAGFDV-YSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDD-------------------- 182 (223)
T ss_pred hHHHHHHHHHHCCCEEEEEEc-ccchhcccCccccccccccccCCCccCCeEEEEEeecC--------------------
Confidence 799999999999999999998 5789999999873 22233334556666666655
Q ss_pred cccceeccCCccccCCCccccccceeEEEEeecCC-CCcceEEEeccCCCCCCCCceEEEEecCCCccccc
Q psy403 156 EGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVA 225 (233)
Q Consensus 156 ~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~ 225 (233)
+. .+..|||||||||++||++||+||.++ +.+.+.
T Consensus 183 ---------------------------------~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~--~~~~~~ 218 (223)
T cd02619 183 ---------------------------------NYVEGKGAFIVKNSWGTDWGDNGYGRISYE--DVYEMT 218 (223)
T ss_pred ---------------------------------CCCCCCCEEEEEeCCCCccccCCEEEEehh--hhhhhh
Confidence 22 256788888888999999999999997 355443
No 16
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.90 E-value=1.5e-23 Score=169.02 Aligned_cols=78 Identities=60% Similarity=1.262 Sum_probs=57.9
Q ss_pred EEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403 96 SIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST 175 (233)
Q Consensus 96 ~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~ 175 (233)
++.+.+ .+|+.|++|||+...|.....+|+|+|||||.
T Consensus 93 ~~~~~~--~~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~---------------------------------------- 130 (174)
T smart00645 93 SVAIDA--SDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGT---------------------------------------- 130 (174)
T ss_pred EEEEEc--ccccCCcCeEECCCCCCCCcccEEEEEEEEee----------------------------------------
Confidence 455555 36999999999876675434566666666654
Q ss_pred cccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccc
Q psy403 176 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228 (233)
Q Consensus 176 ~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~ 228 (233)
+.++.+|||||||||+.||++|||||.|+..|+|||+...
T Consensus 131 -------------~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 131 -------------EENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred -------------cCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 2245678888888899999999999999854899996543
No 17
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.45 E-value=1.7e-13 Score=124.11 Aligned_cols=107 Identities=24% Similarity=0.393 Sum_probs=71.2
Q ss_pred eEEEcCCCcHHHHH----HHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeec
Q psy403 73 GYVDIPEGDEYKLK----AAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNS 148 (233)
Q Consensus 73 ~~~~~~~~~~~~i~----~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNS 148 (233)
.|..+ .+++|+ ++|...+||.++++++ .|..|++||+.......+. +-|....-+..
T Consensus 288 ~y~Nv---p~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~------~f~~~~~~~Ka-------- 348 (437)
T cd00585 288 LYLNV---PMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYEL------LFGIDFGLNKA-------- 348 (437)
T ss_pred eEEec---CHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhh------hcCccccCCHH--------
Confidence 44444 344555 5778889999999994 5778999999532211111 11111100000
Q ss_pred CCccccccccceeccCCccccCCCccccccceeEEEEeecCCCCc-ceEEEeccCCCCCCCCceEEEEec
Q psy403 149 WNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGN-DYWLVKNSWNTTWGDEGYIKMARN 217 (233)
Q Consensus 149 wg~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~-~yWiv~nswg~~WG~~Gy~~i~r~ 217 (233)
.+-.|.....+|||++||++.+.+++ .||+||||||++||++||++|.++
T Consensus 349 -------------------eRl~~~es~~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 349 -------------------ERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred -------------------HHHhhcCCcCCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 01113334678999999999888776 699999999999999999999875
No 18
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.30 E-value=4e-12 Score=117.87 Aligned_cols=50 Identities=46% Similarity=0.983 Sum_probs=44.0
Q ss_pred CCCCeeEEEeeeeecCCCCceeEEeecCCc--cccccccceeccCCccccCCCccc
Q psy403 122 TQLDHAVLVVGYGTDENGNDYWLVKNSWNT--TWGDEGYIKMARNRVYYEPECNST 175 (233)
Q Consensus 122 ~~~~Hav~ivGyg~~~~~~~ywivkNSwg~--~wg~~G~~~~~r~gi~~~~~c~~~ 175 (233)
...+|||+|||||.++++.+|||||||||+ .||++||||+.|+. ++|+++
T Consensus 400 ~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~----N~CGIe 451 (548)
T PTZ00364 400 SNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV----NAYNIE 451 (548)
T ss_pred ccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCC----Cccccc
Confidence 357999999999975678899999999999 99999999999975 568765
No 19
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.7e-12 Score=109.62 Aligned_cols=54 Identities=26% Similarity=0.259 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeec
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTD 136 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~ 136 (233)
+.-.|+++++.+|-++..|......|..-.-+.+.. -+....+|||+||||++.
T Consensus 223 dnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~--~s~~~~gHAv~iVGyDDs 276 (372)
T COG4870 223 DNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYV--DSGENWGHAVLIVGYDDS 276 (372)
T ss_pred cccchHHHHhhhccccceeEEecccccccccCCCCC--CccccccceEEEEecccc
Confidence 344577778888888766554111222211222321 222567999999999983
No 20
>PTZ00203 cathepsin L protease; Provisional
Probab=99.21 E-value=7.1e-12 Score=111.12 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=80.7
Q ss_pred CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403 28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA 101 (233)
Q Consensus 28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~ 101 (233)
.+|...|||. ++.++++++++.|..+++.... .+.+. ..+...++++|.++-.......-+.
T Consensus 125 ~lP~~~DWR~----------~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~-- 192 (348)
T PTZ00203 125 AVPDAVDWRE----------KGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGL-- 192 (348)
T ss_pred cCCCCCcCCc----------CCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCC--
Confidence 4677677763 4677888889999988875542 22111 1233568999988853211110000
Q ss_pred cCccccccc----cceEe------------CCCCCCCCC-CeeEEEeeeeecCC---CCceeEEeecCCcccccccccee
Q psy403 102 SHQSFQFYS----EGVYY------------EPECNSTQL-DHAVLVVGYGTDEN---GNDYWLVKNSWNTTWGDEGYIKM 161 (233)
Q Consensus 102 ~~~~f~~Y~----~Giy~------------~~~c~~~~~-~Hav~ivGyg~~~~---~~~ywivkNSwg~~wg~~G~~~~ 161 (233)
....|.+.. +|+.. .+.|..... ...+.+.||-.... ....+|.++++...-.+...|+.
T Consensus 193 ~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~ 272 (348)
T PTZ00203 193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMS 272 (348)
T ss_pred HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcC
Confidence 012233221 12211 114642211 23456777764322 12334556677665555557899
Q ss_pred ccCCccccCCCccccccceeEEEE
Q psy403 162 ARNRVYYEPECNSTQLDHAVLVVG 185 (233)
Q Consensus 162 ~r~gi~~~~~c~~~~~~haV~vVG 185 (233)
|++||+. .|+...+||||+|||
T Consensus 273 Y~~GIy~--~c~~~~~nHaVliVG 294 (348)
T PTZ00203 273 YHSGVLT--SCIGEQLNHGVLLVG 294 (348)
T ss_pred ccCceee--ccCCCCCCeEEEEEE
Confidence 9999986 387777899999986
No 21
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.17 E-value=2.1e-11 Score=114.79 Aligned_cols=50 Identities=40% Similarity=1.008 Sum_probs=41.7
Q ss_pred CCCCeeEEEeeeeecC-CCC--ceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403 122 TQLDHAVLVVGYGTDE-NGN--DYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST 175 (233)
Q Consensus 122 ~~~~Hav~ivGyg~~~-~~~--~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~ 175 (233)
...+|||+|||||.++ ++. +|||||||||+.||++||||+.|+. +.|+++
T Consensus 616 e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIE 668 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIE 668 (693)
T ss_pred ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCc
Confidence 4579999999999742 453 7999999999999999999999885 467664
No 22
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=98.75 E-value=1e-08 Score=82.61 Aligned_cols=27 Identities=44% Similarity=0.869 Sum_probs=22.6
Q ss_pred ceeccCCccccCCCccccccceeEEEE
Q psy403 159 IKMARNRVYYEPECNSTQLDHAVLVVG 185 (233)
Q Consensus 159 ~~~~r~gi~~~~~c~~~~~~haV~vVG 185 (233)
|+.|.+||+....|....++|+|+|||
T Consensus 101 f~~Y~~Gi~~~~~~~~~~~~Hav~ivG 127 (174)
T smart00645 101 FQFYKSGIYDHPGCGSGTLDHAVLIVG 127 (174)
T ss_pred ccCCcCeEECCCCCCCCcccEEEEEEE
Confidence 778999998776787766899999975
No 23
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=98.74 E-value=9.9e-09 Score=86.70 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=34.9
Q ss_pred eEEEeeeeecCC--CCceeEEeecCCccccccc-cceeccCCccccCCCccccccceeEEEE
Q psy403 127 AVLVVGYGTDEN--GNDYWLVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVG 185 (233)
Q Consensus 127 av~ivGyg~~~~--~~~ywivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVG 185 (233)
...+.+|....+ .....|+++++...--+.. .|+.|++||+....| ...++|||+|||
T Consensus 126 ~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~-~~~~~HaV~IVG 186 (239)
T cd02698 126 LYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQ-DPLINHIISVAG 186 (239)
T ss_pred eEEeeeceecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEccCCC-CCcCCeEEEEEE
Confidence 345666654211 1112234555554433332 588999999976656 456899999976
No 24
>KOG1542|consensus
Probab=98.73 E-value=9.8e-10 Score=95.06 Aligned_cols=146 Identities=20% Similarity=0.203 Sum_probs=97.3
Q ss_pred CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcc-eEeceEE-----EcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403 28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSG-AVDRGYV-----DIPEGDEYKLKAAVATIGPVSIAIDA 101 (233)
Q Consensus 28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~-~~i~~~~-----~~~~~~~~~i~~~i~~~GPv~v~~~~ 101 (233)
.+|.+.||| .++++|++++++.|..++++.+ ..+.+-. .+...+|++|.++-...--..-++
T Consensus 156 ~lP~~fDWR----------~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GGl-- 223 (372)
T KOG1542|consen 156 SLPESFDWR----------DKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGGL-- 223 (372)
T ss_pred CCCcccchh----------ccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCCCCC--
Confidence 467666676 4789999999999999998765 2333222 233568888888743211111111
Q ss_pred cCcccccc--ccceEe----------CCCCCCCCCCeeEEEeeeeec---CCCCceeEEeecCCccccccccceeccCCc
Q psy403 102 SHQSFQFY--SEGVYY----------EPECNSTQLDHAVLVVGYGTD---ENGNDYWLVKNSWNTTWGDEGYIKMARNRV 166 (233)
Q Consensus 102 ~~~~f~~Y--~~Giy~----------~~~c~~~~~~Hav~ivGyg~~---~~~~~ywivkNSwg~~wg~~G~~~~~r~gi 166 (233)
+...|.+- .+|.-. ...|......-.|.|-++-.. ++....|++++++-+.-.+..++|.||+||
T Consensus 224 ~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV 303 (372)
T KOG1542|consen 224 MDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGV 303 (372)
T ss_pred hhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccc
Confidence 12334431 123322 125654444556778888653 455678999999988888899999999999
Q ss_pred ccc--CCCccccccceeEEEE
Q psy403 167 YYE--PECNSTQLDHAVLVVG 185 (233)
Q Consensus 167 ~~~--~~c~~~~~~haV~vVG 185 (233)
+.- ..|+...+|||||+||
T Consensus 304 ~~P~~~~Cs~~~~~HaVLlvG 324 (372)
T KOG1542|consen 304 SCPSKYICSPKLLNHAVLLVG 324 (372)
T ss_pred cCCCcccCCccccCceEEEEe
Confidence 875 3599988999999975
No 25
>KOG1543|consensus
Probab=98.68 E-value=1.8e-08 Score=88.80 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=85.5
Q ss_pred CCchhhhhhhhhhhhhhcccCCccc-cccCCCCCcCCCCCcce-EeceEE------EcCCCcHHHHHHHHHhcCCeEEEE
Q psy403 28 FLPSFLFRRLCYLLTICHKRSNQVT-VTSGDDNCRYKRAKSGA-VDRGYV------DIPEGDEYKLKAAVATIGPVSIAI 99 (233)
Q Consensus 28 ~~p~~~~~~~c~~~~~C~~~~~~~~-~~~~~~~C~~~~~~~~~-~i~~~~------~~~~~~~~~i~~~i~~~GPv~v~~ 99 (233)
.+|...|||. +++++ ++++++.|..++++... .+.+.. .+...++++|.++-...+. ++
T Consensus 108 ~~p~s~DwR~----------~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~---GC 174 (325)
T KOG1543|consen 108 DLPDSFDWRD----------KGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGD---GC 174 (325)
T ss_pred hCCCCccccc----------cCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCC---Cc
Confidence 4676556652 22444 47789999998876542 111111 4446688888888653122 11
Q ss_pred ec--cCccccccc-cceEe----------CCCCCCCCCCeeEEEeeeeecCCCCcee----EEeecCCccccccc-ccee
Q psy403 100 DA--SHQSFQFYS-EGVYY----------EPECNSTQLDHAVLVVGYGTDENGNDYW----LVKNSWNTTWGDEG-YIKM 161 (233)
Q Consensus 100 ~~--~~~~f~~Y~-~Giy~----------~~~c~~~~~~Hav~ivGyg~~~~~~~yw----ivkNSwg~~wg~~G-~~~~ 161 (233)
+- ....|++.. .|+.. ...|......-.+.+.|+-....+ +.. +.++++.+.--+.+ -|+.
T Consensus 175 ~GG~~~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~~F~~ 253 (325)
T KOG1543|consen 175 NGGEPKNAFKYIKKNGGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYEDFSL 253 (325)
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehhhhhh
Confidence 11 122344432 23322 124544443455666666543322 222 34566766555544 5999
Q ss_pred ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEec
Q psy403 162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217 (233)
Q Consensus 162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~ 217 (233)
|++||+....|. +. ..+=+++-=.||+ +++.-.+|.++
T Consensus 254 Y~~GVy~~~~~~---------------~~-~~~Hav~iVGyG~--~~~~~YWivkN 291 (325)
T KOG1543|consen 254 YKGGVYAEEKGD---------------DK-EGDHAVLIVGYGT--GDGVDYWIVKN 291 (325)
T ss_pred ccCceEeCCCCC---------------CC-CCCceEEEEEEcC--CCCceeEEEEc
Confidence 999999876662 01 2455666667888 44445566665
No 26
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=98.62 E-value=3.7e-08 Score=83.31 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=16.7
Q ss_pred EEeecCCccccccc-cceeccCCccccCC
Q psy403 144 LVKNSWNTTWGDEG-YIKMARNRVYYEPE 171 (233)
Q Consensus 144 ivkNSwg~~wg~~G-~~~~~r~gi~~~~~ 171 (233)
|.++++...--+.. -|+.|++||+....
T Consensus 140 i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~ 168 (243)
T cd02621 140 IYRNGPIVVAFEVYSDFDFYKEGVYHHTD 168 (243)
T ss_pred HHHcCCEEEEEEecccccccCCeEECcCC
Confidence 44555544333322 47889999987553
No 27
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=98.62 E-value=3.3e-08 Score=83.39 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=26.7
Q ss_pred EEeecCCcccccc-ccceeccCCccccCCCccccccceeEEEE
Q psy403 144 LVKNSWNTTWGDE-GYIKMARNRVYYEPECNSTQLDHAVLVVG 185 (233)
Q Consensus 144 ivkNSwg~~wg~~-G~~~~~r~gi~~~~~c~~~~~~haV~vVG 185 (233)
|+++++...-.+. -.|+.|++||+... |....++|||+|||
T Consensus 151 l~~~GPv~v~i~~~~~f~~Y~~Giy~~~-~~~~~~~HaV~iVG 192 (236)
T cd02620 151 IMTNGPVQAAFTVYEDFLYYKSGVYQHT-SGKQLGGHAVKIIG 192 (236)
T ss_pred HHHCCCeEEEEEechhhhhcCCcEEeec-CCCCcCCeEEEEEE
Confidence 3344444433333 25778899998643 66667899999976
No 28
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=98.60 E-value=1.7e-07 Score=77.15 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=42.4
Q ss_pred CCCCCCCCCeeEEEeeeeecCC----CCceeEEeecCCccccccc-cceeccCCccccCCCccccccceeEEEEe
Q psy403 117 PECNSTQLDHAVLVVGYGTDEN----GNDYWLVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVGY 186 (233)
Q Consensus 117 ~~c~~~~~~Hav~ivGyg~~~~----~~~ywivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVGy 186 (233)
..|..........|.+|..... ..+-.|.++++...--... .|..|++||+..+.|.....+|||+||||
T Consensus 93 ~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy 167 (210)
T cd02248 93 GTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGY 167 (210)
T ss_pred CCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEEEEEE
Confidence 3564433334555666654221 2234455656554332222 57778999998777766678999999998
No 29
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=98.30 E-value=4.3e-07 Score=88.68 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=31.7
Q ss_pred eecCCccccccccceec-cCCccccCCCccccccceeEEEEeecC
Q psy403 146 KNSWNTTWGDEGYIKMA-RNRVYYEPECNSTQLDHAVLVVGYGTD 189 (233)
Q Consensus 146 kNSwg~~wg~~G~~~~~-r~gi~~~~~c~~~~~~haV~vVGyg~~ 189 (233)
..++.....+...|+.| .+|++....|+...++|||+|||||++
T Consensus 689 ~kGPVaV~IdAsdf~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~ 733 (1004)
T PTZ00462 689 NKGSVIAYIKAENVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNY 733 (1004)
T ss_pred hcCCEEEEEEeehHHhhhcCCccccCCCCCCcCCceEEEEEeccc
Confidence 33444444444445566 589877778988788999999999975
No 30
>PTZ00200 cysteine proteinase; Provisional
Probab=98.28 E-value=4.9e-07 Score=82.78 Aligned_cols=36 Identities=36% Similarity=1.010 Sum_probs=28.7
Q ss_pred CCceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403 139 GNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST 175 (233)
Q Consensus 139 ~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~ 175 (233)
+.+|||||||||+.||++||+++.|+.. -.+.|+.+
T Consensus 402 g~~YWIIkNSWG~~WGe~GY~ri~r~~~-g~n~CGI~ 437 (448)
T PTZ00200 402 KKRYWIIKNSWGTDWGENGYMRLERTNE-GTDKCGIL 437 (448)
T ss_pred CCceEEEEcCCCCCcccCeeEEEEeCCC-CCCcCCcc
Confidence 3479999999999999999999998632 13468763
No 31
>PTZ00021 falcipain-2; Provisional
Probab=98.26 E-value=5.6e-07 Score=82.93 Aligned_cols=36 Identities=28% Similarity=0.822 Sum_probs=29.8
Q ss_pred CCceeEEeecCCccccccccceeccCCccccCCCcc
Q psy403 139 GNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNS 174 (233)
Q Consensus 139 ~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~ 174 (233)
+.+|||||||||+.||++||+++.|+.....+.|++
T Consensus 444 ~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI 479 (489)
T PTZ00021 444 KRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSL 479 (489)
T ss_pred CCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCC
Confidence 468999999999999999999999875433456876
No 32
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=98.23 E-value=9.3e-07 Score=72.74 Aligned_cols=61 Identities=28% Similarity=0.409 Sum_probs=40.4
Q ss_pred eEEEeeeeecCC----CCceeEEeecCCccccc-cc-cceeccCCccccCCCccccccceeEEEEee
Q psy403 127 AVLVVGYGTDEN----GNDYWLVKNSWNTTWGD-EG-YIKMARNRVYYEPECNSTQLDHAVLVVGYG 187 (233)
Q Consensus 127 av~ivGyg~~~~----~~~ywivkNSwg~~wg~-~G-~~~~~r~gi~~~~~c~~~~~~haV~vVGyg 187 (233)
.+.+-+|..... .....|.++++...... .. .|..+++||+....|.....+|||+|||||
T Consensus 109 ~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~ 175 (219)
T PF00112_consen 109 YVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYD 175 (219)
T ss_dssp EBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEE
T ss_pred cccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccccccccccccccccccc
Confidence 466777765322 12334455555433221 22 477888999988888888899999999999
No 33
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.23 E-value=1.4e-06 Score=79.36 Aligned_cols=41 Identities=41% Similarity=0.832 Sum_probs=34.5
Q ss_pred cccceeEEEEeecCCCCc-ceEEEeccCCCCCCCCceEEEEe
Q psy403 176 QLDHAVLVVGYGTDENGN-DYWLVKNSWNTTWGDEGYIKMAR 216 (233)
Q Consensus 176 ~~~haV~vVGyg~~~~~~-~yWiv~nswg~~WG~~Gy~~i~r 216 (233)
..+||++++|..-|.+|+ .+|+|+||||+..|.+||+.|..
T Consensus 358 ~~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 358 TMTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp --EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred CCceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 468999999999988887 59999999999999999999975
No 34
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.13 E-value=9.5e-06 Score=74.04 Aligned_cols=76 Identities=29% Similarity=0.485 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCeEEEEeccCccccccccceEeCCCC--------------------CCCCCCeeEEEeeeeecCCCC-ce
Q psy403 84 KLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC--------------------NSTQLDHAVLVVGYGTDENGN-DY 142 (233)
Q Consensus 84 ~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c--------------------~~~~~~Hav~ivGyg~~~~~~-~y 142 (233)
.+.+.|...-||-.+.++. ..| ..+.||.....- .....+|||+|+|...+++++ .+
T Consensus 301 ~~i~~Lk~G~~VwfgcDV~-k~~-~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~ 378 (438)
T PF03051_consen 301 AAIKSLKAGYPVWFGCDVG-KFF-DRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVR 378 (438)
T ss_dssp HHHHHHHTT--EEEEEETT-TTE-ETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEE
T ss_pred HHHHHHHcCCcEEEeccCC-ccc-cccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeE
Confidence 4455577888999999994 333 456777753210 012348999999999877777 59
Q ss_pred eEEeecCCcccccccccee
Q psy403 143 WLVKNSWNTTWGDEGYIKM 161 (233)
Q Consensus 143 wivkNSwg~~wg~~G~~~~ 161 (233)
|+|+||||+..|.+|||.+
T Consensus 379 wkVeNSWG~~~g~kGy~~m 397 (438)
T PF03051_consen 379 WKVENSWGTDNGDKGYFYM 397 (438)
T ss_dssp EEEE-SBTTTSTBTTEEEE
T ss_pred EEEEcCCCCCCCCCcEEEE
Confidence 9999999999999999753
No 35
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=97.92 E-value=1.2e-05 Score=66.13 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=18.7
Q ss_pred ceeccCCcc-----ccCCCccccccceeEEEE
Q psy403 159 IKMARNRVY-----YEPECNSTQLDHAVLVVG 185 (233)
Q Consensus 159 ~~~~r~gi~-----~~~~c~~~~~~haV~vVG 185 (233)
|..+.++++ ....|.....+|||+|||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivG 179 (223)
T cd02619 148 FDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVG 179 (223)
T ss_pred hhcccCccccccccccccCCCccCCeEEEEEe
Confidence 455666664 344466677899999975
No 36
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=97.52 E-value=0.00011 Score=67.21 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.9
Q ss_pred hHHHHHHhCCCcCCCCCCcccc
Q psy403 3 QAFQYIKDNHGIDTESSYPYEA 24 (233)
Q Consensus 3 ~a~~y~~~~~Gi~~e~~yPY~~ 24 (233)
.+...+ +++|+++.++||=+.
T Consensus 140 m~~~li-~KYGvVPk~~~pet~ 160 (437)
T cd00585 140 MLVNLI-EKYGLVPKSVMPESF 160 (437)
T ss_pred HHHHHH-HHcCCCcccccCCCc
Confidence 455666 578999999999653
No 37
>KOG1544|consensus
Probab=97.32 E-value=0.0001 Score=63.81 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=39.4
Q ss_pred CCCCeeEEEeeeeecC----CCCceeEEeecCCccccccccceeccCCc
Q psy403 122 TQLDHAVLVVGYGTDE----NGNDYWLVKNSWNTTWGDEGYIKMARNRV 166 (233)
Q Consensus 122 ~~~~Hav~ivGyg~~~----~~~~ywivkNSwg~~wg~~G~~~~~r~gi 166 (233)
....|+|.|.|||++. ...+||+..||||+.||++|||++.|+..
T Consensus 399 ~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN 447 (470)
T KOG1544|consen 399 RHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN 447 (470)
T ss_pred hcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc
Confidence 4678999999999853 34579999999999999999999999873
No 38
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=96.59 E-value=0.005 Score=53.93 Aligned_cols=36 Identities=39% Similarity=0.814 Sum_probs=31.4
Q ss_pred CCeeEEEeeeeecCCC-CceeEEeecCCccccccccc
Q psy403 124 LDHAVLVVGYGTDENG-NDYWLVKNSWNTTWGDEGYI 159 (233)
Q Consensus 124 ~~Hav~ivGyg~~~~~-~~ywivkNSwg~~wg~~G~~ 159 (233)
..|||+|.|.+.++++ .--|.|.||||..-|.+|||
T Consensus 361 mTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~Gyf 397 (444)
T COG3579 361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYF 397 (444)
T ss_pred HHHHHHhhccccccCCCceeeEeecccccccCCCceE
Confidence 4799999999977664 45899999999999999987
No 39
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=95.54 E-value=0.0053 Score=53.75 Aligned_cols=40 Identities=38% Similarity=0.748 Sum_probs=35.1
Q ss_pred cccceeEEEEeecCCCCc-ceEEEeccCCCCCCCCceEEEE
Q psy403 176 QLDHAVLVVGYGTDENGN-DYWLVKNSWNTTWGDEGYIKMA 215 (233)
Q Consensus 176 ~~~haV~vVGyg~~~~~~-~yWiv~nswg~~WG~~Gy~~i~ 215 (233)
...||+++.|-..+++|. -=|.|.||||.+=|.+||+-+.
T Consensus 360 LmTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 360 LMTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred HHHHHHHhhccccccCCCceeeEeecccccccCCCceEeeh
Confidence 468999999999888765 5699999999999999999764
No 40
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.1 Score=46.29 Aligned_cols=44 Identities=39% Similarity=0.860 Sum_probs=37.0
Q ss_pred ccccceeEEEEeecCCC---------CcceEEEeccCCCCCCCCceEEEEecC
Q psy403 175 TQLDHAVLVVGYGTDEN---------GNDYWLVKNSWNTTWGDEGYIKMARNR 218 (233)
Q Consensus 175 ~~~~haV~vVGyg~~~~---------~~~yWiv~nswg~~WG~~Gy~~i~r~~ 218 (233)
+..+|||++|||...-. +..-||||||||++||++||++|....
T Consensus 262 ~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 262 ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 45689999999985432 345999999999999999999998864
No 41
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=91.10 E-value=0.5 Score=35.27 Aligned_cols=60 Identities=23% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403 78 PEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW 149 (233)
Q Consensus 78 ~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw 149 (233)
...+.++|+++|.+..||.+.+....... ....+. .....|.|+|+||... + ++++..+|
T Consensus 85 ~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~-----~~~~~H~vvi~Gy~~~--~--~~~v~DP~ 144 (144)
T PF13529_consen 85 SDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD-----GTYGGHYVVIIGYDED--G--YVYVNDPW 144 (144)
T ss_dssp TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE-----E-TTEEEEEEEEE-SS--E---EEEE-TT
T ss_pred cCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC-----CCcCCEEEEEEEEeCC--C--EEEEeCCC
Confidence 35688999999999889999987421111 111121 1356899999999872 1 56655443
No 42
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=85.93 E-value=3.1 Score=34.47 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHhcCCeEEEEeccCcccc--ccccceEe--CCCCC---CCCCCeeEEEeeeeecCCCCceeEEeec
Q psy403 80 GDEYKLKAAVATIGPVSIAIDASHQSFQ--FYSEGVYY--EPECN---STQLDHAVLVVGYGTDENGNDYWLVKNS 148 (233)
Q Consensus 80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~--~Y~~Giy~--~~~c~---~~~~~Hav~ivGyg~~~~~~~ywivkNS 148 (233)
-+.++|..+|...||+.+-+++.. +. .-++-... ...|- ....+|-|+|+||+. ..+-++++|=
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~~--L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~---~~~~~~yrdP 181 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDASL--LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDA---ATKEFEYRDP 181 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEcccc--ccChhhcccccccccccccCCCCCccEEEEEEEeecC---CCCeEEEeCC
Confidence 478999999999999888887631 11 00111111 11221 235689999999986 3445665553
No 43
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=83.23 E-value=4.8 Score=32.26 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW 149 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw 149 (233)
+-+++++++.++-|+.+..+... + . +....+||+.++||-...++.++.++=|=|
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~v~-------~------~-~~~~~gHAlavvGya~~~~g~~~y~~WNPW 144 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADRVE-------Q------T-NGPHAGHALAVVGYAKPNNGQKTYYFWNPW 144 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEETT-------S------C-TTB--EEEEEEEEEEEETTSEEEEEEE-TT
T ss_pred CHHHHHHHHHcCCCeEEEecccc-------c------C-CCCccceeEEEEeeeecCCCCeEEEEeCCc
Confidence 68899999999888877665421 1 1 223568999999998756678899998988
No 44
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=73.94 E-value=11 Score=32.70 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEee
Q psy403 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKN 147 (233)
Q Consensus 82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkN 147 (233)
.+.|++.|.+..||.+.++.. +..|... | .......|.++|+||++ .+..+.++-.
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~-~----~~~~~~~H~i~v~G~d~--~~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPN-Y----YKKHHADHYIVVYGYDE--EEDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcc-c----cccccCCcEEEEEEEeC--CCCEEEEEcC
Confidence 457888888866999998762 3334321 1 12335689999999985 2445555544
No 45
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.18 E-value=19 Score=29.08 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=36.0
Q ss_pred EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403 75 VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW 149 (233)
Q Consensus 75 ~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw 149 (233)
..+...+..+|+..|.+..||.+-... |.. ..-|+|+|+||++ .++..-+.|
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~--------------~s~H~v~itgyDk-----~n~yynDpy 167 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS--------------YSIHSVLITGYDK-----YNIYYNDPY 167 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc--------------cceeeeEeecccc-----cceEecccc
Confidence 345556899999999999997765432 322 3359999999987 344444555
No 46
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=57.14 E-value=3.6 Score=31.91 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.7
Q ss_pred CceeEEeecCCcccccc-ccceeccC
Q psy403 140 NDYWLVKNSWNTTWGDE-GYIKMARN 164 (233)
Q Consensus 140 ~~ywivkNSwg~~wg~~-G~~~~~r~ 164 (233)
.+.=+|+|-||++.|.. |.|++||.
T Consensus 18 ~~pe~V~NV~GSSAGAGSGeFHvYR~ 43 (142)
T PF06658_consen 18 PPPEFVRNVQGSSAGAGSGEFHVYRA 43 (142)
T ss_pred CCCeeeccccccccccCccHHHHHHH
Confidence 45568999999999976 78999875
No 47
>KOG4128|consensus
Probab=53.56 E-value=1.9 Score=38.06 Aligned_cols=40 Identities=35% Similarity=0.592 Sum_probs=31.3
Q ss_pred ccceeEEEEeec-CC--CCcceEEEeccCCCCCCCCceEEEEe
Q psy403 177 LDHAVLVVGYGT-DE--NGNDYWLVKNSWNTTWGDEGYIKMAR 216 (233)
Q Consensus 177 ~~haV~vVGyg~-~~--~~~~yWiv~nswg~~WG~~Gy~~i~r 216 (233)
-+||+++.+-|. +. .+--=|-|.||||.+-|.+|+..|..
T Consensus 371 mthAml~T~v~~kd~~~g~~~~~rVenswgkd~gkkg~~~mt~ 413 (457)
T KOG4128|consen 371 MTHAMLLTSVGLKDPATGGLNEHRVENSWGKDLGKKGVNKMTA 413 (457)
T ss_pred HHHHHHhhhccccCcccCCchhhhhhchhhhhccccchhhhhH
Confidence 479999988772 22 34567999999999999999977643
No 48
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=49.07 E-value=41 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeee
Q psy403 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGT 135 (233)
Q Consensus 81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~ 135 (233)
+.+++.+.|.++|||-++..+ . ......|+++|+|-..
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~-P----------------~~~~~~H~~ViTGI~~ 134 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEA-P----------------GDSWVAHASVITGIDG 134 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecC-C----------------CCcceeeEEEEEeecC
Confidence 588999999999999988543 1 1123468888888764
No 49
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=46.62 E-value=17 Score=26.70 Aligned_cols=23 Identities=35% Similarity=0.778 Sum_probs=14.6
Q ss_pred cccceeEEEEeecCCCCcceEEEeccC
Q psy403 176 QLDHAVLVVGYGTDENGNDYWLVKNSW 202 (233)
Q Consensus 176 ~~~haV~vVGyg~~~~~~~yWiv~nsw 202 (233)
...|.|+|+||..+. +.+|..+|
T Consensus 122 ~~~H~vvi~Gy~~~~----~~~v~DP~ 144 (144)
T PF13529_consen 122 YGGHYVVIIGYDEDG----YVYVNDPW 144 (144)
T ss_dssp TTEEEEEEEEE-SSE-----EEEE-TT
T ss_pred cCCEEEEEEEEeCCC----EEEEeCCC
Confidence 357999999999742 56665554
No 50
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=36.52 E-value=1.2e+02 Score=22.22 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=24.8
Q ss_pred HHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeee
Q psy403 85 LKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYG 134 (233)
Q Consensus 85 i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg 134 (233)
++++|.+.-||.+.++. .+ .....+|.++|+||.
T Consensus 70 ~~~~l~~~~Pvi~~~~~---~~-------------~~~~~gH~vVv~g~~ 103 (141)
T cd02549 70 LLRQLAAGHPVIVSVNL---GV-------------SITPSGHAMVVIGYD 103 (141)
T ss_pred HHHHHHCCCeEEEEEec---Cc-------------ccCCCCeEEEEEEEc
Confidence 77888888898887653 00 112467999999997
No 51
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=31.81 E-value=1.9e+02 Score=23.29 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403 83 YKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI 159 (233)
Q Consensus 83 ~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~ 159 (233)
+.|+++|.+..||...-.. ....||.+|-||.. ..|+-+-=+|+-. .+|||
T Consensus 141 ~~i~~el~~~rPV~~~g~~--------------------~~~GHawViDGy~~----~~~~H~NwGW~G~--~nGyy 191 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNS--------------------KSGGHAWVIDGYDS----DGYFHCNWGWGGS--SNGYY 191 (192)
T ss_dssp HHHHHHHHTT--EEEEEEE--------------------TTEEEEEEEEEEES----SSEEEEE-SSTTT--T-EEE
T ss_pred HHHHHHHHcCCCEEEEEec--------------------CCCCeEEEEcCccC----CCeEEEeeCccCC--CCCcc
Confidence 4567777777776544211 01189999999954 3566665455322 34554
No 52
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=22.52 E-value=1.1e+02 Score=24.71 Aligned_cols=30 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred cccceeEEEEeecCCCCcceEEEeccCCCC
Q psy403 176 QLDHAVLVVGYGTDENGNDYWLVKNSWNTT 205 (233)
Q Consensus 176 ~~~haV~vVGyg~~~~~~~yWiv~nswg~~ 205 (233)
...||++||||-.-.++.++.++=|=|-++
T Consensus 118 ~~gHAlavvGya~~~~g~~~y~~WNPW~~~ 147 (175)
T PF05543_consen 118 HAGHALAVVGYAKPNNGQKTYYFWNPWWND 147 (175)
T ss_dssp --EEEEEEEEEEEETTSEEEEEEE-TT-SS
T ss_pred ccceeEEEEeeeecCCCCeEEEEeCCccCC
Confidence 467999999997656778899988887543
Done!