Query psy4031
Match_columns 115
No_of_seqs 113 out of 202
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:38:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qor_A Nuclear migration prote 55.4 6.9 0.00024 26.4 2.3 32 21-54 13-48 (121)
2 1e9y_A Urease subunit alpha; h 55.0 24 0.00083 27.4 5.5 56 34-89 77-137 (238)
3 1wfi_A Nuclear distribution ge 44.2 9.8 0.00033 25.8 1.6 23 32-54 13-39 (131)
4 3qga_A UREA2, fusion of urease 42.9 45 0.0016 25.6 5.3 55 34-89 77-137 (225)
5 1wgv_A KIAA1068 protein; CS do 34.2 21 0.00073 23.8 2.1 23 32-54 25-50 (124)
6 1t6a_A Rbstp2229 gene product; 32.5 21 0.00072 25.2 1.8 14 36-49 78-91 (126)
7 4f98_A Hypothetical protein; P 29.5 53 0.0018 20.8 3.2 30 48-78 26-55 (69)
8 2rh0_A NUDC domain-containing 27.8 35 0.0012 24.0 2.4 23 32-54 19-43 (157)
9 2o30_A Nuclear movement protei 27.1 36 0.0012 23.0 2.2 22 32-53 10-33 (131)
10 3ghm_A A disintegrin and metal 23.9 35 0.0012 28.0 2.0 15 40-54 288-302 (410)
11 3pg7_A Neurofibromin; SEC lipi 23.0 36 0.0012 25.7 1.8 19 71-89 18-36 (256)
12 3rj2_X ORF158L protein, putati 21.4 67 0.0023 22.8 2.8 46 32-77 76-122 (138)
No 1
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=55.35 E-value=6.9 Score=26.41 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=23.2
Q ss_pred eecCChhhhccccceeeEEEEEEcCCC----eeeeeEe
Q psy4031 21 GHRRSPYDYAARAQPRNAKVNIILPEH----SLVRQIH 54 (115)
Q Consensus 21 Gyn~pl~~~l~d~~~d~~~l~ViLPEG----A~~i~v~ 54 (115)
|=..|.+.+ .+..++++++|-||+| |++++|.
T Consensus 13 G~~~~~y~W--~Qt~~eV~v~V~lp~~~~~~~kdv~V~ 48 (121)
T 3qor_A 13 GADLPNYRW--TQTLSELDLAVPFCVNFRLKGKDMVVD 48 (121)
T ss_dssp SCBCSSCEE--EECSSEEEEEEECCCSSCCCGGGEEEE
T ss_pred CCcCCCEEE--EEccceEEEEEECCCCCcccccceEEE
Confidence 334454444 7888999999999998 5676653
No 2
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=54.98 E-value=24 Score=27.39 Aligned_cols=56 Identities=11% Similarity=0.274 Sum_probs=41.7
Q ss_pred ceeeEEEEEEcCCCeeeeeEeCCcceeeccccceEEecc-----CCCCcEEEEEeccCccc
Q psy4031 34 QPRNAKVNIILPEHSLVRQIHTPYPVSSQSDGTHSTYLD-----TAGRPMITLRAHNLVEN 89 (115)
Q Consensus 34 ~~d~~~l~ViLPEGA~~i~v~~P~~v~~~~~~~~~TYLD-----t~GRp~v~l~~~Nlvd~ 89 (115)
.++++.|.-.+|.|-+-|.|+.|+.-...-.--..-+-| ..||+.++|+-.|.-|.
T Consensus 77 mi~~vqVEatFpDGTkLVTVh~PI~~~~gmiPGei~~~~g~I~lN~gr~~~~l~V~NtGDR 137 (238)
T 1e9y_A 77 MIHEVGIEAMFPDGTKLVTVHTPIEANGKLVPGELFLKNEDITINEGKKAVSVKVKNVGDR 137 (238)
T ss_dssp HCCEEEEEEEETTEEEEEEEECCSCCCSSCCTTCEECCSCEEETTTTCCCCEEEEEECSSS
T ss_pred hcceeeEEEEcCCCCEEEEeecCCCcccCCCCCeEEcCCCCeeeCCCCCeEEEEEEeCCCC
Confidence 578899999999999999999998754321122222333 47999999999998764
No 3
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=44.23 E-value=9.8 Score=25.78 Aligned_cols=23 Identities=0% Similarity=-0.094 Sum_probs=19.0
Q ss_pred ccceeeEEEEEEcCCC----eeeeeEe
Q psy4031 32 RAQPRNAKVNIILPEH----SLVRQIH 54 (115)
Q Consensus 32 d~~~d~~~l~ViLPEG----A~~i~v~ 54 (115)
.+.-+++.++|-||+| +++++|.
T Consensus 13 ~Qt~~~V~i~I~lp~~~~~~~kdv~V~ 39 (131)
T 1wfi_A 13 TQTLAELDLAVPFRVSFRLKGKDVVVD 39 (131)
T ss_dssp EECSSEEEEEECCCCSSCCCTTSEEEE
T ss_pred EecCCEEEEEEECCCCCcccccceEEE
Confidence 6778899999999998 6777664
No 4
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=42.87 E-value=45 Score=25.64 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=40.5
Q ss_pred ceeeEEEEEEcCCCeeeeeEeCCcceeeccccceE-Eecc-----CCCCcEEEEEeccCccc
Q psy4031 34 QPRNAKVNIILPEHSLVRQIHTPYPVSSQSDGTHS-TYLD-----TAGRPMITLRAHNLVEN 89 (115)
Q Consensus 34 ~~d~~~l~ViLPEGA~~i~v~~P~~v~~~~~~~~~-TYLD-----t~GRp~v~l~~~Nlvd~ 89 (115)
.++++.|.-.+|.|-+-|.|+-|+.-.+. .--.. -.-| ..||+.++++-.|.-|.
T Consensus 77 ml~~vqVEatFpDGTkLVTVh~PI~~~~~-~PGei~~~~~g~I~lN~gr~~~~l~V~NtGDR 137 (225)
T 3qga_A 77 MVPDLGVEANFPDGTKLVTVNWPIEPDDF-KAGEIKFASDKDIELNAGKEITELKVTNKGPK 137 (225)
T ss_dssp HCSEEEEEEEETTEEEEEEEESCBCCCSC-CTTCEECSCSCCEETTTTCCCEEEEEEECSSS
T ss_pred hhccceeeEEcCCCCEEEEeccCccCCCC-CCCeEeccCCCceecCCCCceEEEEEEECCCC
Confidence 47889999999999999999999874321 11122 1111 57999999999998764
No 5
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=34.18 E-value=21 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.7
Q ss_pred ccceeeEEEEEEcCCCe---eeeeEe
Q psy4031 32 RAQPRNAKVNIILPEHS---LVRQIH 54 (115)
Q Consensus 32 d~~~d~~~l~ViLPEGA---~~i~v~ 54 (115)
.+.-+++.++|-||+|. ++++|.
T Consensus 25 ~Qt~~~V~i~I~lp~~~~~~kdv~V~ 50 (124)
T 1wgv_A 25 SQDYTDLEVRVPVPKHVVKGKQVSVA 50 (124)
T ss_dssp EEETTEEEEEEECCTTCCSGGGEEEE
T ss_pred EEcccEEEEEEEcCCCCCchhheEEE
Confidence 77888999999999975 676653
No 6
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=32.51 E-value=21 Score=25.22 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.4
Q ss_pred eeEEEEEEcCCCee
Q psy4031 36 RNAKVNIILPEHSL 49 (115)
Q Consensus 36 d~~~l~ViLPEGA~ 49 (115)
+.-.+.|+||+||+
T Consensus 78 ~~~fIQi~LP~~AT 91 (126)
T 1t6a_A 78 EETFIDIALPPGAT 91 (126)
T ss_dssp TEEEEEEECCTTCC
T ss_pred CcceEEEECCCCCC
Confidence 35567888888886
No 7
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=29.49 E-value=53 Score=20.78 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=19.2
Q ss_pred eeeeeEeCCcceeeccccceEEeccCCCCcE
Q psy4031 48 SLVRQIHTPYPVSSQSDGTHSTYLDTAGRPM 78 (115)
Q Consensus 48 A~~i~v~~P~~v~~~~~~~~~TYLDt~GRp~ 78 (115)
|+.|.+..+-. .-.-+..+-||+|..|+.-
T Consensus 26 akVis~t~~~~-~C~Vvpa~MtY~DS~G~~~ 55 (69)
T 4f98_A 26 KNVLHRTDNST-RTGVVPVTVVYEDHSGELH 55 (69)
T ss_dssp SEEEEECCCTT-CCSEEEEEEEEECTTSCEE
T ss_pred eeEEEecCCCC-ccceEccEEEEEcCCCCEE
Confidence 45566654422 3334456779999999876
No 8
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=27.78 E-value=35 Score=24.01 Aligned_cols=23 Identities=9% Similarity=0.015 Sum_probs=18.7
Q ss_pred ccceeeEEEEEEcCCC--eeeeeEe
Q psy4031 32 RAQPRNAKVNIILPEH--SLVRQIH 54 (115)
Q Consensus 32 d~~~d~~~l~ViLPEG--A~~i~v~ 54 (115)
....+++.|+|-||+| +++|+|.
T Consensus 19 ~Qt~~eV~v~I~lp~~~~~kdv~V~ 43 (157)
T 2rh0_A 19 YQTLEEVFIEVQVPPGTRAQDIQCG 43 (157)
T ss_dssp EECSSEEEEEEECCTTCCGGGEEEE
T ss_pred EecCCEEEEEEECCCCCcccceEEE
Confidence 6778899999999998 5677663
No 9
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=27.05 E-value=36 Score=22.96 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=15.0
Q ss_pred ccceeeEEEEEEcCCCe--eeeeE
Q psy4031 32 RAQPRNAKVNIILPEHS--LVRQI 53 (115)
Q Consensus 32 d~~~d~~~l~ViLPEGA--~~i~v 53 (115)
...-+++.|+|-||+|+ ++++|
T Consensus 10 ~Qt~~~V~i~I~lp~~~~~kdv~V 33 (131)
T 2o30_A 10 DQELNEINIQFPVTGDADSSAIKI 33 (131)
T ss_dssp EEETTEEEEEEECC---CCSCEEE
T ss_pred EecCCEEEEEEECCCCCCccceEE
Confidence 56678899999999984 56655
No 10
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A*
Probab=23.87 E-value=35 Score=27.96 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=12.4
Q ss_pred EEEEcCCCeeeeeEe
Q psy4031 40 VNIILPEHSLVRQIH 54 (115)
Q Consensus 40 l~ViLPEGA~~i~v~ 54 (115)
--+.+|+||++|+|.
T Consensus 288 ~v~~IP~GA~~I~I~ 302 (410)
T 3ghm_A 288 TFLTVTPNLTSVYIA 302 (410)
T ss_dssp EEEEECTTCEEEEEE
T ss_pred EEEecCCCceEEEEE
Confidence 346789999999985
No 11
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=23.04 E-value=36 Score=25.72 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.3
Q ss_pred ccCCCCcEEEEEeccCccc
Q psy4031 71 LDTAGRPMITLRAHNLVEN 89 (115)
Q Consensus 71 LDt~GRp~v~l~~~Nlvd~ 89 (115)
.|..|||++++...++-.+
T Consensus 18 ~d~dGrpViv~~~~~l~~~ 36 (256)
T 3pg7_A 18 TSKAGNPIFYYVARRFKTG 36 (256)
T ss_dssp ECTTSCEEEEEEGGGCCBT
T ss_pred cCCCCCEEEEEEeecCCCC
Confidence 4789999999999998653
No 12
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=21.43 E-value=67 Score=22.76 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=36.7
Q ss_pred ccceeeEEEEEEcCCCeeeeeEeCCcceeeccccceEEecc-CCCCc
Q psy4031 32 RAQPRNAKVNIILPEHSLVRQIHTPYPVSSQSDGTHSTYLD-TAGRP 77 (115)
Q Consensus 32 d~~~d~~~l~ViLPEGA~~i~v~~P~~v~~~~~~~~~TYLD-t~GRp 77 (115)
+-.+|+.+=..-+|+.|.-++|+....+.-...+.-.-|.| |.|..
T Consensus 76 ~~~ed~~eG~m~vP~~Aa~~RIHAa~~~~~~nps~Vr~~y~~~~~~~ 122 (138)
T 3rj2_X 76 HGLEDVLEGSLAVPKDAAYARIHAAINVSLTNPGDVHMHYDETEGEQ 122 (138)
T ss_dssp CTTCSEEEEEEECCTTCCEEEEETTHHHHTTCGGGEEEEEETTTEEE
T ss_pred ccccccCccceecccchhhheehhcccccccCchheeeeecccccce
Confidence 44678888889999999999999988766566677778888 66754
Done!