Query psy4031
Match_columns 115
No_of_seqs 113 out of 202
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 23:38:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4031.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4031hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgva_ b.15.1.4 (A:) NudC dom 38.3 8.6 0.00062 24.0 2.2 22 32-53 25-49 (124)
2 d1wxma1 d.15.1.5 (A:8-80) A-Ra 32.0 13 0.00096 22.1 2.2 20 39-58 2-22 (73)
3 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 29.5 15 0.0011 22.0 2.2 20 39-58 3-23 (77)
4 d1t6aa_ d.129.8.1 (A:) Rbstp22 22.2 20 0.0014 23.6 1.8 14 36-49 78-91 (124)
5 d1ejfa_ b.15.1.2 (A:) Co-chape 20.9 31 0.0022 20.7 2.5 21 33-54 10-30 (110)
6 d4bcla_ b.75.1.1 (A:) Bacterio 19.1 61 0.0044 24.2 4.3 26 36-61 302-327 (359)
7 d1wxqa2 d.15.10.2 (A:320-395) 18.5 6.8 0.0005 23.5 -1.2 13 42-54 24-36 (76)
8 d2f2ha3 b.71.1.4 (A:586-665) P 18.1 20 0.0015 20.9 1.1 11 37-47 38-48 (80)
9 d1pfoa_ f.9.1.1 (A:) Perfringo 18.0 37 0.0027 26.8 2.9 44 12-55 371-427 (471)
10 d1i25a_ g.3.6.2 (A:) Huwentoxi 15.6 16 0.0012 19.0 0.2 9 11-19 24-32 (37)
No 1
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.26 E-value=8.6 Score=24.04 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.4
Q ss_pred ccceeeEEEEEEcCCC---eeeeeE
Q psy4031 32 RAQPRNAKVNIILPEH---SLVRQI 53 (115)
Q Consensus 32 d~~~d~~~l~ViLPEG---A~~i~v 53 (115)
.+.-++++++|-||+| +++|.+
T Consensus 25 ~Qt~~~V~i~i~lp~~~~k~kdv~v 49 (124)
T d1wgva_ 25 SQDYTDLEVRVPVPKHVVKGKQVSV 49 (124)
T ss_dssp EEETTEEEEEEECCTTCCSGGGEEE
T ss_pred EeECCEEEEEEEeCCCCcchhhEEE
Confidence 7788899999999998 566765
No 2
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.98 E-value=13 Score=22.09 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=14.9
Q ss_pred EEEEEcCCCeee-eeEeCCcc
Q psy4031 39 KVNIILPEHSLV-RQIHTPYP 58 (115)
Q Consensus 39 ~l~ViLPEGA~~-i~v~~P~~ 58 (115)
++||+||-|++- |++.+...
T Consensus 2 ~iRv~LPngq~T~V~vrpG~t 22 (73)
T d1wxma1 2 TVKVYLPNKQRTVVTVRDGMS 22 (73)
T ss_dssp EEEEECSSSCEEEEECCSSCB
T ss_pred eEEEEcCCCCeEEEEecCCCC
Confidence 589999999965 66666543
No 3
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.48 E-value=15 Score=22.03 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=15.1
Q ss_pred EEEEEcCCCeee-eeEeCCcc
Q psy4031 39 KVNIILPEHSLV-RQIHTPYP 58 (115)
Q Consensus 39 ~l~ViLPEGA~~-i~v~~P~~ 58 (115)
++||+||-|++- |++.+...
T Consensus 3 ~iRv~LPngq~T~V~vrpG~t 23 (77)
T d1c1yb_ 3 TIRVFLPNKQRTVVNVRNGMS 23 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCB
T ss_pred eEEEECCCCCeEEEEecCCCC
Confidence 689999999965 66665533
No 4
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.20 E-value=20 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.0
Q ss_pred eeEEEEEEcCCCee
Q psy4031 36 RNAKVNIILPEHSL 49 (115)
Q Consensus 36 d~~~l~ViLPEGA~ 49 (115)
++--+.|.||+||+
T Consensus 78 e~sfIqi~LP~~AT 91 (124)
T d1t6aa_ 78 EETFIDIALPPGAT 91 (124)
T ss_dssp TEEEEEEECCTTCC
T ss_pred ceeeEEEECCCCCC
Confidence 45568899999986
No 5
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.87 E-value=31 Score=20.68 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=15.8
Q ss_pred cceeeEEEEEEcCCCeeeeeEe
Q psy4031 33 AQPRNAKVNIILPEHSLVRQIH 54 (115)
Q Consensus 33 ~~~d~~~l~ViLPEGA~~i~v~ 54 (115)
+.-+++.++|.+| |++++++.
T Consensus 10 Qt~~~V~i~I~v~-~~~~~~v~ 30 (110)
T d1ejfa_ 10 DRRDYVFIEFCVE-DSKDVNVN 30 (110)
T ss_dssp ECSSEEEEEECCT-TEEEEEEE
T ss_pred ECCCEEEEEEEeC-CCCCceEE
Confidence 4567899999998 57777663
No 6
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Probab=19.14 E-value=61 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.361 Sum_probs=20.0
Q ss_pred eeEEEEEEcCCCeeeeeEeCCcceee
Q psy4031 36 RNAKVNIILPEHSLVRQIHTPYPVSS 61 (115)
Q Consensus 36 d~~~l~ViLPEGA~~i~v~~P~~v~~ 61 (115)
-++.++|+||+|-+.+.-..-|.-++
T Consensus 302 vd~q~kv~lPkGyK~ryaApqf~sqn 327 (359)
T d4bcla_ 302 VDTQLKIVLPKGYKIRYAAPQFRSQN 327 (359)
T ss_dssp EEEEEEEECCTTCEEEEEESCCSEEE
T ss_pred eeeEEEEEccCCceEeeccchhhhcc
Confidence 36789999999999887766665443
No 7
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.46 E-value=6.8 Score=23.52 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=11.2
Q ss_pred EEcCCCeeeeeEe
Q psy4031 42 IILPEHSLVRQIH 54 (115)
Q Consensus 42 ViLPEGA~~i~v~ 54 (115)
++||+||+-+++.
T Consensus 24 ~~Lp~GsTv~D~A 36 (76)
T d1wxqa2 24 FLMKKGSTPRDLA 36 (76)
T ss_dssp EEEETTCCHHHHH
T ss_pred EEeCCCCcHHHHH
Confidence 8999999988763
No 8
>d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3 {Escherichia coli [TaxId: 562]}
Probab=18.08 E-value=20 Score=20.92 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=7.8
Q ss_pred eEEEEEEcCCC
Q psy4031 37 NAKVNIILPEH 47 (115)
Q Consensus 37 ~~~l~ViLPEG 47 (115)
..+.+|+||+|
T Consensus 38 ~~~~~vylP~G 48 (80)
T d2f2ha3 38 AGDVQFYLPEG 48 (80)
T ss_dssp SCEEEEEECSS
T ss_pred CcEEEEEcCCc
Confidence 34667888877
No 9
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]}
Probab=17.97 E-value=37 Score=26.77 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=28.0
Q ss_pred cCcccceEeeecCChh-----hhcc--------ccceeeEEEEEEcCCCeeeeeEeC
Q psy4031 12 RYWHALYIPGHRRSPY-----DYAA--------RAQPRNAKVNIILPEHSLVRQIHT 55 (115)
Q Consensus 12 GGWky~ftiGyn~pl~-----~~l~--------d~~~d~~~l~ViLPEGA~~i~v~~ 55 (115)
||.=..|.|-|+-=++ +.+. .----+....|.||.+|+||+|..
T Consensus 371 g~yva~f~i~wde~~yd~~g~e~~~~k~w~gn~~~~ta~f~t~i~l~~narni~v~~ 427 (471)
T d1pfoa_ 371 GAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKA 427 (471)
T ss_dssp CSSCEEEEEEEEEEEECTTSCEEEEEEECTTTTCCBCSSEEEEEEECTTEEEEEEEE
T ss_pred ceEEEEEEEEeeecccCCCCcEecccccccCCCccccccceEEEecCCCceeeEEEE
Confidence 5666677877664222 1221 122235788999999999999853
No 10
>d1i25a_ g.3.6.2 (A:) Huwentoxin-II {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=15.62 E-value=16 Score=19.03 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=6.9
Q ss_pred ccCcccceE
Q psy4031 11 SRYWHALYI 19 (115)
Q Consensus 11 fGGWky~ft 19 (115)
-||||-.|.
T Consensus 24 ~ggwkck~n 32 (37)
T d1i25a_ 24 KGGWKCKFN 32 (37)
T ss_dssp CTTEEECSS
T ss_pred CCCceEeEe
Confidence 489998764
Done!