RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4031
(115 letters)
>gnl|CDD|218165 pfam04597, Ribophorin_I, Ribophorin I. Ribophorin I is an
essential subunit of oligosaccharyltransferase (OST),
which is also known as
Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase, (EC:2.4.1.119). OST catalyzes the
transfer of an oligosaccharide from dolichol
pyrophosphate to selected asparagine residues of nascent
polypeptides as they are translocated into the lumen of
the rough endoplasmic reticulum. Ribophorin I and OST48
are though to be responsible for OST catalytic activity.
Both yeast and mammalian proteins are glycosylated but
the sites are not conserved. Glycosylation may
contribute towards general solubility but is unlikely to
be involved in a specific biochemical function Most
family members are predicted to have a transmembrane
helix at the C terminus of this region.
Length = 429
Score = 81.5 bits (202), Expect = 2e-19
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 36 RNAKVNIILPEHSLVRQIHTPYPVSSQSDGTHSTYLDTAGRPMITLRAHNLVENHIE-DI 94
N + +ILPE + ++ TP+P+ S +YLDT GRP++TL NLV+ H + D+
Sbjct: 336 DNVTLKVILPEGAEDIKVETPFPIDSVELELEKSYLDTKGRPVVTLEKKNLVDEHRDQDV 395
Query: 95 EIEYEFSKSYLGKEPLL 111
+ Y++SKS + ++PLL
Sbjct: 396 LVTYKYSKSAILRKPLL 412
>gnl|CDD|215249 PLN02454, PLN02454, triacylglycerol lipase.
Length = 414
Score = 27.9 bits (62), Expect = 1.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 14 WHALYIPGHRRSPYD-YAARAQP-----------RNAKVNIILPEHSL 49
W +Y RSP+ +AR+Q ++ K++I+L HSL
Sbjct: 190 WLTIYTSDDPRSPFTKLSARSQLLAKIKELLERYKDEKLSIVLTGHSL 237
>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 789
Score = 27.1 bits (60), Expect = 2.2
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 3 SARVTWARSRYWHALYIPGHRRSPYDYAARAQPRNAKVNI 42
+A+ W Y++ + + + + +A+ AQP K+ I
Sbjct: 547 NAKYPWISVNYYYDAIVNNAKGNAHKFASFAQPGPIKLYI 586
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 26.4 bits (58), Expect = 3.5
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 68 STYLDTAGRPMITLRAHNLVENHIEDIEIEYEF 100
+ YL ++ ++A NL+ N ++ ++EY+
Sbjct: 215 TDYLVITSE-ILRIKADNLLPNFEDETKLEYDL 246
>gnl|CDD|164985 PHA02590, PHA02590, hypothetical protein; Provisional.
Length = 105
Score = 25.3 bits (55), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 84 HNLVENHIE--DIEIEYEFSKSYLGKE 108
+ + E++IE + EIE+ F K Y K+
Sbjct: 44 YGIREDNIELFNNEIEFMFKKEYKNKD 70
>gnl|CDD|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second
domain of the Nad11/75-kDa subunit of the NADH-quinone
oxidoreductase/respiratory complex I/NADH
dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G
subunit of alphaproteobacteria NDH-1. The NADH-quinone
oxidoreductase is the first energy-transducting complex
in the respiratory chains of many prokaryotes and
eukaryotes. Mitochondrial complex I and its bacterial
counterpart, NDH-1, function as a redox pump that uses
the redox energy to translocate H+ ions across the
membrane, resulting in a significant contribution to
energy production. The nad11 gene codes for the largest
(75 kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Paracoccus denitrificans, this subunit is
encoded by the nqo3 gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The Nad11/Nqo3 subunit is made of two domains: the first
contains three binding sites for FeS clusters (the fer2
domain), the second domain (this CD), is of unknown
function or, as postulated, has lost an ancestral
formate dehydrogenase activity that became redundant
during the evolution of the complex I enzyme. Although
only vestigial sequence evidence remains of a
molybdopterin binding site, this protein domain belongs
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 375
Score = 26.1 bits (58), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 69 TYLDTAGRPMITLRAHNLVENHIEDIEI 96
TY++T GR T +A + + ED +I
Sbjct: 340 TYVNTEGRVQQTRKAVSPPGDAREDWKI 367
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 25.8 bits (57), Expect = 6.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 70 YLDTAGRPMITLRAHNLVENHIEDIEI--EY--EFSKSYLGKEP 109
L AG+P+I L +E+I + Y E + Y G
Sbjct: 26 LLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE 69
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 25.6 bits (57), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 69 TYLDTAGRPMITLRAHNLVENHIEDIEIEYEFSKSYLGK 107
TY++T GR + RA ED I S LGK
Sbjct: 563 TYVNTEGRVQLANRAVFPPGEAKEDWAILRALSD-VLGK 600
>gnl|CDD|202848 pfam03995, Inhibitor_I36, Peptidase inhibitor family I36. This
domain is currently only found in a small set of S.
coelicolor secreted proteins. There are four conserved
cysteines that probably form two disulphide bonds.
Proteins 2SCK31.15C and SCO3675 also have probable
beta-propellers at their C-termini. This family
includes a known peptidase inhibitor of known
structure. This protein has a crystallin like fold
pfam00030 and is distantly related by sequence. It is
not known whether other members of this family are
peptidase inhibitors.
Length = 96
Score = 24.8 bits (54), Expect = 8.0
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 2 NSARVTWARSRYWHALYIPGHRRSPYDYAARAQPR----NAKVNIILPEHSLVRQIHTP 56
N R W R+ +Y + S YAAR PR N + + H V +
Sbjct: 38 NKIRSYWNRTNGTACVYRDNYGGSGVWYAARTLPRGDCYNGDLVGTVSSHKFVASLSEC 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,948,512
Number of extensions: 493847
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 17
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)