RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4031
         (115 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 39/89 (43%)

Query: 24  RSPYDYAARAQPRNAKVNII---LPEHSLVRQIHTPYPVSSQSDGTHSTYLDTAGRPMIT 80
           R P+    R      K+      LP       + +P+         HS  L         
Sbjct: 406 RIPFS--ER------KLKFSNRFLP-------VASPF---------HSHLLV-------- 433

Query: 81  LRAHNLVENHIEDIEIEYEFSKSYLGKEP 109
             A +L+   +    +   F+   + + P
Sbjct: 434 -PASDLINKDLVKNNV--SFNAKDI-QIP 458


>1ikp_A Exotoxin A; transferase; 1.45A {Pseudomonas aeruginosa} SCOP:
           b.29.1.7 d.166.1.1 f.1.5.1 PDB: 1ikq_A 1xk9_A* 1dma_A*
           1aer_A* 1zm9_B* 1zm3_B* 1zm2_B* 1zm4_B* 2zit_B* 3b82_B*
           3b78_B* 3b8h_B*
          Length = 613

 Score = 25.7 bits (55), Expect = 5.2
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 12  RYWHALYIPGHRRSPYDYAARAQP-------RNAKVNIILPEHSLVRQIHTPYPVSSQSD 64
             W   YI G     Y YA   +P         A + + +P  SL     T   +++   
Sbjct: 464 AIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEA 523

Query: 65  GTHSTYL 71
                 L
Sbjct: 524 AGEVERL 530


>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
           initiative, nysgrc, P biology, oxidoreductase; 1.50A
           {Methanocaldococcus jannaschii} PDB: 3rhd_A*
          Length = 486

 Score = 25.6 bits (57), Expect = 5.2
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 77  PMITLRAHNLVENHIED 93
           P+I++     VE  +E 
Sbjct: 316 PLISVEHAEWVEKVVEK 332


>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
           dehydrogenase; oxidoreductase; 1.82A {Streptococcus
           mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
           2qe0_A* 2esd_A* 1qi1_A*
          Length = 475

 Score = 24.8 bits (55), Expect = 7.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 77  PMITLRAHNLVENHIED 93
           P+I  ++ + VE  I D
Sbjct: 324 PLIDTKSADYVEGLIND 340


>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
           genomics, protein structure initiative, dehydroge
           PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
          Length = 505

 Score = 24.8 bits (55), Expect = 8.4
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 77  PMITLRAHNLVENHIED 93
           P+I  ++   ++  I+D
Sbjct: 333 PVIDEKSAAFIQGLIDD 349


>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
           glucose 1-phosphate, glycolysis, regulation, catatysis,
           oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
           SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
           1uxu_A* 1uxv_A* 1ky8_A*
          Length = 501

 Score = 24.8 bits (55), Expect = 8.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 77  PMITLRAHNLVENHIED 93
           P+I+  A + +   IED
Sbjct: 338 PLISPSAVDEMMAAIED 354


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,802,461
Number of extensions: 91678
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 17
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)