RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4031
         (115 letters)



>d1ikpa2 d.166.1.1 (A:395-606) Exotoxin A, C-terminal domain
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 212

 Score = 27.4 bits (60), Expect = 0.40
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 7/65 (10%)

Query: 14  WHALYIPGHRRSPYDYAARAQP-------RNAKVNIILPEHSLVRQIHTPYPVSSQSDGT 66
           W   YI G     Y YA   +P         A + + +P  SL     T   +++     
Sbjct: 72  WRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAG 131

Query: 67  HSTYL 71
               L
Sbjct: 132 EVERL 136


>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
           acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 317

 Score = 25.5 bits (54), Expect = 1.8
 Identities = 11/78 (14%), Positives = 26/78 (33%)

Query: 8   WARSRYWHALYIPGHRRSPYDYAARAQPRNAKVNIILPEHSLVRQIHTPYPVSSQSDGTH 67
           W  +       +  HR      +   +   + ++      +       P+ +S   D T 
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 68  STYLDTAGRPMITLRAHN 85
             +  + G  ++TL  H+
Sbjct: 230 KMWDVSTGMCLMTLVGHD 247


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 441,369
Number of extensions: 17410
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 4
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)