Query psy4032
Match_columns 84
No_of_seqs 114 out of 1081
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:39:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_6 NADH-quinone oxidoreduc 100.0 2.6E-30 9E-35 183.0 6.4 80 2-83 90-169 (181)
2 1wui_S Periplasmic [NIFE] hydr 99.9 2.9E-26 1E-30 169.5 2.8 81 3-84 94-185 (267)
3 1h2a_S Hydrogenase; SO ligand, 99.9 7.3E-26 2.5E-30 170.9 2.0 81 3-84 144-235 (317)
4 1yq9_A Periplasmic [NIFE] hydr 99.9 1.5E-25 5E-30 165.6 2.6 81 3-84 92-182 (264)
5 3ayx_B Membrane-bound hydrogen 99.9 1.8E-25 6.1E-30 166.6 2.7 81 3-84 101-193 (283)
6 3rgw_S Membrane-bound hydrogen 99.9 5.2E-24 1.8E-28 162.1 4.9 80 3-83 95-183 (339)
7 2wpn_A Periplasmic [nifese] hy 99.9 2.3E-24 7.8E-29 162.7 2.9 80 3-83 135-238 (317)
8 3myr_A Hydrogenase (NIFE) smal 99.9 1.3E-24 4.5E-29 161.1 1.2 81 3-84 93-182 (269)
9 1yqw_A Periplasmic [NIFE] hydr 99.9 3.8E-24 1.3E-28 158.1 2.4 79 3-83 94-180 (264)
10 3uqy_S Hydrogenase-1 small cha 99.9 3E-24 1E-28 163.2 1.4 80 3-83 95-183 (335)
11 1cc1_S Hydrogenase (small subu 99.9 5.6E-24 1.9E-28 158.5 1.2 80 3-83 106-204 (283)
12 4ay9_B Follitropin subunit bet 49.1 5.8 0.0002 25.5 1.0 16 43-58 55-70 (111)
13 3e7n_A D-ribose high-affinity 42.1 22 0.00075 23.2 3.0 24 6-30 111-134 (142)
14 2wcv_A L-fucose mutarotase; ri 41.6 24 0.00083 23.1 3.2 24 6-30 109-132 (140)
15 1hcn_B Human chorionic gonadot 41.2 9 0.00031 25.7 1.0 18 42-59 60-77 (145)
16 3mvk_A Protein FUCU, protein R 40.4 26 0.0009 23.1 3.2 24 6-30 114-137 (148)
17 3dsa_A D-ribose high-affinity 39.8 22 0.00076 23.4 2.8 24 6-30 111-134 (142)
18 1ogd_A High affinity ribose tr 38.9 24 0.00083 22.9 2.8 24 6-30 100-123 (131)
19 2wcu_A FUCU, protein FUCU homo 37.9 25 0.00085 23.3 2.8 24 6-30 118-141 (149)
20 4a34_A RBSD/FUCU transport pro 36.7 26 0.00091 23.1 2.8 24 6-30 110-133 (147)
21 2ob5_A AGR_C_3656P, hypothetic 34.9 28 0.00095 23.2 2.7 24 6-30 120-143 (153)
22 3ikb_A Uncharacterized conserv 30.3 23 0.00077 24.6 1.7 21 4-24 112-132 (198)
23 1uuy_A CNX1, molybdopterin bio 30.3 41 0.0014 21.8 2.9 23 49-71 135-157 (167)
24 3fxt_A Nucleoside diphosphate- 29.4 49 0.0017 21.1 3.0 31 53-83 43-75 (113)
25 3p12_A D-ribose pyranase; carb 29.3 32 0.0011 22.8 2.2 24 6-30 103-128 (144)
26 1vk2_A Uracil-DNA glycosylase 28.3 38 0.0013 23.0 2.5 20 4-24 121-140 (204)
27 1ic9_A TH10AOX; three stranded 26.3 20 0.00067 17.6 0.5 10 48-57 11-20 (29)
28 3abd_X REV3, HREV3, DNA polyme 25.9 26 0.00088 19.5 1.1 15 54-68 37-51 (52)
29 2b7k_A SCO1 protein; metalloch 24.7 29 0.00098 22.5 1.3 32 51-83 161-196 (200)
30 1ui0_A Uracil-DNA glycosylase; 20.9 62 0.0021 22.0 2.5 20 4-24 105-124 (205)
No 1
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=99.96 E-value=2.6e-30 Score=182.97 Aligned_cols=80 Identities=43% Similarity=0.754 Sum_probs=75.4
Q ss_pred hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccccc
Q psy4032 2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW 81 (84)
Q Consensus 2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~~~ 81 (84)
.+|+++|||||+||+|||+|+|| ++||+| ++|++++|+++++|||+|||||||+|++|+++|++|++++++++..+.|
T Consensus 90 ~~l~~~~e~~p~pk~VIAvGsCA-~~GGi~-~~y~~~~gvd~iipVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~~~~ 167 (181)
T 3i9v_6 90 PVMRRVWEQMPDPKWVISMGACA-SSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERG 167 (181)
T ss_dssp HHHHHHHHSSCSSCCEEEEHHHH-HSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCCBCTTS
T ss_pred HHHHHHHHHcCCCceEEEeeccc-ccCCCC-CCCcccCCcccCCCccEEeeCCCCCHHHHHHHHHHHHHHHhhccccccc
Confidence 37899999999999999999999 999999 8999999999999999999999999999999999999999998887766
Q ss_pred cc
Q psy4032 82 YR 83 (84)
Q Consensus 82 ~~ 83 (84)
.+
T Consensus 168 ~~ 169 (181)
T 3i9v_6 168 ER 169 (181)
T ss_dssp CB
T ss_pred cc
Confidence 53
No 2
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=99.92 E-value=2.9e-26 Score=169.46 Aligned_cols=81 Identities=20% Similarity=0.344 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCc--cccCcccccc---c-ceeccCCCCCHHHHHHHHHHHH-HH----
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYS--VVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQ-KK---- 71 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~--~~~~v~~~v~---V-D~~IPGCPP~p~~i~~~l~~l~-~~---- 71 (84)
+++++||+|++||+|||+|||| ++||+|+.+|+ .+.|++++|+ | |++||||||+||+|+++|++|+ .+
T Consensus 94 ~l~~~~e~~~~ak~VIAvGsCA-~~GGi~a~~~n~t~~~gv~~vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ll~~g~~p~ 172 (267)
T 1wui_S 94 MLDICSRILPKAQAVIAYGTCA-TFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPE 172 (267)
T ss_dssp HHHHHHHHGGGSSEEEEESHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHhccCCEEEEeeecc-ccCCCCCCcCCCcCCCCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCcC
Confidence 5899999999999999999999 99999998665 7789999999 7 9999999999999999999975 44
Q ss_pred HhhcccccccccC
Q psy4032 72 VKRMKILQSWYRR 84 (84)
Q Consensus 72 i~~~~~~~~~~~~ 84 (84)
+++.+|++.||.+
T Consensus 173 ld~~~RP~~~~~~ 185 (267)
T 1wui_S 173 LDSLNRPTMFFGQ 185 (267)
T ss_dssp BCTTSCBHHHHSS
T ss_pred ccccCCchhhhCC
Confidence 6788899888853
No 3
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=99.91 E-value=7.3e-26 Score=170.89 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCC--CccccCcccccc---c-ceeccCCCCCHHHHHHHHHHHH-HH----
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYS--YSVVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQ-KK---- 71 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~--~~~~~~v~~~v~---V-D~~IPGCPP~p~~i~~~l~~l~-~~---- 71 (84)
+++++||+|++||+|||+|+|| ++||+|+.+ ++.+.|++++|+ | |++||||||+||+|+++|++|+ .+
T Consensus 144 ~l~~l~e~~~~ak~VIAvGsCA-~~GGi~a~~~npt~~~gv~~vvp~~~vpdi~IPGCPP~Pe~i~~~l~~lL~~g~~p~ 222 (317)
T 1h2a_S 144 MLDICSRILPKAQAVIAYGTCA-TFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPE 222 (317)
T ss_dssp HHHHHHHHGGGCSEEEEESHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccCCEEEEecccc-ccCCcCCCCCCCccCcCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999999999 999999874 558999999999 8 9999999999999999999986 43
Q ss_pred HhhcccccccccC
Q psy4032 72 VKRMKILQSWYRR 84 (84)
Q Consensus 72 i~~~~~~~~~~~~ 84 (84)
+++.+|++.||.+
T Consensus 223 Ld~~~RP~~~~~~ 235 (317)
T 1h2a_S 223 LDSLNRPTMFFGQ 235 (317)
T ss_dssp BCTTSCBHHHHSS
T ss_pred ccccCCchhhhcC
Confidence 7888899888853
No 4
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=99.91 E-value=1.5e-25 Score=165.60 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcccccc----cceeccCCCCCHHHHHHHHHHHHH----HH
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGILQLQK----KV 72 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v~----VD~~IPGCPP~p~~i~~~l~~l~~----~i 72 (84)
.++++||+|++||+|||+|+|| ++||+|+. +++...|++++++ +|++||||||+|++|+++|++|+. .+
T Consensus 92 ~~~~l~~~~~~~k~VIA~GsCA-~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ll~~~~p~L 170 (264)
T 1yq9_A 92 MYDICAEVAPKAKAVIAIGTCA-TYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTKGMPEL 170 (264)
T ss_dssp HHHHHHHHGGGSSEEEEEHHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHTCSCCB
T ss_pred HHHHHHHHhccCCEEEEecccc-ccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCCCHHHHHHHHHHHHhCCCCCc
Confidence 4899999999999999999999 99999976 6778899999998 899999999999999999999998 46
Q ss_pred hhcccccccccC
Q psy4032 73 KRMKILQSWYRR 84 (84)
Q Consensus 73 ~~~~~~~~~~~~ 84 (84)
++.+|++.||.+
T Consensus 171 d~~~RP~~~~~~ 182 (264)
T 1yq9_A 171 DKQGRPVMFFGE 182 (264)
T ss_dssp CTTSCBHHHHSS
T ss_pred cccCCchhhhCC
Confidence 778888888753
No 5
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=99.91 E-value=1.8e-25 Score=166.64 Aligned_cols=81 Identities=25% Similarity=0.298 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcccccc--cc---eeccCCCCCHHHHHHHHHH-HHHH---
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRIIP--VD---IYVPGCPPTAEALMYGILQ-LQKK--- 71 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v~--VD---~~IPGCPP~p~~i~~~l~~-l~~~--- 71 (84)
+++++||+|++||+|||+|+|| ++||+|+. +|+.+.|++++++ || ++||||||+|++|+++|++ |+.+
T Consensus 101 ~l~~~~~~~~~ak~VIA~GsCA-~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~~~Ll~G~~p 179 (283)
T 3ayx_B 101 FSEQLKRMADDAKAIISWGSCA-SWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVITYMLTFDRIP 179 (283)
T ss_dssp HHHHHHHHHHTEEEEEEEHHHH-HTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHcccCCEEEEeeecc-ccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCCCCHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999 99999987 6889999999999 99 9999999999999999999 5555
Q ss_pred -HhhcccccccccC
Q psy4032 72 -VKRMKILQSWYRR 84 (84)
Q Consensus 72 -i~~~~~~~~~~~~ 84 (84)
++++.|++.||.+
T Consensus 180 ~Ld~~~RP~~~y~~ 193 (283)
T 3ayx_B 180 ELDRQGRPKMFYSQ 193 (283)
T ss_dssp CBCTTSCBHHHHSS
T ss_pred CcccccCchhhhCC
Confidence 7888899988853
No 6
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=99.89 E-value=5.2e-24 Score=162.15 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCC--ccccCcccccc--cceeccCCCCCHHHHHHHHHHHHH-H----Hh
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSY--SVVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQK-K----VK 73 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~--~~~~~v~~~v~--VD~~IPGCPP~p~~i~~~l~~l~~-~----i~ 73 (84)
.++++||+|++||+|||+|+|| ++||+|+.++ +...+++++++ ||++||||||+|++|+++|++++. + ++
T Consensus 95 ~~e~l~e~~~~~k~VIAvGtCA-~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~i~~~l~~ll~~G~~p~LD 173 (339)
T 3rgw_S 95 FIEQLKYVAKDAKAIISWGSCA-SWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFDRIPELD 173 (339)
T ss_dssp HHHHHHHHHTTCSEEEEEHHHH-HTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHSSCCCBC
T ss_pred HHHHHHHHccCCCEEEEecccc-ccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 4899999999999999999999 9999998754 56789999998 999999999999999999999883 3 57
Q ss_pred hccccccccc
Q psy4032 74 RMKILQSWYR 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+++||..||.
T Consensus 174 ~~~RP~~fy~ 183 (339)
T 3rgw_S 174 RQGRPKMFYS 183 (339)
T ss_dssp TTSCBHHHHS
T ss_pred cccCchhhhC
Confidence 7888888875
No 7
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=99.89 E-value=2.3e-24 Score=162.67 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCC--CCCccccCccccc-----cc-ceeccCCCCCHHHHHHHHHHHHHHH--
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYH--YSYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKKV-- 72 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~--~~~~~~~~v~~~v-----~V-D~~IPGCPP~p~~i~~~l~~l~~~i-- 72 (84)
.+++++++|++||+|||+|||| ++||+|+ .+|+...++++++ ++ |++||||||+||+|+++|++|+.+.
T Consensus 135 ~~e~l~e~~~~ak~VIAvGsCA-~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I~IPGCPP~Pe~i~~~L~~ll~~~~~ 213 (317)
T 2wpn_A 135 MVDALKEFGPNAAAVLAVGTCA-AYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALDAIKK 213 (317)
T ss_dssp HHHHHHHHGGGEEEEEEEHHHH-HHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEecccc-ccCCCCCCCCCCccccCHHHHhhccCCCCCeEEeeCCCCCHHHHHHHHHHHHhcccc
Confidence 4899999999999999999999 9999997 4788889999998 67 9999999999999999999999877
Q ss_pred --------------hhccccccccc
Q psy4032 73 --------------KRMKILQSWYR 83 (84)
Q Consensus 73 --------------~~~~~~~~~~~ 83 (84)
++..|++.||.
T Consensus 214 ~~~~~g~~~~~p~Ld~~~RP~~~~~ 238 (317)
T 2wpn_A 214 NGLEGGLAEVVKVLDSDGRPTPFFG 238 (317)
T ss_dssp HHHHHHHHHHHTTBCTTSCBHHHHS
T ss_pred cccccccccCCCCccccCCchhhcC
Confidence 45667777764
No 8
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=99.89 E-value=1.3e-24 Score=161.11 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCC--CccccCccccc--ccceeccCCCCCHHHHHHHHHHHH-HH----Hh
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYS--YSVVRGCDRII--PVDIYVPGCPPTAEALMYGILQLQ-KK----VK 73 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~--~~~~~~v~~~v--~VD~~IPGCPP~p~~i~~~l~~l~-~~----i~ 73 (84)
.++.++|+|++||+|||+|+|| ++||+|+.+ ++...|+++++ +||++||||||+|++|+++|++|+ .+ ++
T Consensus 93 ~~e~l~e~~~~~k~VIA~G~CA-~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll~~G~~p~Ld 171 (269)
T 3myr_A 93 NYSILMETVEHAAAVIAVGTCA-AFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELD 171 (269)
T ss_dssp HHHHHHHHHTTCSEEEEEHHHH-HHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHHHHSSCCCBC
T ss_pred HHHHHHHHcccCCEEEEecccc-ccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence 4789999999999999999999 999999865 45678999999 999999999999999999999998 33 57
Q ss_pred hcccccccccC
Q psy4032 74 RMKILQSWYRR 84 (84)
Q Consensus 74 ~~~~~~~~~~~ 84 (84)
+.+|++.||.+
T Consensus 172 ~~~RP~~~y~~ 182 (269)
T 3myr_A 172 GYGRPLAFYGQ 182 (269)
T ss_dssp TTSCBHHHHSS
T ss_pred cccCchHHhCC
Confidence 78888888853
No 9
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=99.88 E-value=3.8e-24 Score=158.08 Aligned_cols=79 Identities=19% Similarity=0.368 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCccc--ccccceeccCCCCCHHHHHHHHHHHHH----HHhh
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDR--IIPVDIYVPGCPPTAEALMYGILQLQK----KVKR 74 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~--~v~VD~~IPGCPP~p~~i~~~l~~l~~----~i~~ 74 (84)
+++++||+|++||+|||+|+|| ++||+|+. +++...++++ .+|| ++||||||+|++|+++|++|+. .+++
T Consensus 94 ~~~~~~~~~~~~k~VIA~GsCA-~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~Pe~i~~~l~~ll~~~~p~Ld~ 171 (264)
T 1yqw_A 94 MIETTKKAAAKAKGIICIGTCS-AYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNPINFVGAVVHVLTKGIPDLDE 171 (264)
T ss_dssp HHHHHHHHHHTCSCEEEESHHH-HHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCHHHHHHHHHHHHHTCCCCBCT
T ss_pred HHHHHHHHhcCCCEEEEecccc-ccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCHHHHHHHHHHHHhCCCccccc
Confidence 5899999999999999999999 99999987 5667889987 6788 9999999999999999999998 5677
Q ss_pred ccccccccc
Q psy4032 75 MKILQSWYR 83 (84)
Q Consensus 75 ~~~~~~~~~ 83 (84)
.+|++.||.
T Consensus 172 ~~RP~~~~~ 180 (264)
T 1yqw_A 172 NGRPKLFYG 180 (264)
T ss_dssp TSCBHHHHS
T ss_pred cCCchhhcC
Confidence 788887775
No 10
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=99.88 E-value=3e-24 Score=163.22 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCC--ccccCcccccc--cceeccCCCCCHHHHHHHHHHHH-HH----Hh
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSY--SVVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQ-KK----VK 73 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~--~~~~~v~~~v~--VD~~IPGCPP~p~~i~~~l~~l~-~~----i~ 73 (84)
.++++||+|++||+|||+|+|| ++||+|+.++ +.+.|++++++ +|++||||||+|++|+++|++++ .+ ++
T Consensus 95 ~l~~l~e~~~~ak~VIAvGsCA-~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll~~G~~p~LD 173 (335)
T 3uqy_S 95 FIEKLKRAAAGASAIIAWGTCA-SWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD 173 (335)
T ss_dssp HHHHHHHHHHHEEEEEEEHHHH-HTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHTSCCCBC
T ss_pred HHHHHHHHccCCCEEEEecccc-ccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCCCCC
Confidence 4899999999999999999999 9999998754 47789999998 79999999999999999999986 33 57
Q ss_pred hccccccccc
Q psy4032 74 RMKILQSWYR 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+.+|++.||.
T Consensus 174 ~~~RP~~~y~ 183 (335)
T 3uqy_S 174 RMGRPLMFYG 183 (335)
T ss_dssp TTSCBHHHHS
T ss_pred ccCCchhhhC
Confidence 7889988885
No 11
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=99.87 E-value=5.6e-24 Score=158.45 Aligned_cols=80 Identities=13% Similarity=0.235 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCccccc-----cc-ceeccCCCCCHHHHHHHHHHHHHH---
Q psy4032 3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKK--- 71 (84)
Q Consensus 3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v-----~V-D~~IPGCPP~p~~i~~~l~~l~~~--- 71 (84)
+++++|++|++||+|||+|||| ++||+|+. +++...++++++ ++ |++||||||+||+|+++|++++..
T Consensus 106 ~le~l~~~~~~ak~VIAvGtCA-~~GGI~a~~~n~t~~~gv~~vl~~~~~~~p~i~IPGCPP~Pe~i~~~L~~l~~~~~~ 184 (283)
T 1cc1_S 106 MMELIRDLAPKSLATVAVGTCS-AYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN 184 (283)
T ss_dssp HHHHHHHHGGGSSEEEEESHHH-HHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccCCEEEEEeecc-ccCCcCCCCCCCcccccHHHHhhcccCCCceEEeeCCCCCHHHHHHHHHHHhhhhhH
Confidence 5899999999999999999999 99999976 677889999987 77 899999999999999999996542
Q ss_pred --------Hhhccccccccc
Q psy4032 72 --------VKRMKILQSWYR 83 (84)
Q Consensus 72 --------i~~~~~~~~~~~ 83 (84)
+++..|++.||.
T Consensus 185 ll~~~~p~Ld~~~RP~~~~~ 204 (283)
T 1cc1_S 185 PTEHPLPELDDDGRPLLFFG 204 (283)
T ss_dssp TTTSCCCCBCTTSCBHHHHS
T ss_pred HHhCCCCCccccCCchhhcC
Confidence 456677777764
No 12
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=49.14 E-value=5.8 Score=25.53 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=12.0
Q ss_pred cccccceeccCCCCCH
Q psy4032 43 RIIPVDIYVPGCPPTA 58 (84)
Q Consensus 43 ~~v~VD~~IPGCPP~p 58 (84)
++.-..+.||||||.-
T Consensus 55 ~~~y~tv~LpgC~pgV 70 (111)
T 4ay9_B 55 ELVYETVRVPGCAHHA 70 (111)
T ss_dssp EEEEEEEEECCCTTSC
T ss_pred CEEEEEEECCCccCCC
Confidence 4444569999999974
No 13
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=42.10 E-value=22 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=20.4
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
+.|++..+++.||.-|-|+ -||-+
T Consensus 111 ~Fy~~a~~a~aVVrTGE~~-pYaNi 134 (142)
T 3e7n_A 111 QFKKLTADSQAVIRSGECS-PYANV 134 (142)
T ss_dssp HHHHHHTTSSEEEECCCCS-TTCCE
T ss_pred HHHHHHhcceEEEECCCCC-ceeEE
Confidence 4588999999999999999 67653
No 14
>2wcv_A L-fucose mutarotase; ribose, pyranase, isomerase, fucose metabolism; HET: FUC; 1.90A {Escherichia coli}
Probab=41.60 E-value=24 Score=23.12 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=20.5
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|++..+++.||.-|-|+ -||-+
T Consensus 109 ~Fy~~ak~a~aVVrTGE~~-pYaNi 132 (140)
T 2wcv_A 109 AFYERAQKAFAIVITGERA-KYGNI 132 (140)
T ss_dssp HHHHHHTTSSEEEEECCCS-TTCCE
T ss_pred HHHHHHhCCeEEEECCCCC-cccEE
Confidence 4689999999999999999 66654
No 15
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=41.19 E-value=9 Score=25.71 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=13.7
Q ss_pred ccccccceeccCCCCCHH
Q psy4032 42 DRIIPVDIYVPGCPPTAE 59 (84)
Q Consensus 42 ~~~v~VD~~IPGCPP~p~ 59 (84)
+++..+.+.||||||+-+
T Consensus 60 ~e~~y~tv~LpgC~~gvd 77 (145)
T 1hcn_B 60 RDVRFESIRLPGCPRGVN 77 (145)
T ss_dssp EEEEEEEEECTTCCSSCC
T ss_pred CCEEEEEEEcCCCcCCCC
Confidence 455567899999998743
No 16
>3mvk_A Protein FUCU, protein RBSD; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; HET: PGE; 1.65A {Bifidobacterium longum subsp} SCOP: c.133.1.0
Probab=40.40 E-value=26 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|++..+++.||.-|-|+ -||-+
T Consensus 114 ~Fy~~~k~a~aVVrTGE~~-pYaNi 137 (148)
T 3mvk_A 114 AFYEQAKNAYCVIASGESA-QYANL 137 (148)
T ss_dssp HHHHHHTTCSEEEEECCCS-TTCCE
T ss_pred HHHHHHhCceEEEECCCCC-ceeeE
Confidence 4689999999999999999 56653
No 17
>3dsa_A D-ribose high-affinity transport system; D-ribose transport system, RBSD, decamer, csgid, transport protein, structural genomics; 2.45A {Salmonella typhimurium} PDB: 3e7n_A
Probab=39.77 E-value=22 Score=23.36 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=20.2
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|+...+++.||+-|-|+ -||-+
T Consensus 111 ~Fy~~~k~a~aVVrTGE~~-pYaNi 134 (142)
T 3dsa_A 111 QFKKLTADSQAVIRSGECS-PYANV 134 (142)
T ss_dssp HHHHHGGGSSEEEECCCCS-TTCCE
T ss_pred HHHHHHhcCeEEEECCCCC-ccceE
Confidence 4689999999999999999 56643
No 18
>1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A
Probab=38.90 E-value=24 Score=22.93 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=20.4
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|++.++++.||.-|-|+ -||-+
T Consensus 100 ~Fy~~~~~a~avVrTGE~~-pYaNi 123 (131)
T 1ogd_A 100 EFKLLTKDAKAVIRTGEFT-PYANC 123 (131)
T ss_dssp HHHHHGGGCSEEEECCCCS-TTCCE
T ss_pred HHHHHHhCceEEEECCCCC-cccEE
Confidence 5688999999999999999 66653
No 19
>2wcu_A FUCU, protein FUCU homolog; fucose, ribose, pyranase, mutarotase, alternative splicing, isomerase; HET: FUC; 1.90A {Mus musculus}
Probab=37.91 E-value=25 Score=23.32 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.5
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|++..+++.||+-|-|+ -||-+
T Consensus 118 ~Fy~~ak~a~aVVrTGE~~-pYaNi 141 (149)
T 2wcu_A 118 EFYERAKKAFAVVATGEMA-LYGNI 141 (149)
T ss_dssp HHHHHHHTSSEEEEECCCS-TTCCE
T ss_pred HHHHHHhCCeEEEECCCCC-cccEE
Confidence 4689999999999999999 66654
No 20
>4a34_A RBSD/FUCU transport protein family protein; isomerase; HET: FUL; 2.50A {Streptococcus pneumoniae} SCOP: c.133.1.0
Probab=36.71 E-value=26 Score=23.14 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=20.3
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|+...+++.||.-|-|+ -||-+
T Consensus 110 ~Fye~ak~a~aVVrTGE~~-pYaNi 133 (147)
T 4a34_A 110 DFYERSKKAYAIVATGETS-LYANI 133 (147)
T ss_dssp HHHHHHHSSSEEEEECCCS-TTCCE
T ss_pred HHHHHHhcceEEEEcCCCC-ceeeE
Confidence 4688999999999999999 66653
No 21
>2ob5_A AGR_C_3656P, hypothetical protein ATU2016; putavite sugar binding protein, S genomics, PSI-2, protein structure initiative; HET: MSE; 1.60A {Agrobacterium tumefaciens str} SCOP: c.133.1.1
Probab=34.85 E-value=28 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.5
Q ss_pred HHHHHhcCCCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLGPVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~~k~vIA~G~CAv~~GGi 30 (84)
..|++..+++.||+-|-|+ -+|-+
T Consensus 120 ~Fye~ak~a~aVVrTGE~~-pYaNi 143 (153)
T 2ob5_A 120 AFYEKAKQAYCVITTGETR-FYGCF 143 (153)
T ss_dssp HHHHHHHTSSEEEECSCCS-TTCCE
T ss_pred HHHHHHhcCeEEEECCCCC-cccEE
Confidence 4688999999999999999 66654
No 22
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans}
Probab=30.31 E-value=23 Score=24.61 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q psy4032 4 VSLLAQAMLGPVGVISMGGAA 24 (84)
Q Consensus 4 l~~~~e~~~~~k~vIA~G~CA 24 (84)
|++..+.++.+|++|++|.=|
T Consensus 112 l~~~i~l~~p~~liv~lG~~A 132 (198)
T 3ikb_A 112 HQPILDLLPDIQLTILIGNYA 132 (198)
T ss_dssp HHHHHTTCTTCCEEEEESHHH
T ss_pred HHHHHHhCCCCeEEEEeCHHH
Confidence 566678888889999999988
No 23
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=30.28 E-value=41 Score=21.77 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.8
Q ss_pred eeccCCCCCHHHHHHHHHHHHHH
Q psy4032 49 IYVPGCPPTAEALMYGILQLQKK 71 (84)
Q Consensus 49 ~~IPGCPP~p~~i~~~l~~l~~~ 71 (84)
+.+||+|-.....++.++.++..
T Consensus 135 ~~LPG~P~s~~~~~~~~~P~L~~ 157 (167)
T 1uuy_A 135 INMPGNPNAVAECMEALLPALKH 157 (167)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHHH
Confidence 89999999998887777644443
No 24
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=29.39 E-value=49 Score=21.10 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCC--CCHHHHHHHHHHHHHHHhhccccccccc
Q psy4032 53 GCP--PTAEALMYGILQLQKKVKRMKILQSWYR 83 (84)
Q Consensus 53 GCP--P~p~~i~~~l~~l~~~i~~~~~~~~~~~ 83 (84)
++| -+++++...|.+.+..++.++++-.|.+
T Consensus 43 ~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlk 75 (113)
T 3fxt_A 43 DALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLH 75 (113)
T ss_dssp TTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEE
Confidence 454 4899999999999999999999999975
No 25
>3p12_A D-ribose pyranase; carbohydrate metabolism, ISOM; 2.35A {Staphylococcus aureus} SCOP: c.133.1.0 PDB: 3p13_A*
Probab=29.34 E-value=32 Score=22.78 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.7
Q ss_pred HHHHHhcC--CCEEEEeccCCCCCCCC
Q psy4032 6 LLAQAMLG--PVGVISMGGAAPNGGGY 30 (84)
Q Consensus 6 ~~~e~~~~--~k~vIA~G~CAv~~GGi 30 (84)
..|++..+ ++.||+-|-|+ -||-+
T Consensus 103 ~Fy~~~k~~~a~aVVrTGE~~-pYaNi 128 (144)
T 3p12_A 103 EMKSNLAHPLNKGNIRTGETT-PYSNI 128 (144)
T ss_dssp HHHHGGGCTTEEEEEECCCCS-TTCCE
T ss_pred HHHHHhccCCeEEEEEcCCCC-ceeEE
Confidence 46888878 99999999999 66653
No 26
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=28.29 E-value=38 Score=23.00 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q psy4032 4 VSLLAQAMLGPVGVISMGGAA 24 (84)
Q Consensus 4 l~~~~e~~~~~k~vIA~G~CA 24 (84)
|++..+.+ +|++||++|.=|
T Consensus 121 L~~ei~~~-~P~vIv~lG~~A 140 (204)
T 1vk2_A 121 LLAQIEII-NPDVIVALGATA 140 (204)
T ss_dssp HHHHHHHH-CCSEEEEESHHH
T ss_pred HHHHHHhC-CccEEEeecHHH
Confidence 56667777 899999999876
No 27
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=26.33 E-value=20 Score=17.62 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=6.9
Q ss_pred ceeccCCCCC
Q psy4032 48 DIYVPGCPPT 57 (84)
Q Consensus 48 D~~IPGCPP~ 57 (84)
.+.=||||.-
T Consensus 11 tfrgpgcptl 20 (29)
T 1ic9_A 11 TFRGPGCPTL 20 (29)
T ss_dssp EEECSCCCCC
T ss_pred eecCCCCCcc
Confidence 3566999963
No 28
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=25.94 E-value=26 Score=19.55 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHHHH
Q psy4032 54 CPPTAEALMYGILQL 68 (84)
Q Consensus 54 CPP~p~~i~~~l~~l 68 (84)
-||+-|+|+.+|+.+
T Consensus 37 SPP~ReEI~atLlD~ 51 (52)
T 3abd_X 37 SPPSREEIMATLLDH 51 (52)
T ss_dssp CCCCHHHHHHHC---
T ss_pred CCccHHHHHHHHhcc
Confidence 599999999988753
No 29
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=24.74 E-value=29 Score=22.51 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=16.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhh----ccccccccc
Q psy4032 51 VPGCPPTAEALMYGILQLQKKVKR----MKILQSWYR 83 (84)
Q Consensus 51 IPGCPP~p~~i~~~l~~l~~~i~~----~~~~~~~~~ 83 (84)
..| +.+++.+.+.|..+++.+.. .+.+..||.
T Consensus 161 ~~g-~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 196 (200)
T 2b7k_A 161 LGR-NYDEKTGVDKIVEHVKSYVPAEQRAKQKEAWYS 196 (200)
T ss_dssp ECT-TCCTTHHHHHHHHHHHHCCCC------------
T ss_pred eCC-CCCHHHHHHHHHHHHHHhhhhhhcchhHHHHHH
Confidence 444 35677888888888887653 567889985
No 30
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=20.95 E-value=62 Score=21.97 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q psy4032 4 VSLLAQAMLGPVGVISMGGAA 24 (84)
Q Consensus 4 l~~~~e~~~~~k~vIA~G~CA 24 (84)
|++..+.+ +|++||++|.=|
T Consensus 105 L~~ei~~l-~P~vIv~lG~~A 124 (205)
T 1ui0_A 105 LLKQIELI-APQIIVPLGAVA 124 (205)
T ss_dssp HHHHHHHH-CCSEEEEBSHHH
T ss_pred HHHHHHhC-CccEEEeehHHH
Confidence 56667777 699999999876
Done!