RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4032
         (84 letters)



>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6,
           Nqo6 {Thermus thermophilus [TaxId: 274]}
          Length = 161

 Score = 85.4 bits (211), Expect = 2e-23
 Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 9   QAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQL 68
           + M  P  VISMG A  + GG ++ +Y++V+  D ++PVD+YVPGCPP  EAL+Y ++QL
Sbjct: 83  EQMPDPKWVISMG-ACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQL 140

Query: 69  QKKVKRMKILQSWYR 83
           QKKV+     +   R
Sbjct: 141 QKKVRGQAYNERGER 155


>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 267

 Score = 50.7 bits (121), Expect = 9e-10
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY-SYSVVRGCDRIIP----VDIYVPGCPPT 57
            + + ++ +     VI+ G  A  GG      + +  +G +  +       I + GCPP 
Sbjct: 94  MLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPN 153

Query: 58  AEALMYGILQLQKKVK 73
              L+  I+   K   
Sbjct: 154 PYNLVGTIVYYLKNKA 169


>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio gigas [TaxId: 879]}
          Length = 261

 Score = 47.6 bits (113), Expect = 9e-09
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIP----VDIYVPGCPPT 57
              + A+       VI++G  A  GG      + +   G +  +       I + GCPP 
Sbjct: 89  MYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPN 148

Query: 58  AEALMYGILQL 68
               +  ++ L
Sbjct: 149 PMNFVGTVVHL 159


>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 45.7 bits (108), Expect = 5e-08
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 4   VSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIPVD-IYVPGCPPTAEAL 61
           +    +A     G+I +G  +P GG      + S  +G    + V  I +PGCPP     
Sbjct: 92  IETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINF 151

Query: 62  MYGILQLQKKVKRMKILQSWYR 83
           +  ++ +    K +  L    R
Sbjct: 152 VGAVVHV--LTKGIPDLDENGR 171


>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfomicrobium baculatum [TaxId: 899]}
          Length = 278

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY-------SYSVVRGCDRIIPVDIYVPGCP 55
            + L+       +  +++G  +  GG            S       ++I  + + VPGCP
Sbjct: 101 MMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCP 160

Query: 56  PTAEALMYGILQLQKKVKR 74
           P  + ++  ++     V  
Sbjct: 161 PHPDWMVGTLVAAWSHVLN 179


>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia
           coli [TaxId: 562]}
          Length = 148

 Score = 23.4 bits (50), Expect = 3.7
 Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 26  NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW 81
           N   +     +++R        +I V     TA+ ++            +   Q +
Sbjct: 94  NAVPHDPDVKALLRLATV---WNIPVATNVATADFIIQSPHFNDAVDILIPDYQRY 146


>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064
          {Psychrobacter arcticus [TaxId: 334543]}
          Length = 113

 Score = 23.4 bits (50), Expect = 3.9
 Identities = 5/8 (62%), Positives = 5/8 (62%)

Query: 55 PPTAEALM 62
            TAE LM
Sbjct: 4  ADTAEHLM 11


>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
          {Bacillus subtilis [TaxId: 1423]}
          Length = 249

 Score = 22.9 bits (48), Expect = 7.1
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 17 VISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGI 65
          +I    +AP+       +   V+  +R   +     G P   +A ++ +
Sbjct: 30 IIEAVQSAPSSINGQQVTVITVQDKERKKKISELAGGQPWIDQAPVFLL 78


>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
          {Escherichia coli, major form, NfsA [TaxId: 562]}
          Length = 240

 Score = 22.8 bits (48), Expect = 7.7
 Identities = 6/51 (11%), Positives = 14/51 (27%)

Query: 17 VISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQ 67
          +I+   A  +       S   +        +     G    A+A  + +  
Sbjct: 30 IINSARATSSSSFLQCSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFC 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,732
Number of extensions: 14299
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)