BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4034
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 62/215 (28%)
Query: 46 VVIFFADGVRSEKF---------YEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETR 96
++IF DG R+ E +H+PY+R + PT+T
Sbjct: 165 LIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVY--------------PTKTF 210
Query: 97 PGAIAMLAGFYEDPSAIFKGWQDNPVEFD---HIFNQSEFSVAF--GSP---DVLKMFTR 148
P + G Y + I +PV FD H+ + +F+ + G P K R
Sbjct: 211 PNLYTLATGLYPESHGIVGNSMYDPV-FDASFHLRGREKFNHRWWGGQPLWITATKQGVR 269
Query: 149 -------------DKVIFLLHFLG----------------PDTAGHNFKPHSKEYGDNIE 179
+++ +L +L PD +GH + P E + +
Sbjct: 270 AGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLR 329
Query: 180 AVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214
+D V ++ L H I+ DHGM D
Sbjct: 330 EIDKTVGQLMDGLKQLRLH-RCVNVIFVGDHGMED 363
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 31.6 bits (70), Expect = 0.40, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212
+ L+ PD++GH+ P S E ++ VD +V ++ L D I SDHGM
Sbjct: 268 YTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMDGLKD-LGLDKCLNLILISDHGM 326
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 31.6 bits (70), Expect = 0.40, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212
+ L+ PD++GH+ P S E ++ VD +V ++ L D I SDHGM
Sbjct: 264 YTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMDGLKD-LGLDKCLNLILISDHGM 322
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 62/215 (28%)
Query: 46 VVIFFADGVRSEKF---------YEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETR 96
++IF DG R+ E +H+PY+R + PT+T
Sbjct: 130 LIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVY--------------PTKTF 175
Query: 97 PGAIAMLAGFYEDPSAIFKGWQDNPVEFD---HIFNQSEFSVAF--GSP---DVLKMFTR 148
P + G Y + I +PV FD H+ + +F+ + G P K R
Sbjct: 176 PNLYTLATGLYPESHGIVGNSMYDPV-FDASFHLRGREKFNHRWWGGQPLWITATKQGVR 234
Query: 149 -------------DKVIFLLHFLG----------------PDTAGHNFKPHSKEYGDNIE 179
+++ +L +L PD +GH + P E + +
Sbjct: 235 AGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLR 294
Query: 180 AVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214
+D V ++ L H I+ DHGM D
Sbjct: 295 EIDKTVGQLMDGLKQLRLH-RCVNVIFVGDHGMED 328
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 72/215 (33%), Gaps = 62/215 (28%)
Query: 46 VVIFFADGVRSEKF---------YEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETR 96
++IF DG R+ E +H+PY+R + PT+T
Sbjct: 130 LIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVY--------------PTKTF 175
Query: 97 PGAIAMLAGFYEDPSAIFKGWQDNPVEFD---HIFNQSEFSVAF--GSP---DVLKMFTR 148
P + G Y + I +PV FD H+ + +F+ + G P K R
Sbjct: 176 PNLYTLATGLYPESHGIVGNSMYDPV-FDATFHLRGREKFNHRWWGGQPLWITATKQGVR 234
Query: 149 DKVIF-------------LLHFLG----------------PDTAGHNFKPHSKEYGDNIE 179
F +L +L PD +GH + P E + +
Sbjct: 235 AGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLR 294
Query: 180 AVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214
+D V ++ L H I+ DHGM D
Sbjct: 295 EIDKTVGQLMDGLKQLKLH-RCVNVIFVGDHGMED 328
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211
+ L+ PD++GH+ P S E ++ VD +V + L D I SDHG
Sbjct: 268 YTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGXLXDGLKD-LGLDKCLNLILISDHG 325
>pdb|1BUE|A Chain A, Nmc-A Carbapenemase From Enterobacter Cloacae
pdb|1BUL|A Chain A, 6alpha-(Hydroxypropyl)penicillanate Acylated On Nmc-A
Beta- Lactamase From Enterobacter Cloacae
Length = 265
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 111 SAIFKGWQDNPVEFDHIFNQSEFSVAFGSPDVLK 144
+A+ KG QDN + + I N + S+ F SP K
Sbjct: 52 AAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTK 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,368,615
Number of Sequences: 62578
Number of extensions: 253302
Number of successful extensions: 570
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)