Query psy4034
Match_columns 221
No_of_seqs 156 out of 1274
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:41:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2124|consensus 100.0 1.1E-32 2.3E-37 251.8 12.3 211 4-220 4-267 (883)
2 KOG2645|consensus 99.9 2.7E-27 5.7E-32 206.6 12.7 164 43-215 22-239 (418)
3 COG1524 Uncharacterized protei 99.9 2.4E-26 5.3E-31 205.9 13.5 203 10-220 6-287 (450)
4 KOG2125|consensus 99.9 8.5E-27 1.8E-31 209.0 10.0 214 3-221 5-262 (760)
5 PF01663 Phosphodiest: Type I 99.9 5.5E-27 1.2E-31 203.2 6.4 163 46-215 1-248 (365)
6 TIGR02335 hydr_PhnA phosphonoa 99.9 1.7E-25 3.8E-30 197.3 12.0 163 39-216 8-244 (408)
7 KOG2126|consensus 99.9 1.6E-23 3.5E-28 192.2 9.9 169 40-220 55-271 (895)
8 TIGR03417 chol_sulfatase choli 99.8 4.4E-20 9.5E-25 167.5 13.5 70 43-116 2-73 (500)
9 PRK13759 arylsulfatase; Provis 99.8 7.6E-19 1.6E-23 158.9 13.3 72 41-116 4-76 (485)
10 KOG3867|consensus 99.8 8.8E-18 1.9E-22 150.1 14.8 74 40-116 26-99 (528)
11 COG3119 AslA Arylsulfatase A a 99.7 9.1E-17 2E-21 145.0 12.6 72 43-117 4-76 (475)
12 PF00884 Sulfatase: Sulfatase; 99.7 4.1E-16 9E-21 131.6 11.5 167 44-214 1-252 (308)
13 COG3379 Uncharacterized conser 99.6 5.8E-16 1.3E-20 132.4 9.7 161 43-214 3-266 (471)
14 COG3083 Predicted hydrolase of 99.6 1.5E-15 3.3E-20 133.1 11.7 164 40-213 256-463 (600)
15 PF08665 PglZ: PglZ domain; I 99.5 4.6E-13 9.9E-18 106.2 9.9 151 44-213 1-175 (181)
16 PRK09598 lipid A phosphoethano 99.3 4.5E-11 9.7E-16 108.8 14.2 171 42-219 222-447 (522)
17 KOG3731|consensus 99.3 7.3E-11 1.6E-15 102.5 14.7 67 43-116 34-100 (541)
18 TIGR02687 conserved hypothetic 99.3 3.4E-11 7.3E-16 114.7 11.1 152 44-214 457-630 (844)
19 PRK10649 hypothetical protein; 99.2 3E-10 6.4E-15 104.8 13.8 167 42-213 235-465 (577)
20 PRK03776 phosphoglycerol trans 99.2 7.4E-10 1.6E-14 103.4 14.2 170 39-213 157-398 (762)
21 PRK12363 phosphoglycerol trans 99.1 3.4E-09 7.4E-14 98.7 15.9 42 171-213 354-395 (703)
22 PRK11598 putative metal depend 99.1 1.5E-09 3.3E-14 99.2 11.6 168 43-219 233-463 (545)
23 cd00016 alkPPc Alkaline phosph 99.0 5.1E-09 1.1E-13 92.1 11.0 57 151-213 251-307 (384)
24 PRK11560 phosphoethanolamine t 98.8 1.3E-07 2.8E-12 86.8 14.4 159 44-213 248-468 (558)
25 PF01676 Metalloenzyme: Metall 98.8 7.6E-09 1.6E-13 86.2 5.0 64 148-218 139-202 (252)
26 PRK05434 phosphoglyceromutase; 98.7 3.6E-08 7.9E-13 89.2 7.4 60 148-214 386-445 (507)
27 TIGR01696 deoB phosphopentomut 98.7 5.3E-08 1.1E-12 84.9 8.0 57 150-214 270-327 (381)
28 PRK12383 putative mutase; Prov 98.7 5.9E-08 1.3E-12 85.4 7.7 60 150-217 287-346 (406)
29 PF02995 DUF229: Protein of un 98.6 9.2E-07 2E-11 80.5 13.8 156 40-213 123-345 (497)
30 PRK05362 phosphopentomutase; P 98.5 2.3E-07 5.1E-12 81.5 7.8 57 149-213 277-334 (394)
31 TIGR01307 pgm_bpd_ind 2,3-bisp 98.5 2.2E-07 4.7E-12 83.8 6.9 58 149-213 381-438 (501)
32 PLN02538 2,3-bisphosphoglycera 98.5 3.9E-07 8.5E-12 82.6 7.6 57 149-212 420-476 (558)
33 PRK04024 cofactor-independent 98.2 2.3E-06 5E-11 76.0 6.6 65 149-220 293-358 (412)
34 COG2194 Predicted membrane-ass 98.1 7E-05 1.5E-09 68.8 13.2 169 44-220 232-468 (555)
35 TIGR00306 apgM 2,3-bisphosphog 98.0 1.5E-05 3.2E-10 70.6 7.5 65 149-220 287-352 (396)
36 TIGR02535 hyp_Hser_kinase prop 97.8 6.3E-05 1.4E-09 66.6 6.9 65 149-218 284-350 (396)
37 PRK04200 cofactor-independent 97.7 9E-05 1.9E-09 65.6 6.4 58 149-212 283-341 (395)
38 COG0696 GpmI Phosphoglyceromut 97.6 0.00014 3.1E-09 64.6 6.8 59 149-214 388-446 (509)
39 COG1015 DeoB Phosphopentomutas 97.6 0.00019 4.1E-09 61.9 6.9 58 150-215 281-339 (397)
40 PRK04135 cofactor-independent 97.5 0.0002 4.3E-09 63.1 5.9 60 149-218 279-339 (395)
41 COG3635 Predicted phosphoglyce 97.4 0.0005 1.1E-08 59.6 6.9 64 149-220 296-360 (408)
42 KOG4513|consensus 97.3 0.00073 1.6E-08 58.4 6.5 59 149-214 404-462 (531)
43 PRK10518 alkaline phosphatase; 97.0 0.0025 5.5E-08 57.5 7.1 58 151-214 344-401 (476)
44 smart00098 alkPPc Alkaline pho 96.8 0.0039 8.5E-08 55.6 7.1 58 150-213 253-310 (419)
45 TIGR03397 acid_phos_Burk acid 96.4 0.0037 8.1E-08 56.4 4.0 35 177-212 364-399 (483)
46 PF00245 Alk_phosphatase: Alka 96.3 0.0037 7.9E-08 55.9 3.8 58 150-213 256-313 (421)
47 COG1368 MdoB Phosphoglycerol t 96.1 0.0071 1.5E-07 57.1 4.4 42 172-214 454-495 (650)
48 COG1785 PhoA Alkaline phosphat 95.7 0.031 6.7E-07 50.4 6.7 57 151-213 300-356 (482)
49 PF07394 DUF1501: Protein of u 94.5 0.18 3.9E-06 44.6 7.9 62 149-215 245-306 (392)
50 PF04185 Phosphoesterase: Phos 94.1 0.19 4.2E-06 44.3 7.3 134 67-211 120-308 (376)
51 KOG4126|consensus 93.7 0.17 3.7E-06 45.7 6.1 56 151-213 345-400 (529)
52 PRK04135 cofactor-independent 93.7 0.11 2.4E-06 46.0 4.8 60 41-103 5-70 (395)
53 COG3635 Predicted phosphoglyce 92.8 0.11 2.4E-06 45.4 3.3 59 43-103 3-67 (408)
54 TIGR02535 hyp_Hser_kinase prop 92.6 0.17 3.6E-06 45.0 4.4 57 45-103 2-64 (396)
55 PRK04200 cofactor-independent 92.3 0.17 3.8E-06 44.9 4.1 57 45-103 2-64 (395)
56 PRK04024 cofactor-independent 91.8 0.23 5E-06 44.4 4.2 57 45-103 4-66 (412)
57 TIGR00306 apgM 2,3-bisphosphog 88.3 0.65 1.4E-05 41.4 4.1 55 47-103 1-61 (396)
58 PF05827 ATP-synt_S1: Vacuolar 86.5 7.7 0.00017 32.6 9.6 51 149-210 127-177 (282)
59 PF01676 Metalloenzyme: Metall 76.5 1.4 3E-05 36.6 1.4 35 44-78 1-35 (252)
60 PF11658 DUF3260: Protein of u 75.4 51 0.0011 30.4 10.9 157 46-213 198-410 (518)
61 COG0696 GpmI Phosphoglyceromut 74.9 3.1 6.7E-05 37.7 3.2 65 42-106 2-73 (509)
62 PLN02538 2,3-bisphosphoglycera 74.4 3 6.6E-05 38.6 3.1 37 42-78 19-55 (558)
63 COG4102 Uncharacterized protei 73.8 13 0.00029 32.4 6.6 62 149-214 267-328 (418)
64 PRK05434 phosphoglyceromutase; 70.6 6.5 0.00014 36.2 4.3 36 43-78 4-39 (507)
65 TIGR01307 pgm_bpd_ind 2,3-bisp 70.4 5.7 0.00012 36.5 3.9 35 44-78 1-35 (501)
66 PF05991 NYN_YacP: YacP-like N 67.5 6.1 0.00013 30.7 3.1 31 179-213 77-107 (166)
67 COG3885 Uncharacterized conser 64.1 21 0.00046 29.4 5.5 38 176-219 144-183 (261)
68 TIGR03368 cellulose_yhjU cellu 61.4 20 0.00043 32.8 5.4 40 171-213 368-407 (518)
69 PRK13366 protocatechuate 4,5-d 56.8 20 0.00044 30.4 4.5 35 176-213 28-62 (284)
70 PF15183 MRAP: Melanocortin-2 55.0 34 0.00073 23.4 4.4 20 3-22 41-60 (90)
71 PRK13364 protocatechuate 4,5-d 54.7 19 0.0004 30.6 4.0 33 178-213 30-62 (278)
72 smart00098 alkPPc Alkaline pho 51.2 9.6 0.00021 34.2 1.8 65 44-110 1-74 (419)
73 cd07950 Gallate_Doxase_N The N 49.7 26 0.00056 29.6 4.1 33 178-213 30-62 (277)
74 cd07369 PydA_Rs_like PydA is a 47.5 34 0.00074 29.7 4.5 34 176-212 26-59 (329)
75 cd07364 PCA_45_Dioxygenase_B S 46.5 34 0.00073 28.9 4.3 35 176-213 28-62 (277)
76 PF00231 ATP-synt: ATP synthas 45.1 27 0.00058 29.5 3.5 16 198-213 73-88 (290)
77 cd07949 PCA_45_Doxase_B_like_1 44.6 29 0.00063 29.3 3.6 33 178-213 30-62 (276)
78 PRK13365 protocatechuate 4,5-d 43.4 32 0.0007 29.1 3.7 33 178-213 30-62 (279)
79 cd07367 CarBb CarBb is the B s 43.0 44 0.00095 28.0 4.4 35 176-213 22-56 (268)
80 cd07368 PhnC_Bs_like PhnC is a 42.2 39 0.00084 28.5 4.0 36 176-214 26-61 (277)
81 cd07366 3MGA_Dioxygenase Subun 42.0 31 0.00068 30.0 3.5 33 177-212 67-99 (328)
82 PF00245 Alk_phosphatase: Alka 39.4 10 0.00023 34.0 0.2 65 43-109 1-73 (421)
83 PRK05465 ethanolamine ammonia- 37.8 33 0.00071 28.7 2.8 52 21-78 83-138 (260)
84 TIGR02049 gshA_ferroox glutama 37.5 1.2E+02 0.0027 26.9 6.3 67 143-213 203-269 (403)
85 PRK10518 alkaline phosphatase; 36.9 25 0.00055 32.1 2.2 68 40-109 66-143 (476)
86 PRK05621 F0F1 ATP synthase sub 33.6 64 0.0014 27.2 4.0 11 203-213 77-87 (284)
87 COG4607 CeuA ABC-type enteroch 33.3 1.2E+02 0.0026 26.2 5.5 48 164-215 163-210 (320)
88 TIGR01146 ATPsyn_F1gamma ATP s 32.6 70 0.0015 27.0 4.1 11 203-213 78-88 (287)
89 COG4077 Uncharacterized protei 32.1 89 0.0019 23.4 4.0 32 168-200 69-100 (156)
90 PF12249 AftA_C: Arabinofurano 32.0 1.3E+02 0.0027 23.7 5.0 48 157-214 14-64 (178)
91 PRK02624 psbH photosystem II r 31.5 85 0.0018 20.2 3.3 29 4-32 31-59 (64)
92 PRK13373 putative dioxygenase; 31.2 87 0.0019 27.4 4.4 35 176-213 26-60 (344)
93 PRK13370 mhpB 3-(2,3-dihydroxy 28.7 1.1E+02 0.0024 26.3 4.7 35 176-213 22-56 (313)
94 PLN00055 photosystem II reacti 28.6 93 0.002 20.7 3.2 29 4-32 43-71 (73)
95 COG1785 PhoA Alkaline phosphat 28.5 77 0.0017 29.1 3.8 70 39-110 55-131 (482)
96 PF05985 EutC: Ethanolamine am 28.2 43 0.00094 27.7 2.0 31 42-78 101-131 (237)
97 CHL00066 psbH photosystem II p 28.0 99 0.0022 20.5 3.3 29 4-32 43-71 (73)
98 TIGR03323 alt_F1F0_F1_gam alte 27.9 1E+02 0.0022 26.1 4.3 11 203-213 74-84 (285)
99 PF03205 MobB: Molybdopterin g 27.4 1.5E+02 0.0032 22.1 4.8 32 184-218 16-47 (140)
100 PRK13363 protocatechuate 4,5-d 26.9 89 0.0019 27.3 3.8 32 177-211 69-100 (335)
101 cd07359 PCA_45_Doxase_B_like S 26.3 3E+02 0.0066 22.8 6.9 34 177-213 25-58 (271)
102 PF05762 VWA_CoxE: VWA domain 24.8 1E+02 0.0022 24.9 3.6 25 183-209 134-158 (222)
103 cd01827 sialate_O-acetylestera 24.6 2.3E+02 0.005 21.4 5.6 43 146-196 64-106 (188)
104 PF09949 DUF2183: Uncharacteri 24.5 83 0.0018 22.2 2.7 23 185-214 55-77 (100)
105 PF07765 KIP1: KIP1-like prote 23.9 1.9E+02 0.0042 19.3 4.1 32 165-196 7-38 (74)
106 TIGR00847 ccoS cytochrome oxid 23.8 1.2E+02 0.0026 18.7 3.0 23 1-23 1-23 (51)
107 cd01825 SGNH_hydrolase_peri1 S 23.5 3.2E+02 0.0069 20.5 6.2 49 148-208 55-103 (189)
108 TIGR03848 MSMEG_4193 probable 22.7 2.1E+02 0.0046 22.3 5.1 38 169-207 114-151 (204)
109 KOG4513|consensus 22.6 1.1E+02 0.0025 27.2 3.6 40 39-78 14-54 (531)
110 PRK13423 F0F1 ATP synthase sub 22.5 1.2E+02 0.0026 25.7 3.7 11 203-213 78-88 (288)
111 PF13179 DUF4006: Family of un 22.5 1E+02 0.0022 20.1 2.5 15 5-19 13-27 (66)
112 PF02739 5_3_exonuc_N: 5'-3' e 22.5 1.4E+02 0.003 23.1 3.8 31 180-214 109-139 (169)
113 PRK13427 F0F1 ATP synthase sub 21.5 1.5E+02 0.0032 25.1 4.2 11 203-213 79-89 (289)
114 PRK13422 F0F1 ATP synthase sub 21.4 1.1E+02 0.0024 26.1 3.3 11 203-213 78-88 (298)
115 PRK13425 F0F1 ATP synthase sub 20.8 2E+02 0.0043 24.4 4.8 11 203-213 79-89 (291)
116 PF11511 RhodobacterPufX: Intr 20.8 1.8E+02 0.0039 19.0 3.4 20 3-22 33-52 (67)
117 COG3688 Predicted RNA-binding 20.8 1.6E+02 0.0035 22.9 3.7 32 178-212 80-111 (173)
118 PRK13424 F0F1 ATP synthase sub 20.7 1.4E+02 0.0031 25.2 3.9 11 203-213 79-89 (291)
119 cd07365 MhpB_like Subunit B of 20.5 2E+02 0.0044 24.7 4.8 34 177-213 23-56 (310)
120 cd01829 SGNH_hydrolase_peri2 S 20.1 4E+02 0.0087 20.3 6.9 53 149-209 59-116 (200)
No 1
>KOG2124|consensus
Probab=100.00 E-value=1.1e-32 Score=251.76 Aligned_cols=211 Identities=45% Similarity=0.901 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccccc-CCCCcEEEEEEcCCCchhhcccccCCC-CCChHHHHHHhhCC
Q psy4034 4 FIVLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKAQGI-QLAKRVVIFFADGVRSEKFYEVTDRNS-SHSPYIRTLLANNE 81 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvlI~vDgl~~d~l~~~~~~~~-~~~P~l~~l~~~~~ 81 (221)
..+++++|++++-||+++||++|.+.+.. ||++... |+++|+++++.||+|+|.+.+.. . ...|+|+.+.. ++
T Consensus 4 ~~~~llvH~~~l~sIf~Iyf~splv~gm~-p~~t~~~~ppA~RLvl~v~DGLRAd~~~~~~---~~s~ap~LR~ii~-~q 78 (883)
T KOG2124|consen 4 WKLGLLVHLLLLGSIFDIYFQSPLVHGMT-PQKTLLEPPPAKRLVLFVGDGLRADTLFEPN---CESRAPFLRSIIL-NQ 78 (883)
T ss_pred hHHHHHHHHHHHHHHheeeeecCCCCCCc-ccccCCCCChHHhEEEEcccccchhhhcCcc---ccccCCcHHHHHH-hc
Confidence 45569999999999999999999999999 9998755 58999999999999999997743 3 48999999998 58
Q ss_pred cceeeeeecCCcccccchhhhcccCCCCccccccCCCCCCCcccchhhccceeEeecchhhhhhcCC-------------
Q psy4034 82 ACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPVEFDHIFNQSEFSVAFGSPDVLKMFTR------------- 148 (221)
Q Consensus 82 g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~p~~~d~i~~~~~~~~~~~~~~~~~~~~~------------- 148 (221)
|.++..++..||.|+|++.+++-|.|++...+.++|..||..+|++|++.+.++.||++++.+.|.+
T Consensus 79 g~~GiS~tr~PTeSRpghvAliaGfyedpSAvtkgwk~NPv~FDsvFN~S~~t~~~gs~dil~~fs~~~~~v~~~~y~~~ 158 (883)
T KOG2124|consen 79 GTVGISHTRVPTESRPGHVALIAGFYEDPSAVTKGWKSNPVNFDSVFNRSRHTYSFGSPDILPMFSEDLSHVDTPMYDHE 158 (883)
T ss_pred CcccccccCCCCCCCCCcEEEEeccccChHHhhhhhhcCCchhhhhhhhhhhhhcccCcccchhhhcCCCccCccccchh
Confidence 9999999999999999999999999999999999999999999999999999999887766555431
Q ss_pred --------------------------------------CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy4034 149 --------------------------------------DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVH 190 (221)
Q Consensus 149 --------------------------------------~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~ 190 (221)
++-++++|+.+.|..||.+.|++.+|+++++++|+.|.++.+
T Consensus 159 ~~~~~~d~~~lD~WvFd~~~~l~~~~~~~~~L~~~~~~~kvVfflhLlg~dt~gH~~~P~s~~y~~nl~~~d~~i~~~y~ 238 (883)
T KOG2124|consen 159 LEDFDSDAIELDEWVFDRVDDLLHNSTNDQELRDLLHQDKIVFFLHLLGIDTAGHAHRPYSVEYRENLKYTDKGIRELYD 238 (883)
T ss_pred HhhccccccccchhhhhhHHHHHhhhhcchhHHHhhccCceEEEEeecCcCccccccCCCcHHHHHHhhcCCccHHHHHH
Confidence 456889999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcEEEEEEcCCCCCCCCCCCC
Q psy4034 191 TLSSYYNHDNKTAFIYSSDHGMTDWGKNSM 220 (221)
Q Consensus 191 ~l~~~g~~~~~t~viitSDHG~~~~g~HGg 220 (221)
.+++.- .+++|..++|+||||++.|+||+
T Consensus 239 l~e~~f-nD~kTayi~TaDhgms~~gsHg~ 267 (883)
T KOG2124|consen 239 LFENYF-NDGKTAYIFTADHGMSDFGSHGD 267 (883)
T ss_pred HHHHHh-cCCcceEEEehhcccccccccCC
Confidence 999998 69999999999999999999997
No 2
>KOG2645|consensus
Probab=99.95 E-value=2.7e-27 Score=206.57 Aligned_cols=164 Identities=23% Similarity=0.358 Sum_probs=135.5
Q ss_pred CCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccCCCCCC
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNP 121 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~p 121 (221)
.+++++|.+||+|++++.+ ..+|+|+.|++ .|+..+ ...++||.|.|++.||+||.||..|||++|..++|
T Consensus 22 ~p~lllis~DGFr~~yl~~------~~~p~i~~l~~--~gv~~~~~~pvFpT~TfPNhySivTGlype~HGIv~N~~~Dp 93 (418)
T KOG2645|consen 22 HPKLLLISFDGFRADYLYK------VLTPNIHKLAS--CGVWVTYVIPVFPTKTFPNHYSIVTGLYPESHGIVGNYFFDP 93 (418)
T ss_pred CCCEEEEEecccchhhccC------ccCccHHHHHh--ccccccEEEecCcccccCCcceeeecccchhceeeceeeecc
Confidence 3489999999999999987 67999999999 899987 99999999999999999999999999999876655
Q ss_pred Cc----------------------ccchhhcc--ceeEeecch--------------------------hhhh--h-cCC
Q psy4034 122 VE----------------------FDHIFNQS--EFSVAFGSP--------------------------DVLK--M-FTR 148 (221)
Q Consensus 122 ~~----------------------~d~i~~~~--~~~~~~~~~--------------------------~~~~--~-~~~ 148 (221)
.. |.+..++. .++++|+.. .+.+ + -.+
T Consensus 94 ~~~~~F~~~~~~~~~~~ww~~ePiW~t~~~~~~kaa~~~wpg~~v~~~~~~~~~~~~~n~~~~~~~~~~~i~~~~~~~~e 173 (418)
T KOG2645|consen 94 KTNKEFDLFTNSDLEPFWWNGEPIWVTARKQGRKVATFFWPGCEVEIHGYIPDPYDIYNQSVPLEERADTVLDLDLPEKE 173 (418)
T ss_pred ccccccccCCCccccccccCCCcchhhhhhcCCceeEEecCCcccccccccccccccccccccHHHHHHHHhcccccccc
Confidence 22 11111111 124455310 0011 1 123
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDW 215 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~ 215 (221)
.++++.+|+.++|..||++|+.+++..++++++|..|++|++.|++++ +.+.++|||+|||||.+.
T Consensus 174 ~p~l~~~Y~~~pD~~gh~~Gp~~~~v~~~l~~vD~~i~~L~~~Lk~r~-L~~~vNvIi~SDHGM~~~ 239 (418)
T KOG2645|consen 174 RPDLLLLYVEEPDHSGHRYGPDSPEVEKALKEVDDFIGYLIKGLKDRN-LFEDVNVIIVSDHGMTDI 239 (418)
T ss_pred CCCceEEeccCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHcc-ccccceEEEeecCCcccc
Confidence 789999999999999999999999999999999999999999999999 999999999999999876
No 3
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=205.89 Aligned_cols=203 Identities=23% Similarity=0.401 Sum_probs=156.8
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCccccccccCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcc-eeeee
Q psy4034 10 IHVLFFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEAC-GGIAH 88 (221)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~-~~~~~ 88 (221)
..+....+++.+++..+....-. +..+...++.+|+|+|++||+|+|.+... ...+|++++|+. +|. ...+.
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~klvli~iDgl~~d~~~~~----~~~~p~l~~l~~--~g~~~~~~~ 78 (450)
T COG1524 6 LLVVFLFSILDLFFAADVPILSQ-SYQAATPAPKKKLVLISIDGLRADVLDRK----AGILPFLSSLAE--NGVHVAELI 78 (450)
T ss_pred hhHHHHHHHHhhccccCcccccC-cccccCCcchheEEEEEEeccChhhhhhh----ccCchhHHHHHh--CCceeEEEe
Confidence 56677777788888776654443 33455667789999999999999999774 278999999999 888 45699
Q ss_pred ecCCcccccchhhhcccCCCCccccccCCCCCCCcccch----------hhc----c-----c-----------e--e-E
Q psy4034 89 TQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPVEFDHI----------FNQ----S-----E-----------F--S-V 135 (221)
Q Consensus 89 s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~p~~~d~i----------~~~----~-----~-----------~--~-~ 135 (221)
+.+||+|.|+++||.||.+|..||+++|+.++|...+.+ ... . . . . .
T Consensus 79 s~~Pt~T~p~~~tl~TG~~P~~hgi~~N~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T COG1524 79 SVFPTTTRPRHTTLITGSYPDEHGIVGNILYDPETGDSVLQFLLDNPTILFPGDDEAGMDVAAPFESLTVSDKLRVAVDL 158 (450)
T ss_pred cCCCccccccceeeecccCcchhccccccccCCcccchHHHHHhcCCceecCcccccccccCccceeeecCCcccccccc
Confidence 999999999999999999999999999987665322210 000 0 0 0 0 0
Q ss_pred ee----------cch---------------------hhh----h--------hcCC--CCeEEEEEecCCCccCCCCCCC
Q psy4034 136 AF----------GSP---------------------DVL----K--------MFTR--DKVIFLLHFLGPDTAGHNFKPH 170 (221)
Q Consensus 136 ~~----------~~~---------------------~~~----~--------~~~~--~~~~~~~~~~~~D~~~H~~g~~ 170 (221)
.| +.+ ... + ...+ ++++.++|+..+|+++|++|++
T Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~p~~~l~~~~~iD~~~H~~G~~ 238 (450)
T COG1524 159 VWDVPILHYLHIGGPDHITMRRFLIDEDDNIKPGYDYISEHFLDSLLFLDSVLLLDRADPDLLLVYLPNIDAIGHKYGPD 238 (450)
T ss_pred cCccccccceeecCCcccccChhhhhhHHHHHHHhccccccCCcceeeeccccCccccCcchhhhhccccchhhhccCCC
Confidence 01 000 000 0 0012 6789999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCCCCC
Q psy4034 171 SKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNSM 220 (221)
Q Consensus 171 s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~HGg 220 (221)
++++..+++++|..|+++++.+++.+ ..+++++||+|||||.+.+.|+.
T Consensus 239 s~~~~~~~~~~d~~l~~ll~~l~~~~-~~~~~~~ii~sDHG~~~~~~~~~ 287 (450)
T COG1524 239 SPEYAEAVREVDSLLGELLELLKKRG-LYEEYLVIITSDHGMSPLGVHGI 287 (450)
T ss_pred CHHHHhhhhhhhhhHHHHHHHHHhhc-cccceEEEEecccccchhhhhhh
Confidence 99999999999999999999999999 88999999999999998766653
No 4
>KOG2125|consensus
Probab=99.94 E-value=8.5e-27 Score=209.03 Aligned_cols=214 Identities=24% Similarity=0.337 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCC-CCCCc--ccc--ccccCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHH
Q psy4034 3 VFIVLFFIHVLFFLSIFEIYFKSPII-DNIPV--SVK--AQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLL 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~--~~~~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~ 77 (221)
+|+.++.+++.+...|+.+||..+.. .+... |.. ....+..+|+|++++|++|.|++..- +..||+-+.++
T Consensus 5 ~fti~~~lql~g~~Lfv~gFfp~k~~~tg~s~~~~~~d~~~~~~~~~~lvf~viDalr~dF~~~s----~~smp~t~s~~ 80 (760)
T KOG2125|consen 5 IFTIAILLQLCGLSLFVFGFFPVKITLTGKSGSEPYRDSEQPPPEKDRLVFVVIDALRADFLFSS----KESMPFTQSLL 80 (760)
T ss_pred eeeHHHHHHHHHHHHHHhhcccccccCCCcccCCCccccCCCCcccceEEEEEhhhhhhhccccC----CCCCccHHHHH
Confidence 57788999999999999999977543 22221 222 34566788899999999999999863 47899988777
Q ss_pred hhCCcceeeeeecCCcccccchhhhcccCCCCccccccCCCCCCC----cccchhhccceeEeecchhhhhhcC------
Q psy4034 78 ANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPV----EFDHIFNQSEFSVAFGSPDVLKMFT------ 147 (221)
Q Consensus 78 ~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~p~----~~d~i~~~~~~~~~~~~~~~~~~~~------ 147 (221)
.++++.-+.+.+..||+|.|...||.||..|.--.+.-|.-.... ....+++.+++..++|++.|.+.|+
T Consensus 81 ~~~~a~g~~a~A~~PTVTmPRLka~tTGtlp~FidvllNva~~~~~~d~wl~q~~~~n~kv~f~GDdTWLkLfPs~f~~f 160 (760)
T KOG2125|consen 81 ANGDAKGYHAFARPPTVTMPRLKAITTGTLPSFIDVLLNVATQELLDDNWLGQFFQINKKVHFNGDDTWLKLFPSEFLRF 160 (760)
T ss_pred hcCCceeeecccCCCcccchhhhhhhcCCCccHHHHHHhhhhHhhcccHHHHHHHHhCcEEEEccchHHHHHhhHHHHhc
Confidence 634555566888999999999999999999988666544321111 1223334455555667766665443
Q ss_pred -----------------------------CCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy4034 148 -----------------------------RDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNH 198 (221)
Q Consensus 148 -----------------------------~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~ 198 (221)
.+||...+|+.++|++||..|+.|+..-++++++|+.++++.+.+.+.. -
T Consensus 161 ~g~~SFfVsDyt~vDnNVTr~L~~l~~~~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~-s 239 (760)
T KOG2125|consen 161 EGVTSFFVSDYTDVDNNVTRHLPTLELNSSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHR-S 239 (760)
T ss_pred cCcceEEehhhhhhhhhhhhcCCchhhhhcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcC-C
Confidence 1589999999999999999999999999999999999999999998876 6
Q ss_pred CCcEEEEEEcCCCCCCCCCCCCC
Q psy4034 199 DNKTAFIYSSDHGMTDWGKNSMS 221 (221)
Q Consensus 199 ~~~t~viitSDHG~~~~g~HGg~ 221 (221)
.++|++|+++||||.+.|+|||+
T Consensus 240 ~d~tllil~gDHGM~e~GnHGGs 262 (760)
T KOG2125|consen 240 GDQTLLILCGDHGMTESGNHGGS 262 (760)
T ss_pred CCceEEEEEccccccccCCCCCC
Confidence 67999999999999999999996
No 5
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=99.93 E-value=5.5e-27 Score=203.20 Aligned_cols=163 Identities=25% Similarity=0.422 Sum_probs=119.5
Q ss_pred EEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccCCCCCCCc-
Q psy4034 46 VVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPVE- 123 (221)
Q Consensus 46 vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~p~~- 123 (221)
||+|++||++++.+.+.. ..+|||++|++ +|++.+ ..+++|+.|.|+|+||+||.+|.+|||++|..++|..
T Consensus 1 vv~i~iDGl~~~~l~~~~----~~~p~l~~l~~--~G~~~~~~~s~~Ps~T~~~~~si~TG~~P~~HGi~~~~~~~~~~~ 74 (365)
T PF01663_consen 1 VVVIGIDGLRPDLLDRYI----GNLPNLKRLAE--EGVYGPNLRSVFPSTTAPNWASILTGAYPEEHGIIGNYWYDPKTG 74 (365)
T ss_dssp EEEEEETT-BHHHHHHHH----TSSHHHHHHHH--HSEEECEEE-SSSBSHHHHHHHHHHSS-HHHHS--SSCEEETTTT
T ss_pred cEEEEEeCCCHHHHHhHh----ccCHHHHHHHH--CCCCCCCceecCCCCcccchhhhhcCccccccCCccccccCcccc
Confidence 799999999999998753 68999999999 899998 9999999999999999999999999999874332210
Q ss_pred --------------c--cchhh----ccce--eEee--------c------------------chhhh-----------h
Q psy4034 124 --------------F--DHIFN----QSEF--SVAF--------G------------------SPDVL-----------K 144 (221)
Q Consensus 124 --------------~--d~i~~----~~~~--~~~~--------~------------------~~~~~-----------~ 144 (221)
. ..++. +... ...| . .|... +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 154 (365)
T PF01663_consen 75 KESTFWDELGDSGDVDSPPIWESLAKAGKKVAVFGWPGTHPPYPGLNGILDPSFGTPDTYRYYSPKSLSDELYDGQGDNP 154 (365)
T ss_dssp EEECEESSSSGGGCCCCHEHHHHHHHTT-EEEECS-CTTSSHHHCCTCCCCTCTT-EESSTCCCCSCCHHHHHHHC-HHC
T ss_pred ccccccccccccccccchhHHHHHHHcCCceeeeccccccccccccccccccccccccccccccccccccchhhcccccc
Confidence 0 01111 1100 1100 0 01000 0
Q ss_pred h-----------------------c-CCCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4034 145 M-----------------------F-TRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDN 200 (221)
Q Consensus 145 ~-----------------------~-~~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~ 200 (221)
+ + .++|+++++|+.++|+++|.+|++++++.++++.+|++|++|++.+++.+ ..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~~-~~~ 233 (365)
T PF01663_consen 155 LYLAWFFEQSPELDEWITDAAEYLIQKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDENG-LLE 233 (365)
T ss_dssp HSTCHHHSSSHHHHHHHHHHHHHHHHTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTT--TT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC-CCC
Confidence 0 0 12789999999999999999999999999999999999999999999998 889
Q ss_pred cEEEEEEcCCCCCCC
Q psy4034 201 KTAFIYSSDHGMTDW 215 (221)
Q Consensus 201 ~t~viitSDHG~~~~ 215 (221)
+|+|||+|||||.+.
T Consensus 234 ~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 234 DTNIIVTSDHGMTPV 248 (365)
T ss_dssp TEEEEEEES---EEE
T ss_pred ceEEEEEccCccccc
Confidence 999999999999875
No 6
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=99.93 E-value=1.7e-25 Score=197.32 Aligned_cols=163 Identities=19% Similarity=0.232 Sum_probs=123.2
Q ss_pred ccCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccCCC
Q psy4034 39 GIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQ 118 (221)
Q Consensus 39 ~~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~ 118 (221)
..-+.+++|||++||++++++....+ .+.+|||++|++ +|......+++|++|.|+++||+||.+|.+|||++|..
T Consensus 8 ~~~~~~~vvvi~vDGl~~~~l~~~~~--~g~~P~L~~l~~--~G~~~~~~s~~Ps~T~p~~tSi~TG~~P~~HGI~gn~~ 83 (408)
T TIGR02335 8 YALPQRPTVVICVDGCDPEYINRGIA--DGVAPFIAELTG--FGTVLTADCVVPSFTNPNNLSIVTGAPPAVHGICGNYY 83 (408)
T ss_pred ecCCCCCEEEEEeCCCCHHHHHhhhh--cCCCchHHHHHh--cCceeeccCCCCCcccccceeeecCCChhhCceecceE
Confidence 34567999999999999999977421 257999999999 89887788999999999999999999999999999865
Q ss_pred CCCC-------------cccchhhccc----e--eEe-----------------ec-------------c----------
Q psy4034 119 DNPV-------------EFDHIFNQSE----F--SVA-----------------FG-------------S---------- 139 (221)
Q Consensus 119 ~~p~-------------~~d~i~~~~~----~--~~~-----------------~~-------------~---------- 139 (221)
.+|. ..+++|...+ . ... |. .
T Consensus 84 ~dp~~~~~~~~~~~~~~~~pTi~e~a~~aG~~ta~v~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~g~~~~~~~vg~~ 163 (408)
T TIGR02335 84 LDQDTGEEIMMTDAKYLRAPTILGEMSKAGVLTAVVTAKDKLRKVLGHQLKGICFSSEKADQVNLEEHGVENILALVGRP 163 (408)
T ss_pred EecCCCceEEEeChhhhCCchHHHHHHHcCCeEEEEecccccccccCcccccccccccccccccccccchHHHHHHhCCC
Confidence 5542 1234443211 0 010 00 0
Q ss_pred -h-----hhh--------hhcC-CCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEE
Q psy4034 140 -P-----DVL--------KMFT-RDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAF 204 (221)
Q Consensus 140 -~-----~~~--------~~~~-~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~v 204 (221)
+ +.. .++. +.|+++ |+.++|..+|++||.|+++.++++++|+.|++|++. +++|
T Consensus 164 ~~~~~~~~~~~~~~~~a~~~l~~~~pdll--yl~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~---------~~~v 232 (408)
T TIGR02335 164 RPDVYSADLSLFVLDAGLSLLTNERPDLM--YLSTSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ---------GAIV 232 (408)
T ss_pred CCccchHHHHHHHHHHHHHHHhccCCcEE--EecCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC---------CCEE
Confidence 0 000 0111 256765 467999999999999999999999999999998762 3899
Q ss_pred EEEcCCCCCCCC
Q psy4034 205 IYSSDHGMTDWG 216 (221)
Q Consensus 205 iitSDHG~~~~g 216 (221)
||||||||.+..
T Consensus 233 vvtaDHG~~~~~ 244 (408)
T TIGR02335 233 AITADHGMNAKT 244 (408)
T ss_pred EEECCCCCccCc
Confidence 999999998763
No 7
>KOG2126|consensus
Probab=99.89 E-value=1.6e-23 Score=192.17 Aligned_cols=169 Identities=24% Similarity=0.357 Sum_probs=133.9
Q ss_pred cCCCCcEEEEEEcCCCchhhcccccCCCCCChH---------HHHHHhhCCcc-eeeeeecCCcccccchhhhcccCCCC
Q psy4034 40 IQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPY---------IRTLLANNEAC-GGIAHTQVPTETRPGAIAMLAGFYED 109 (221)
Q Consensus 40 ~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~---------l~~l~~~~~g~-~~~~~s~~Pt~T~p~~~si~TG~~p~ 109 (221)
.....++|++++|++|+|++-... ...|. +..+-+ ++. ..+..+.+||+|......+-||..|.
T Consensus 55 ~~n~ssvvilliDaLrydf~ip~~----~~~~y~n~~~~l~~~~~l~~--~~~~l~~f~ADpPTTTlQRLKGLTTGsLPT 128 (895)
T KOG2126|consen 55 SQNYSSVVILLIDALRYDFLIPIN----SPLPYHNRGTILQELKHLNK--SKAFLAKFIADPPTTTLQRLKGLTTGSLPT 128 (895)
T ss_pred ccCccceEEEEeehhhhccccccC----CCchhhhcchhHHHHHhhCc--chhHHHHHhcCCCccHHHHhhccccCCCcc
Confidence 444566999999999999774432 22333 333333 333 33478899999999999999999999
Q ss_pred ccccccCCCCCCCcccchhhcc----ceeEeecchhhhhhcCC----------------------------------CCe
Q psy4034 110 PSAIFKGWQDNPVEFDHIFNQS----EFSVAFGSPDVLKMFTR----------------------------------DKV 151 (221)
Q Consensus 110 ~hgi~~n~~~~p~~~d~i~~~~----~~~~~~~~~~~~~~~~~----------------------------------~~~ 151 (221)
--.+..|........|++.+|. +.....|++.|..+|++ +|+
T Consensus 129 FID~GsNF~g~~I~EDNfv~Ql~~~gk~vvflGDdTW~~LFp~~f~~s~s~pSfnv~DLdtVDn~v~~~if~~l~s~dwd 208 (895)
T KOG2126|consen 129 FIDIGSNFAGPAIAEDNFVRQLVLNGKSVVFLGDDTWTSLFPNQFNKSYSFPSFNVHDLDTVDNGVIEKIFKSLNSKDWD 208 (895)
T ss_pred ceeccccCCCcccchhHHHHHHHHCCCeEEEecCccHHHhChHhhcCCCCCCCCCCccccccchHHHHHhhhhhccCchH
Confidence 8777777653334567766653 44566788877765542 689
Q ss_pred EEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCCCCC
Q psy4034 152 IFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNSM 220 (221)
Q Consensus 152 ~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~HGg 220 (221)
++..|+.++||.||++||+.+++.+++.++|+.|+++++.++ |+|+++|.+||||+..|.|||
T Consensus 209 VlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~md------edTlLvVmGDHGMt~nGdHGG 271 (895)
T KOG2126|consen 209 VLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMD------EDTLLVVMGDHGMTDNGDHGG 271 (895)
T ss_pred HHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhc------cCeeEEEecCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999984 899999999999999999999
No 8
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=99.83 E-value=4.4e-20 Score=167.49 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCCCchhhcccccC-CCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccC
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTDR-NSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKG 116 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~~-~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n 116 (221)
++|||+|++|.+|++.+.+++ + ....||||++||+ +|+.|+ ++++.| +|.|+++||+||++|..||+..|
T Consensus 2 rPNIllI~~Dd~r~d~lg~~G-~~~~~~TPnLD~LA~--eGv~F~nay~~~p-~C~PSRaSllTG~yp~~~G~~~~ 73 (500)
T TIGR03417 2 RPNILILMADQLNGTLLPDYG-PARWLHAPNLKRLAA--RSVVFDNAYCASP-LCAPSRASFMSGQLPSRTGAYDN 73 (500)
T ss_pred CCeEEEEEeCCCCccccccCC-CCCcCCCCcHHHHHH--hCceecccccCCC-ccHHHHHHHHHCCCHHhcCcccc
Confidence 589999999999999998875 2 3458999999999 999999 566665 69999999999999999999654
No 9
>PRK13759 arylsulfatase; Provisional
Probab=99.79 E-value=7.6e-19 Score=158.87 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=61.2
Q ss_pred CCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccC
Q psy4034 41 QLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKG 116 (221)
Q Consensus 41 ~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n 116 (221)
..++|||+|++|.+|++.+.+++ +....||||++|++ +|+.|+ +++..| .|.|+++||+||+||..||+.++
T Consensus 4 ~~rPNIl~I~~Ddlr~d~l~~~G-~~~~~TPnld~La~--~G~~F~nay~~~p-~c~psr~sl~TG~yp~~~g~~~~ 76 (485)
T PRK13759 4 TKKPNIILIMVDQMRGDCLGCNG-NKAVETPNLDMLAS--EGYNFENAYSAVP-SCTPARAALLTGLSQWHHGRVGY 76 (485)
T ss_pred CCCCCEEEEEECCCCHHHHHhcC-CCcCCCccHHHHHh--cCceeeceecCCC-cchhhHHHHHhcCChhhcCcccc
Confidence 34689999999999999997765 33457999999999 999999 666555 58999999999999999998653
No 10
>KOG3867|consensus
Probab=99.77 E-value=8.8e-18 Score=150.13 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=64.5
Q ss_pred cCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccC
Q psy4034 40 IQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKG 116 (221)
Q Consensus 40 ~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n 116 (221)
.+.++|+|||++|++++..+.+++ ++...|||+++||+ +|++++...+.+++|+|++++++||+||.+.|+.+.
T Consensus 26 ~~~~PNillIlaDDlG~gDlg~yG-~~~i~TPniD~LA~--~Gv~f~n~~~a~s~CtPSRaalLTGr~pirtGm~~~ 99 (528)
T KOG3867|consen 26 STDPPNILLILADDLGWGDLGCYG-NKTIRTPNIDRLAA--EGLLFTNAYAAVSLCSPSRAALLTGRYPIRTGMYHS 99 (528)
T ss_pred CCCCCCEEEEEEccCCCcccccCC-CcccCCCCHHHHHh--cccceecccccccccCchHHHHhcCCCccccccccc
Confidence 445899999999999997777776 45678999999999 999999666677789999999999999999998754
No 11
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=99.71 E-value=9.1e-17 Score=144.96 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=62.1
Q ss_pred CCcEEEEEEcCCCchhhcccccCCCC-CChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccCC
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTDRNSS-HSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGW 117 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~~~~~-~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~ 117 (221)
++|||+|+.|.+++..+..++.. .. .+|++++|++ +|+.|+...+..+.|.|++++|+||++|.++|+.++.
T Consensus 4 rPNil~i~~Ddlg~~~l~~~g~~-~~~~tp~~d~LA~--~Gv~f~n~y~~~~~c~PsRa~l~TGr~~~~~G~~~~~ 76 (475)
T COG3119 4 RPNILIIMADDLGYGDLGAYGGP-VVGPTPNIDRLAA--EGVRFTNAYTTSPCCGPSRAALLTGRYPFRTGVGGNA 76 (475)
T ss_pred CCcEEEEEeccCCCCCCCcCCCc-cccCCCCHHHHHh--cCceeeccccCcCCCchhhhHHhhCCCcccccccccc
Confidence 79999999999999999876531 22 6899999999 9999996655667799999999999999999998764
No 12
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=99.67 E-value=4.1e-16 Score=131.57 Aligned_cols=167 Identities=18% Similarity=0.290 Sum_probs=106.4
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccCCC----C
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQ----D 119 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~----~ 119 (221)
||||+|++|++|.+.+...+. ....+|+|+++++ +|+.+....+..+.|.+++.+++||.+|..+|+..+.. .
T Consensus 1 pNVv~i~~Es~~~~~~~~~~~-~~~~tP~l~~l~~--~g~~f~~~~s~~~~T~~s~~~~ltG~~~~~~~~~~~~~~~~~~ 77 (308)
T PF00884_consen 1 PNVVLIVLESLRADDLSCYGY-PIPTTPNLDRLAE--NGLRFSNAYSSGPWTSPSRFSMLTGLYPHNSGVYSNGPYQQFN 77 (308)
T ss_dssp -EEEEEEETT--TTSSGGGTS-SSSSSHHHHHHHH--TSEEESSEE-SSSSHHHHHHHHHHSS-HHHHT-SSSCSTTTCS
T ss_pred CEEEEEEcccCCCCCCCCCCC-CcccCHHHHHhhh--ccEEEEEEEeccCccccchhhhccccccccccccccccccccc
Confidence 689999999999987765542 2335999999999 99999844445567999999999999999988754321 0
Q ss_pred CCCccc---chhhcc------------------------------------------c-eeEe--------ecc------
Q psy4034 120 NPVEFD---HIFNQS------------------------------------------E-FSVA--------FGS------ 139 (221)
Q Consensus 120 ~p~~~d---~i~~~~------------------------------------------~-~~~~--------~~~------ 139 (221)
.+.... ..+++. + .... ++.
T Consensus 78 ~~~~~~~l~~~l~~~GY~t~~~~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 157 (308)
T PF00884_consen 78 LPSKFPSLPDLLKKAGYRTSFFGPWDASFYNNQAFYPSHGFDYFLGQPGLSDRIDNPRISGPFNDVNRSNEWGYSDDALF 157 (308)
T ss_dssp STTTS--HHHHHHHTT-EEEEEEES-STGGGHHCHCHHTT-SEEEEESSSGGGTTSSTTEEECTTTTESTTTCEHHHHHH
T ss_pred ccccccccHHHHhhcccccceeeccccCccccccccccCCcceEEeeecccccccccccccccccccccccccccchhhh
Confidence 100000 011100 0 0000 010
Q ss_pred hhhhhhc-C--CCCeEEEEEecCCCccCC-------CCCC-----------CCHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy4034 140 PDVLKMF-T--RDKVIFLLHFLGPDTAGH-------NFKP-----------HSKEYGDNIEAVDGIVKAMVHTLSSYYNH 198 (221)
Q Consensus 140 ~~~~~~~-~--~~~~~~~~~~~~~D~~~H-------~~g~-----------~s~~y~~~i~~~D~~i~~ll~~l~~~g~~ 198 (221)
+.+.+++ . ++|.|+++++..+...-. .+.. ....|.++++.+|++|+++++.|++.+ .
T Consensus 158 ~~~~~~l~~~~~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~l~~~~~~l~~~~-~ 236 (308)
T PF00884_consen 158 DYAIDFLLNEDDKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSPDIPDKDREMRNNYLNAIAYVDDQLGRFIEYLKEQG-L 236 (308)
T ss_dssp HHHHHHHHCTTTSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred hhhhhhhhhcccccceeEEeeccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHhhhhhhhhhhcC-C
Confidence 0111232 1 367888888877655211 1110 113589999999999999999999999 9
Q ss_pred CCcEEEEEEcCCCCCC
Q psy4034 199 DNKTAFIYSSDHGMTD 214 (221)
Q Consensus 199 ~~~t~viitSDHG~~~ 214 (221)
.++|+||||||||..-
T Consensus 237 ~d~TiiiitsDHG~~~ 252 (308)
T PF00884_consen 237 YDNTIIIITSDHGESF 252 (308)
T ss_dssp GGGEEEEEEESSSSST
T ss_pred cccceeEEecCcCccc
Confidence 9999999999999864
No 13
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.8e-16 Score=132.41 Aligned_cols=161 Identities=17% Similarity=0.271 Sum_probs=114.5
Q ss_pred CCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccCCCCCCC
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPV 122 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~p~ 122 (221)
..|+++|++||..+-.++... ..+|||++|++ +|++++..|..|++|.|+|.||+||..|.++||++.....+.
T Consensus 3 ~~K~~liGlDgvp~sl~~~f~----~~lpnl~~Lm~--~~s~G~l~S~iPpIT~~~W~sl~TG~~PGe~GiygF~~Rkg~ 76 (471)
T COG3379 3 DRKTLLIGLDGVPPSLFRQFR----DNLPNLNKLMK--NGSFGKLESGIPPITPAAWPSLFTGYNPGETGIYGFRHRKGN 76 (471)
T ss_pred cceEEEEEeCCCCHHHHHHHh----hhhhHHHHHHH--hcccccccccCCCcchhhHHHHhhccCCccccceeeecccCC
Confidence 578999999999998887764 57999999999 899999999999999999999999999999999863221110
Q ss_pred -----------------cccchhhcccee-------------------Eeecchhhh-----------------------
Q psy4034 123 -----------------EFDHIFNQSEFS-------------------VAFGSPDVL----------------------- 143 (221)
Q Consensus 123 -----------------~~d~i~~~~~~~-------------------~~~~~~~~~----------------------- 143 (221)
.||.+-.+.++. .++.+|+..
T Consensus 77 sy~~~yva~Ss~vk~~~iWD~L~~kG~k~~V~~vP~tyPpk~i~g~lvS~f~tP~~~~~~a~P~e~~~eI~~t~~~e~vf 156 (471)
T COG3379 77 SYSEPYVAHSSTVKEDPIWDLLGKKGKKSVVAGVPPTYPPKRIKGNLVSGFLTPDKSKAKAYPPELKDEIENTTGNEYVF 156 (471)
T ss_pred ccCceecccccccccccHHHHHhhcCceEEEEeCCCCCCCcccccceeeeecCCCccccccCCHHHHHHHHhccccceee
Confidence 122111111110 011111000
Q ss_pred ----------------------------hhc-CCCCeEEEEEecCCCccCCCCCCCC-----------HHHH----HHHH
Q psy4034 144 ----------------------------KMF-TRDKVIFLLHFLGPDTAGHNFKPHS-----------KEYG----DNIE 179 (221)
Q Consensus 144 ----------------------------~~~-~~~~~~~~~~~~~~D~~~H~~g~~s-----------~~y~----~~i~ 179 (221)
++. ++.++++..-+.++|.+.|.++.+- .+|. +-..
T Consensus 157 dv~~~~edk~~~i~d~~~~~~~~k~~v~~~~~~k~wD~~~~v~~gTDRv~H~~w~y~dp~H~lypg~~n~yEnvi~eyy~ 236 (471)
T COG3379 157 DVEYHDEDKDIFIEDLWENTESRKEVVKEYLSPKEWDCFGFVMIGTDRVHHALWKYLDPEHPLYPGEQNKYENVIPEYYS 236 (471)
T ss_pred eccccchhHHHHHHHHHHHHHHHHHHHHHhhCcccccceeEEEEehhHHhhhhhhhcCccccCCcccCchHhHHHHHHHH
Confidence 000 1267888888889999888654321 1244 4456
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 180 AVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 180 ~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
.+|+.||++++.+ ..++|.++|+||||+..
T Consensus 237 LvD~~IG~~~~~i-----~~~e~~l~vvSDHGf~s 266 (471)
T COG3379 237 LVDKYIGLKLEII-----GFEETYLTVVSDHGFKS 266 (471)
T ss_pred HHHHHHHHHHHhc-----cccceEEEEEecccccc
Confidence 7899999999998 46899999999999863
No 14
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=133.09 Aligned_cols=164 Identities=16% Similarity=0.252 Sum_probs=113.3
Q ss_pred cCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCcc-ccccCCC
Q psy4034 40 IQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPS-AIFKGWQ 118 (221)
Q Consensus 40 ~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~h-gi~~n~~ 118 (221)
....+|+++|++||+|+|.+.. +.||+|..++. +...|+.+.+....|..+..+|+.|..|..- ++..+..
T Consensus 256 ~a~~~NillI~vdglR~d~l~~------~~MP~la~Fa~--q~i~FtnHySsGN~t~~GlfGLFYGL~~~Y~d~vls~~t 327 (600)
T COG3083 256 PAHGPNILLITVDGLRYDALDE------KQMPNLADFAN--QNIRFTNHYSSGNSTQAGLFGLFYGLSATYWDSVLSART 327 (600)
T ss_pred CCCCCCEEEEEeccccccccCh------hhChhHHHHHh--hhcccccccCCCCccccchheeeccCChhHHHHHHhcCC
Confidence 3457889999999999999966 78999999999 9999996666667799999999999988763 4443211
Q ss_pred CCCCccc-------------------chhhcc-----c--eeEeec-----chhhhhhcC-----CCCeEEEEEecCCCc
Q psy4034 119 DNPVEFD-------------------HIFNQS-----E--FSVAFG-----SPDVLKMFT-----RDKVIFLLHFLGPDT 162 (221)
Q Consensus 119 ~~p~~~d-------------------~i~~~~-----~--~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~D~ 162 (221)
.|...+ ..|+++ + +..--+ ..+|..+|. ++|.|.++.+.....
T Consensus 328 -~p~Lie~L~qq~YQfglfss~~F~splfrqalf~~l~~~~~~t~~~~~~~~t~~~~wf~~~~~~d~PwFs~L~l~~~~~ 406 (600)
T COG3083 328 -PPALIEALRQQNYQFGLFSSDGFKSPLFRQALFSDLSLPALVTQSSDDERATQWLLWFGRYRDEDNPWFSYLSLNSSHA 406 (600)
T ss_pred -chHHHHHHHhcCceEEeeccCCCCCchHHHHHhhhcCccccccCCchHHHHHHHHHHHHHhhccCCCceEEEEcccccc
Confidence 111111 111111 0 000001 123334442 367788887765322
Q ss_pred cCC------CC-CCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 163 AGH------NF-KPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 163 ~~H------~~-g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
... +. -+....|..+++++|++|+++++.+++.+ ..|||+||||||||..
T Consensus 407 ~~~~~s~q~~~~~~~~~~Y~~a~~~vD~~I~~vLe~L~~~~-~L~NTvVIITs~HG~e 463 (600)
T COG3083 407 NDDPSSNQAKARPPFKNRYQNALREVDSQIGRVLEQLRNSG-LLDNTVVIITADHGEE 463 (600)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccceEEEEECCCCcc
Confidence 211 00 01236799999999999999999999999 9999999999999965
No 15
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=99.46 E-value=4.6e-13 Score=106.18 Aligned_cols=151 Identities=19% Similarity=0.283 Sum_probs=87.8
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcce-e---eeeecCCcccccchhhhcccCCCCcc--ccccCC
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACG-G---IAHTQVPTETRPGAIAMLAGFYEDPS--AIFKGW 117 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~-~---~~~s~~Pt~T~p~~~si~TG~~p~~h--gi~~n~ 117 (221)
+||+||++||||++...... + .|.+ ++.. . ...+..||+|.-+++||++|..|..- .....+
T Consensus 1 ~kv~liv~Dgmrye~~~eL~-------~---~L~~--~~~~~~~~~~~~a~LPS~T~~sr~ALl~g~~~~~~~~~~~~~~ 68 (181)
T PF08665_consen 1 KKVALIVSDGMRYEQARELA-------E---SLSR--EGWFEVELDPALAWLPSITEVSRAALLPGKLPRYFAKDFPDVW 68 (181)
T ss_pred CeEEEEEEcCCCHHHHHHHH-------H---HHhh--ccCcceeeeeeeEeccchhHHHHHHHcCCCChhhhhccCCcee
Confidence 58999999999999986532 2 3332 2221 1 37789999999999999999998642 111101
Q ss_pred CCCCCcc------cchhhcc-ceeEee------cchhhhhhcCCCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHH--
Q psy4034 118 QDNPVEF------DHIFNQS-EFSVAF------GSPDVLKMFTRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVD-- 182 (221)
Q Consensus 118 ~~~p~~~------d~i~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D-- 182 (221)
.+.... ..+++.. .....+ ...+..+.+ .+.+++++++..+|..+|+.+..........+.++
T Consensus 69 -~d~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~vv~vv~n~ID~~~~~~~~~~~~~~~~~~~i~~~ 146 (181)
T PF08665_consen 69 -VDEKSWFGFWNREKILKASNSVAFHYKDLMEMNRDEVRDLI-KGTRVVYVVHNFIDDLGHKRKSEQLGFEAMYRAIELW 146 (181)
T ss_pred -ECCeeccchhhhHHHHHhhhhhhEehhhhhccchhhHHhcc-CCCCEEEEEEcchhhhhCcccccchhHHHHHHHHhhh
Confidence 011100 1111110 000110 112222222 26789999999999999965444433222233332
Q ss_pred ---HHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 183 ---GIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 183 ---~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
..|.+++..+.+.| ..|+||||||+.
T Consensus 147 ~~~~~L~~li~~l~~~~-----~~V~ITsDHG~v 175 (181)
T PF08665_consen 147 WFEHELRSLIKELRNAG-----RRVVITSDHGFV 175 (181)
T ss_pred hhhHHHHHHHHHHHhcC-----ceEEEECCCCCE
Confidence 24556666665444 789999999985
No 16
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=99.31 E-value=4.5e-11 Score=108.81 Aligned_cols=171 Identities=21% Similarity=0.360 Sum_probs=104.4
Q ss_pred CCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccC----
Q psy4034 42 LAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKG---- 116 (221)
Q Consensus 42 ~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n---- 116 (221)
+++++|+|+.|..|+|.+.-++ .....+|+|++..+ ++|+.+. +.++. +.|.+++.+|+||.++..+.-..+
T Consensus 222 ~~~~vVlViGES~R~d~~slyG-Y~r~TTP~L~~~la-~~~~~f~n~~S~g-t~T~~Slp~mls~~~~~~~~~~~nl~~i 298 (522)
T PRK09598 222 SKSVVVLVIGESARKHNYALYG-YEKPTNPRLSKRLA-THELTLFNATSCA-TYTTASLECILDSSFKNTSNAYENLPTY 298 (522)
T ss_pred CCCEEEEEEECCccHhhcccCC-CCCCCChhhhhhcc-cCceEEcceeeCC-CCHHHHHHHHccCCCcccccccCCHHHH
Confidence 4556899999999999986655 23468999987433 2788887 55555 569999999999988765321111
Q ss_pred ---------CCCC----C-Ccccchhhccc------eeEeecchhhh----hhcC---CCCeEEEEEecCCCcc--CC--
Q psy4034 117 ---------WQDN----P-VEFDHIFNQSE------FSVAFGSPDVL----KMFT---RDKVIFLLHFLGPDTA--GH-- 165 (221)
Q Consensus 117 ---------~~~~----p-~~~d~i~~~~~------~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~D~~--~H-- 165 (221)
|..+ + ...+...++.. ....--++.+. +... ++|.++++|+.+.... ..
T Consensus 299 lk~aGy~T~W~snq~g~~~~~~~~~~~~~~~~~~~~~~~~~~De~LL~~l~~~l~~~~~~p~fivlH~~GSH~P~Y~~Ry 378 (522)
T PRK09598 299 LTRAGIKVFWRSANDGEPNVKVTSYLKNYELIQKCPNCEAPYDESLLYNLPELIKASSNENVLLILHLAGSHGPNYDNKY 378 (522)
T ss_pred HHHCCCeEEEEECCCCCCCccceeeccchhccccCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCcCCCCCcccccC
Confidence 1111 0 01111111000 00000011111 2222 2467888987664431 00
Q ss_pred -----CCCCC---------C-----HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCCCC
Q psy4034 166 -----NFKPH---------S-----KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNS 219 (221)
Q Consensus 166 -----~~g~~---------s-----~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~HG 219 (221)
++.|. + ..|.++++++|..|+++++.+++.+ ++|.+|++||||.. .|.||
T Consensus 379 P~~f~~F~p~~~~~~l~~~~~~~~~n~YdnsI~ytD~~l~~ii~~Lk~~~---~~t~iIy~SDHGe~-lge~g 447 (522)
T PRK09598 379 PLNFRVFKPVCSSVELSSCSKESLINAYDNTIFYNDYLLDKIISMLKNLK---QPALMIYLSDHGES-LGEGA 447 (522)
T ss_pred ChhhcccCCCCcchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEccCccc-cccCC
Confidence 11111 1 2489999999999999999999876 39999999999976 44443
No 17
>KOG3731|consensus
Probab=99.31 E-value=7.3e-11 Score=102.50 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccC
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKG 116 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n 116 (221)
.+|||+++.|+.+-+.-.- .-..|.++-+.+ .|.-|....+..++|.|++.||+||+||+.|++..|
T Consensus 34 ~PNvIlvLTDDqD~eLGsm-----~vm~kt~~~~~d--gg~~Fi~aYvttslCcPSRnSiLTGky~hnhhv~tn 100 (541)
T KOG3731|consen 34 PPNVILVLTDDQDVELGSM-----AVMFKTLTIMLD--GGAHFISAYVTTSLCCPSRNSILTGKYVHNHHVYTN 100 (541)
T ss_pred CCCEEEEEccCcchhcccc-----cccchHHHHHhc--CCceEEecccCccccccccchhhhcccccccccccc
Confidence 3799999999998333221 245677777777 899998545555679999999999999999999865
No 18
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=99.26 E-value=3.4e-11 Score=114.67 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=98.0
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcc---eeeeeecCCcccccchhhhcccCC---CC-ccc-cc-
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEAC---GGIAHTQVPTETRPGAIAMLAGFY---ED-PSA-IF- 114 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~---~~~~~s~~Pt~T~p~~~si~TG~~---p~-~hg-i~- 114 (221)
+|++||++||||+|...... + .|.+ +... .-.+.+..||.|..+++||+-+.- .. ..| +.
T Consensus 457 ~rv~vii~DaLRyeva~eL~-------~---~L~~-~~~~~~~l~~~~s~LPS~T~~GMAALLP~~~L~~~~~~~~~V~v 525 (844)
T TIGR02687 457 KKVFVIISDALRYEAAEELF-------E---QLNK-ETRFIAELSSQLGVLPSYTQLGMAALLPHNALAYRDNSGREVLV 525 (844)
T ss_pred CcEEEEEEccccHHHHHHHH-------H---Hhhh-ccCceEEeeeeeecCCchhhcchHhhCCCCcceeccCCCceEEE
Confidence 68999999999999987642 1 2222 1111 122678999999999999996642 11 111 21
Q ss_pred cCCCC-CCCcccchhhcc-ceeEee--------cchhhhhhcCCCCeEEEEEecCCCccCCCCCCCCH---HHHHHHHHH
Q psy4034 115 KGWQD-NPVEFDHIFNQS-EFSVAF--------GSPDVLKMFTRDKVIFLLHFLGPDTAGHNFKPHSK---EYGDNIEAV 181 (221)
Q Consensus 115 ~n~~~-~p~~~d~i~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~H~~g~~s~---~y~~~i~~~ 181 (221)
++... .+..-+++++.. ...... ...+..+++. ++.++++|...+|.+||+.|++++ +..++++++
T Consensus 526 DG~~t~~~~~R~kiL~~~~~~~~ai~~~dl~~~~~~e~r~~~~-~~~~vyiY~~~ID~~g~~~~~e~~~f~a~~~~l~el 604 (844)
T TIGR02687 526 DGQSSSGLENRNKILQSKKYDGLAFKADDLMRYKRDEGRELIR-DKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVEL 604 (844)
T ss_pred CCEeCCCHHHHHHHHhhccCCceEEEHHHHhhhhHHHHHHhhc-CCcEEEEecCccchhhcccCCcchHHHHHHHHHHHH
Confidence 11110 111122333321 111111 1122233333 688999999999999999999885 677889999
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 182 DGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 182 D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
++.+++|.+.+. .+.|+||||||+..
T Consensus 605 ~~~v~~l~~~l~-------~~~i~iTADHGfi~ 630 (844)
T TIGR02687 605 KKLVKYLINRLN-------GTNIIVTADHGFLY 630 (844)
T ss_pred HHHHHHHHHhcC-------CcEEEEECCCcccc
Confidence 999999888762 35999999999864
No 19
>PRK10649 hypothetical protein; Provisional
Probab=99.20 E-value=3e-10 Score=104.80 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=101.1
Q ss_pred CCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhh-CCcceee-eeecCCcccccchhhhcccCCCCcc-------c
Q psy4034 42 LAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLAN-NEACGGI-AHTQVPTETRPGAIAMLAGFYEDPS-------A 112 (221)
Q Consensus 42 ~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~-~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~h-------g 112 (221)
+.+++|+|+.|..|.+.+..++ .....||+|+++++. .+++.|+ ..++.| .|.+++.+++|....... .
T Consensus 235 ~p~niVlVIGES~r~d~~slyG-Y~r~TTP~Ld~l~~~~~~~~~F~n~~S~~~-~T~~Sl~~~LS~~~~~~~~~~~~~~~ 312 (577)
T PRK10649 235 APRTLVLVIGESTQRGRMSLYG-YPRETTPELDALHKTDPGLTVFNNVVTSRP-YTIEILQQALTFADEKNPDLYLTQPS 312 (577)
T ss_pred CCCeEEEEEEeccCHhhccccC-CCCCCChhHHhhhccCCCeEEeCceecCCc-CHHHHHHHHccCCcccchhhhccCCC
Confidence 3447999999999999997766 345689999999851 1567887 566555 599999999985432111 1
Q ss_pred ccc---------CCCCCC-------CcccchhhccceeE--------eec--chhhh----hhcC--CCCeEEEEEecCC
Q psy4034 113 IFK---------GWQDNP-------VEFDHIFNQSEFSV--------AFG--SPDVL----KMFT--RDKVIFLLHFLGP 160 (221)
Q Consensus 113 i~~---------n~~~~p-------~~~d~i~~~~~~~~--------~~~--~~~~~----~~~~--~~~~~~~~~~~~~ 160 (221)
+.. -|..+- ..++.+-++..... .+. +.++. ++.. +++.|+++|+.+.
T Consensus 313 l~~llk~aGY~T~wisNq~~~~~~~~~~~~~~~~~d~~~f~~~~~~~~~~~~D~~LL~~l~~~L~~~~~~~fivlHl~Gs 392 (577)
T PRK10649 313 LMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQNAREYDTNVLKPFSEVLADPAPKKFIIVHLLGT 392 (577)
T ss_pred HHHHHHHCCCeEEEEeCCccccccchhhhHhhhhccchhhccccccCCCCCcHHHHHHHHHHHHhccCCCcEEEEEecCC
Confidence 100 011000 00000000000000 001 11222 2222 2467889998764
Q ss_pred CccC-C-------CCCCCC---------------HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 161 DTAG-H-------NFKPHS---------------KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 161 D~~~-H-------~~g~~s---------------~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
...- . ++.+.. ..|.++++++|..|+++++.+++.+ +||.+|++||||..
T Consensus 393 H~~Y~~RyP~~~~~F~~~~~~~~~~~~~~~~~~~~~Y~nsI~y~D~~l~~ii~~Lk~~~---~nt~iiy~SDHGe~ 465 (577)
T PRK10649 393 HIKYKYRYPENQGKFDDRTGHVPPGLNADELESYNDYDNANLYNDHVVASLIKDFKATD---PNGFLVYFSDHGEE 465 (577)
T ss_pred CcchhhhCCHHHhcCCCCCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcCC---CCeEEEEECCCCcc
Confidence 4320 0 121111 2589999999999999999999854 89999999999986
No 20
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=99.15 E-value=7.4e-10 Score=103.39 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=100.9
Q ss_pred ccCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeee--cCCcccccchhhhcccCCCC--c--cc
Q psy4034 39 GIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHT--QVPTETRPGAIAMLAGFYED--P--SA 112 (221)
Q Consensus 39 ~~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s--~~Pt~T~p~~~si~TG~~p~--~--hg 112 (221)
...+++|||+|.+.++...++.... ....+|+|++|++ +|+.|+... .-...|..++.++++|.+-. . .+
T Consensus 157 ~p~kK~NVViI~LESle~ty~d~~~--~~~ltP~LdkLak--egl~FsN~~q~~gt~~Ti~GmfAs~cGlPl~~pf~~n~ 232 (762)
T PRK03776 157 IPNPKLNLVYIYGESLERTYFDNEA--FPGLTPELGALKN--EGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNA 232 (762)
T ss_pred cCCCCCcEEEEEEecCChhhhccCC--CCCCChhHHHHHh--cCeeecCceecCCCCccHHHHHHHHcCCCCCCCCCCcc
Confidence 3456789999999999999886532 2367899999999 999998433 22345888999999998411 0 01
Q ss_pred c--ccCCCCC---------------------------C------Ccccchhhccc--e-------eEeec--chhhh---
Q psy4034 113 I--FKGWQDN---------------------------P------VEFDHIFNQSE--F-------SVAFG--SPDVL--- 143 (221)
Q Consensus 113 i--~~n~~~~---------------------------p------~~~d~i~~~~~--~-------~~~~~--~~~~~--- 143 (221)
. ....... . ..+|.++.... . ...|| ++...
T Consensus 233 s~~~~~f~P~~~cLgdILK~~GY~T~Fi~G~d~~F~n~~~f~~~hGFD~~yg~~d~~~~~~~~~~~n~WG~~Dd~Lfd~A 312 (762)
T PRK03776 233 SASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEA 312 (762)
T ss_pred cccccccCCccccHHHHHHhCCCceEEEeCCCcCcCchhhhHHhCCCcEEecchhcccccccccccCCcccCcHHHHHHH
Confidence 0 0000000 0 01222211100 0 01233 22111
Q ss_pred -hhcC-----CCCeEEEEEecCCCcc-CCC--------CC--CCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Q psy4034 144 -KMFT-----RDKVIFLLHFLGPDTA-GHN--------FK--PHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIY 206 (221)
Q Consensus 144 -~~~~-----~~~~~~~~~~~~~D~~-~H~--------~g--~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~vii 206 (221)
+.+. ++|-++++...++.+. ++. +. ....++..+++.+|.+||++++.+++.+ ..+||+||+
T Consensus 313 ~e~l~eLsk~~kPFfl~llTlstH~P~g~~~~~c~~~~y~~~g~~~~~~~~v~~~D~~iG~fi~~Lk~~g-~~dNTiIV~ 391 (762)
T PRK03776 313 WKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKSYDFDGKPNQSFSAVSCSQENIAALINKIKASP-WFKNTVIVV 391 (762)
T ss_pred HHHHHHhhcCCCCEEEEecCCCCcCCCccCchhhcccccccCCcchHHHHHHHHHHHHHHHHHHHHHhCC-CccCeEEEE
Confidence 1111 1343333322222222 110 10 1235678899999999999999999999 999999999
Q ss_pred EcCCCCC
Q psy4034 207 SSDHGMT 213 (221)
Q Consensus 207 tSDHG~~ 213 (221)
+||||..
T Consensus 392 ~sDHG~m 398 (762)
T PRK03776 392 SSDHLAM 398 (762)
T ss_pred EccCCcc
Confidence 9999975
No 21
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=99.10 E-value=3.4e-09 Score=98.73 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 171 SKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 171 s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
...|.++++.+|++|+++++.+++.| ..+||+||++||||..
T Consensus 354 d~~Yl~tI~ysD~aIG~FId~LKksg-lydNTIIV~~GDH~~~ 395 (703)
T PRK12363 354 DIGMLHAIKCSDRLIGQLVDRIRNSR-YGKNTIIVIASDHLAM 395 (703)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCeEEEEEcCCCcc
Confidence 35688999999999999999999999 9999999999999953
No 22
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=99.06 E-value=1.5e-09 Score=99.18 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=100.0
Q ss_pred CCc-EEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccCCCCC
Q psy4034 43 AKR-VVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDN 120 (221)
Q Consensus 43 ~~~-vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~~ 120 (221)
+++ +|+|+-+..|.+.+.-++. ....+|.|++ + +.+.|+ ..++. +.|.++..+|+|+.++....-... ...
T Consensus 233 ~~~~vVlViGESaR~~~~slyGY-~r~TtP~L~~--~--~~~~F~~~~S~g-t~T~~Svp~mfS~~~~~~y~~~~~-~~~ 305 (545)
T PRK11598 233 RKNLTILVVGETSRAENFSLGGY-PRETNPRLAK--D--NVIYFPHTTSCG-TATAVSVPCMFSNMPRKHYDEELA-HHQ 305 (545)
T ss_pred CCcEEEEEehhhHHHhhcCCCCC-CCCCCccccc--c--CceeecccccCc-cchHHHHHHHhcccccccccchhh-hhc
Confidence 455 6788999999999866552 3457899753 2 344577 55555 459999999999986643221100 000
Q ss_pred C--------Ccccchhhccc--------------------eeEeec----ch----hhhhhcC--CCCeEEEEEecCCCc
Q psy4034 121 P--------VEFDHIFNQSE--------------------FSVAFG----SP----DVLKMFT--RDKVIFLLHFLGPDT 162 (221)
Q Consensus 121 p--------~~~d~i~~~~~--------------------~~~~~~----~~----~~~~~~~--~~~~~~~~~~~~~D~ 162 (221)
+ ..+++.|..+. ...+-+ ++ ...+... +++.++++|+.+...
T Consensus 306 ~~l~d~l~~aG~~t~W~~Nq~g~~g~~~r~~~~~~~~~~~~~~~~~~~~~De~LL~~l~~~L~~~~~~~fivLH~~GSH~ 385 (545)
T PRK11598 306 EGLLDIIQRAGINVLWNDNDGGCKGACDRVPHQDVTALNLPGQCIDGECYDEVLFHGLENYINNLQGDGVIVLHTIGSHG 385 (545)
T ss_pred ccHHHHHHHcCCeEEeecCCCCCcchhcccchhhhhhhccccccCCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 0 00111111000 000000 11 1112221 245688999877543
Q ss_pred c--CCC-------CCCC--------------CHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCCCC
Q psy4034 163 A--GHN-------FKPH--------------SKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNS 219 (221)
Q Consensus 163 ~--~H~-------~g~~--------------s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~HG 219 (221)
. ..+ +.|. -..|.++++++|..|+++++.+++.+ ..+||.+|++||||.. .|.||
T Consensus 386 P~Y~~RyP~~~~~F~p~~~~~~~~~~~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~~~-~~~nT~iIy~SDHGe~-lge~g 463 (545)
T PRK11598 386 PTYYNRYPPQFRKFTPTCDTNEIQTCTQQQLVNTYDNTILYVDYIVDKAINLLKQHQ-DKFNTSLVYLSDHGES-LGENG 463 (545)
T ss_pred cchhhcCChhhccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCeEEEEECcCCCc-cccCC
Confidence 2 111 1211 12389999999999999999999998 7889999999999976 45554
No 23
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=98.97 E-value=5.1e-09 Score=92.08 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=48.0
Q ss_pred eEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 151 VIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 151 ~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
-|+++....+|..+|.. +...+.+++.++|+.|+++++.+++ .++|+||||||||..
T Consensus 251 Ffl~ve~~~iD~~gH~~--d~~~~~~~l~~~D~av~~~l~~l~~----~~dTLiIvTADHg~~ 307 (384)
T cd00016 251 FFLMVEGGRIDHAHHAN--DAAGALSETLAFDDAVEAALDFAKK----DGDTLVVVTADHSHG 307 (384)
T ss_pred EEEEEeCCCCCcccCCC--cHHHHHHHHHHHHHHHHHHHHHhhC----CCCeEEEEECCCCCC
Confidence 35566667799999976 4567999999999999999999972 478999999999983
No 24
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=98.81 E-value=1.3e-07 Score=86.79 Aligned_cols=159 Identities=17% Similarity=0.273 Sum_probs=91.0
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcce-eeeeecCCcccccchhhhcccCCCCc---------ccc
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACG-GIAHTQVPTETRPGAIAMLAGFYEDP---------SAI 113 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~-~~~~s~~Pt~T~p~~~si~TG~~p~~---------hgi 113 (221)
+.||+|+-+..|.|.+.-++ .....+|+|++ + +++. ++..++ .+.|..+..+|+++..... ..+
T Consensus 248 ~~vVlViGESaRad~~slyG-Y~r~TtP~L~~--~--~~~~~f~~~S~-gt~T~~Slp~mfs~~~~~~~~~~~~~~~~nl 321 (558)
T PRK11560 248 TYVVFIIGETTRWDHMGILG-YERNTTPKLAQ--E--KNLAAFRGYSC-DTATKLSLRCMFVREGGAEDNPQRTLKEQNV 321 (558)
T ss_pred CEEEEEEEcccCHhhcccCC-CCCCCCcchHh--c--CCEEEecCccC-CccchhhhHHHhcCCCccccchhhhcccCCH
Confidence 35778999999999885544 23568999987 3 4544 446444 4668888899988765321 011
Q ss_pred cc-----------------CCCCCCCcccch-hhcc-c-eeEeec----c----hhhhhhcCC---CCeEEEEEecCCCc
Q psy4034 114 FK-----------------GWQDNPVEFDHI-FNQS-E-FSVAFG----S----PDVLKMFTR---DKVIFLLHFLGPDT 162 (221)
Q Consensus 114 ~~-----------------n~~~~p~~~d~i-~~~~-~-~~~~~~----~----~~~~~~~~~---~~~~~~~~~~~~D~ 162 (221)
.. .|..+....+++ +... . .....| + +++.+...+ ++.++++|+.+...
T Consensus 322 ld~l~~aGy~t~w~SnQ~~~w~~n~~~~~~~~~~~~~~~~~~~~g~~~~D~~LL~~l~~~L~~~~~~~~~ivLH~~GSH~ 401 (558)
T PRK11560 322 FAVLKQLGFSSELFAMQSEMWFYNNTMADNYAYREQIGAEPRNRGKPVDDMLLVDEMKQSLGRNPDGKHLIILHTKGSHY 401 (558)
T ss_pred HHHHHHCCCcEEEeecccceeeecCcccccchhhhhcccccCCCCCCcChHHHHHHHHHHHHhcCCCCeEEEEeccCCCc
Confidence 00 011110001110 0000 0 000011 1 112223321 34688898776443
Q ss_pred cC--------CCCCCCC-------------HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 163 AG--------HNFKPHS-------------KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 163 ~~--------H~~g~~s-------------~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.= .++.|.. ..|.+++.++|..|+++++.|++ ++|+||++||||..
T Consensus 402 ~Y~~RyP~~f~~F~p~~~~~~~~c~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~-----~nTivIy~SDHGe~ 468 (558)
T PRK11560 402 NYTQRYPRSFARYQPECIGVDSGCSKAQLINSYDNSVLYVDHFISSVIDQLRD-----KKAIVFYAADHGES 468 (558)
T ss_pred ChhhcCCHhhhccCCcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCeEEEEEcCCCCc
Confidence 11 1122211 23899999999999999999975 57999999999985
No 25
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=98.78 E-value=7.6e-09 Score=86.19 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCCC
Q psy4034 148 RDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKN 218 (221)
Q Consensus 148 ~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~H 218 (221)
++.+|+++|+..+|..||.. +.++|.++++.+|+.|++|++.+++ +++++|||||||..+...|
T Consensus 139 ~~~~~v~~~~~~~D~~GH~~--~~~~~~~~ie~~D~~l~~l~~~~~~-----~~~~liiTaDHg~~~~~~~ 202 (252)
T PF01676_consen 139 DKYDFVFVHVKGTDEAGHRG--DPEAYIEAIERIDRFLGRLLEALDK-----EDDLLIITADHGNDETMGH 202 (252)
T ss_dssp TTSSEEEEEEEHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHH-----TTEEEEEEESSBSTTTSBS
T ss_pred ccCCeEEEeecCcchhhccC--CHHHHHHHHHHHHHHHHHHHHHHhc-----CCCEEEEECCCCCccccCC
Confidence 37799999999999999985 4588999999999999999999964 4589999999999875443
No 26
>PRK05434 phosphoglyceromutase; Provisional
Probab=98.70 E-value=3.6e-08 Score=89.16 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=53.6
Q ss_pred CCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 148 RDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 148 ~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
++++|+++|+..+|.+||..+ .+++.++++.+|++|++|++.+++.+ .+||||||||+.+
T Consensus 386 ~~~Dfv~vnf~~~D~vGHtg~--~~a~~~AIe~vD~~LGrll~aLk~~g-----~ivIITADHGn~e 445 (507)
T PRK05434 386 GKYDFIILNFANPDMVGHTGN--LEAAVKAVEAVDECLGRVVDAVLKVG-----GTLLITADHGNAE 445 (507)
T ss_pred cCCCEEEEEecCcchhhcCCC--HHHHHHHHHHHHHHHHHHHHHHHhCC-----CEEEEEcCCCccc
Confidence 368999999999999999874 68899999999999999999998876 3899999999643
No 27
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=98.70 E-value=5.3e-08 Score=84.92 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=51.4
Q ss_pred CeEEEEEecCCCc-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 150 KVIFLLHFLGPDT-AGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 150 ~~~~~~~~~~~D~-~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
++|+|+|+.++|. .||.. +++.|.++++++|+.|++|++.|+ +++++|||||||+.+
T Consensus 270 ~~lif~nl~d~D~~~GH~~--d~~~y~~ale~vD~~Lg~ll~~L~------~~tllIITADHG~Dp 327 (381)
T TIGR01696 270 TGISFTNLVDFDALWGHRR--DVAGYAAALELFDRRLPELFSLLR------EDDLLIITADHGNDP 327 (381)
T ss_pred CCEEEEEeCCCccccCCCC--CHHHHHHHHHHHHHHHHHHHHHhc------cCCEEEEECCCCCCC
Confidence 6899999999996 79986 789999999999999999999984 468999999999943
No 28
>PRK12383 putative mutase; Provisional
Probab=98.68 E-value=5.9e-08 Score=85.36 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=53.0
Q ss_pred CeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCC
Q psy4034 150 KVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGK 217 (221)
Q Consensus 150 ~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~ 217 (221)
.+|+|+|+.++|.+||...+ +.|.++++++|+.|++|++.++ +++++|||||||......
T Consensus 287 ~dlvfvnl~~~D~~GH~~d~--~~y~~aiE~iD~~lg~ll~~L~------~~~lliITaDHG~d~~~~ 346 (406)
T PRK12383 287 TAFICTNIQETDLAGHAEDV--ARYAERLEVVDRNLARLLEAMT------PDDCLVVMADHGNDPTIG 346 (406)
T ss_pred CCEEEEeccCCccccccCCH--HHHHHHHHHHHHHHHHHHHHhc------cCCEEEEEcCCCCCCCCC
Confidence 68999999999999999865 8899999999999999999984 468999999999854433
No 29
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=98.61 E-value=9.2e-07 Score=80.52 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=96.7
Q ss_pred cCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCCCCccccccCCC-
Q psy4034 40 IQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQ- 118 (221)
Q Consensus 40 ~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~- 118 (221)
.....+|++|++|+++.-.+. ..||-..++++..+.+.+..+...-.-|.|+..+|+||..-....+...|.
T Consensus 123 ~~~~~sV~ilgiDS~Sr~~f~-------R~mPkT~~~l~~~~~~~f~gyn~vgdnt~~Nl~alltG~~~~~~~~~~~~~~ 195 (497)
T PF02995_consen 123 SESKPSVLILGIDSMSRMNFR-------RSMPKTVKFLRELGAVEFKGYNKVGDNTFPNLMALLTGKIFSEKELKADCNK 195 (497)
T ss_pred cCCCCcEEEEEeeccChhhhh-------hcCcHHHHHHHhCCCEEEccccccCCCcHHHHHHHHhcCCCCchhhcccccc
Confidence 456778999999999988775 468877776662234445566666677999999999995211111211111
Q ss_pred -CCC---Ccccchhhccce---------------------------------------------e------Eeecc----
Q psy4034 119 -DNP---VEFDHIFNQSEF---------------------------------------------S------VAFGS---- 139 (221)
Q Consensus 119 -~~p---~~~d~i~~~~~~---------------------------------------------~------~~~~~---- 139 (221)
... ...+-+|+.-+. . .+.|.
T Consensus 196 ~~~~~~~d~~~~iw~~fk~~GY~T~~~ED~~~~~~f~y~~~GF~~~ptDhy~rpf~~~~e~~~~~~~~~~~~C~g~~~~~ 275 (497)
T PF02995_consen 196 PYCKGYLDKCPFIWKDFKKAGYVTAYAEDWPSIGTFNYRKKGFKKQPTDHYLRPFMLAAEKHLNKFRRFGLKCLGGRESH 275 (497)
T ss_pred ccCCCCcccccHHHHHHhhcCceEEEecCcccccccccCCCCCCCCCCCcccchHHHHHHHhccceeccCCCccCchHHH
Confidence 000 001111111000 0 01111
Q ss_pred -------hhhhhhcCCCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCC
Q psy4034 140 -------PDVLKMFTRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212 (221)
Q Consensus 140 -------~~~~~~~~~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~ 212 (221)
.++.+.+.+.+.|.+.++... .|. +.+.+..+|..+.++++.+++.| ..+||+||+.||||.
T Consensus 276 ~~~~dy~~~f~~~y~~~~~F~~~w~~~~---~h~-------~~~~~~~~D~~~~~~l~~~~~~g-~l~nT~vi~~SDHG~ 344 (497)
T PF02995_consen 276 EYLLDYIEQFMEAYKDRPKFGFFWFNSL---SHD-------DFNGPSSLDDDLLDFLEKLQEEG-VLDNTFVIFMSDHGL 344 (497)
T ss_pred HHHHHHHHHHHHHhhccceeeEEEeccc---ccc-------ccchhHHHHHHHHHHHHHhhhcC-cccccEEEEEcCCCc
Confidence 111223344676777766432 333 23688999999999999999999 999999999999997
Q ss_pred C
Q psy4034 213 T 213 (221)
Q Consensus 213 ~ 213 (221)
.
T Consensus 345 R 345 (497)
T PF02995_consen 345 R 345 (497)
T ss_pred c
Confidence 5
No 30
>PRK05362 phosphopentomutase; Provisional
Probab=98.55 E-value=2.3e-07 Score=81.50 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=50.7
Q ss_pred CCeEEEEEecCCCcc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 149 DKVIFLLHFLGPDTA-GHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~-~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+++|+++++.++|.. ||..++ +.|.++++++|+.|+++++.++ +++++|||||||+.
T Consensus 277 ~~~fvfvn~~~~D~~~GH~~~~--~~y~~ale~~D~~lg~ll~~L~------~~tlliiTaDHG~d 334 (394)
T PRK05362 277 DNGLVFTNLVDFDSLYGHRRDV--AGYAAALEEFDARLPELLAALK------EDDLLIITADHGND 334 (394)
T ss_pred CCcEEEEecccCccccCCcCCH--HHHHHHHHHHHHHHHHHHHHhc------cCCEEEEeCCCCCC
Confidence 478999999999984 998754 8899999999999999999984 46899999999974
No 31
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=98.52 E-value=2.2e-07 Score=83.78 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+++|+++++..+|-+||.. ..++|.++++.+|++|++|++.+++.| ..||||||||..
T Consensus 381 k~dfi~vnfan~DmvGHtg--~~~a~v~AIE~vD~~LGrIl~aLke~G-----~~VIiTADHGna 438 (501)
T TIGR01307 381 KFDLIVVNFANPDMVGHTG--NFEAAIKAVEALDVCLGRIVEACKKVG-----GTLFLTADHGNA 438 (501)
T ss_pred CCCEEEEECCCcccccCCC--CHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEEEEEcCCCCh
Confidence 5899999999999999975 456899999999999999999999876 479999999963
No 32
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=98.48 E-value=3.9e-07 Score=82.61 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=51.8
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~ 212 (221)
+.+|++++|..+|.+||.. +.+++.++++.+|+.|++|++.+++.+ ..+|||||||-
T Consensus 420 ~ydfi~vNfan~DmvGHtG--~~ea~ikAIE~vD~~Lg~Il~al~~~g-----~~liITADHGN 476 (558)
T PLN02538 420 KFDQVRVNLANGDMVGHTG--DLEATIVACEAVDAAVKEILDAVEQVG-----GIYLVTADHGN 476 (558)
T ss_pred CCCEEEEeccCcccccCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CEEEEeCCCCC
Confidence 6899999999999999975 678899999999999999999997654 88999999993
No 33
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=98.24 E-value=2.3e-06 Score=75.97 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=54.1
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC-CCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD-WGKNSM 220 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~-~g~HGg 220 (221)
+.+|+++|+..+|.+||.. +.+++.++|+++|+.|+++++.+++ +++++|||+|||-.. ...|.+
T Consensus 293 ~~Dfv~vh~~~~D~~GH~g--d~~~k~~aiE~iD~~l~~il~~l~~-----~~~~liITaDHgtp~~~~~HT~ 358 (412)
T PRK04024 293 EYDFVLLNIKGTDEAGHDG--DFEGKVEVIEKIDKMLGYILDNLDL-----DEVYIAVTGDHSTPVEVKDHSG 358 (412)
T ss_pred cCCEEEEeccCcchhhcCC--CHHHHHHHHHHHHHHHHHHHHHhhc-----CCCEEEEecCCCCCcccccCCC
Confidence 5799999999999999976 5578999999999999999999853 457999999999732 345543
No 34
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=98.09 E-value=7e-05 Score=68.84 Aligned_cols=169 Identities=18% Similarity=0.249 Sum_probs=95.1
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccc---cc---c-
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSA---IF---K- 115 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hg---i~---~- 115 (221)
+.+|+|+=...|+|.+.-++ .....+|.|+++-+ +=+.+. ..|+-| .|..+.-+|++=.. .++. .. .
T Consensus 232 ~~~VLVIGESaR~~n~~L~G-Y~R~TtP~L~~~~~--~~~~f~~~~Scgt-~Ta~Slpcmfs~~~-r~~~~~~~~~~~~N 306 (555)
T COG2194 232 RTVVLVIGESARRDNMSLYG-YPRETTPFLAKLRG--PLTVFFNAYSCGT-ATALSLPCMFSRDP-RENYSEQKALHQDN 306 (555)
T ss_pred cEEEEEEechhhHhhccccC-CCCCCChhHHhccC--Cceeecccccccc-ceeeeehhhcccCc-hhcccccccccccc
Confidence 33677888899999986555 34678999998754 334555 555554 47777777777542 2221 10 0
Q ss_pred ------------CCCCCCCc--ccc---hhh-cccee-----Eeec----chhhh----hhcC---CCCeEEEEEecCCC
Q psy4034 116 ------------GWQDNPVE--FDH---IFN-QSEFS-----VAFG----SPDVL----KMFT---RDKVIFLLHFLGPD 161 (221)
Q Consensus 116 ------------n~~~~p~~--~d~---i~~-~~~~~-----~~~~----~~~~~----~~~~---~~~~~~~~~~~~~D 161 (221)
-|..+-.. ... .++ +.+.. .+-+ ++... +... .++.++.+|..+-.
T Consensus 307 l~dilkrAG~~t~W~~nq~~~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~De~LL~~~~~~l~~~~~~~~~IVLH~~GSH 386 (555)
T COG2194 307 LLDLLKRAGYKTFWISNQTGCKGVTDRIPIANRADENYFLKGYCNGGNCYDEALLPDLDQVLAQELSQKKLIVLHLMGSH 386 (555)
T ss_pred HHHHHHHcCCeEEeeccCcccccchhhchhhhhhhhhccccccccCcccchHHHhHhHHHHhhccCCCCeEEEEEccCCC
Confidence 11111100 000 000 00000 0000 11111 1111 14579999987643
Q ss_pred cc--------CCCCCCCC--------------HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC--CCC-
Q psy4034 162 TA--------GHNFKPHS--------------KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT--DWG- 216 (221)
Q Consensus 162 ~~--------~H~~g~~s--------------~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~--~~g- 216 (221)
.. --++-|.. ..|.+.+.+.|..|.++++.|+++. +++.+|.+||||++ +.|
T Consensus 387 p~Y~~Ryp~~~~kF~p~c~~~~~~~c~~~~lvN~YDNtilYtD~~L~~vi~~Lk~~~---~~~~liY~SDHGEslgEn~~ 463 (555)
T COG2194 387 PNYYDRYPKEFAKFTPTCDTNDISSCSQEQLVNCYDNTILYTDYFLSKLIDQLKDKK---DNTSLIYFSDHGESLGENGP 463 (555)
T ss_pred ccHhhhCCHHHhccCCCCCccccccCcHHHHHHhhhchhhhhHHHHHHHHHHHHhCC---CCeEEEEEcCccHhhccCCc
Confidence 10 01222221 1388999999999999999999976 59999999999984 223
Q ss_pred -CCCC
Q psy4034 217 -KNSM 220 (221)
Q Consensus 217 -~HGg 220 (221)
.||+
T Consensus 464 ylhg~ 468 (555)
T COG2194 464 YLHGT 468 (555)
T ss_pred ccccC
Confidence 4665
No 35
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=98.04 E-value=1.5e-05 Score=70.57 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=54.4
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC-CCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD-WGKNSM 220 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~-~g~HGg 220 (221)
+.+|+++|+..+|.+||.. +.+++.++++++|+.+.++++.+++ ++.++|||+|||-.. ...|.+
T Consensus 287 ~yDfv~v~~~~~D~aGH~g--d~~~k~~aIE~iD~~l~~~l~~l~~-----~~~~liiTaDHgtp~~~~~Ht~ 352 (396)
T TIGR00306 287 EYDFVLVHTKGPDEAGHDG--DPELKVRAIEKIDSKIVGPLLALDL-----DETRLILTADHSTPVEVKDHSA 352 (396)
T ss_pred cCCEEEEEecCCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHhhh-----CCCEEEEeCCCCCCCCCCCCCC
Confidence 4679999999999999975 7788999999999999999988853 457999999999642 456654
No 36
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=97.78 E-value=6.3e-05 Score=66.61 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHhhccCCCCcEEEEEEcCCCCCC-CCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGI-VKAMVHTLSSYYNHDNKTAFIYSSDHGMTD-WGKN 218 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~-i~~ll~~l~~~g~~~~~t~viitSDHG~~~-~g~H 218 (221)
+.+|+++|+..+|.+||.. +.++..++++.+|+. ++.+++.+++.+ ++.+++||||||-.. ...|
T Consensus 284 ~~Dfv~vh~~~~D~aGH~g--d~~~kv~aIE~lD~~~~~~ll~al~~~~---~~~~~~vt~DH~tp~~~~~H 350 (396)
T TIGR02535 284 TYDFVVVHVEAPDEAGHEG--DLEAKIKAIELIDSRIVGPLLEALSDRD---EPFRILVLPDHPTPLELKTH 350 (396)
T ss_pred hCCEEEEEeCCCChhhccC--CHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEEEeeeCccCCCCCcc
Confidence 4679999999999999954 667788999999997 558999996543 456999999999532 3444
No 37
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.69 E-value=9e-05 Score=65.62 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=48.9
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHhhccCCCCcEEEEEEcCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGI-VKAMVHTLSSYYNHDNKTAFIYSSDHGM 212 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~-i~~ll~~l~~~g~~~~~t~viitSDHG~ 212 (221)
+.+|+++|+..+|.+||.. +.++..++|+.+|+. ++.+++.+++ .++.+++||||||-
T Consensus 283 ~~DfV~vh~~~~D~aGH~g--d~~~kv~aiE~lD~~~~~~ll~al~~----~~~~~l~it~DH~t 341 (395)
T PRK04200 283 THDFVFVHVEAPDEAGHEG--DLEAKIKAIEDIDERVVGPILEALKK----YEDYRILVLPDHPT 341 (395)
T ss_pred cCCEEEEEecCcchhhccC--CHHHHHHHHHHHHHHhHHHHHHHHHh----cCCCEEEEeccCCc
Confidence 5789999999999999954 567788999999998 5589999964 14568999999995
No 38
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.00014 Score=64.63 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=51.3
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
+.|++.+.|..+|-+||.- .-+...++++.+|..|+++++.+++.| ..++||+|||-.+
T Consensus 388 ~~D~iV~N~ANpDMVGHTG--~~eatiKAvEavD~~lg~ivd~~~~~g-----g~~~iTaDHGNaE 446 (509)
T COG0696 388 KYDLIVLNYANPDMVGHTG--NFEATIKAVEAVDECLGRIVDAVKKNG-----GTLLITADHGNAE 446 (509)
T ss_pred CCCEEEEecCCCccCcccc--cHHHHHHHHHHHHHHHHHHHHHHHhcC-----CeEEEeecCcchh
Confidence 4699999999999999964 345677999999999999999998766 8899999999653
No 39
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00019 Score=61.91 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=50.4
Q ss_pred CeEEEEEecCCC-ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCC
Q psy4034 150 KVIFLLHFLGPD-TAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDW 215 (221)
Q Consensus 150 ~~~~~~~~~~~D-~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~ 215 (221)
..++|..+.+.| ..||+- +-.-|.++++..|+.|.++++.|+ ++-++|||+|||-.+.
T Consensus 281 ~~~vFtNlVdfD~~yGHRr--Dv~gYa~aLe~FD~rL~e~~~~l~------edDlLiiTADHGnDPT 339 (397)
T COG1015 281 NGLVFTNLVDFDSLYGHRR--DVAGYAAALEEFDRRLPELIENLR------EDDLLIITADHGNDPT 339 (397)
T ss_pred CcEEEEeeeeccccccccc--chHHHHHHHHHHHHHHHHHHHhcC------CCCEEEEecCCCCCCC
Confidence 469999999999 789985 556699999999999999999974 6778999999998763
No 40
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.50 E-value=0.0002 Score=63.06 Aligned_cols=60 Identities=23% Similarity=0.363 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC-CCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD-WGKN 218 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~-~g~H 218 (221)
+.||+++|+..+|..||.. +.++-.++|+++|+.|..|+ .+ +++.|+|||||+-.. .+.|
T Consensus 279 ~~DfV~vhvk~~DeaGH~g--d~~~Kv~~IE~iD~~l~~ll-~l-------~~~~ivVT~DH~TP~~~~~H 339 (395)
T PRK04135 279 DYDFFFLHVKKTDSYGEDG--NFEEKVKVIEEVDALLPEIL-AL-------KPDVLVITGDHSTPAVLKGH 339 (395)
T ss_pred cCCEEEEEeccCchhhccC--CHHHHHHHHHHHHHHHHHHh-cC-------CCcEEEEeCCCCCccccccc
Confidence 5789999999999999965 45667789999999999888 54 234899999999643 3444
No 41
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0005 Score=59.55 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=51.3
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC-CCCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT-DWGKNSM 220 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~-~~g~HGg 220 (221)
+.||+|+|+..+|++||.- +-+.=..+|+.+|+.++.+++ + ..++..|+||+||-.. .+..|-|
T Consensus 296 ~yDfv~vhik~tDeagHdG--~~e~Kv~~IE~iD~~i~pll~-~-----~~~~~~i~vt~DHsTPv~vk~Hs~ 360 (408)
T COG3635 296 EYDFVFVHIKATDEAGHDG--DFEGKVRVIEDIDKAIGPLLD-L-----DLDEDVIAVTGDHSTPVSVKDHSG 360 (408)
T ss_pred hCCEEEEEeccCccccCCC--CHHHhHHHHHHHHHHhhhhhc-c-----ccCCcEEEEeCCCCCcccccccCC
Confidence 5799999999999999964 334556899999999999998 4 3688999999999752 3455543
No 42
>KOG4513|consensus
Probab=97.27 E-value=0.00073 Score=58.45 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=50.9
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
+-+++.+.+..+|-+||.- +-+....+++..|..|++|++++++.+ .+++||+|||-.+
T Consensus 404 ~~p~v~vNlappDMVGHTG--~~EAtv~AcEatD~aig~Iy~A~~~~~-----y~lvvTADHGNAE 462 (531)
T KOG4513|consen 404 KFPQVRVNLAPPDMVGHTG--DIEATVVACEATDEAIGKIYDAIEQVG-----YILVVTADHGNAE 462 (531)
T ss_pred CCCeEEEcCCCccccCccc--chhhhhhHHHHHHHHHHHHHHHHHhcC-----cEEEEEcCCCCHH
Confidence 3468889999999999964 456677899999999999999999877 9999999999653
No 43
>PRK10518 alkaline phosphatase; Provisional
Probab=96.95 E-value=0.0025 Score=57.51 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=47.0
Q ss_pred eEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 151 VIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 151 ~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
-|++|-=..+|+.+|.. +......+..++|+.|+..++..++. ++|+||||+||++.-
T Consensus 344 FFLmVEGg~ID~a~H~n--da~~~i~E~~~fD~AV~~A~~~~~~~----~dTLVIVTADH~h~~ 401 (476)
T PRK10518 344 FFLQVEGASIDKQDHAA--NPCGQIGETVDLDEAVQKALEFARKD----GNTLVIVTADHAHSS 401 (476)
T ss_pred eEEEeeccccchhhccC--CHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEEEEccCCCcc
Confidence 45555667899999975 34556788999999999999999853 589999999999863
No 44
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=96.82 E-value=0.0039 Score=55.59 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=47.6
Q ss_pred CeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 150 KVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 150 ~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.-|++|-=..+|+.+|.. +.......+..+|+.|+..++..++ .++|+||||+||+..
T Consensus 253 GFfLmVEgg~ID~a~H~n--d~~~~i~E~~~fd~AV~~a~~~~~~----~~dTLiiVTADH~~g 310 (419)
T smart00098 253 GFFLMVEGGRIDHAHHEN--DACGALHETVDFDQAIQAALEFAKK----EDETLVIVTADHSHV 310 (419)
T ss_pred ceEEEEecccCChhhccC--CHHHHHHHHHHHHHHHHHHHHHhhC----CCCcEEEEEecCCCc
Confidence 345666667899999975 4456778899999999999999975 479999999999865
No 45
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=96.37 E-value=0.0037 Score=56.45 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcC-CCC
Q psy4034 177 NIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSD-HGM 212 (221)
Q Consensus 177 ~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSD-HG~ 212 (221)
.+...|+.|+++++.|++.+ .++||+||||+| ||-
T Consensus 364 ~v~~gD~~vg~vl~aL~~~p-~w~NTlII~T~DENGG 399 (483)
T TIGR03397 364 DVAAGDRHIADVIAHLQKSP-QWKNMVVIVTYDENGG 399 (483)
T ss_pred CHHHHHHHHHHHHHHHHhCc-cccCcEEEEEEECCCC
Confidence 48999999999999999999 899999999999 883
No 46
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=96.34 E-value=0.0037 Score=55.94 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=47.3
Q ss_pred CeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 150 KVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 150 ~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.-|++|-=..+|..+|.. +.......+..+|+.|+..++..++ .++|+||||+||+..
T Consensus 256 GFfLmVEg~~ID~a~H~n--d~~~~i~E~~~fD~AV~~a~~~~~~----~~~TLiIVTADHetg 313 (421)
T PF00245_consen 256 GFFLMVEGGRIDWAGHAN--DAARAIEETLEFDDAVKVALDFAEK----DDDTLIIVTADHETG 313 (421)
T ss_dssp -EEEEEEETHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHH----CSSEEEEEEESSEES
T ss_pred CcEEEecccchhhhhhhc--hHHHHHHHHHHHHHHHHHHHHHhcc----CCCeEEEEEecccCc
Confidence 356666777899999975 3455778999999999999999984 479999999999876
No 47
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=96.08 E-value=0.0071 Score=57.11 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 172 KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 172 ~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
..|.+++++.|+.++++++.++++| ..++|++++++||.-..
T Consensus 454 ~~y~~~~~y~D~al~~F~~~lkk~~-~~~~sviv~~GDH~~~~ 495 (650)
T COG1368 454 ANYLQAVHYADEALGQFIDKLKKSG-LYKNSVIVLYGDHYGIS 495 (650)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCcc
Confidence 4588999999999999999999999 99999999999998654
No 48
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.031 Score=50.36 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=44.8
Q ss_pred eEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 151 VIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 151 ~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
-|++|-=..+|+.+|..-+ ..........|+.++..++..++. .+|+||+|+||=+.
T Consensus 300 FFLMVEGg~ID~a~Hand~--~~~i~e~~~fd~Avq~al~fA~k~----~~TLVIvTADH~tg 356 (482)
T COG1785 300 FFLMVEGGRIDWAGHANDP--AGAIGETVAFDEAVQAALDFAEKD----GNTLVIVTADHETG 356 (482)
T ss_pred eEEEEeccccchhhcCcCH--HHHHHHHHHHHHHHHHHHHHHhcC----CCeEEEEeccccCC
Confidence 3555556679999997533 345678899999999999999864 58999999999543
No 49
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=94.48 E-value=0.18 Score=44.58 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=51.4
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDW 215 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~ 215 (221)
.-.++++.+.+-|.-... .......+.++|+.|..+++.|+++| +.++|+|+++||=|.+..
T Consensus 245 g~~v~~V~~gGwDTH~~~----~~~~~~ll~~L~~alaaf~~dL~~~g-~~d~t~vv~~SEFGRt~~ 306 (392)
T PF07394_consen 245 GVRVVFVSLGGWDTHSNQ----GNRHARLLPELDQALAAFIQDLKERG-LLDDTLVVTMSEFGRTPR 306 (392)
T ss_pred CCEEEEECCCCccCcccc----HhHHHHHHHHHHHHHHHHHHHHHhcC-CcCceEEEEeeecCCCcc
Confidence 556788888887765432 23466788999999999999999999 999999999999998753
No 50
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=94.14 E-value=0.19 Score=44.30 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCccccccCCCC---CCCcccchhhccc---eeEee--
Q psy4034 67 SSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQD---NPVEFDHIFNQSE---FSVAF-- 137 (221)
Q Consensus 67 ~~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~hgi~~n~~~---~p~~~d~i~~~~~---~~~~~-- 137 (221)
...+|++.+||+ +.+.+. .++..+.-|.|++..+++|.......-...... .+....+++++.. -+|.+
T Consensus 120 ~~~~P~~~~LA~--~f~l~Dnyf~s~~~pS~PNr~~l~sG~~~~~~~~~~~~~~~~~~~~~~~ti~d~L~~aGisW~~Y~ 197 (376)
T PF04185_consen 120 PADLPFLWALAD--QFTLCDNYFCSVPGPSQPNRLYLISGTSDGVGNNGNPFIDNPSPPFSWPTIFDRLSAAGISWKWYQ 197 (376)
T ss_dssp TTTSHHHHHHHH--HSEEESSEE-SSSS-HHHHHHHHHHS---TT-STS-TTS-EEES------HHHHHHHHT--EEEEE
T ss_pred CCCChHHHHHHh--heEEecccccCCCCCCCCCceEEEeeccCccccCCCCceecCCCCcccccHHHHHHHcCCceEeCe
Confidence 478999999999 888887 556788889999999999987322110000000 1112233333210 01100
Q ss_pred --------------------cc------------------h---hhhhhcC-----CCCeEEEEEecCCCccCCCCCCCC
Q psy4034 138 --------------------GS------------------P---DVLKMFT-----RDKVIFLLHFLGPDTAGHNFKPHS 171 (221)
Q Consensus 138 --------------------~~------------------~---~~~~~~~-----~~~~~~~~~~~~~D~~~H~~g~~s 171 (221)
.. . ...+++. .-|.+.|+-.... .-+|...
T Consensus 198 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~d~~~g~LP~~sfI~p~~~-~d~Hp~~--- 273 (376)
T PF04185_consen 198 EGYPNPGDNGLAGFDPYFDYFYQPFNPPSFGSYSPNPDRANHIVPLSQFYADLANGTLPQVSFIEPNMC-NDMHPPY--- 273 (376)
T ss_dssp TT-S-SEEETTEEE---EEE-TTS-E--S-GGGTTSBSTTTTEEECHHHHHHHHTT---SEEEEE--GG-GS--TTT---
T ss_pred ecCCccCcccccccccchhhhhcccccccccccccccccccccchHHHHHHHHHcCCCCceEEEEecCc-CCCCCCC---
Confidence 00 0 0001111 1366777665221 2234221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCC
Q psy4034 172 KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211 (221)
Q Consensus 172 ~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG 211 (221)
..++.-|..|++++++|.+.. .+++|+||||=|-+
T Consensus 274 ----~~~~~gd~~l~~vv~ai~~sp-~W~~T~iiIt~DE~ 308 (376)
T PF04185_consen 274 ----SVIADGDAFLARVVEAIRNSP-YWKNTAIIITYDEN 308 (376)
T ss_dssp ------HHHHHHHHHHHHHHHHCST-TGGGEEEEEEES--
T ss_pred ----CchhHHHHHHHHHHHHHhcCc-CcCCeEEEEEEecC
Confidence 246889999999999999999 79999999997754
No 51
>KOG4126|consensus
Probab=93.74 E-value=0.17 Score=45.75 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.4
Q ss_pred eEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 151 VIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 151 ~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
-|+||-=.-+|+..|.- .....+....+.|+.|+.-.+..+ .++|++|+||||.+.
T Consensus 345 ffLfVEGgrID~ghH~~--~a~~aL~Et~ef~~Aiq~a~~~t~-----~~dTLivvTaDHsh~ 400 (529)
T KOG4126|consen 345 FFLFVEGGRIDHGHHET--DARQALDETLEFDKAIQRALELTS-----EEDTLIVVTADHSHT 400 (529)
T ss_pred eEEEEeccccccccccc--HHHHHHHHHHHHHHHHHHHHHhcC-----ccCCEEEEecccccc
Confidence 35555555688877753 233456677778888888877774 578999999999875
No 52
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=93.68 E-value=0.11 Score=46.03 Aligned_cols=60 Identities=17% Similarity=0.367 Sum_probs=41.6
Q ss_pred CCCCcEEEEEEcCCCchhhcccccC---CCCCChHHHHHHhhCCcceeeeeecC---Ccccccchhhhc
Q psy4034 41 QLAKRVVIFFADGVRSEKFYEVTDR---NSSHSPYIRTLLANNEACGGIAHTQV---PTETRPGAIAML 103 (221)
Q Consensus 41 ~~~~~vvlI~vDgl~~d~l~~~~~~---~~~~~P~l~~l~~~~~g~~~~~~s~~---Pt~T~p~~~si~ 103 (221)
.+.+|+|+|++||+.-.-+.+ ... ...++|||++|++ +|+.+-+.+.. |.-|-.++.||+
T Consensus 5 ~~~~K~v~ii~DGmgD~p~~e-~gkTPLe~A~tPnlD~lA~--~G~~Gl~~~v~~G~~pGSD~a~lsll 70 (395)
T PRK04135 5 KNDSKIVLLVLDGLGGLPHPE-NGKTELEAAKTPNLDALAK--ESDLGLLIPVLPGITPGSGPGHLGLF 70 (395)
T ss_pred cCCCcEEEEEecCCCCCCCCC-CCCChhhccCCCChHHHHH--cCCcccceeeCCCCCCCcHHHhhhhh
Confidence 456789999999999766543 211 2367999999999 88887655544 444555666654
No 53
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=92.82 E-value=0.11 Score=45.41 Aligned_cols=59 Identities=12% Similarity=0.327 Sum_probs=41.5
Q ss_pred CCcEEEEEEcCCCchhhccccc---CCCCCChHHHHHHhhCCcceeeeee---cCCcccccchhhhc
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTD---RNSSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAML 103 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~---~~~~~~P~l~~l~~~~~g~~~~~~s---~~Pt~T~p~~~si~ 103 (221)
..|+++|++||+.-.-+..... -....+||+++|++ +|.+.-+.+ ..++-|-+++.||+
T Consensus 3 ~~killiv~DGlgDrP~~~l~gkTpLq~A~tPNmD~LA~--~g~~Gl~~~i~pGi~pGSd~ahLsl~ 67 (408)
T COG3635 3 KMKILLIVLDGLGDRPVEELDGKTPLQAAKTPNMDRLAK--EGICGLMDPIKPGIRPGSDTAHLSLF 67 (408)
T ss_pred cceEEEEEecCCCCCcccccCCCCchhhcCCCCHHHHHh--cCCcccccccCCCCCCCCCcceeeee
Confidence 4689999999998665544210 12367999999999 888876554 44555677777765
No 54
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=92.63 E-value=0.17 Score=45.05 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=39.4
Q ss_pred cEEEEEEcCCCchhhccccc---CCCCCChHHHHHHhhCCcceeeeeecCC---cccccchhhhc
Q psy4034 45 RVVIFFADGVRSEKFYEVTD---RNSSHSPYIRTLLANNEACGGIAHTQVP---TETRPGAIAML 103 (221)
Q Consensus 45 ~vvlI~vDgl~~d~l~~~~~---~~~~~~P~l~~l~~~~~g~~~~~~s~~P---t~T~p~~~si~ 103 (221)
|+|+|++||+.-.-+..... -...++|||++|++ +|..+-+.++.| .-|-+++.||+
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~--~g~~Gl~~~v~~g~~pgSd~a~lsl~ 64 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAK--RGRCGLLRTVPEGFPPGSDVANMSLL 64 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHh--cCCCcceeecCCCCCCCcHHHHHHhh
Confidence 78999999999766533221 12367999999999 898886555444 44555666654
No 55
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=92.35 E-value=0.17 Score=44.94 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=39.2
Q ss_pred cEEEEEEcCCCchhhccccc---CCCCCChHHHHHHhhCCcceeeeeecC---Ccccccchhhhc
Q psy4034 45 RVVIFFADGVRSEKFYEVTD---RNSSHSPYIRTLLANNEACGGIAHTQV---PTETRPGAIAML 103 (221)
Q Consensus 45 ~vvlI~vDgl~~d~l~~~~~---~~~~~~P~l~~l~~~~~g~~~~~~s~~---Pt~T~p~~~si~ 103 (221)
|+|+|++||+.-.-+..... -...++|||++|++ +|..+-+.++. |.-|-+++.||+
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~--~g~~Gl~~~v~~g~~pgSd~a~lsl~ 64 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAR--EGRVGLAKTVPEGFPPGSDVANMSIL 64 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHh--cCCcccceecCCCCCCCcHHHHHHhh
Confidence 68999999999765433221 12367999999999 89888655544 444555666654
No 56
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=91.76 E-value=0.23 Score=44.41 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCchhhccccc---CCCCCChHHHHHHhhCCcceeeeee---cCCcccccchhhhc
Q psy4034 45 RVVIFFADGVRSEKFYEVTD---RNSSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAML 103 (221)
Q Consensus 45 ~vvlI~vDgl~~d~l~~~~~---~~~~~~P~l~~l~~~~~g~~~~~~s---~~Pt~T~p~~~si~ 103 (221)
|+|+|++||+.-.-+..... -...++|||++|++ +|+.+-+.+ .+|.-|-+++.||+
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~--~g~~Gl~~~v~~G~~pgSd~a~lsl~ 66 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAK--EGICGLMDPISPGVRPGSDTAHLAIL 66 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHH--cCCcccceeeCCCCCCCcHHHHhhhh
Confidence 89999999999766543221 12367999999999 888876444 44555666777665
No 57
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=88.26 E-value=0.65 Score=41.35 Aligned_cols=55 Identities=18% Similarity=0.368 Sum_probs=37.9
Q ss_pred EEEEEcCCCchhhccccc---CCCCCChHHHHHHhhCCcceeeeeec---CCcccccchhhhc
Q psy4034 47 VIFFADGVRSEKFYEVTD---RNSSHSPYIRTLLANNEACGGIAHTQ---VPTETRPGAIAML 103 (221)
Q Consensus 47 vlI~vDgl~~d~l~~~~~---~~~~~~P~l~~l~~~~~g~~~~~~s~---~Pt~T~p~~~si~ 103 (221)
|+|++||+.-.-+..... -...++|||++|++ +|+.+-+.++ +|.-|-+++.||+
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~--~g~~Gl~~~v~~G~~pgSd~a~l~ll 61 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAE--EGICGLMRTIKEGIRPGSDTAHLSIL 61 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHh--cCCeeeeeeeCCCCCCCchhhhhhhc
Confidence 589999998766533221 12367999999999 8998875554 4455666666665
No 58
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=86.53 E-value=7.7 Score=32.65 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=39.6
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDH 210 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDH 210 (221)
++.++.+.++.....+ ++-.++++.-|..|+++++.+.+. . +.++|+||+.
T Consensus 127 ~~~vi~V~l~~l~~~~-------~~R~~~L~~nD~~l~~vl~~l~s~---~-~ytvIyts~~ 177 (282)
T PF05827_consen 127 KPRVIRVDLPPLPSSS-------ESRKEALSDNDEFLRKVLSKLPSP---D-PYTVIYTSTP 177 (282)
T ss_pred CCcEEEEECCCCCCcc-------ccchhhhhhhhHHHHHHHHhcCCC---C-cEEEEEEccC
Confidence 5789999887765432 334589999999999999999642 1 5889999987
No 59
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=76.49 E-value=1.4 Score=36.59 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=24.5
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHh
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~ 78 (221)
+|+|+|++||++-........-....+|+|++|++
T Consensus 1 mr~ilivlDG~G~g~~~~~t~l~~a~tptld~la~ 35 (252)
T PF01676_consen 1 MRVILIVLDGLGDGPMPDATPLEDAGTPTLDHLAA 35 (252)
T ss_dssp SEEEEEEETTBC-SCBTTTGHHHHSTEHHHHHHHH
T ss_pred CcEEEEEeccCCCCCCCCcChHhhcCCcHHHHHHH
Confidence 58999999999876543211112367999999998
No 60
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=75.39 E-value=51 Score=30.36 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=88.2
Q ss_pred EEEEEEcCCCchhhcccccCCCCCChHHHHHHhhCCcceeeeeecCCcccccchhhhcccCC--CCcccccc--------
Q psy4034 46 VVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFY--EDPSAIFK-------- 115 (221)
Q Consensus 46 vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~~g~~~~~~s~~Pt~T~p~~~si~TG~~--p~~hgi~~-------- 115 (221)
|++|-+=.++||.++..+ ..+.|.++++= +.|+.+.+..+.|.|+-.=++.+.- |..+.++.
T Consensus 198 llvlnICSLsWdDl~a~g---l~~hPl~~~FD-----i~F~nFNSAtSYSGPAaIRLLRASCGQ~sH~~Ly~pa~~qC~L 269 (518)
T PF11658_consen 198 LLVLNICSLSWDDLDAAG---LRNHPLWKRFD-----IVFDNFNSATSYSGPAAIRLLRASCGQPSHSDLYQPAPQQCYL 269 (518)
T ss_pred EEEEEecccchhhHHHhC---CccCchHHhhc-----chhcccccccccchHHHHHHHHhccCCcchHhhcCCCcccccH
Confidence 899999999999998865 36788888872 2455555566667777666655432 11122221
Q ss_pred --CCC---------CC-CCcccchhhccce-----------------eEee-cch-----hh-hhhcCC------CCeEE
Q psy4034 116 --GWQ---------DN-PVEFDHIFNQSEF-----------------SVAF-GSP-----DV-LKMFTR------DKVIF 153 (221)
Q Consensus 116 --n~~---------~~-p~~~d~i~~~~~~-----------------~~~~-~~~-----~~-~~~~~~------~~~~~ 153 (221)
|.. .+ .-.||.+.+..+. ...| |+| +. ..|+.+ .+...
T Consensus 270 F~nLa~lGf~~~l~mnHdG~Fd~Fl~~ir~~G~l~~pl~s~~g~~~~~~~FDgSpI~~D~~vL~rW~~~r~~~~~~~~A~ 349 (518)
T PF11658_consen 270 FDNLAKLGFTQQLMMNHDGHFDNFLQEIREDGGLQAPLMSQAGLPVALHSFDGSPIYDDLAVLNRWLQQREKSDDGRVAT 349 (518)
T ss_pred HHHHHhcCCchhhccCCCCccccHHHHHHHcCCCCCCCcCCCCCchHhhccCCCcccchHHHHHHHHHHHhhcCCCceEE
Confidence 110 00 0123433221110 0111 222 11 123321 23333
Q ss_pred EEEecCCCc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 154 LLHFLGPDT----AGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 154 ~~~~~~~D~----~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
|........ ++..-....+.|....+++=..+.++++.|++.| .+.+||++=.||-.
T Consensus 350 ~YNtIsLHDGNr~~~~~~~~s~~sY~~Ra~~Llddl~~F~~~Le~Sg---R~v~vv~VPEHGAA 410 (518)
T PF11658_consen 350 FYNTISLHDGNRLPGSDRLNSLASYKPRAQKLLDDLDRFFDELEKSG---RKVMVVVVPEHGAA 410 (518)
T ss_pred EEeeeecccCCccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHcC---CcEEEEEecCcccc
Confidence 332222211 1221222345688888888889999999999998 99999999999954
No 61
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=74.95 E-value=3.1 Score=37.74 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=40.6
Q ss_pred CCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHhhC-Ccceee--eeecCCc----ccccchhhhcccC
Q psy4034 42 LAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANN-EACGGI--AHTQVPT----ETRPGAIAMLAGF 106 (221)
Q Consensus 42 ~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~~~-~g~~~~--~~s~~Pt----~T~p~~~si~TG~ 106 (221)
..+++++|++||+++..-....+-....+|++++|.++- ...... .....|. -|-.+|..|-+|+
T Consensus 2 ~~k~~~LiIlDG~G~~~~~~~NAv~~A~tP~~d~l~~~~P~~~l~aSG~~VGLP~GQmGNSEVGHlnIGAGR 73 (509)
T COG0696 2 MKKPVVLIILDGWGYREETEGNAVALAKTPTMDALLNNYPHTLLKASGLAVGLPEGQMGNSEVGHLNIGAGR 73 (509)
T ss_pred CCCcEEEEEecCCCCCcccccCHHHhcCCchHHHHHHhCCchhhhccccccCCCCCcccCccccceeeecce
Confidence 357899999999999764433323457899999999821 111111 1112331 3667788888884
No 62
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=74.38 E-value=3 Score=38.62 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHh
Q psy4034 42 LAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (221)
Q Consensus 42 ~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~ 78 (221)
..++++||++||++...-....+-...+||++++|.+
T Consensus 19 ~~~pv~LiILDGwG~~~~~~~NAi~~A~tP~~D~l~~ 55 (558)
T PLN02538 19 KGKPLLLIVLDGWGENAPDEFNAIHVAPTPTMDSLKA 55 (558)
T ss_pred CCCCEEEEEecCCCCCCCCCCCHhhhcCCCCHHHHHH
Confidence 3468999999999975443322234578999999998
No 63
>COG4102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.83 E-value=13 Score=32.44 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=41.8
Q ss_pred CCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
++.+.++.+...|+...+.+. .. .-+++++..++.+-....+.|..+++|+|+..||-|.+.
T Consensus 267 gp~vaalsl~gfDTH~nq~~a-q~---~La~ql~~~da~l~a~~t~lG~~w~dt~i~t~tEFgRta 328 (418)
T COG4102 267 GPQVAALSLGGFDTHANQNDA-QG---RLATQLGGLDAALDAFETELGARWKDTVIVTATEFGRTA 328 (418)
T ss_pred CceEEEEeecCccccccccch-hh---HHHHHhcchHHHHHHHHhhccccccceEEEEeeccccce
Confidence 788999999999975443221 22 344555555555555555555567999999999999874
No 64
>PRK05434 phosphoglyceromutase; Provisional
Probab=70.62 E-value=6.5 Score=36.22 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHh
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~ 78 (221)
.++++||++||++...-....+-...++|++++|.+
T Consensus 4 ~~~~~L~IlDG~G~~~~~~~nai~~A~tp~~d~l~~ 39 (507)
T PRK05434 4 KKPVVLIILDGWGYREETEGNAIALAKTPNLDRLWA 39 (507)
T ss_pred CCcEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHH
Confidence 567999999999875433322224578999999998
No 65
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=70.43 E-value=5.7 Score=36.51 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=25.6
Q ss_pred CcEEEEEEcCCCchhhcccccCCCCCChHHHHHHh
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~ 78 (221)
++++||++||++...-....+-...++|++++|.+
T Consensus 1 ~p~~L~IlDG~G~~~~~~~nai~~A~tP~~d~l~~ 35 (501)
T TIGR01307 1 KKVVLVILDGWGYRNDDDGNAIFAAKTPTMDELIA 35 (501)
T ss_pred CCEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHH
Confidence 47899999999875433222223578999999988
No 66
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=67.49 E-value=6.1 Score=30.66 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 179 EAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 179 ~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+..|.+|.+++..+.+. ...+.||||||...
T Consensus 77 ~tAD~~Ie~~v~~~~~~----~~~v~VVTSD~~iq 107 (166)
T PF05991_consen 77 ETADDYIERLVRELKNR----PRQVTVVTSDREIQ 107 (166)
T ss_pred CCHHHHHHHHHHHhccC----CCeEEEEeCCHHHH
Confidence 46899999999998643 36889999999643
No 67
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=64.06 E-value=21 Score=29.36 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC--CCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT--DWGKNS 219 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~--~~g~HG 219 (221)
+.+.+.-..++++++..+ ++..+|+.+|||++ +.|..|
T Consensus 144 ~~l~~Fg~~l~~~le~~~------~ki~lIiSaD~aHth~edGPYG 183 (261)
T COG3885 144 EILVKFGDNLGKALEEYE------RKISLIISADHAHTHDEDGPYG 183 (261)
T ss_pred HHHHHHHHHHHHHHHHhh------cceEEEEecccccccCCCCCCC
Confidence 677888888888888875 56899999999986 355544
No 68
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=61.41 E-value=20 Score=32.84 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 171 SKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 171 s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.+.|....+++=..+.++++.|++.| .+.+|+++=.||-.
T Consensus 368 ~~sY~~Ra~kLlddld~F~~~le~Sg---R~vvVv~VPEHGAA 407 (518)
T TIGR03368 368 LASYPLRAKKLLDDLDRFFDELEKSG---RKVVVVLVPEHGAA 407 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcC---CcEEEEEecCcchh
Confidence 45688889999999999999999988 99999999999954
No 69
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=56.81 E-value=20 Score=30.45 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+..+.+.+.+.++-+.+++. ..+++|||.+||+..
T Consensus 28 ~~~~~~~~a~~~i~~~i~~~---~PDvvVii~~dH~~~ 62 (284)
T PRK13366 28 PYWQPVFKGYEFSKQWEKEE---KPDVIFLVYNDHATA 62 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCEEEEEcCCcHHh
Confidence 45667777778888888764 488999999999743
No 70
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=54.96 E-value=34 Score=23.42 Aligned_cols=20 Identities=25% Similarity=0.364 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy4034 3 VFIVLFFIHVLFFLSIFEIY 22 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (221)
.||++|+..+++++.|+..-
T Consensus 41 ~FWv~LA~FV~~lF~iL~~m 60 (90)
T PF15183_consen 41 AFWVSLAAFVVFLFLILLYM 60 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999998744
No 71
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=54.75 E-value=19 Score=30.55 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 178 IEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 178 i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.+++.+.+.++-+.+++. ..+++|||++||+..
T Consensus 30 ~~~v~~a~~~~~~~v~~~---~PDvvVvis~dH~~~ 62 (278)
T PRK13364 30 WKPFFDGFPPVREWLEKV---KPDVAVVFYNDHGLN 62 (278)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCEEEEECCchHhh
Confidence 556777778888888774 488999999899865
No 72
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=51.22 E-value=9.6 Score=34.25 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=39.4
Q ss_pred CcEEEEEEcCCCchhhcccccCCC--------CCChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCCc
Q psy4034 44 KRVVIFFADGVRSEKFYEVTDRNS--------SHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDP 110 (221)
Q Consensus 44 ~~vvlI~vDgl~~d~l~~~~~~~~--------~~~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~~ 110 (221)
+|||+++-||++...+..+..... .....++++-. .|+.-+ .....-+-|+++-+++.||.....
T Consensus 1 KNVIl~IgDGMg~~~~taaR~~~~~~~~~~~~~~~l~~d~~p~--~~l~~T~~~d~~vtDSAa~aTA~atG~KT~n 74 (419)
T smart00098 1 KNVILFIGDGMGVSTITAARILKGQAGGKLGEETLLAFDQFPT--GALSKTYNPDYQVTDSAATATAYLCGVKTYN 74 (419)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHhcccCCCCccccccchhhcce--eeeeccCCCCCCCCcchhhheehhhcccccC
Confidence 689999999999987744311000 11344555554 343323 222334568899999999986543
No 73
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=49.74 E-value=26 Score=29.64 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 178 IEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 178 i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.+.+.+.+.++-+.+++. ..+++||+++||+..
T Consensus 30 ~~~~~~a~~~~~~~i~~~---~PD~iVvi~~dH~~~ 62 (277)
T cd07950 30 WAPIFDGYEPVKQWLAEQ---KPDVLFMVYNDHVTS 62 (277)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHH
Confidence 456666777777777764 488999999999864
No 74
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=47.55 E-value=34 Score=29.74 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~ 212 (221)
+..+.+-+.+.++-+.+++. ..+++|||.+||+.
T Consensus 26 ~~~~~~~~a~~~l~~~v~~~---~PD~iVV~~sdH~~ 59 (329)
T cd07369 26 DVRARTEEATLKLGRTLTAA---RPDVIIAFLDDHFE 59 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCEEEEEcCCchh
Confidence 45667777777778888764 48899999999986
No 75
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=46.54 E-value=34 Score=28.94 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
..-+.+.+.+.++-+.+++. ..+|+|||.+||...
T Consensus 28 ~~~~~~~~a~~~~~~~~~~~---~pD~vVvi~~dH~~~ 62 (277)
T cd07364 28 PYWKPLFKGYQPARDWIKKN---KPDVAIIVYNDHASA 62 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCEEEEEcCchHHh
Confidence 34556666677777777764 488999999999753
No 76
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=45.06 E-value=27 Score=29.54 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=11.3
Q ss_pred CCCcEEEEEEcCCCCC
Q psy4034 198 HDNKTAFIYSSDHGMT 213 (221)
Q Consensus 198 ~~~~t~viitSDHG~~ 213 (221)
..+..+|+||||+|+.
T Consensus 73 ~~~~~~ivitSDrGLC 88 (290)
T PF00231_consen 73 VKKVLLIVITSDRGLC 88 (290)
T ss_dssp -SCEEEEEE--STSSS
T ss_pred cceEEEEEEecCcccc
Confidence 4678899999999986
No 77
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=44.62 E-value=29 Score=29.31 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 178 IEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 178 i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
-+.+-+.+.++-+.+++. ..+++|||++||+..
T Consensus 30 ~~~~~~a~~~~~~~v~~~---~PD~iVvis~dH~~~ 62 (276)
T cd07949 30 WKPFFDGFPPVHDWLEKA---KPDVAVVFYNDHGLN 62 (276)
T ss_pred HHHHHHHHHHHHHHHHHc---CCCEEEEECCcHHhh
Confidence 445556666677777664 478988888899643
No 78
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=43.44 E-value=32 Score=29.08 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 178 IEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 178 i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.+.+.+.+.++-+.+++. ..+++|||.|||+..
T Consensus 30 ~~~~~~a~~~i~~~v~~~---~PDviVvi~sdH~~~ 62 (279)
T PRK13365 30 WKPLFDGYEPVAAWLAEQ---KADVLVFFYNDHCTT 62 (279)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCEEEEEcCchHHH
Confidence 356666677777777764 488999999999853
No 79
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=43.03 E-value=44 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+.++.+-+.+.++-+.+++. ..+++|||++||+..
T Consensus 22 ~~~~~~~~al~~~~~~l~~~---~Pd~ivvis~dH~~~ 56 (268)
T cd07367 22 DQAARVVQGMAEIGRRVRES---RPDVLVVISSDHLFN 56 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHc---CCCEEEEEeCchhhh
Confidence 44556666666777677653 479999999999865
No 80
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=42.21 E-value=39 Score=28.50 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
+..+.+-+.+.++-+.+++. ..+++|||+.||....
T Consensus 26 ~~~~~~~~a~~~~~~~v~~~---~pD~ivvi~~dH~~~f 61 (277)
T cd07368 26 AQREICWHAYAICAERLAAL---QVTSVVVIGDDHYTLF 61 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCchHhhh
Confidence 45556667777888888765 4889999999998754
No 81
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=41.99 E-value=31 Score=29.96 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCC
Q psy4034 177 NIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212 (221)
Q Consensus 177 ~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~ 212 (221)
...++.+.+.++-+.+++. ..+++|||+.||..
T Consensus 67 ~~~~~~~a~~~~~~~i~~~---~PDvlVIispDH~~ 99 (328)
T cd07366 67 RYARCQAALDRLADFIRAA---RIDVAVIVGDDQKE 99 (328)
T ss_pred chHHHHHHHHHHHHHHHHh---CCCEEEEEcCccHh
Confidence 3444456667777777764 48999999999984
No 82
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=39.41 E-value=10 Score=34.05 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCCchhhccccc----CCCCC---ChHHHHHHhhCCcceee-eeecCCcccccchhhhcccCCCC
Q psy4034 43 AKRVVIFFADGVRSEKFYEVTD----RNSSH---SPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYED 109 (221)
Q Consensus 43 ~~~vvlI~vDgl~~d~l~~~~~----~~~~~---~P~l~~l~~~~~g~~~~-~~s~~Pt~T~p~~~si~TG~~p~ 109 (221)
+||||+++-||++...+..+.. ..... .=.+++|-- .|..-+ .....-+-|+++-+++.||....
T Consensus 1 AKNVI~~IgDGmg~~~~taar~~~~~~~~~~~~~~l~~d~~~~--~G~~~T~~~d~~vtDSAa~aTA~atG~Kt~ 73 (421)
T PF00245_consen 1 AKNVILFIGDGMGPSQVTAARIYKGGKNGRPGEEFLAMDKFPY--VGLVRTYSSDSQVTDSAAAATALATGVKTY 73 (421)
T ss_dssp -SEEEEEEETT-SHHHHHHHHHHHHHHTTSCTTTSCTGGGSSE--EEEEE--ESSSSS--HHHHHHHHHHSS--B
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHhhccCCcccccchhhhhhc--cceeecccCCcccCccCCcceEEeeeeeec
Confidence 4899999999999988854321 00000 012344332 344444 33345567889999999998754
No 83
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=37.84 E-value=33 Score=28.73 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=34.6
Q ss_pred hhccCCCCCCCCcccc-cc---ccCCCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHh
Q psy4034 21 IYFKSPIIDNIPVSVK-AQ---GIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (221)
Q Consensus 21 ~~~~~~~~~~~~~~~~-~~---~~~~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~ 78 (221)
-|.+-|++....++.. .. ..++...|.+|+.|||+...+.. ...|.|..|.+
T Consensus 83 ~YL~RPDLGR~L~~~s~~~L~~~~~~~~Dv~iViaDGLSa~Av~~------na~~~l~al~~ 138 (260)
T PRK05465 83 EYLTRPDLGRRLSDESREALKAQCGKNPDVQIVVADGLSALAVEA------NAEPLLPALLA 138 (260)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCCHHHHHH------hHHHHHHHHHH
Confidence 5777777755552221 11 12445679999999999999976 44677777664
No 84
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=37.48 E-value=1.2e+02 Score=26.87 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=48.4
Q ss_pred hhhcCCCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 143 LKMFTRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
.+.+.-+|+++-.+|...+.+.-..+ .. .......+|+.|.++-++.++.| ..++-.|||=+|.|.-
T Consensus 203 ~~~~~IDPWlInp~f~~c~~vdF~~~-~G--~e~lA~~Vd~~L~kir~KY~eYg-I~e~PfViVKADaGTY 269 (403)
T TIGR02049 203 AKLIGIDPWLINPYFEKCDGIDFDDR-EG--EDALATAVDQVLSKTQKKYEEYG-IHTQPYVIVKADAGTY 269 (403)
T ss_pred HHHhCCCcccccHhhhccCCcCCCcc-cc--HHHHHHHHHHHHHHHHHHHHHcC-CCCCCeEEEEcCCCCC
Confidence 34444478777666665555432222 12 23566789999999999999999 9999999999999853
No 85
>PRK10518 alkaline phosphatase; Provisional
Probab=36.89 E-value=25 Score=32.15 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=40.5
Q ss_pred cCCCCcEEEEEEcCCCchhhcccccCC---CCCChHHHHHHhhCCcceee-eee------cCCcccccchhhhcccCCCC
Q psy4034 40 IQLAKRVVIFFADGVRSEKFYEVTDRN---SSHSPYIRTLLANNEACGGI-AHT------QVPTETRPGAIAMLAGFYED 109 (221)
Q Consensus 40 ~~~~~~vvlI~vDgl~~d~l~~~~~~~---~~~~P~l~~l~~~~~g~~~~-~~s------~~Pt~T~p~~~si~TG~~p~ 109 (221)
..+.+|||+++-||++...+....... .+..+.+++|-- .|..-+ ... .+-+-|.++-+++.||....
T Consensus 66 ~~~aKNVIlfIGDGMg~s~itaaR~~~~g~~G~~~~~d~lp~--~g~~~Tys~d~~~~~~~~VtDSAatATA~aTGvKT~ 143 (476)
T PRK10518 66 NKPAKNVILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL--TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTY 143 (476)
T ss_pred cCCCceEEEEEeCCCCHHHHHHHHHHhcCCCCcccccccccc--ceeeeeccCCccccCcccccCchHhhHHHhhccccc
Confidence 345789999999999987764421100 122223555543 344433 111 12456889999999998643
No 86
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=33.56 E-value=64 Score=27.20 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=10.0
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+|+||+|..
T Consensus 77 ~ivitSd~GLC 87 (284)
T PRK05621 77 YIVVTSDRGLC 87 (284)
T ss_pred EEEEeCCCccc
Confidence 79999999986
No 87
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=33.32 E-value=1.2e+02 Score=26.16 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=34.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCCC
Q psy4034 164 GHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDW 215 (221)
Q Consensus 164 ~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~ 215 (221)
|.-||. -++..+.+..+|..|.++-+.-+..+ ++.++|++++-=++..
T Consensus 163 g~IFgk-E~eAk~~~~~id~~i~~~k~~a~~~~---~t~m~il~ngGkisaf 210 (320)
T COG4607 163 GKIFGK-EEEAKELLADIDASIAAAKEKAAGKG---KTALVILVNGGKISAF 210 (320)
T ss_pred HHHhCc-hHHHHHHHHHHHHHHHHHHHHhhccC---CeeEEEEecCCeeeee
Confidence 444553 36788899999999999998877644 5777887777655543
No 88
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=32.60 E-value=70 Score=27.03 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=10.0
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+|+||+|..
T Consensus 78 ~ivitSDrGLC 88 (287)
T TIGR01146 78 ILVITSDRGLC 88 (287)
T ss_pred EEEEeCCCCcc
Confidence 68999999986
No 89
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.09 E-value=89 Score=23.42 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4034 168 KPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDN 200 (221)
Q Consensus 168 g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~ 200 (221)
-+.|+|-.+-|+.+|+.+.++.+.+.+.. +..
T Consensus 69 d~es~Eg~elI~e~De~vr~~vei~te~~-i~~ 100 (156)
T COG4077 69 DKESFEGVELIKEIDEFVRRIVEILTENP-IYP 100 (156)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHhhhcCC-Ccc
Confidence 35788888999999999999999988765 443
No 90
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=32.01 E-value=1.3e+02 Score=23.73 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=29.1
Q ss_pred ecCCCccCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 157 FLGPDTAGH---NFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 157 ~~~~D~~~H---~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
+.++|..|+ +.-+++..| +.++|+.|.+.. | ...+-+|++|.|+++..
T Consensus 14 YtDTDG~G~RaDr~P~~a~~y---Y~~id~~I~~~t------G-~~~~~tVvLT~d~~Fls 64 (178)
T PF12249_consen 14 YTDTDGNGERADRRPPDAERY---YPEIDAAIREQT------G-RPPDDTVVLTDDYSFLS 64 (178)
T ss_pred eecCCCCCcccccCCCchHHh---HHHHHHHHHHhc------C-CCCCCeEEEeccccceE
Confidence 345666554 455566555 445566554433 4 34566799999998754
No 91
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=31.51 E-value=85 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q psy4034 4 FIVLFFIHVLFFLSIFEIYFKSPIIDNIP 32 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (221)
..+++++.++++.-|+.+|=+|=++++++
T Consensus 31 Mgv~m~Lf~vFl~iiLeIYNsSvlLdgv~ 59 (64)
T PRK02624 31 MAVFMVLFLVFLLIILQIYNQSLLLQGFS 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeecCcc
Confidence 34566777788888889886665555554
No 92
>PRK13373 putative dioxygenase; Provisional
Probab=31.19 E-value=87 Score=27.42 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+..+.+.+.+.++-+.+++. ..+++|||.+||...
T Consensus 26 ~~~~~v~~a~~~ir~~i~e~---kPDVvVv~~nDH~~~ 60 (344)
T PRK13373 26 SVRRRLLQAADRLGRSLDAA---RPDVIIAFLDDHFEN 60 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCEEEEEccchhhh
Confidence 34566777777777777764 489999999999865
No 93
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=28.68 E-value=1.1e+02 Score=26.34 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 176 DNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 176 ~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
+..+.+++.+.++-+.+++. ..+++|||..||...
T Consensus 22 ~~~~~v~~a~~~l~~~l~~~---~PD~iVIigpdH~~~ 56 (313)
T PRK13370 22 EVLAEVNAVIAAAREFVAAF---DPELVVLFAPDHYNG 56 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCEEEEEcCCcccc
Confidence 45666667778888888653 478999999999765
No 94
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=28.63 E-value=93 Score=20.67 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q psy4034 4 FIVLFFIHVLFFLSIFEIYFKSPIIDNIP 32 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (221)
..+++++.++++.-|+.+|=+|=++++++
T Consensus 43 Mg~~m~lf~vfl~iileiyNssvlld~v~ 71 (73)
T PLN00055 43 MGVAMALFAVFLSIILEIYNSSVLLDGIS 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhccceeecCcc
Confidence 34566677777888889886665555554
No 95
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=28.50 E-value=77 Score=29.08 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=39.2
Q ss_pred ccCCCCcEEEEEEcCCCchhhcccccCC-CCCChH--HHHHHhhCCccee---e-eeecCCcccccchhhhcccCCCCc
Q psy4034 39 GIQLAKRVVIFFADGVRSEKFYEVTDRN-SSHSPY--IRTLLANNEACGG---I-AHTQVPTETRPGAIAMLAGFYEDP 110 (221)
Q Consensus 39 ~~~~~~~vvlI~vDgl~~d~l~~~~~~~-~~~~P~--l~~l~~~~~g~~~---~-~~s~~Pt~T~p~~~si~TG~~p~~ 110 (221)
...+.+|||+++-||+++..+..+..-. ....|+ ...+.. ++... + .....-+-|..+-+++-||.--..
T Consensus 55 ~~~~~KNVI~~IgDGMG~s~vtaaR~~~~~~~~~~~~~~~~~~--~~~~g~~~t~s~~~~vTDSAAaaTA~atGvKTyN 131 (482)
T COG1785 55 SAGKAKNVILLIGDGMGPSTVTAARSYKGGPNGPFKGIDTLPD--TGLIGTYSTHSSDSNVTDSAAAATAFATGVKTYN 131 (482)
T ss_pred ccccCceEEEEecCCCChHHHHHHHHhccCCCCcccccccccc--ccccceeeccCCCCcccchhhhhhhhhhceeccC
Confidence 4556899999999999998885532100 111211 112222 33332 2 112233557778888999975433
No 96
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=28.19 E-value=43 Score=27.67 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=22.0
Q ss_pred CCCcEEEEEEcCCCchhhcccccCCCCCChHHHHHHh
Q psy4034 42 LAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (221)
Q Consensus 42 ~~~~vvlI~vDgl~~d~l~~~~~~~~~~~P~l~~l~~ 78 (221)
+...|.||+.|||+...+.. ...|+|..|..
T Consensus 101 ~~~Dv~iViaDGLSa~Av~~------n~~~~l~~L~~ 131 (237)
T PF05985_consen 101 KGPDVQIVIADGLSARAVEA------NAAPLLPALLP 131 (237)
T ss_dssp SS-SEEEEEE-TT-HHHHHT------THHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH------hHHHHHHHHHH
Confidence 34779999999999999965 45678877765
No 97
>CHL00066 psbH photosystem II protein H
Probab=27.98 E-value=99 Score=20.52 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q psy4034 4 FIVLFFIHVLFFLSIFEIYFKSPIIDNIP 32 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (221)
..+++++.++++.-|+.+|=+|=++++++
T Consensus 43 Mgv~m~lf~vfl~iiLeiyNssvlld~v~ 71 (73)
T CHL00066 43 MGVAMALFAVFLSIILEIYNSSVLLDGIS 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeecCcc
Confidence 34566677777888888886555555544
No 98
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=27.94 E-value=1e+02 Score=26.07 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=10.1
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+|+||+|..
T Consensus 74 ~IvitSDrGLC 84 (285)
T TIGR03323 74 AIVFGSDQGLV 84 (285)
T ss_pred EEEEECCCcCc
Confidence 79999999986
No 99
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=27.43 E-value=1.5e+02 Score=22.05 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEcCCCCCCCCCC
Q psy4034 184 IVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKN 218 (221)
Q Consensus 184 ~i~~ll~~l~~~g~~~~~t~viitSDHG~~~~g~H 218 (221)
.+..|++.+.++| -+..+|.-.|||+.+..--
T Consensus 16 l~~~Li~~l~~~g---~~v~~ik~~~~g~~~~d~p 47 (140)
T PF03205_consen 16 LIRKLINELKRRG---YRVAVIKHTDHGQFEIDPP 47 (140)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE-STTSTTCSTT
T ss_pred HHHHHHHHHhHcC---CceEEEEEccCCCcccCCC
Confidence 5678888998876 6677899999987765443
No 100
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=26.89 E-value=89 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCC
Q psy4034 177 NIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211 (221)
Q Consensus 177 ~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG 211 (221)
...++-+.+.++-+.+++. ..+++|||+.||.
T Consensus 69 ~~~~~~~a~~~~~~~i~~~---~PDvlViispdh~ 100 (335)
T PRK13363 69 RHAACEAAIERMRDAIEAA---RIDVAVIVGNDQM 100 (335)
T ss_pred hHHHHHHHHHHHHHHHHHh---CCCEEEEEcCCch
Confidence 3344445667777777764 4789888888884
No 101
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=26.28 E-value=3e+02 Score=22.75 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 177 NIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 177 ~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
..+.+-+.++++-+.+++. ..+++|||.+||-..
T Consensus 25 ~~~~~~~~l~~~~~~l~~~---~Pd~ivvis~~h~~~ 58 (271)
T cd07359 25 VRAAVFAAFARIRDRLEAA---RPDVVVVVGNDHFTN 58 (271)
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHhh
Confidence 3444455555566666542 478999999998654
No 102
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.75 E-value=1e+02 Score=24.94 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEcC
Q psy4034 183 GIVKAMVHTLSSYYNHDNKTAFIYSSD 209 (221)
Q Consensus 183 ~~i~~ll~~l~~~g~~~~~t~viitSD 209 (221)
..+.++.+.+.+.. . .+|.|||.||
T Consensus 134 ~aL~~~~~~~~~~~-~-~~t~vvIiSD 158 (222)
T PF05762_consen 134 QALREFLRQYARPD-L-RRTTVVIISD 158 (222)
T ss_pred HHHHHHHHHhhccc-c-cCcEEEEEec
Confidence 44555556655443 4 7899999999
No 103
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.63 E-value=2.3e+02 Score=21.44 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=26.4
Q ss_pred cCCCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4034 146 FTRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYY 196 (221)
Q Consensus 146 ~~~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g 196 (221)
...+|+++++.+..-|...... . + .....+.+.++++.+++.+
T Consensus 64 ~~~~pd~Vii~~G~ND~~~~~~-~-~------~~~~~~~l~~li~~i~~~~ 106 (188)
T cd01827 64 LAFNPNIVIIKLGTNDAKPQNW-K-Y------KDDFKKDYETMIDSFQALP 106 (188)
T ss_pred hccCCCEEEEEcccCCCCCCCC-c-c------HHHHHHHHHHHHHHHHHHC
Confidence 3347899999998888654221 1 1 1233445667777777654
No 104
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=24.49 E-value=83 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=16.3
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 185 VKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 185 i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
|.++++.. .+--+|+.+|.|+.+
T Consensus 55 i~~i~~~f-------P~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 55 IERILRDF-------PERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHC-------CCCcEEEEeeCCCcC
Confidence 44556655 344589999999986
No 105
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=23.93 E-value=1.9e+02 Score=19.30 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4034 165 HNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYY 196 (221)
Q Consensus 165 H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g 196 (221)
|.--..|+-..+.+..+|.-+++++..|++.|
T Consensus 7 Hi~~~~skWL~~~l~dmd~kvk~mlklieedg 38 (74)
T PF07765_consen 7 HISPKQSKWLQENLSDMDEKVKAMLKLIEEDG 38 (74)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 44434566678899999999999999998755
No 106
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=23.82 E-value=1.2e+02 Score=18.68 Aligned_cols=23 Identities=17% Similarity=0.246 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhc
Q psy4034 1 MNVFIVLFFIHVLFFLSIFEIYF 23 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (221)
|+++..++-+.+++...++..|+
T Consensus 1 M~il~~LIpiSl~l~~~~l~~f~ 23 (51)
T TIGR00847 1 MEILTILIPISLLLGGVGLVAFL 23 (51)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 66766666666655555544443
No 107
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.48 E-value=3.2e+02 Score=20.51 Aligned_cols=49 Identities=4% Similarity=0.139 Sum_probs=29.0
Q ss_pred CCCeEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEc
Q psy4034 148 RDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSS 208 (221)
Q Consensus 148 ~~~~~~~~~~~~~D~~~H~~g~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitS 208 (221)
.+|+++++.+..-|...... + ..++-+.+.++++.+++.. .+..|++++
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~---~------~~~~~~~~~~li~~i~~~~---~~~~iv~~~ 103 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQL---N------ASEYRQQLREFIKRLRQIL---PNASILLVG 103 (189)
T ss_pred CCCCEEEEECCCcccccCCC---C------HHHHHHHHHHHHHHHHHHC---CCCeEEEEc
Confidence 37899999998888643221 1 3344455566677776542 344455554
No 108
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=22.70 E-value=2.1e+02 Score=22.35 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEE
Q psy4034 169 PHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYS 207 (221)
Q Consensus 169 ~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viit 207 (221)
|..+.+.+..+++...+.++.+.+.+.. ..+++++||+
T Consensus 114 p~gEs~~~~~~R~~~~l~~~~~~~~~~~-~~~~~vliVs 151 (204)
T TIGR03848 114 PGGESLAQVQARAVAAVREHDARLAAEH-GPDAVWVACS 151 (204)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCCEEEEEe
Confidence 4566677888888888888887764332 2344555553
No 109
>KOG4513|consensus
Probab=22.60 E-value=1.1e+02 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=28.0
Q ss_pred ccCCCCcEEEEEEcCCCchhhcccc-cCCCCCChHHHHHHh
Q psy4034 39 GIQLAKRVVIFFADGVRSEKFYEVT-DRNSSHSPYIRTLLA 78 (221)
Q Consensus 39 ~~~~~~~vvlI~vDgl~~d~l~~~~-~~~~~~~P~l~~l~~ 78 (221)
..+..+.|.+|++||.+-+.-..++ +.....+|.+++|.+
T Consensus 14 ~~~~~~sv~liViDGWG~se~d~ygNai~~a~tp~Md~L~~ 54 (531)
T KOG4513|consen 14 KLPKGKSVALIVIDGWGESEPDQYGNAIHNAPTPAMDSLKR 54 (531)
T ss_pred ccCCCCeEEEEEEcccCCCCCccccchhhcCCChHHHHhhc
Confidence 3445677999999999976543331 123468999999986
No 110
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=22.54 E-value=1.2e+02 Score=25.72 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=10.1
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+||||+|..
T Consensus 78 ~IvitSDrGLC 88 (288)
T PRK13423 78 LVVVTSDRGLC 88 (288)
T ss_pred EEEEeCCCCCc
Confidence 89999999986
No 111
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=22.47 E-value=1e+02 Score=20.14 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy4034 5 IVLFFIHVLFFLSIF 19 (221)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (221)
+.++++.+++|++++
T Consensus 13 i~G~LIAvvLLLsIl 27 (66)
T PF13179_consen 13 ITGMLIAVVLLLSIL 27 (66)
T ss_pred hHhHHHHHHHHHHHH
Confidence 356677777777775
No 112
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=22.46 E-value=1.4e+02 Score=23.13 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCCC
Q psy4034 180 AVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214 (221)
Q Consensus 180 ~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~~ 214 (221)
+.|..|+.+.....+.| .-++|+++|.-+.+
T Consensus 109 EADDvIatla~~~~~~~----~~v~IvS~DkD~~Q 139 (169)
T PF02739_consen 109 EADDVIATLAKKASEEG----FEVIIVSGDKDLLQ 139 (169)
T ss_dssp -HHHHHHHHHHHHHHTT----CEEEEE-SSGGGGG
T ss_pred cHHHHHHHHHhhhccCC----CEEEEEcCCCCHHH
Confidence 57999999999998765 35799999987654
No 113
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=21.54 E-value=1.5e+02 Score=25.13 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=10.0
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+||||+|..
T Consensus 79 ~ivitSDrGLc 89 (289)
T PRK13427 79 LLIITANRGLC 89 (289)
T ss_pred EEEEeCCCCcc
Confidence 68999999986
No 114
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=21.37 E-value=1.1e+02 Score=26.06 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=10.0
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+|+||+|..
T Consensus 78 ~IvitSDrGLC 88 (298)
T PRK13422 78 YIVTSTDRGLC 88 (298)
T ss_pred EEEEeCCcccc
Confidence 79999999986
No 115
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=20.81 E-value=2e+02 Score=24.38 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=9.9
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+||||+|..
T Consensus 79 ~ivitSDrGLC 89 (291)
T PRK13425 79 VILITSDRGLC 89 (291)
T ss_pred EEEEeCCCccc
Confidence 78999999986
No 116
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=20.76 E-value=1.8e+02 Score=19.01 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy4034 3 VFIVLFFIHVLFFLSIFEIY 22 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (221)
|+++++++.+++++++-+..
T Consensus 33 v~~~~~~~~l~~~~~iG~~L 52 (67)
T PF11511_consen 33 VFFLGLWFLLVALYFIGLLL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45666667777777776633
No 117
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=20.76 E-value=1.6e+02 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCC
Q psy4034 178 IEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212 (221)
Q Consensus 178 i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~ 212 (221)
-+..|..|.++...+... .-.-++|.|||.-.
T Consensus 80 ~ETADs~IEr~~~el~~~---~t~~V~VaTSD~~E 111 (173)
T COG3688 80 GETADSFIERYVAELRNA---ATHQVIVATSDRAE 111 (173)
T ss_pred CccHHHHHHHHHHHHhcc---ccceEEEEeCchhh
Confidence 345789999999999742 23468899999754
No 118
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=20.74 E-value=1.4e+02 Score=25.25 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=9.8
Q ss_pred EEEEEcCCCCC
Q psy4034 203 AFIYSSDHGMT 213 (221)
Q Consensus 203 ~viitSDHG~~ 213 (221)
+|+||||+|..
T Consensus 79 ~IvitSDrGLC 89 (291)
T PRK13424 79 IVLITSDRGLC 89 (291)
T ss_pred EEEEeCCCccc
Confidence 68899999986
No 119
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=20.50 E-value=2e+02 Score=24.73 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcCCCCC
Q psy4034 177 NIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213 (221)
Q Consensus 177 ~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSDHG~~ 213 (221)
..+.+.+.+.++-+.+++. ..+++|||..||...
T Consensus 23 ~~~~~~~a~~~l~~~l~~~---~PD~iVIigphH~~~ 56 (310)
T cd07365 23 VVAEVDAAFAAARAFVAAF---DPELVVLFAPDHYNG 56 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCcccc
Confidence 4446666667777777653 478999999998763
No 120
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.07 E-value=4e+02 Score=20.27 Aligned_cols=53 Identities=8% Similarity=0.039 Sum_probs=30.6
Q ss_pred CCeEEEEEecCCCccCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEcC
Q psy4034 149 DKVIFLLHFLGPDTAGHNFK-----PHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSD 209 (221)
Q Consensus 149 ~~~~~~~~~~~~D~~~H~~g-----~~s~~y~~~i~~~D~~i~~ll~~l~~~g~~~~~t~viitSD 209 (221)
+|+.+++.+..-|......+ +..+++.+ .+.+.+.++++.+++.+ ..||+.+.
T Consensus 59 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~~~~~l~~lv~~~~~~~-----~~vili~~ 116 (200)
T cd01829 59 KPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEE---EYRQRIDELLNVARAKG-----VPVIWVGL 116 (200)
T ss_pred CCCEEEEEecCCCCccccCCCceeecCChhHHH---HHHHHHHHHHHHHHhCC-----CcEEEEcC
Confidence 78999999877776432221 11233333 34466777788777543 44555554
Done!