RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4034
         (221 letters)



>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
           pyrophosphatase.  This family consists of
           phosphodiesterases, including human plasma-cell membrane
           glycoprotein PC-1 / alkaline phosphodiesterase i /
           nucleotide pyrophosphatase (nppase). These enzymes
           catalyze the cleavage of phosphodiester and
           phosphosulfate bonds in NAD, deoxynucleotides and
           nucleotide sugars. Also in this family is ATX an
           autotaxin, tumour cell motility-stimulating protein
           which exhibits type I phosphodiesterases activity. The
           alignment encompasses the active site. Also present with
           in this family is 60-kDa Ca2+-ATPase form F. odoratum.
          Length = 342

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 97  PGAIAMLAGFYEDPSAIFKGWQDNPVEFDHIFNQSEFSVAFGSPDVLKMFTRDKVI--FL 154
           PG+ A   G+    S +                         + D LK+    +     L
Sbjct: 111 PGSHAAKPGYGPLVSELPDRLDAYNGSVPLDVITEPRVDTVLT-DWLKLLLDAERPDLLL 169

Query: 155 LHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214
           ++   PD  GH + P S E  D +  VD  +  ++  L      +N T  I  SDHGMT 
Sbjct: 170 VYLEEPDRVGHKYGPDSPEVEDALRRVDRAIGRLLEALDERGLLEN-TNVIVVSDHGMTP 228


>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
           [General function prediction only].
          Length = 450

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 17/170 (10%)

Query: 10  IHVLFFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSH 69
           + V+F  SI +++F + +   +  S +A      K++V+   DG+R     +V DR +  
Sbjct: 6   LLVVFLFSILDLFFAADVP-ILSQSYQAATPAPKKKLVLISIDGLR----ADVLDRKAGI 60

Query: 70  SPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPVEFDHIFN 129
            P++ +L  N         +  PT TRP    ++ G Y D   I      +P   D    
Sbjct: 61  LPFLSSLAENGVH-VAELISVFPTTTRPRHTTLITGSYPDEHGIVGNILYDPETGD-SVL 118

Query: 130 QSEFSVAFGSPDVLKMFTRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIE 179
           Q        +P +L     +        +       +     K       
Sbjct: 119 QFLLD----NPTILFPGDDE------AGMDVAAPFESLTVSDKLRVAVDL 158



 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 154 LLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213
           L++    D  GH + P S EY + +  VD ++  ++  L        +   I +SDHGM+
Sbjct: 222 LVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKK-RGLYEEYLVIITSDHGMS 280

Query: 214 D 214
            
Sbjct: 281 P 281


>gnl|CDD|177006 CHL00066, psbH, photosystem II protein H.
          Length = 73

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 1  MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVS 34
          M V + LF +   F   I EIY  S ++D I VS
Sbjct: 43 MGVAMALFAV---FLSIILEIYNSSVLLDGISVS 73


>gnl|CDD|179451 PRK02624, psbH, photosystem II reaction center protein H;
          Provisional.
          Length = 64

 Score = 32.4 bits (74), Expect = 0.025
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 1  MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKA 37
          M VF+VLF +   F L I +IY +S ++    V    
Sbjct: 31 MAVFMVLFLV---FLLIILQIYNQSLLLQGFSVDWNG 64


>gnl|CDD|177686 PLN00055, PLN00055, photosystem II reaction center protein H;
          Provisional.
          Length = 73

 Score = 32.5 bits (74), Expect = 0.026
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 1  MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVS 34
          M V + LF +   F   I EIY  S ++D I V+
Sbjct: 43 MGVAMALFAV---FLSIILEIYNSSVLLDGISVN 73


>gnl|CDD|217375 pfam03117, Herpes_UL49_1, UL49 family.  Members of this family,
           found in several herpesviruses, include EBV BFRF2 and
           other UL49 proteins (e.g. HCMVA UL49, HSV6 U33). There
           are eight conserved cysteine residues in this alignment,
           all lying towards the C-terminus. Their function is
           unknown.
          Length = 234

 Score = 33.4 bits (77), Expect = 0.052
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 54  VRSEKFYEVTDRNSSHSPYIRTLLANNEACG 84
           +R E  YEV        P IR ++ANN AC 
Sbjct: 153 LRVEPLYEVVSAGVGGRPRIRAVIANNAACA 183


>gnl|CDD|216643 pfam01676, Metalloenzyme, Metalloenzyme superfamily.  This family
           includes phosphopentomutase and
           2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase. This family is also related to pfam00245. The
           alignment contains the most conserved residues that are
           probably involved in metal binding and catalysis.
          Length = 423

 Score = 32.7 bits (75), Expect = 0.14
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 17/82 (20%)

Query: 140 PDVLKMFTRDKVI----------FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMV 189
           PD+      DK+I            ++F   D  GH      +     IEAVD  +  ++
Sbjct: 292 PDMSAKEITDKLIEALEKGEYDFIFVNFANTDMVGHTGDV--EAKVKAIEAVDARLGELL 349

Query: 190 HTLSSYYNHDNKTAFIYSSDHG 211
             L            I ++DHG
Sbjct: 350 DALE-----KEDDLLIITADHG 366


>gnl|CDD|235780 PRK06330, PRK06330, transcript cleavage factor/unknown domain
           fusion protein; Validated.
          Length = 718

 Score = 30.5 bits (69), Expect = 0.68
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 9/48 (18%)

Query: 121 PVEFDHIFNQSEFSVAFGSPDVLKMFTRD---KVI-FLLHFLGPDTAG 164
           P+  DH       +  FG PD  + F +    +VI  LL  LGP TA 
Sbjct: 188 PLSKDHFL-----ARRFGDPDGFEAFAKKNPVEVIECLLKDLGPKTAK 230


>gnl|CDD|165574 PHA03330, PHA03330, putative primase; Provisional.
          Length = 771

 Score = 30.5 bits (68), Expect = 0.68
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 90  QVPTETRPGAIAMLAGFYEDPSAIFKGWQDNPVEFDHIFNQSEFS 134
           Q P   RPG  A  AGFY  P  +FK +     E  H F +S F 
Sbjct: 258 QFPNLARPGNCAA-AGFYHIPMVLFKAFDK---EVKHKFGKSCFD 298


>gnl|CDD|189695 pfam00737, PsbH, Photosystem II 10 kDa phosphoprotein.  This
          protein is phosphorylated in a light dependent
          reaction.
          Length = 52

 Score = 27.7 bits (62), Expect = 0.91
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 1  MNVFIVLFFIHVLFFLSIFEIYFKSPII 28
          M VF+ LF +   F L I EIY  S ++
Sbjct: 28 MGVFMALFAV---FLLIILEIYNSSLLL 52


>gnl|CDD|235203 PRK04024, PRK04024, cofactor-independent phosphoglycerate mutase;
           Provisional.
          Length = 412

 Score = 29.5 bits (67), Expect = 1.5
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDH 210
            LL+  G D AGH+     K   + IE +D ++  ++  L       ++     + DH
Sbjct: 297 VLLNIKGTDEAGHDGDFEGKV--EVIEKIDKMLGYILDNLDL-----DEVYIAVTGDH 347


>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
           peroxidases, and lactoperoxidases.  This well conserved
           family of animal heme peroxidases contains members with
           somewhat diverse functions. Myeloperoxidases are
           lysosomal proteins found in azurophilic granules of
           neutrophils and the lysosomes of monocytes. They are
           involved in the formation of microbicidal agents upon
           activation of activated neutrophils (neutrophils
           undergoing respiratory bursts as a result of
           phagocytosis), by catalyzing the conversion of hydrogen
           peroxide to hypochlorous acid. As a heme protein,
           myeloperoxidase is responsible for the greenish tint of
           pus, which is rich in neutrophils. Eosinophil
           peroxidases are haloperoxidases as well, preferring
           bromide over chloride. Expressed by eosinophil
           granulocytes, they are involved in attacking
           multicellular parasites and play roles in various
           inflammatory diseases such as asthma. The haloperoxidase
           lactoperoxidase is secreted from mucosal glands and
           provides antibacterial activity by oxidizing a variety
           of substrates such as bromide or chloride in the
           presence of hydrogen peroxide.
          Length = 411

 Score = 29.3 bits (66), Expect = 1.7
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM 212
           +L   LG D A     P  + Y    E+VD  + A V T +    H     F++  D   
Sbjct: 147 YLPLILGEDAA--ARLPPYRGYN---ESVDPRI-ANVFTTAFRRGHTTVQPFVFRLDENY 200

Query: 213 TDWGKNS 219
                N 
Sbjct: 201 QPHPPNP 207


>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase. 
          Length = 332

 Score = 29.0 bits (65), Expect = 1.8
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 174 YGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211
           Y +++   D  +  ++  L +     + T  +Y+SDHG
Sbjct: 204 YDNSLLYTDDAIGRVLEKLEN--GLLDNTLVVYTSDHG 239


>gnl|CDD|232912 TIGR00306, apgM, 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase, archaeal form.  Experimentally
           characterized in archaea as
           2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase. This model describes a set of proteins in the
           Archaea (two each in Methanococcus jannaschii,
           Methanobacterium thermoautotrophicum, and Archaeoglobus
           fulgidus) and in Aquifex aeolicus (1 member) [Energy
           metabolism, Glycolysis/gluconeogenesis].
          Length = 396

 Score = 28.6 bits (64), Expect = 2.4
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 154 LLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDH 210
           L+H  GPD AGH+  P  K     IE +D  +   +  L       ++T  I ++DH
Sbjct: 292 LVHTKGPDEAGHDGDPELKVRA--IEKIDSKIVGPLLALD-----LDETRLILTADH 341


>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a
           small domain originally identified in cystathionine
           beta-synthase and is subsequently found in a wide range
           of different proteins. CBS domains usually occur in
           tandem repeats. They associate to form a so-called
           Bateman domain or a CBS pair based on crystallographic
           studies in bacteria.  The CBS pair was used as a basis
           for this cd hierarchy since the human CBS proteins can
           adopt the typical core structure and form an
           intramolecular CBS pair.  The interface between the two
           CBS domains forms a cleft that is a potential ligand
           binding site. The CBS pair coexists with a variety of
           other functional domains and this has been used to help
           in its classification here.  It has been proposed that
           the CBS domain may play a regulatory role, although its
           exact function is unknown. Mutations of conserved
           residues within this domain are associated with a
           variety of human hereditary diseases, including
           congenital myotonia, idiopathic generalized epilepsy,
           hypercalciuric nephrolithiasis, and classic Bartter
           syndrome (CLC chloride channel family members),
           Wolff-Parkinson-White syndrome (gamma 2 subunit of
           AMP-activated protein kinase), retinitis pigmentosa (IMP
           dehydrogenase-1), and homocystinuria (cystathionine
           beta-synthase).
          Length = 111

 Score = 27.3 bits (61), Expect = 2.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 130 QSEFSVAFGSPDVLKMFTRDKVIFLLHFLGPDTA 163
           Q EF V  G   ++ + TRD +I  L   GPD  
Sbjct: 24  QHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAP 57


>gnl|CDD|226161 COG3635, COG3635, Predicted phosphoglycerate mutase, AP superfamily
           [Carbohydrate transport and metabolism].
          Length = 408

 Score = 27.7 bits (62), Expect = 5.2
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 8/58 (13%)

Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDH 210
             +H    D AGH+     K     +  ++ I KA+   L       ++     + DH
Sbjct: 300 VFVHIKATDEAGHDGDFEGK-----VRVIEDIDKAIGPLLDL---DLDEDVIAVTGDH 349


>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
           Srd.  Chemoreception is mediated in Caenorhabditis
           elegans by members of the seven-transmembrane
           G-protein-coupled receptor class (7TM GPCRs) of proteins
           which are of the serpentine type. Srd is part of the
           larger Str superfamily of chemoreceptors.
           Chemoperception is one of the central senses of soil
           nematodes like C. elegans which are otherwise 'blind'
           and 'deaf'.
          Length = 293

 Score = 27.5 bits (62), Expect = 5.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 1   MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPV 33
               I++FF+H +  LS   I       D +PV
Sbjct: 118 RKKLILIFFLHYIPSLSQLLIVIFLVPTDFLPV 150


>gnl|CDD|182595 PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.
          Length = 382

 Score = 26.9 bits (60), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 183 GIVKAMVHTLSSYYN 197
           G+V  M H L ++YN
Sbjct: 259 GLVHGMAHPLGAFYN 273


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,577,738
Number of extensions: 1098297
Number of successful extensions: 1220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 43
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)