RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4034
(221 letters)
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 64.7 bits (157), Expect = 1e-12
Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 62/230 (26%)
Query: 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAM 102
+++ DG+R++ +P + L + P+ T P +
Sbjct: 6 PHALLLISIDGLRADMLDR------GITPNLSHLAREGVRARWM-APSYPSLTFPNHYTL 58
Query: 103 LAG---------------------FYEDPSAIFKG-WQDNPVEFDHIFNQSEFSVAFGSP 140
+ G + A+ W + + N + + + P
Sbjct: 59 VTGLRPDHHGIVHNSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWP 118
Query: 141 ----------------------------DVLKMFTRDKV----IFLLHFLGPDTAGHNFK 168
V D + L+F D AGH+
Sbjct: 119 GSEAAIKGVRPSQWRHYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHG 178
Query: 169 PHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKN 218
P S++Y D + AVD + ++ + +T I SDHGM +
Sbjct: 179 PESRQYADAVRAVDAAIGRLLAGMQR-DGTRARTNIIVVSDHGMAEVAPG 227
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 49.2 bits (116), Expect = 4e-07
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 141 DVLKMFTRDKVIF-LLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHD 199
L + ++ + PD +GH + P E + + +D V ++ L
Sbjct: 255 QWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQ-LKLH 313
Query: 200 NKTAFIYSSDHGMTD 214
I+ DHGM D
Sbjct: 314 RCVNVIFVGDHGMED 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 2e-06
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)
Query: 27 IIDNI--PVSVKAQGIQLAK-------RVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLL 77
++ N+ + A + K + V F + + +++LL
Sbjct: 249 VLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 78 ANNEACGGIAHTQVPTE---TRPGAIAMLAGFYEDPSAIFKGWQDNPVEFDHIFNQSEFS 134
+P E T P ++++A D A + W+ V D + E S
Sbjct: 308 LK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTIIESS 362
Query: 135 VAFGSPDVLKMFTRDKVIF 153
+ P + +F
Sbjct: 363 LNVLEPAEYRKMFDRLSVF 381
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A
{Sinorhizobium meliloti} PDB: 3szz_A 3t00_A 3t01_A
3t02_A
Length = 427
Score = 43.3 bits (101), Expect = 3e-05
Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 20/176 (11%)
Query: 49 FFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEA--------CGGIAHTQVPTETRPGAI 100
+ + E+ + D +P I + A A G
Sbjct: 93 YLYEPSTGEEVM-MNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRA 151
Query: 101 AMLAGFYEDPSAIFKGWQDNPVEFDHIFNQSEFSVAFGS--PDVLKMFTRDKVIFLLHFL 158
+ D + + DN + +S A R+ +++
Sbjct: 152 VCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLT 211
Query: 159 GPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD 214
D H + P E E D + + A + ++DHGM
Sbjct: 212 TTDYVQHKYAPGVPEANSFYEMFDRYLAEL---------DGLGAAIVVTADHGMKP 258
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 40.9 bits (95), Expect = 2e-04
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 160 PDTAGHNFKPHSK--EYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211
+ +F S+ YGD +E +D V +++ L N T ++SD G
Sbjct: 271 ALFSSKDFAGKSQHGVYGDAVEEMDWSVGQILNLLDE-LRLANDTLIYFTSDQG 323
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas
fluorescens} SCOP: c.76.1.4
Length = 406
Score = 40.6 bits (94), Expect = 2e-04
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 154 LLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMT 213
++ D H P + E +D K H+ ++DHGM
Sbjct: 194 FMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFK---------RYHEQGAIVAITADHGMN 244
Query: 214 D 214
Sbjct: 245 A 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.007
Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 73/239 (30%)
Query: 8 FFIHVL--FFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEK---FYEV 62
F L F I + D+ P + +L + + + + V K F +V
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTP----AELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 63 TDRNSSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIA---MLAGFYE-------- 108
N + + L N+ I H ++ E + ++ +
Sbjct: 84 L--NLCLTEFENCYLEGND----I-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 109 ----DPSAIFKGWQDNPVEFDHIFN-QSEFSVAFGSPDVLKMFT--RDKVIFLLHFLGPD 161
SA+F+ + + IF Q G+ D F RD ++
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQ-------GNTDDY--FEELRD--LY-------- 177
Query: 162 TAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGM--TDWGKN 218
+ Y + ++K TLS +++ G+ +W +N
Sbjct: 178 ----------QTYHVLVGD---LIKFSAETLSELIRTTLDAEKVFT--QGLNILEWLEN 221
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein
complex, transmembrane alpha-helix, E transport,
photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL
LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus
vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H*
3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Length = 65
Score = 33.0 bits (75), Expect = 0.009
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 1 MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKAQG 39
M VF+ LF + F L I EIY + I+D + VS KA G
Sbjct: 30 MAVFMGLFLV---FLLIILEIYNSTLILDGVNVSWKALG 65
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase;
phosphonopyruvate decarboxylase, isomerase, structural
genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Length = 412
Score = 33.4 bits (76), Expect = 0.045
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 141 DVLKMFTRDKVIFLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDN 200
+D LHF D AGH+ KP K + IE D ++ ++ +
Sbjct: 285 KKAVELLKDYDFVFLHFKPTDAAGHDNKPKLKA--ELIERADRMIGYILDHVD-----LE 337
Query: 201 KTAFIYSSDHG 211
+ + DH
Sbjct: 338 EVVIAITGDHS 348
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 32.3 bits (74), Expect = 0.10
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 173 EYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211
+GD++ +D V ++ + +T I+++D+G
Sbjct: 228 PFGDSLMELDAAVGTLMTAIGD-LGLLEETLVIFTADNG 265
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 30.1 bits (67), Expect = 0.56
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 153 FLLHFLGPDTAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHG 211
L++ D AGH+ D IE +D ++ + + DH
Sbjct: 294 VLVNIKATDVAGHDGNYP--LKRDVIEDIDRAMEPLKSIGDHAV-------ICVTGDHS 343
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 29.7 bits (67), Expect = 0.75
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 172 KEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNS 219
Y + +D V + L S +N T FI+S+D+G +
Sbjct: 223 HHYAGMVSLMDEAVGNVTAALKSSGLWNN-TVFIFSTDNGGQTLAGGN 269
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 28.8 bits (65), Expect = 1.4
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 163 AGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTD-----WGK 217
G F+ + + Y I VD V ++ L N + T +++SDHG+ GK
Sbjct: 268 MGDYFRNNIRNYYACITGVDENVGRIIEALKQN-NLFDNTIVVFTSDHGICMGAHENAGK 326
Query: 218 NSM 220
+
Sbjct: 327 DIF 329
>1zp7_A Recombination protein U; recombination,DNA-binding
protein,resolvase, DNA binding protein; 2.25A {Bacillus
subtilis} PDB: 1rzn_A
Length = 206
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 165 HNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYY 196
NF H E+ ++A DGI ++ Y
Sbjct: 114 QNFHDHQIEHMKQVKAQDGICFVIISAFDQVY 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.422
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,474,376
Number of extensions: 203345
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 23
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)