RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4034
         (221 letters)



>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
           fluorescens [TaxId: 294]}
          Length = 406

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 15/178 (8%), Positives = 42/178 (23%), Gaps = 4/178 (2%)

Query: 43  AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAM 102
           +   ++   DG   E   +        +P++  L              VP+ T P  +++
Sbjct: 15  SAPTIVICVDGCEQEYINQAIQAG--QAPFLAELT--GFGTVLTGDCVVPSFTNPNNLSI 70

Query: 103 LAGFYEDPSAIFKGWQDNPVEFDHIFNQSEFSVAFGSPDVLKMFTRDKVIFLLHFLGPDT 162
           + G       I   +  +    + +       +   +           V  +        
Sbjct: 71  VTGAPPSVHGICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRN 130

Query: 163 AGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNSM 220
              +         +  + V+     + + L+              S+           
Sbjct: 131 LLGHQLKGICFSAEKADQVNLEEHGVENILARVGMPVPSVYSADLSEFVFAAGLSLLT 188


>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein
          H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 64

 Score = 34.8 bits (80), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 1  MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVS 34
          M VF+ LF +   F L I EIY  + I+D + VS
Sbjct: 30 MAVFMGLFLV---FLLIILEIYNSTLILDGVNVS 60


>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate
           reductoisomerase {Zymomonas mobilis [TaxId: 542]}
          Length = 138

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 162 TAGHNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYYNHDNKTAFIYSSDHGMTDWGKNSM 220
           +AG       +E+G  +  VD    A+       +++ +    I  +  G      +  
Sbjct: 4   SAGGLMIDAVREHGTTLLPVDSEHNAIFQCF--PHHNRDYVRRIIITASGGPFRTTSLA 60


>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
           factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
          Length = 165

 Score = 24.7 bits (54), Expect = 6.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 165 HNFKPHSKEYGDNIEAVDGIVKAMVHTLSSYY 196
            NF  H  E+   ++A DGI   ++      Y
Sbjct: 81  QNFHDHQIEHMKQVKAQDGICFVIISAFDQVY 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 846,254
Number of extensions: 37804
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 10
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)