BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4035
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q08|A Chain A, Crystal Structure Of The Zn(Ii) Form Of E. Coli Zntr, A
          Zinc-Sensing Transcriptional Regulator, At 1.9 A
          Resolution (Space Group P212121)
 pdb|1Q08|B Chain B, Crystal Structure Of The Zn(Ii) Form Of E. Coli Zntr, A
          Zinc-Sensing Transcriptional Regulator, At 1.9 A
          Resolution (Space Group P212121)
 pdb|1Q09|A Chain A, Crystal Structure Of The Zn(Ii) Form Of E. Coli Zntr, A
          Zinc-Sensing Transcriptional Regulator (Space Group
          I4122)
 pdb|1Q0A|A Chain A, Crystal Structure Of The Zn(Ii) Form Of E. Coli Zntr, A
          Zinc-Sensing Transcriptional Regulator (Space Group
          C222)
 pdb|1Q0A|B Chain B, Crystal Structure Of The Zn(Ii) Form Of E. Coli Zntr, A
          Zinc-Sensing Transcriptional Regulator (Space Group
          C222)
          Length = 99

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 51 ADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQV 91
          + G+  E+  EV  R +      R+L   N+AC G AH+ V
Sbjct: 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSV 80


>pdb|3T90|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate
           N-Acetyltransferase From Arabidopsis Thaliana
          Length = 149

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 24  KSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFYEV 62
           K+  I+++ V  + +G QL K+VV F  D  +S   Y+V
Sbjct: 82  KAGHIEDVVVDSRFRGKQLGKKVVEFLMDHCKSMGCYKV 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,890,494
Number of Sequences: 62578
Number of extensions: 91907
Number of successful extensions: 197
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 2
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)