Query psy4035
Match_columns 121
No_of_seqs 111 out of 168
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 23:42:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2124|consensus 100.0 5.6E-50 1.2E-54 363.4 8.9 114 1-119 1-116 (883)
2 COG1524 Uncharacterized protei 99.5 8.8E-15 1.9E-19 122.7 6.9 106 6-118 3-108 (450)
3 TIGR02335 hydr_PhnA phosphonoa 97.7 4.6E-05 9.9E-10 65.1 5.2 70 39-112 8-77 (408)
4 PF01663 Phosphodiest: Type I 97.7 8.9E-06 1.9E-10 63.8 0.1 63 46-114 1-64 (365)
5 KOG2125|consensus 96.7 0.0029 6.2E-08 58.9 5.2 88 12-105 18-108 (760)
6 KOG2645|consensus 94.2 0.063 1.4E-06 47.0 4.1 61 45-113 24-85 (418)
7 PF08665 PglZ: PglZ domain; I 93.6 0.034 7.3E-07 42.0 1.3 52 44-107 1-56 (181)
8 COG3379 Uncharacterized conser 93.2 0.048 1E-06 48.6 1.7 59 43-107 3-61 (471)
9 PRK04135 cofactor-independent 91.6 0.14 2.9E-06 44.7 2.5 58 43-104 7-71 (395)
10 PRK13759 arylsulfatase; Provis 91.4 0.2 4.4E-06 43.2 3.4 64 45-112 8-72 (485)
11 PRK04024 cofactor-independent 90.5 0.18 4E-06 43.7 2.3 57 45-104 4-67 (412)
12 TIGR02535 hyp_Hser_kinase prop 90.4 0.18 4E-06 43.4 2.2 57 45-104 2-65 (396)
13 PRK04200 cofactor-independent 90.4 0.19 4E-06 43.4 2.2 57 45-104 2-65 (395)
14 TIGR00306 apgM 2,3-bisphosphog 88.6 0.42 9.1E-06 41.3 3.0 55 47-104 1-62 (396)
15 PF00884 Sulfatase: Sulfatase; 85.4 0.46 9.9E-06 36.0 1.4 64 45-113 2-67 (308)
16 TIGR03417 chol_sulfatase choli 82.3 0.77 1.7E-05 39.8 1.6 65 45-112 4-69 (500)
17 COG3635 Predicted phosphoglyce 79.7 3.4 7.4E-05 36.6 4.7 58 44-104 4-68 (408)
18 PF12385 Peptidase_C70: Papain 61.8 8.9 0.00019 30.3 3.0 48 65-114 93-140 (166)
19 PRK09598 lipid A phosphoethano 61.6 5.8 0.00013 35.5 2.1 60 45-109 225-287 (522)
20 PF05827 ATP-synt_S1: Vacuolar 52.6 26 0.00057 28.0 4.3 48 40-90 42-89 (282)
21 KOG0700|consensus 51.6 9.6 0.00021 33.6 1.8 34 20-54 307-340 (390)
22 PF11108 Phage_glycop_gL: Vira 49.9 6.1 0.00013 29.2 0.3 51 11-61 12-64 (111)
23 COG0846 SIR2 NAD-dependent pro 48.6 6.2 0.00013 32.4 0.2 53 42-115 11-63 (250)
24 COG3083 Predicted hydrolase of 43.2 18 0.00039 33.6 2.2 56 4-61 178-277 (600)
25 TIGR02687 conserved hypothetic 39.2 28 0.0006 33.2 2.9 49 44-103 457-508 (844)
26 PF05985 EutC: Ethanolamine am 29.2 37 0.0008 28.1 1.8 29 44-78 103-131 (237)
27 cd00016 alkPPc Alkaline phosph 29.0 47 0.001 28.6 2.4 64 40-107 3-75 (384)
28 COG0067 GltB Glutamate synthas 26.9 45 0.00098 29.2 2.0 18 80-97 200-217 (371)
29 COG4947 Uncharacterized protei 26.9 34 0.00075 28.1 1.2 48 20-78 149-198 (227)
30 cd08059 MPN_prok_mb Mpr1p, Pad 26.3 1.6E+02 0.0034 19.7 4.3 56 42-97 15-72 (101)
31 TIGR00632 vsr DNA mismatch end 26.2 55 0.0012 24.2 2.1 25 24-54 41-65 (117)
32 PRK05465 ethanolamine ammonia- 24.6 33 0.0007 28.9 0.7 30 43-78 109-138 (260)
33 PF00556 LHC: Antenna complex 24.1 73 0.0016 19.1 2.0 14 3-16 21-34 (40)
34 PRK11560 phosphoethanolamine t 24.0 85 0.0018 28.6 3.2 58 44-108 247-307 (558)
35 PTZ00408 NAD-dependent deacety 23.1 44 0.00095 26.9 1.2 50 43-114 4-53 (242)
36 PRK10518 alkaline phosphatase; 22.5 67 0.0014 28.9 2.3 18 40-57 66-83 (476)
37 TIGR02794 tolA_full TolA prote 22.0 61 0.0013 27.7 1.8 16 3-18 3-18 (346)
38 cd01471 vWA_micronemal_protein 21.9 73 0.0016 23.1 2.1 16 40-55 105-120 (186)
39 PF12941 HCV_NS5a_C: HCV NS5a 21.9 30 0.00065 28.9 0.0 27 23-49 129-158 (244)
40 PF02775 TPP_enzyme_C: Thiamin 21.6 51 0.0011 23.5 1.2 19 40-58 43-61 (153)
41 PF15161 Neuropep_like: Neurop 21.1 49 0.0011 22.4 0.9 12 88-99 6-17 (65)
42 PF06024 DUF912: Nucleopolyhed 20.9 1E+02 0.0022 21.7 2.6 21 2-24 65-85 (101)
43 KOG2126|consensus 20.7 63 0.0014 31.5 1.8 15 43-57 58-72 (895)
44 COG3961 Pyruvate decarboxylase 20.1 64 0.0014 29.9 1.7 16 39-54 425-440 (557)
No 1
>KOG2124|consensus
Probab=100.00 E-value=5.6e-50 Score=363.45 Aligned_cols=114 Identities=42% Similarity=0.801 Sum_probs=107.0
Q ss_pred CchhHHHHHHHHHHHHhheeEeeeCCccCCCcccccccCC-CCCceEEEEeecCcchhhhhcccCCCC-CCChhHHHHhh
Q psy4035 1 MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKAQGI-QLAKRVVIFFADGVRSEKFYEVTDRNS-SHSPYIRTLLA 78 (121)
Q Consensus 1 ~~~~~~~v~~Hll~l~SIfdIYF~Spiv~gm~~p~~~~~~-pPA~RLVlfv~DGLRAd~ff~~~~~~~-~~~P~Lr~i~~ 78 (121)
|++..+++++|++++.||||||||||++|||+ ||++..+ |||||||+||+||||||++|+ ++| +++||||+|++
T Consensus 1 ~~l~~~~llvH~~~l~sIf~Iyf~splv~gm~-p~~t~~~~ppA~RLvl~v~DGLRAd~~~~---~~~~s~ap~LR~ii~ 76 (883)
T KOG2124|consen 1 TRLWKLGLLVHLLLLGSIFDIYFQSPLVHGMT-PQKTLLEPPPAKRLVLFVGDGLRADTLFE---PNCESRAPFLRSIIL 76 (883)
T ss_pred CchhHHHHHHHHHHHHHHheeeeecCCCCCCc-ccccCCCCChHHhEEEEcccccchhhhcC---ccccccCCcHHHHHH
Confidence 45666779999999999999999999999999 9987654 699999999999999999999 677 49999999999
Q ss_pred cCCceEEEeecCCCCCCCCceeeeecccCCCHHHHhhcccc
Q psy4035 79 NNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFKLCSS 119 (121)
Q Consensus 79 ~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sAv~~gwk~ 119 (121)
+||+|||||||+|||||||||||||||||||||+|||||+
T Consensus 77 -~qg~~GiS~tr~PTeSRpghvAliaGfyedpSAvtkgwk~ 116 (883)
T KOG2124|consen 77 -NQGTVGISHTRVPTESRPGHVALIAGFYEDPSAVTKGWKS 116 (883)
T ss_pred -hcCcccccccCCCCCCCCCcEEEEeccccChHHhhhhhhc
Confidence 9999999999999999999999999999999999999986
No 2
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=99.55 E-value=8.8e-15 Score=122.73 Aligned_cols=106 Identities=23% Similarity=0.357 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhheeEeeeCCccCCCcccccccCCCCCceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEE
Q psy4035 6 VLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGG 85 (121)
Q Consensus 6 ~~v~~Hll~l~SIfdIYF~Spiv~gm~~p~~~~~~pPA~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~G 85 (121)
+.+ .++.++.+++++|+.++....+. +.....+++.+++|+++.||||||.++.. +...|+|+++.. +...+.
T Consensus 3 ~~~-~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~klvli~iDgl~~d~~~~~----~~~~p~l~~l~~-~g~~~~ 75 (450)
T COG1524 3 IGI-LLVVFLFSILDLFFAADVPILSQ-SYQAATPAPKKKLVLISIDGLRADVLDRK----AGILPFLSSLAE-NGVHVA 75 (450)
T ss_pred eee-hhHHHHHHHHhhccccCcccccC-cccccCCcchheEEEEEEeccChhhhhhh----ccCchhHHHHHh-CCceeE
Confidence 345 88999999999999999999998 77777889999999999999999999974 668999999997 444499
Q ss_pred EeecCCCCCCCCceeeeecccCCCHHHHhhccc
Q psy4035 86 IAHTQVPTETRPGAIAMLAGFYEDPSAIFKLCS 118 (121)
Q Consensus 86 IShtrvPTeSRpgHVAl~aGfyED~sAv~~gwk 118 (121)
.++++.||+|+|+|.+|+.|.|.|.+.|..+|.
T Consensus 76 ~~~s~~Pt~T~p~~~tl~TG~~P~~hgi~~N~~ 108 (450)
T COG1524 76 ELISVFPTTTRPRHTTLITGSYPDEHGIVGNIL 108 (450)
T ss_pred EEecCCCccccccceeeecccCcchhccccccc
Confidence 999999999999999999999999999999885
No 3
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=97.74 E-value=4.6e-05 Score=65.09 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCCCCceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCCCHHH
Q psy4035 39 GIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSA 112 (121)
Q Consensus 39 ~~pPA~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sA 112 (121)
..-|++|+||+..|||+++-+-+... .-.+|+|++++. +|..+.-++-.||.+-|.|.+|..|.|=.-.-
T Consensus 8 ~~~~~~~vvvi~vDGl~~~~l~~~~~--~g~~P~L~~l~~--~G~~~~~~s~~Ps~T~p~~tSi~TG~~P~~HG 77 (408)
T TIGR02335 8 YALPQRPTVVICVDGCDPEYINRGIA--DGVAPFIAELTG--FGTVLTADCVVPSFTNPNNLSIVTGAPPAVHG 77 (408)
T ss_pred ecCCCCCEEEEEeCCCCHHHHHhhhh--cCCCchHHHHHh--cCceeeccCCCCCcccccceeeecCCChhhCc
Confidence 35689999999999999998876321 125999999986 66666678899999999999999998865443
No 4
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=97.69 E-value=8.9e-06 Score=63.80 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=50.4
Q ss_pred EEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEE-eecCCCCCCCCceeeeecccCCCHHHHh
Q psy4035 46 VVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGI-AHTQVPTETRPGAIAMLAGFYEDPSAIF 114 (121)
Q Consensus 46 LVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GI-ShtrvPTeSRpgHVAl~aGfyED~sAv~ 114 (121)
||+++.||||+|.+.+.. ...|+|+++++ +|.++- .++..||.|.|+|.+|+.|.|-.-.-|.
T Consensus 1 vv~i~iDGl~~~~l~~~~----~~~p~l~~l~~--~G~~~~~~~s~~Ps~T~~~~~si~TG~~P~~HGi~ 64 (365)
T PF01663_consen 1 VVVIGIDGLRPDLLDRYI----GNLPNLKRLAE--EGVYGPNLRSVFPSTTAPNWASILTGAYPEEHGII 64 (365)
T ss_dssp EEEEEETT-BHHHHHHHH----TSSHHHHHHHH--HSEEECEEE-SSSBSHHHHHHHHHHSS-HHHHS--
T ss_pred cEEEEEeCCCHHHHHhHh----ccCHHHHHHHH--CCCCCCCceecCCCCcccchhhhhcCccccccCCc
Confidence 799999999999998643 36999999975 899999 8889999999999999999886554443
No 5
>KOG2125|consensus
Probab=96.66 E-value=0.0029 Score=58.86 Aligned_cols=88 Identities=22% Similarity=0.344 Sum_probs=64.4
Q ss_pred HHHHHhheeEeeeCCccCCCcccccccC--CCCCceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEee-
Q psy4035 12 VLFFLSIFEIYFKSPIIDNIPVSVKAQG--IQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAH- 88 (121)
Q Consensus 12 ll~l~SIfdIYF~Spiv~gm~~p~~~~~--~pPA~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GISh- 88 (121)
++|+++-|-.=.+.+=..+-+ |.+-.+ +|+-+|||..+.|+||||=.|+.+ .+-||=++.+. +.-.||-.-
T Consensus 18 ~Lfv~gFfp~k~~~tg~s~~~-~~~d~~~~~~~~~~lvf~viDalr~dF~~~s~----~smp~t~s~~~-~~~a~g~~a~ 91 (760)
T KOG2125|consen 18 SLFVFGFFPVKITLTGKSGSE-PYRDSEQPPPEKDRLVFVVIDALRADFLFSSK----ESMPFTQSLLA-NGDAKGYHAF 91 (760)
T ss_pred HHHHhhcccccccCCCcccCC-CccccCCCCcccceEEEEEhhhhhhhccccCC----CCCccHHHHHh-cCCceeeecc
Confidence 356666665555555555555 554433 455799999999999999999754 36999999999 777777654
Q ss_pred cCCCCCCCCceeeeecc
Q psy4035 89 TQVPTETRPGAIAMLAG 105 (121)
Q Consensus 89 trvPTeSRpgHVAl~aG 105 (121)
+|.||-+-|--=|+..|
T Consensus 92 A~~PTVTmPRLka~tTG 108 (760)
T KOG2125|consen 92 ARPPTVTMPRLKAITTG 108 (760)
T ss_pred cCCCcccchhhhhhhcC
Confidence 69999988877777665
No 6
>KOG2645|consensus
Probab=94.16 E-value=0.063 Score=47.05 Aligned_cols=61 Identities=23% Similarity=0.422 Sum_probs=52.0
Q ss_pred eEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEeec-CCCCCCCCceeeeecccCCCHHHH
Q psy4035 45 RVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHT-QVPTETRPGAIAMLAGFYEDPSAI 113 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GISht-rvPTeSRpgHVAl~aGfyED~sAv 113 (121)
-|++|..||.|||-+++ .-.|.|+++.. .|.|=.... --||.|-|-|-.|..|.|+--.-+
T Consensus 24 ~lllis~DGFr~~yl~~------~~~p~i~~l~~--~gv~~~~~~pvFpT~TfPNhySivTGlype~HGI 85 (418)
T KOG2645|consen 24 KLLLISFDGFRADYLYK------VLTPNIHKLAS--CGVWVTYVIPVFPTKTFPNHYSIVTGLYPESHGI 85 (418)
T ss_pred CEEEEEecccchhhccC------ccCccHHHHHh--ccccccEEEecCcccccCCcceeeecccchhcee
Confidence 79999999999999997 46999999986 777777765 679999999999999999755433
No 7
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=93.64 E-value=0.034 Score=42.04 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=36.2
Q ss_pred ceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCce--EEE--eecCCCCCCCCceeeeecccC
Q psy4035 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEAC--GGI--AHTQVPTETRPGAIAMLAGFY 107 (121)
Q Consensus 44 ~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~--~GI--ShtrvPTeSRpgHVAl~aGfy 107 (121)
+|++++|.||||.|..-+. .+.|+ +++. +=. .-+-.||.+.=|--|||+|-.
T Consensus 1 ~kv~liv~Dgmrye~~~eL-------~~~L~-----~~~~~~~~~~~~~a~LPS~T~~sr~ALl~g~~ 56 (181)
T PF08665_consen 1 KKVALIVSDGMRYEQAREL-------AESLS-----REGWFEVELDPALAWLPSITEVSRAALLPGKL 56 (181)
T ss_pred CeEEEEEEcCCCHHHHHHH-------HHHHh-----hccCcceeeeeeeEeccchhHHHHHHHcCCCC
Confidence 6999999999999998872 33333 2222 111 112588888888889999977
No 8
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.048 Score=48.56 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=51.3
Q ss_pred CceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccC
Q psy4035 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFY 107 (121)
Q Consensus 43 A~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfy 107 (121)
+.|++++..||.-- ++|+...+ +.|.|+++++ +|+||+-.+-+|+++-|+--.|++|..
T Consensus 3 ~~K~~liGlDgvp~-sl~~~f~~---~lpnl~~Lm~--~~s~G~l~S~iPpIT~~~W~sl~TG~~ 61 (471)
T COG3379 3 DRKTLLIGLDGVPP-SLFRQFRD---NLPNLNKLMK--NGSFGKLESGIPPITPAAWPSLFTGYN 61 (471)
T ss_pred cceEEEEEeCCCCH-HHHHHHhh---hhhHHHHHHH--hcccccccccCCCcchhhHHHHhhccC
Confidence 56899999999988 88886554 5999999996 999999999999999998888888754
No 9
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=91.59 E-value=0.14 Score=44.70 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=45.5
Q ss_pred CceEEEEeecCcchhhhhcccCCC----CCCChhHHHHhhcCCceEEEeec---CCCCCCCCceeeeec
Q psy4035 43 AKRVVIFFADGVRSEKFYEVTDRN----SSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAMLA 104 (121)
Q Consensus 43 A~RLVlfv~DGLRAd~ff~~~~~~----~~~~P~Lr~i~~~~~G~~GISht---rvPTeSRpgHVAl~a 104 (121)
-++.|+++.||| ||.=.+. .+. .-+.|.|-.+.. +|..|+-+| -+|-.|-.+|.|||+
T Consensus 7 ~~K~v~ii~DGm-gD~p~~e-~gkTPLe~A~tPnlD~lA~--~G~~Gl~~~v~~G~~pGSD~a~lsllG 71 (395)
T PRK04135 7 DSKIVLLVLDGL-GGLPHPE-NGKTELEAAKTPNLDALAK--ESDLGLLIPVLPGITPGSGPGHLGLFG 71 (395)
T ss_pred CCcEEEEEecCC-CCCCCCC-CCCChhhccCCCChHHHHH--cCCcccceeeCCCCCCCcHHHhhhhhC
Confidence 455889999999 6766553 222 246999999885 899999999 577889999999986
No 10
>PRK13759 arylsulfatase; Provisional
Probab=91.40 E-value=0.2 Score=43.17 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=45.4
Q ss_pred eEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEe-ecCCCCCCCCceeeeecccCCCHHH
Q psy4035 45 RVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIA-HTQVPTETRPGAIAMLAGFYEDPSA 112 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GIS-htrvPTeSRpgHVAl~aGfyED~sA 112 (121)
-+|+|++|-+|+|.+-... +....+|+|.++.. +|..=-+ ++..|. |-|.+-+|+.|.|---.-
T Consensus 8 NIl~I~~Ddlr~d~l~~~G-~~~~~TPnld~La~--~G~~F~nay~~~p~-c~psr~sl~TG~yp~~~g 72 (485)
T PRK13759 8 NIILIMVDQMRGDCLGCNG-NKAVETPNLDMLAS--EGYNFENAYSAVPS-CTPARAALLTGLSQWHHG 72 (485)
T ss_pred CEEEEEECCCCHHHHHhcC-CCcCCCccHHHHHh--cCceeeceecCCCc-chhhHHHHHhcCChhhcC
Confidence 6999999999999774321 22346999999876 5654443 334454 668899999999865443
No 11
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=90.52 E-value=0.18 Score=43.73 Aligned_cols=57 Identities=16% Similarity=0.370 Sum_probs=44.7
Q ss_pred eEEEEeecCcchhhhhcccCCC----CCCChhHHHHhhcCCceEEEeec---CCCCCCCCceeeeec
Q psy4035 45 RVVIFFADGVRSEKFYEVTDRN----SSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAMLA 104 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~~----~~~~P~Lr~i~~~~~G~~GISht---rvPTeSRpgHVAl~a 104 (121)
+.|+++.||| +|.=.+.-.+. .-+.|.|-.+.. +|..|+.+| -+|..|-++|.+||+
T Consensus 4 k~v~~i~DG~-~D~p~~~l~gkTpLe~A~tPnlD~lA~--~g~~Gl~~~v~~G~~pgSd~a~lsl~G 67 (412)
T PRK04024 4 KILLIILDGL-GDRPVKELGGKTPLEAANTPNMDKLAK--EGICGLMDPISPGVRPGSDTAHLAILG 67 (412)
T ss_pred cEEEEEecCC-CCCcccccCCCChhhccCCCChHHHHH--cCCcccceeeCCCCCCCcHHHHhhhhC
Confidence 6899999999 56544321121 347999999886 899999999 678899999999997
No 12
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=90.41 E-value=0.18 Score=43.39 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=43.4
Q ss_pred eEEEEeecCcchhhhhcccCCC----CCCChhHHHHhhcCCceEEEeec---CCCCCCCCceeeeec
Q psy4035 45 RVVIFFADGVRSEKFYEVTDRN----SSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAMLA 104 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~~----~~~~P~Lr~i~~~~~G~~GISht---rvPTeSRpgHVAl~a 104 (121)
+.|+++.||| +|.=.+.-.+. .-+.|+|-.+.. +|..|..++ -+|-.|-+||-+||+
T Consensus 2 k~v~~i~DG~-~D~p~~~l~gkTpLe~A~tP~lD~lA~--~g~~Gl~~~v~~g~~pgSd~a~lsl~G 65 (396)
T TIGR02535 2 KYIILIGDGM-ADWPLEELGGRTPLQVANTPNMDKLAK--RGRCGLLRTVPEGFPPGSDVANMSLLG 65 (396)
T ss_pred CEEEEEecCC-CCCcccccCCCChhhccCCCcHHHHHh--cCCCcceeecCCCCCCCcHHHHHHhhC
Confidence 4799999999 55544321111 347999999886 899999998 577789999999987
No 13
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=90.37 E-value=0.19 Score=43.36 Aligned_cols=57 Identities=19% Similarity=0.407 Sum_probs=43.3
Q ss_pred eEEEEeecCcchhhhhcccCCC----CCCChhHHHHhhcCCceEEEeec---CCCCCCCCceeeeec
Q psy4035 45 RVVIFFADGVRSEKFYEVTDRN----SSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAMLA 104 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~~----~~~~P~Lr~i~~~~~G~~GISht---rvPTeSRpgHVAl~a 104 (121)
+.|+++.||| +|.=.+.-.+. .-+.|+|-.+.. +|..|..++ -+|..|-.+|.+|++
T Consensus 2 k~v~~i~DG~-~D~p~~~l~gkTpLe~A~tP~lD~lA~--~g~~Gl~~~v~~g~~pgSd~a~lsl~G 65 (395)
T PRK04200 2 KYIILIGDGM-ADEPIEELGGKTPLQAAKTPNMDKMAR--EGRVGLAKTVPEGFPPGSDVANMSILG 65 (395)
T ss_pred CEEEEEecCC-CCCcccccCCCCccceeCCCchHHHHh--cCCcccceecCCCCCCCcHHHHHHhhC
Confidence 4799999999 55443311111 347999999886 899999999 577889999999987
No 14
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=88.59 E-value=0.42 Score=41.27 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=42.3
Q ss_pred EEEeecCcchhhhhcccCCC----CCCChhHHHHhhcCCceEEEeec---CCCCCCCCceeeeec
Q psy4035 47 VIFFADGVRSEKFYEVTDRN----SSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAMLA 104 (121)
Q Consensus 47 Vlfv~DGLRAd~ff~~~~~~----~~~~P~Lr~i~~~~~G~~GISht---rvPTeSRpgHVAl~a 104 (121)
|+++.||| +|.=.+.-... .-+.|.|-.+.. +|..|..++ -+|..|-++|.+||+
T Consensus 1 v~~i~DG~-~D~p~~~l~gkTpLe~A~tPnlD~lA~--~g~~Gl~~~v~~G~~pgSd~a~l~llG 62 (396)
T TIGR00306 1 VLIIIDGL-ADRPLEELDGKTPLQVAKTPNMDRLAE--EGICGLMRTIKEGIRPGSDTAHLSILG 62 (396)
T ss_pred CEEEecCC-CCCcccccCCCCchhccCCCChHHHHh--cCCeeeeeeeCCCCCCCchhhhhhhcc
Confidence 57899999 55544321111 346999999886 899999999 678899999999997
No 15
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=85.45 E-value=0.46 Score=35.97 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=39.2
Q ss_pred eEEEEeecCcchhh--hhcccCCCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCCCHHHH
Q psy4035 45 RVVIFFADGVRSEK--FYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAI 113 (121)
Q Consensus 45 RLVlfv~DGLRAd~--ff~~~~~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sAv 113 (121)
-+|+++.|.+|++. ++. +.....|+|.++.. +|.+==.+-..-+-+-|++-+++.|.|-....+
T Consensus 2 NVv~i~~Es~~~~~~~~~~---~~~~~tP~l~~l~~--~g~~f~~~~s~~~~T~~s~~~~ltG~~~~~~~~ 67 (308)
T PF00884_consen 2 NVVLIVLESLRADDLSCYG---YPIPTTPNLDRLAE--NGLRFSNAYSSGPWTSPSRFSMLTGLYPHNSGV 67 (308)
T ss_dssp EEEEEEETT--TTSSGGGT---SSSSSSHHHHHHHH--TSEEESSEE-SSSSHHHHHHHHHHSS-HHHHT-
T ss_pred EEEEEEcccCCCCCCCCCC---CCcccCHHHHHhhh--ccEEEEEEEeccCccccchhhhccccccccccc
Confidence 58999999999983 332 33334999988775 555543332222346777889999998665543
No 16
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=82.31 E-value=0.77 Score=39.81 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=45.3
Q ss_pred eEEEEeecCcchhhhhcccCC-CCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCCCHHH
Q psy4035 45 RVVIFFADGVRSEKFYEVTDR-NSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSA 112 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~-~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sA 112 (121)
-+|+|++|-+|+|.+=... + ....+|.|-++.. +.-.+==..+..|. |-|...||+.|.|--..-
T Consensus 4 NIllI~~Dd~r~d~lg~~G-~~~~~~TPnLD~LA~-eGv~F~nay~~~p~-C~PSRaSllTG~yp~~~G 69 (500)
T TIGR03417 4 NILILMADQLNGTLLPDYG-PARWLHAPNLKRLAA-RSVVFDNAYCASPL-CAPSRASFMSGQLPSRTG 69 (500)
T ss_pred eEEEEEeCCCCccccccCC-CCCcCCCCcHHHHHH-hCceecccccCCCc-cHHHHHHHHHCCCHHhcC
Confidence 5899999999999764321 2 3357999999886 43333333445554 788888999998865443
No 17
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=79.67 E-value=3.4 Score=36.64 Aligned_cols=58 Identities=14% Similarity=0.367 Sum_probs=42.8
Q ss_pred ceEEEEeecCcchhhhhcccCCC----CCCChhHHHHhhcCCceEEEeec---CCCCCCCCceeeeec
Q psy4035 44 KRVVIFFADGVRSEKFYEVTDRN----SSHSPYIRTLLANNEACGGIAHT---QVPTETRPGAIAMLA 104 (121)
Q Consensus 44 ~RLVlfv~DGLRAd~ff~~~~~~----~~~~P~Lr~i~~~~~G~~GISht---rvPTeSRpgHVAl~a 104 (121)
.+.+++|.||| ||.=-+.-++. ..+.|.|-++.+ +|.-|+-+| -++--|-++|.+||+
T Consensus 4 ~killiv~DGl-gDrP~~~l~gkTpLq~A~tPNmD~LA~--~g~~Gl~~~i~pGi~pGSd~ahLsl~G 68 (408)
T COG3635 4 MKILLIVLDGL-GDRPVEELDGKTPLQAAKTPNMDRLAK--EGICGLMDPIKPGIRPGSDTAHLSLFG 68 (408)
T ss_pred ceEEEEEecCC-CCCcccccCCCCchhhcCCCCHHHHHh--cCCcccccccCCCCCCCCCcceeeeec
Confidence 56899999999 55544421111 346899988886 899999998 455668889999996
No 18
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=61.81 E-value=8.9 Score=30.34 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=37.2
Q ss_pred CCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCCCHHHHh
Q psy4035 65 RNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIF 114 (121)
Q Consensus 65 ~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sAv~ 114 (121)
+.+..+--+++++. +.|=.=+. +..|-++-.||+-++.|+|+|-.+|.
T Consensus 93 ~~~~t~e~~~~LL~-~yGPLwv~-~~~P~~~~~~H~~ViTGI~~dg~~i~ 140 (166)
T PF12385_consen 93 NASYTAEGLANLLR-EYGPLWVA-WEAPGDSWVAHASVITGIDGDGDSIH 140 (166)
T ss_pred ccccCHHHHHHHHH-HcCCeEEE-ecCCCCcceeeEEEEEeecCCCCeEE
Confidence 34555667999999 77765565 77787777889999999999876653
No 19
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=61.60 E-value=5.8 Score=35.45 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=37.8
Q ss_pred eEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceE---EEeecCCCCCCCCceeeeecccCCC
Q psy4035 45 RVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACG---GIAHTQVPTETRPGAIAMLAGFYED 109 (121)
Q Consensus 45 RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~---GIShtrvPTeSRpgHVAl~aGfyED 109 (121)
-+|++++|-.|||.+=-.. ......|+|.+.+. ++|.. -+|.. |.+.+..-+|+.|.|.+
T Consensus 225 ~vVlViGES~R~d~~slyG-Y~r~TTP~L~~~la-~~~~~f~n~~S~g---t~T~~Slp~mls~~~~~ 287 (522)
T PRK09598 225 VVVLVIGESARKHNYALYG-YEKPTNPRLSKRLA-THELTLFNATSCA---TYTTASLECILDSSFKN 287 (522)
T ss_pred EEEEEEECCccHhhcccCC-CCCCCChhhhhhcc-cCceEEcceeeCC---CCHHHHHHHHccCCCcc
Confidence 4899999999999873211 22346899988654 44433 23333 33445455888887764
No 20
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=52.57 E-value=26 Score=28.05 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=36.8
Q ss_pred CCCCceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEeecC
Q psy4035 40 IQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQ 90 (121)
Q Consensus 40 ~pPA~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GIShtr 90 (121)
.=|.|..+++-=+||+++.|=.... ...|+|++.+.+..+..+.....
T Consensus 42 ~cpsd~yl~v~Qpgl~~~Df~~~~~---~~~p~L~~~~~~s~s~~~~~~v~ 89 (282)
T PF05827_consen 42 SCPSDAYLFVNQPGLSASDFTDYGS---SAFPNLRRYLYSSSSSLVLPAVE 89 (282)
T ss_pred cCCCceEEEEecccccHhhcccccc---CcchHHHHHHhcCCcceeeeeEe
Confidence 4678888888799999999987332 46899999998456666666553
No 21
>KOG0700|consensus
Probab=51.57 E-value=9.6 Score=33.64 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=23.4
Q ss_pred eEeeeCCccCCCcccccccCCCCCceEEEEeecCc
Q psy4035 20 EIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADGV 54 (121)
Q Consensus 20 dIYF~Spiv~gm~~p~~~~~~pPA~RLVlfv~DGL 54 (121)
+-||++|.++--| ......--|-||.+|+..|||
T Consensus 307 ~~~~t~PyltaeP-~i~~HrL~p~DkFLIlASDGL 340 (390)
T KOG0700|consen 307 PYIGTPPYLTAEP-SITHHKLTPNDKFLILASDGL 340 (390)
T ss_pred CCCCCCCceeccc-eEEEEEcCCCCeEEEEeccch
Confidence 4566666666655 333333456799999999998
No 22
>PF11108 Phage_glycop_gL: Viral glycoprotein L; InterPro: IPR020175 Herpesviruses are enveloped by a lipid bilayer that contains at least a dozen glycoproteins. The virion surface glycoproteins mediate recognition of susceptible cells and promote fusion of the viral envelope with the cell membrane, leading to virus entry. No single glycoprotein associated with the virion membrane has been identified as the fusogen []. Glycoprotein L (gL) forms a non-covalently linked heterodimer with glycoprotein H (gH). This heterodimer is essential for virus-cell and cell-cell fusion since the association of gH and gL is necessary for correct localisation of gH to the virion or cell surface. gH anchoring the heterodimer to the plasma membrane through its transmembrane domain. gL lacks a transmembrane domain and is secreted from cells when expressed in the absence of gH [].; PDB: 3PHF_N.
Probab=49.86 E-value=6.1 Score=29.22 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHhheeEeeeCCcc-CCCcccccccCCCCCceEEE-EeecCcchhhhhc
Q psy4035 11 HVLFFLSIFEIYFKSPII-DNIPVSVKAQGIQLAKRVVI-FFADGVRSEKFYE 61 (121)
Q Consensus 11 Hll~l~SIfdIYF~Spiv-~gm~~p~~~~~~pPA~RLVl-fv~DGLRAd~ff~ 61 (121)
|+..+++|-||||.+|-- .|...-|-...+.-++..++ .-+.|.---+||.
T Consensus 12 ~~p~~~~I~~Iyl~~p~tC~g~~VA~l~~~~~~~~~~t~~~CaNGFnlmSFll 64 (111)
T PF11108_consen 12 HLPSLFSISSIYLTSPSTCNGFSVAQLNYVRQKTNQSTVEVCANGFNLMSFLL 64 (111)
T ss_dssp S---TTT--EEEE--TTSSSS--EEEEEEE-TTTTSSEEEEEEEHHHHHHHHH
T ss_pred CCcchhhhhheeecCcccCCCeEEEEEeeeccCCCCEEEEEecCcchHHHHHH
Confidence 567899999999999964 44442121112233445554 8889988888886
No 23
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=48.65 E-value=6.2 Score=32.40 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=40.6
Q ss_pred CCceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCCCHHHHhh
Q psy4035 42 LAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIFK 115 (121)
Q Consensus 42 PA~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sAv~~ 115 (121)
.|+|+|++.+=|+.|++ ..|..|+ .+|+|.= ..+|=-++=..+|+.||..+-.
T Consensus 11 ~a~~ivvltGAGiSa~s----------GIpdFR~----~~Gl~~~-------~~~p~~l~s~~~f~~~p~~~~~ 63 (250)
T COG0846 11 EAKRIVVLTGAGISAES----------GIPDFRS----KDGLWSD-------KYDPEDLASPSGFRRDPELVWD 63 (250)
T ss_pred hcCcEEEEeCCcccccc----------CCCcccC----CCCCCCC-------CCCHHHHhCHHHHhhCHHHHHH
Confidence 39999999999998865 4666663 7898863 5666667777888888877643
No 24
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=43.21 E-value=18 Score=33.61 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhheeEeeeCCcc--------------------CCCcccc----------------------cccCCC
Q psy4035 4 FIVLFFIHVLFFLSIFEIYFKSPII--------------------DNIPVSV----------------------KAQGIQ 41 (121)
Q Consensus 4 ~~~~v~~Hll~l~SIfdIYF~Spiv--------------------~gm~~p~----------------------~~~~~p 41 (121)
+...+.-|+++.|+ |-||-+||. ||+-+-| +...+|
T Consensus 178 ~~sfiashlIYaWa--DA~~YrPItmqr~n~PLsYPmTArsFlekhGllD~qey~r~l~eqg~pda~~l~YPl~pL~~~~ 255 (600)
T COG3083 178 FCSFIASHLIYAWA--DANFYRPITMQRANFPLSYPMTARSFLEKHGLLDAQEYRRRLVEQGNPDASSLNYPLRPLTISD 255 (600)
T ss_pred HHHHHHHHHHHhhh--hhcccCccchhhccCCcccchhHHHHHHHcCCCchHHHHHHHHHcCCCCcccccCCCCCceecC
Confidence 44566778888887 778888875 4443111 113367
Q ss_pred CCce--EEEEeecCcchhhhhc
Q psy4035 42 LAKR--VVIFFADGVRSEKFYE 61 (121)
Q Consensus 42 PA~R--LVlfv~DGLRAd~ff~ 61 (121)
||.+ ++++++||||.|.+=+
T Consensus 256 ~a~~~NillI~vdglR~d~l~~ 277 (600)
T COG3083 256 PAHGPNILLITVDGLRYDALDE 277 (600)
T ss_pred CCCCCCEEEEEeccccccccCh
Confidence 7776 6999999999999955
No 25
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=39.19 E-value=28 Score=33.24 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=32.0
Q ss_pred ceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcC-CceEEEee--cCCCCCCCCceeeee
Q psy4035 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANN-EACGGIAH--TQVPTETRPGAIAML 103 (121)
Q Consensus 44 ~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~-~G~~GISh--trvPTeSRpgHVAl~ 103 (121)
+|+++|+.||||.|-.=+. .+.+.++ +..+-+++ +-.||.+.-|--||+
T Consensus 457 ~rv~vii~DaLRyeva~eL-----------~~~L~~~~~~~~~l~~~~s~LPS~T~~GMAALL 508 (844)
T TIGR02687 457 KKVFVIISDALRYEAAEEL-----------FEQLNKETRFIAELSSQLGVLPSYTQLGMAALL 508 (844)
T ss_pred CcEEEEEEccccHHHHHHH-----------HHHhhhccCceEEeeeeeecCCchhhcchHhhC
Confidence 6899999999999877662 2222201 23333333 258888888877777
No 26
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=29.24 E-value=37 Score=28.07 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=19.0
Q ss_pred ceEEEEeecCcchhhhhcccCCCCCCChhHHHHhh
Q psy4035 44 KRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (121)
Q Consensus 44 ~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~ 78 (121)
--+.|+++|||.|...=+ | ..|+|..+..
T Consensus 103 ~Dv~iViaDGLSa~Av~~---n---~~~~l~~L~~ 131 (237)
T PF05985_consen 103 PDVQIVIADGLSARAVEA---N---AAPLLPALLP 131 (237)
T ss_dssp -SEEEEEE-TT-HHHHHT---T---HHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHH---h---HHHHHHHHHH
Confidence 568999999999999833 3 4666666554
No 27
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=29.04 E-value=47 Score=28.58 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=36.7
Q ss_pred CCCCceEEEEeecCcchhh-----hhcccCCCCCCChhHHHHhhcCCceEEEeec----CCCCCCCCceeeeecccC
Q psy4035 40 IQLAKRVVIFFADGVRSEK-----FYEVTDRNSSHSPYIRTLLANNEACGGIAHT----QVPTETRPGAIAMLAGFY 107 (121)
Q Consensus 40 ~pPA~RLVlfv~DGLRAd~-----ff~~~~~~~~~~P~Lr~i~~~~~G~~GISht----rvPTeSRpgHVAl~aGfy 107 (121)
+.+||-+++|++||+-... +|....++. ..-+-.+. +--.+|.+.| ...|.|=|+-.|+..|.+
T Consensus 3 ~~~~kNVIl~igDGmg~~~~taar~~~~~~~~~---~~~~l~~d-~~~~~G~~~T~~~~~~vtDSAa~aTA~~tG~K 75 (384)
T cd00016 3 KKKAKNVILFIGDGMGVSTITAARIYKGQENGA---EEGKLLFD-DFPLTGLSKTYSVDSQVTDSAATATAYATGVK 75 (384)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCcccc---cccccchh-ccchhheeecccCCCCccccHHHHhHhhhccc
Confidence 4568999999999997533 333221111 11111223 4456677777 344567777777776654
No 28
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=26.90 E-value=45 Score=29.22 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.6
Q ss_pred CCceEEEeecCCCCCCCC
Q psy4035 80 NEACGGIAHTQVPTETRP 97 (121)
Q Consensus 80 ~~G~~GIShtrvPTeSRp 97 (121)
-+|..++-|+|-||+|.|
T Consensus 200 ~~s~~~l~HsRFSTNT~p 217 (371)
T COG0067 200 YKSAIALVHTRFSTNTFP 217 (371)
T ss_pred hceeEEEEEeccCCCCCC
Confidence 379999999999999987
No 29
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.88 E-value=34 Score=28.10 Aligned_cols=48 Identities=17% Similarity=0.413 Sum_probs=32.5
Q ss_pred eEeeeCCc--cCCCcccccccCCCCCceEEEEeecCcchhhhhcccCCCCCCChhHHHHhh
Q psy4035 20 EIYFKSPI--IDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (121)
Q Consensus 20 dIYF~Spi--v~gm~~p~~~~~~pPA~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~ 78 (121)
||||.||+ +.|+..|.... +=-+-|+|+-.+| +|.|.. +.-+|.+++.
T Consensus 149 Dv~ynsP~dylpg~~dp~~l~-rlr~~~~vfc~G~---e~~~L~-------~~~~L~~~l~ 198 (227)
T COG4947 149 DVYYNSPSDYLPGLADPFRLE-RLRRIDMVFCIGD---EDPFLD-------NNQHLSRLLS 198 (227)
T ss_pred ceeecChhhhccCCcChHHHH-HHhhccEEEEecC---cccccc-------chHHHHHHhc
Confidence 79999997 77776444332 2226678888887 676665 4567777776
No 30
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=26.25 E-value=1.6e+02 Score=19.72 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=33.1
Q ss_pred CCceEEEEeecC-cchhhhhcccCCCCCCChh-HHHHhhcCCceEEEeecCCCCCCCC
Q psy4035 42 LAKRVVIFFADG-VRSEKFYEVTDRNSSHSPY-IRTLLANNEACGGIAHTQVPTETRP 97 (121)
Q Consensus 42 PA~RLVlfv~DG-LRAd~ff~~~~~~~~~~P~-Lr~i~~~~~G~~GIShtrvPTeSRp 97 (121)
|-....++.+|+ .|........+..-...|. ++...+.+...+|+-|++.=...+|
T Consensus 15 p~E~~gll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~i~HsHP~g~~~P 72 (101)
T cd08059 15 PDEFCGFLSGSKDNVMDELIFLPFVSGSVSAVIDLAALEIGMKVVGLVHSHPSGSCRP 72 (101)
T ss_pred ChhhheeeecCCCCeEEEEEeCCCcCCccChHHHHHHhhCCCcEEEEEecCcCCCCCC
Confidence 445555555543 2544444332222224566 8888884568999999986555555
No 31
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=26.25 E-value=55 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=17.8
Q ss_pred eCCccCCCcccccccCCCCCceEEEEeecCc
Q psy4035 24 KSPIIDNIPVSVKAQGIQLAKRVVIFFADGV 54 (121)
Q Consensus 24 ~Spiv~gm~~p~~~~~~pPA~RLVlfv~DGL 54 (121)
|.|++.|.+ +.-=|..|||||| ||.
T Consensus 41 q~~~lpg~p-----D~~~~~~klaIfV-DGc 65 (117)
T TIGR00632 41 QDASLPGTP-----DIVFDEYRCVIFI-HGC 65 (117)
T ss_pred ecCCCCCcc-----cEEecCCCEEEEE-ccc
Confidence 456665554 6667889999998 775
No 32
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=24.58 E-value=33 Score=28.87 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=22.3
Q ss_pred CceEEEEeecCcchhhhhcccCCCCCCChhHHHHhh
Q psy4035 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLA 78 (121)
Q Consensus 43 A~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~ 78 (121)
.--+.|+++|||.|...=+ | ..|+|..+..
T Consensus 109 ~~Dv~iViaDGLSa~Av~~---n---a~~~l~al~~ 138 (260)
T PRK05465 109 NPDVQIVVADGLSALAVEA---N---AEPLLPALLA 138 (260)
T ss_pred CCcEEEEEcCCCCHHHHHH---h---HHHHHHHHHH
Confidence 3489999999999998875 3 4566665554
No 33
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=24.10 E-value=73 Score=19.05 Aligned_cols=14 Identities=14% Similarity=0.384 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHH
Q psy4035 3 VFIVLFFIHVLFFL 16 (121)
Q Consensus 3 ~~~~~v~~Hll~l~ 16 (121)
++++|+++|++.+.
T Consensus 21 ~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 21 FAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45789999998764
No 34
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=23.97 E-value=85 Score=28.58 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=32.9
Q ss_pred ceEE-EEeecCcchhhh--hcccCCCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCC
Q psy4035 44 KRVV-IFFADGVRSEKF--YEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYE 108 (121)
Q Consensus 44 ~RLV-lfv~DGLRAd~f--f~~~~~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyE 108 (121)
+++| ++++|-+|||.+ ++.+. ...|+|.+ .++.+=-+|....|.++.+--.||.+..+
T Consensus 247 ~~~vVlViGESaRad~~slyGY~r---~TtP~L~~----~~~~~~f~~~S~gt~T~~Slp~mfs~~~~ 307 (558)
T PRK11560 247 DTYVVFIIGETTRWDHMGILGYER---NTTPKLAQ----EKNLAAFRGYSCDTATKLSLRCMFVREGG 307 (558)
T ss_pred CCEEEEEEEcccCHhhcccCCCCC---CCCcchHh----cCCEEEecCccCCccchhhhHHHhcCCCc
Confidence 4444 699999999966 44332 35788876 23444334433344444444446665543
No 35
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=23.15 E-value=44 Score=26.93 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=31.5
Q ss_pred CceEEEEeecCcchhhhhcccCCCCCCChhHHHHhhcCCceEEEeecCCCCCCCCceeeeecccCCCHHHHh
Q psy4035 43 AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAIF 114 (121)
Q Consensus 43 A~RLVlfv~DGLRAd~ff~~~~~~~~~~P~Lr~i~~~~~G~~GIShtrvPTeSRpgHVAl~aGfyED~sAv~ 114 (121)
|+|+|+|.+=|+.+++ ..|..|+ .+|.|- +. +|=-++-...|.+||..+-
T Consensus 4 ~~~ivvlTGAGiS~~S----------GIPdFR~----~~Glw~----~~----~~~~~~~~~~f~~~p~~~~ 53 (242)
T PTZ00408 4 CRCITILTGAGISAES----------GISTFRD----GNGLWE----NH----RVEDVATPDAFLRNPALVQ 53 (242)
T ss_pred CCeEEEEeCcchhhhh----------CCCcccC----CCCCCC----CC----ChhhcCCHHHHHhCHHHHH
Confidence 7899999999998875 3555554 457772 11 2222344566777776543
No 36
>PRK10518 alkaline phosphatase; Provisional
Probab=22.45 E-value=67 Score=28.95 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.1
Q ss_pred CCCCceEEEEeecCcchh
Q psy4035 40 IQLAKRVVIFFADGVRSE 57 (121)
Q Consensus 40 ~pPA~RLVlfv~DGLRAd 57 (121)
..+||-+++|++||+-..
T Consensus 66 ~~~aKNVIlfIGDGMg~s 83 (476)
T PRK10518 66 NKPAKNVILLIGDGMGDS 83 (476)
T ss_pred cCCCceEEEEEeCCCCHH
Confidence 456999999999999753
No 37
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=21.98 E-value=61 Score=27.72 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHhh
Q psy4035 3 VFIVLFFIHVLFFLSI 18 (121)
Q Consensus 3 ~~~~~v~~Hll~l~SI 18 (121)
-+++++++|++++.-+
T Consensus 3 a~~lSv~lHvlLi~lL 18 (346)
T TIGR02794 3 AFLLSLLLHILLLGLL 18 (346)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4778999998877544
No 38
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=21.93 E-value=73 Score=23.15 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.3
Q ss_pred CCCCceEEEEeecCcc
Q psy4035 40 IQLAKRVVIFFADGVR 55 (121)
Q Consensus 40 ~pPA~RLVlfv~DGLR 55 (121)
.+.+++.|+++.||--
T Consensus 105 r~~~~~~villTDG~~ 120 (186)
T cd01471 105 RENAPQLVIIMTDGIP 120 (186)
T ss_pred cccCceEEEEEccCCC
Confidence 4668899999999973
No 39
>PF12941 HCV_NS5a_C: HCV NS5a protein C-terminal region; InterPro: IPR024350 This entry represents the C-terminal region of the Hepatitus C virus, NS5a protein. The molecular function of the non-structural 5a protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR [, ].; PDB: 3M5O_C.
Probab=21.89 E-value=30 Score=28.89 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=0.0
Q ss_pred eeCCccCCCcc-ccc-ccCCCC-CceEEEE
Q psy4035 23 FKSPIIDNIPV-SVK-AQGIQL-AKRVVIF 49 (121)
Q Consensus 23 F~Spiv~gm~~-p~~-~~~~pP-A~RLVlf 49 (121)
|+-|+|||-.. |.+ ....|| -||.|+.
T Consensus 129 Y~PPvVhGCaLPP~~~pPvPPPRRKRtVvL 158 (244)
T PF12941_consen 129 YEPPVVHGCALPPPKAPPVPPPRRKRTVVL 158 (244)
T ss_dssp ------------------------------
T ss_pred CCCCcccCCCCCCCCCCCCCCCcccccccc
Confidence 67899999432 443 344555 6676665
No 40
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=21.60 E-value=51 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=14.3
Q ss_pred CCCCceEEEEeecCcchhh
Q psy4035 40 IQLAKRVVIFFADGVRSEK 58 (121)
Q Consensus 40 ~pPA~RLVlfv~DGLRAd~ 58 (121)
.-|.+|+|.+++||-=.-.
T Consensus 43 a~p~~~vv~i~GDG~f~~~ 61 (153)
T PF02775_consen 43 ARPDRPVVAITGDGSFLMS 61 (153)
T ss_dssp HSTTSEEEEEEEHHHHHHH
T ss_pred hcCcceeEEecCCcceeec
Confidence 4568999999999953333
No 41
>PF15161 Neuropep_like: Neuropeptide-like
Probab=21.08 E-value=49 Score=22.42 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.5
Q ss_pred ecCCCCCCCCce
Q psy4035 88 HTQVPTETRPGA 99 (121)
Q Consensus 88 htrvPTeSRpgH 99 (121)
-+-+|.||||+.
T Consensus 6 gs~iPaesRPCV 17 (65)
T PF15161_consen 6 GSVIPAESRPCV 17 (65)
T ss_pred CCcccCCCCCch
Confidence 356999999973
No 42
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.90 E-value=1e+02 Score=21.70 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHhheeEeee
Q psy4035 2 NVFIVLFFIHVLFFLSIFEIYFK 24 (121)
Q Consensus 2 ~~~~~~v~~Hll~l~SIfdIYF~ 24 (121)
++.+++++.=++++|.|+ ||.
T Consensus 65 li~lls~v~IlVily~Iy--YFV 85 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIY--YFV 85 (101)
T ss_pred HHHHHHHHHHHHHHhhhe--EEE
Confidence 455677777777777766 664
No 43
>KOG2126|consensus
Probab=20.71 E-value=63 Score=31.54 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.6
Q ss_pred CceEEEEeecCcchh
Q psy4035 43 AKRVVIFFADGVRSE 57 (121)
Q Consensus 43 A~RLVlfv~DGLRAd 57 (121)
+.+.|+.+.|+||-|
T Consensus 58 ~ssvvilliDaLryd 72 (895)
T KOG2126|consen 58 YSSVVILLIDALRYD 72 (895)
T ss_pred ccceEEEEeehhhhc
Confidence 566999999999999
No 44
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=20.12 E-value=64 Score=29.93 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.9
Q ss_pred CCCCCceEEEEeecCc
Q psy4035 39 GIQLAKRVVIFFADGV 54 (121)
Q Consensus 39 ~~pPA~RLVlfv~DGL 54 (121)
...|-+|++||++||-
T Consensus 425 ~A~~drR~IL~iGDGs 440 (557)
T COG3961 425 LAAPDRRVILFIGDGS 440 (557)
T ss_pred hcCCCccEEEEEcCch
Confidence 4678899999999995
Done!