RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4035
(121 letters)
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 42.5 bits (100), Expect = 1e-05
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 10 IHVLFFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSH 69
+ V+F SI +++F + + + S +A K++V+ DG+R +V DR +
Sbjct: 6 LLVVFLFSILDLFFAADVP-ILSQSYQAATPAPKKKLVLISIDGLR----ADVLDRKAGI 60
Query: 70 SPYIRTLLANNEACGGIAHTQVPTETRPGAIAMLAGFYEDPSAI 113
P++ +L N + PT TRP ++ G Y D I
Sbjct: 61 LPFLSSLAENGVH-VAELISVFPTTTRPRHTTLITGSYPDEHGI 103
>gnl|CDD|177006 CHL00066, psbH, photosystem II protein H.
Length = 73
Score = 36.2 bits (84), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 1 MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVS 34
M V + LF + F I EIY S ++D I VS
Sbjct: 43 MGVAMALFAV---FLSIILEIYNSSVLLDGISVS 73
>gnl|CDD|179451 PRK02624, psbH, photosystem II reaction center protein H;
Provisional.
Length = 64
Score = 32.4 bits (74), Expect = 0.009
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKA 37
M VF+VLF + F L I +IY +S ++ V
Sbjct: 31 MAVFMVLFLV---FLLIILQIYNQSLLLQGFSVDWNG 64
>gnl|CDD|177686 PLN00055, PLN00055, photosystem II reaction center protein H;
Provisional.
Length = 73
Score = 32.1 bits (73), Expect = 0.015
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 1 MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVS 34
M V + LF + F I EIY S ++D I V+
Sbjct: 43 MGVAMALFAV---FLSIILEIYNSSVLLDGISVN 73
>gnl|CDD|217375 pfam03117, Herpes_UL49_1, UL49 family. Members of this family,
found in several herpesviruses, include EBV BFRF2 and
other UL49 proteins (e.g. HCMVA UL49, HSV6 U33). There
are eight conserved cysteine residues in this alignment,
all lying towards the C-terminus. Their function is
unknown.
Length = 234
Score = 31.1 bits (71), Expect = 0.079
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 54 VRSEKFYEVTDRNSSHSPYIRTLLANNEACG 84
+R E YEV P IR ++ANN AC
Sbjct: 153 LRVEPLYEVVSAGVGGRPRIRAVIANNAACA 183
>gnl|CDD|189695 pfam00737, PsbH, Photosystem II 10 kDa phosphoprotein. This
protein is phosphorylated in a light dependent
reaction.
Length = 52
Score = 26.5 bits (59), Expect = 1.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 1 MNVFIVLFFIHVLFFLSIFEIYFKSPII 28
M VF+ LF + F L I EIY S ++
Sbjct: 28 MGVFMALFAV---FLLIILEIYNSSLLL 52
>gnl|CDD|226982 COG4635, HemG, Flavodoxin [Energy production and conversion /
Coenzyme metabolism].
Length = 175
Score = 26.3 bits (58), Expect = 3.7
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 17/76 (22%)
Query: 35 VKAQGIQLAKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTE 94
VK L+ + FF+ + + K + NS Y+R L +
Sbjct: 70 VKKHAEALSTKPSAFFSVNLTARKEKRTPETNS----YVRKFLMK-------------SP 112
Query: 95 TRPGAIAMLAGFYEDP 110
+P AIA+ G P
Sbjct: 113 WQPVAIAVFGGALRYP 128
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 26.2 bits (58), Expect = 4.6
Identities = 8/34 (23%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 81 EACGGIAHTQVPTETR-PGAIAMLAGFYEDPSAI 113
G T P LA Y DP +
Sbjct: 270 RFIGLKPPTSFQDILTDPELAKKLAELYGDPDDV 303
>gnl|CDD|218876 pfam06054, CoiA, Competence protein CoiA-like family. Many of the
members of this family are described as transcription
factors. CoiA falls within a competence-specific operon
in Streptococcus. CoiA is an uncharacterized protein.
Length = 348
Score = 26.3 bits (58), Expect = 4.8
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 8 FFIHVLFFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFADG--VRSEKFYE 61
I +F + +KS + + P+S + + +R + + R EK+YE
Sbjct: 195 IPIGYGKLEELFNLPYKSQKLLSFPLSGFVKLRERIRRQLYYDNPKWLNRQEKYYE 250
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 26.0 bits (57), Expect = 5.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 23 FKSPIIDNIPVSVKAQGIQLAKRVVIFFADGVRSEKFY-EVTDRNSSHS 70
F I +N+ ++AQGI+ K + +R + EV DR SH+
Sbjct: 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
>gnl|CDD|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain
of mammalian glycerophosphodiester phosphodiesterase
GDE4 and similar proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) present in mammalian GDE4 (also known as
glycerophosphodiester phosphodiesterase
domain-containing protein 1 (GDPD1)) and similar
proteins. Mammalian GDE4 is a transmembrane protein
whose cellular function has not yet been elucidated. It
is expressed widely, including in placenta, liver,
kidney, pancreas, spleen, thymus, ovary, small intestine
and peripheral blood leukocytes. It is also expressed in
the growth cones in neuroblastoma Neuro2a cells, which
suggests GDE4 may play some distinct role from other
members of the GDE family.
Length = 300
Score = 25.6 bits (57), Expect = 6.5
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 4 FIVLFFIHVLFFLSIFEIYFKSPIIDNIPVSVKAQGIQLAKRVVIFFAD 52
++L++ +L F+ I E + + P+ + + + R V+F D
Sbjct: 197 LLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFPKSMSRLNRFVLFLID 245
>gnl|CDD|217900 pfam04109, APG9, Autophagy protein Apg9. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg9 plays a direct role in the
formation of the cytoplasm to vacuole targeting and
autophagic vesicles, possibly serving as a marker for a
specialised compartment essential for these
vesicle-mediated alternative targeting pathways.
Length = 365
Score = 25.6 bits (57), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 4 FIVLFFIHVLFFLSIFEIYFKSP 26
FIV++F+ + +F FE Y K+P
Sbjct: 129 FIVIYFV-LYYFFRYFEEYKKNP 150
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 25.2 bits (56), Expect = 9.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 1 MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPV 33
I++FF+H + LS I D +PV
Sbjct: 118 RKKLILIFFLHYIPSLSQLLIVIFLVPTDFLPV 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.424
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,313,454
Number of extensions: 550777
Number of successful extensions: 1019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 44
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)