RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4035
         (121 letters)



>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
           fluorescens [TaxId: 294]}
          Length = 406

 Score = 40.3 bits (92), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 43  AKRVVIFFADGVRSEKFYEVTDRNSSHSPYIRTLLANNEACGGIAHTQVPTETRPGAIAM 102
           +   ++   DG   E   +        +P++  L              VP+ T P  +++
Sbjct: 15  SAPTIVICVDGCEQEYINQAIQAG--QAPFLAELT--GFGTVLTGDCVVPSFTNPNNLSI 70

Query: 103 LAGFYEDPSAIF 114
           + G       I 
Sbjct: 71  VTGAPPSVHGIC 82


>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein
          H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 64

 Score = 34.4 bits (79), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 1  MNVFIVLFFIHVLFFLSIFEIYFKSPIIDNIPVS 34
          M VF+ LF +   F L I EIY  + I+D + VS
Sbjct: 30 MAVFMGLFLV---FLLIILEIYNSTLILDGVNVS 60


>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
           {Acidianus ambivalens [TaxId: 2283]}
          Length = 307

 Score = 24.1 bits (52), Expect = 6.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 107 YEDPSAIFKLCSSCI 121
            ++ S +F+LC SC 
Sbjct: 90  RQNWSYLFRLCYSCA 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,738
Number of extensions: 18210
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 6
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)