BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4036
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06185|ATP5I_MOUSE ATP synthase subunit e, mitochondrial OS=Mus musculus GN=Atp5i
PE=1 SV=2
Length = 71
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSL 35
PPV VSPLIKF R++ L G+ YG R S L
Sbjct: 3 PPVQVSPLIKFGRYSALIIGMAYGAKRYSYL 33
>sp|P29419|ATP5I_RAT ATP synthase subunit e, mitochondrial OS=Rattus norvegicus
GN=Atp5i PE=1 SV=3
Length = 71
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSL 35
PPV VSPLIKF R++ L G+ YG R S L
Sbjct: 3 PPVQVSPLIKFGRYSALILGMAYGAKRYSYL 33
>sp|Q5RBW2|ATP5I_PONAB ATP synthase subunit e, mitochondrial OS=Pongo abelii GN=ATP5I
PE=3 SV=3
Length = 71
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLE 36
PPV VSPLIK R++ L G+ YG +R + L+
Sbjct: 3 PPVQVSPLIKLGRYSALFLGVAYGATRYNYLK 34
>sp|P56385|ATP5I_HUMAN ATP synthase subunit e, mitochondrial OS=Homo sapiens GN=ATP5I
PE=1 SV=2
Length = 69
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLE 36
PPV VSPLIK R++ L G+ YG +R + L+
Sbjct: 3 PPVQVSPLIKLGRYSALFLGVAYGATRYNYLK 34
>sp|P12633|ATP5I_CRILO ATP synthase subunit e, mitochondrial OS=Cricetulus longicaudatus
GN=ATP5I PE=2 SV=3
Length = 69
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLE 36
PPV VSPLIK R++ L G+ YG R S L+
Sbjct: 3 PPVQVSPLIKLGRYSALVLGMAYGAKRYSYLK 34
>sp|Q9MYT8|ATP5I_PIG ATP synthase subunit e, mitochondrial OS=Sus scrofa GN=ATP5I PE=3
SV=4
Length = 71
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSL 35
PPV VSPLIK R++ L G+ YG R + L
Sbjct: 3 PPVQVSPLIKLGRYSALFLGVAYGAKRYNYL 33
>sp|Q00361|ATP5I_BOVIN ATP synthase subunit e, mitochondrial OS=Bos taurus GN=ATP5I PE=1
SV=2
Length = 71
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSL 35
PPV VSPLIK R++ L G+ YG R + L
Sbjct: 3 PPVQVSPLIKLGRYSALFLGMAYGAKRYNYL 33
>sp|Q567U6|CCD93_HUMAN Coiled-coil domain-containing protein 93 OS=Homo sapiens GN=CCDC93
PE=1 SV=2
Length = 631
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 19 TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKK-RANEVSRI 70
T+L G YG SRQS +EK E+K + A A + A EE + RA E RI
Sbjct: 201 TLLEYGRRYGFSRQSKMEKAEDKKTALPAGLSATEKADAHEEDELRAAEEQRI 253
>sp|A6Q747|SYA_SULNB Alanine--tRNA ligase OS=Sulfurovum sp. (strain NBC37-1) GN=alaS
PE=3 SV=1
Length = 857
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 18 WTMLSAGILYG-----VSRQSSLEKKEEKLRVIRAQKKAIKDAKLAE---------EKKR 63
W +L Y V + LE + EKL + K D L+E E K
Sbjct: 484 WVLLEKTPFYAESGGQVGDKGKLEIRNEKLEIRVLDTKKFLDMNLSEVEGKLSVGDEVKA 543
Query: 64 ANEVSRISLKKNHVAIFIIHQDLQVFM 90
+ SR+ ++K+H A ++H L+ +
Sbjct: 544 VVDPSRVEIEKHHSATHLLHAGLRAIL 570
>sp|Q9LVR6|DAR3_ARATH Protein DA1-related 3 OS=Arabidopsis thaliana GN=DAR3 PE=2 SV=2
Length = 450
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 36 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANE 66
++++EK+ + R +++++K AK AEEK+R E
Sbjct: 7 QEEDEKIEIERVKEESLKLAKQAEEKRRLEE 37
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,220,497
Number of Sequences: 539616
Number of extensions: 895674
Number of successful extensions: 6028
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5877
Number of HSP's gapped (non-prelim): 152
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)