Query psy4036
Match_columns 93
No_of_seqs 102 out of 169
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 23:44:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05680 ATP-synt_E: ATP synth 100.0 5.6E-30 1.2E-34 172.0 8.1 71 5-75 2-75 (86)
2 KOG4326|consensus 99.9 2.3E-27 4.9E-32 158.5 8.7 74 1-75 1-74 (81)
3 PRK11677 hypothetical protein; 83.1 5 0.00011 29.0 5.8 44 19-62 8-51 (134)
4 PF06295 DUF1043: Protein of u 79.4 8.8 0.00019 26.9 5.9 32 19-50 4-35 (128)
5 PRK09174 F0F1 ATP synthase sub 78.8 15 0.00032 27.7 7.3 31 5-35 45-75 (204)
6 PRK06569 F0F1 ATP synthase sub 78.5 18 0.00039 26.8 7.5 33 5-37 2-34 (155)
7 PF06305 DUF1049: Protein of u 74.8 16 0.00034 22.0 5.5 10 20-29 27-36 (68)
8 PRK13454 F0F1 ATP synthase sub 69.1 33 0.00071 25.1 7.0 31 5-35 23-53 (181)
9 KOG2629|consensus 68.0 24 0.00051 29.1 6.5 18 19-36 90-109 (300)
10 PF02255 PTS_IIA: PTS system, 63.3 12 0.00026 25.3 3.4 57 28-84 12-73 (96)
11 COG5454 Predicted secreted pro 61.3 15 0.00032 25.4 3.6 31 5-35 43-76 (89)
12 PF04977 DivIC: Septum formati 59.9 36 0.00079 20.6 6.5 53 22-74 9-62 (80)
13 PRK10454 PTS system N,N'-diace 58.7 19 0.00041 25.4 3.9 57 28-84 29-90 (115)
14 TIGR01592 holin_SPP1 holin, SP 58.5 15 0.00033 24.4 3.2 27 20-46 44-70 (75)
15 COG3105 Uncharacterized protei 57.2 77 0.0017 23.5 7.2 39 15-53 9-47 (138)
16 PF03648 Glyco_hydro_67N: Glyc 57.2 6.1 0.00013 26.8 1.2 10 23-32 113-122 (122)
17 PF07047 OPA3: Optic atrophy 3 55.8 58 0.0013 22.9 6.0 13 23-35 89-101 (134)
18 PF14880 COX14: Cytochrome oxi 55.0 24 0.00053 21.7 3.6 29 22-50 27-55 (59)
19 PRK09173 F0F1 ATP synthase sub 52.0 80 0.0017 22.1 6.3 16 18-33 6-21 (159)
20 TIGR00823 EIIA-LAC phosphotran 51.8 31 0.00067 23.5 4.0 57 28-84 15-76 (99)
21 PF07946 DUF1682: Protein of u 50.3 50 0.0011 26.2 5.5 13 14-26 232-244 (321)
22 PF07271 Cytadhesin_P30: Cytad 49.8 52 0.0011 26.9 5.5 15 19-33 82-96 (279)
23 cd00215 PTS_IIA_lac PTS_IIA, P 49.2 37 0.00081 23.0 4.0 57 28-84 13-74 (97)
24 PRK09591 celC cellobiose phosp 48.4 41 0.00088 23.1 4.2 57 28-84 18-79 (104)
25 PF00430 ATP-synt_B: ATP synth 47.3 80 0.0017 20.7 6.4 20 18-37 4-23 (132)
26 PF04688 Phage_holin: Phage ly 46.5 64 0.0014 19.4 4.4 40 5-44 3-44 (47)
27 COG3944 Capsular polysaccharid 45.2 42 0.0009 26.7 4.3 34 5-38 164-200 (226)
28 PF13807 GNVR: G-rich domain o 44.9 39 0.00084 21.4 3.4 13 6-18 53-65 (82)
29 PRK14472 F0F1 ATP synthase sub 44.4 1.2E+02 0.0025 21.8 6.4 19 18-36 23-41 (175)
30 PF12072 DUF3552: Domain of un 42.6 1.4E+02 0.003 22.1 6.5 17 19-35 8-24 (201)
31 PF08285 DPM3: Dolichol-phosph 42.5 56 0.0012 22.1 4.1 41 14-62 47-87 (91)
32 PF10766 DUF2592: Protein of u 41.8 20 0.00043 21.6 1.6 17 15-31 12-28 (41)
33 PRK12705 hypothetical protein; 41.8 1.4E+02 0.0031 25.9 7.3 27 12-38 7-33 (508)
34 PF14276 DUF4363: Domain of un 40.7 1.1E+02 0.0024 20.4 6.4 18 74-91 62-79 (121)
35 COG1447 CelC Phosphotransferas 40.5 34 0.00073 24.1 2.8 45 39-83 29-77 (105)
36 PF09731 Mitofilin: Mitochondr 39.5 27 0.00057 29.3 2.5 19 11-29 3-21 (582)
37 PRK10019 nickel/cobalt efflux 37.0 27 0.00058 28.0 2.1 17 16-32 12-28 (279)
38 COG1121 ZnuC ABC-type Mn/Zn tr 37.0 20 0.00042 28.4 1.3 22 70-91 183-204 (254)
39 PF11382 DUF3186: Protein of u 36.0 80 0.0017 25.1 4.6 14 18-31 15-28 (308)
40 PF03824 NicO: High-affinity n 35.9 28 0.00062 26.5 2.0 15 18-32 2-16 (282)
41 PF10883 DUF2681: Protein of u 35.8 1.4E+02 0.003 20.2 6.2 30 47-76 43-73 (87)
42 KOG4841|consensus 35.3 68 0.0015 22.4 3.6 17 46-62 75-91 (95)
43 PHA02047 phage lambda Rz1-like 34.7 1.7E+02 0.0036 20.7 6.9 21 16-36 9-30 (101)
44 PLN02453 complex I subunit 34.3 17 0.00038 25.8 0.6 22 19-40 72-93 (105)
45 PF04977 DivIC: Septum formati 34.2 1.1E+02 0.0023 18.4 4.8 41 21-64 5-45 (80)
46 COG3879 Uncharacterized protei 33.1 1.2E+02 0.0026 24.3 5.1 24 8-31 10-35 (247)
47 COG0711 AtpF F0F1-type ATP syn 32.6 1.9E+02 0.0041 20.7 7.1 22 16-37 9-30 (161)
48 COG1436 NtpG Archaeal/vacuolar 32.0 22 0.00047 24.6 0.8 22 67-88 37-58 (104)
49 PF15186 TEX13: Testis-express 30.9 2.3E+02 0.005 21.3 7.7 20 11-30 59-78 (152)
50 PF02060 ISK_Channel: Slow vol 30.0 57 0.0012 23.9 2.7 44 13-56 49-98 (129)
51 PF10828 DUF2570: Protein of u 28.0 1.9E+02 0.0042 19.5 7.0 6 27-32 17-22 (110)
52 PF08229 SHR3_chaperone: ER me 26.4 1.5E+02 0.0033 22.8 4.6 7 20-26 142-148 (196)
53 TIGR01006 polys_exp_MPA1 polys 26.4 1.7E+02 0.0036 21.4 4.7 15 4-20 165-179 (226)
54 PRK13460 F0F1 ATP synthase sub 26.1 2.5E+02 0.0054 20.1 7.5 30 5-36 10-39 (173)
55 PF10947 DUF2628: Protein of u 25.9 61 0.0013 21.3 2.1 20 18-37 40-59 (108)
56 PF10335 DUF294_C: Putative nu 25.6 28 0.0006 24.3 0.4 21 8-28 42-62 (145)
57 KOG4085|consensus 25.5 46 0.001 25.3 1.6 30 1-31 109-140 (175)
58 PRK01026 tetrahydromethanopter 25.1 41 0.00088 22.7 1.1 8 23-30 50-57 (77)
59 PRK06770 hypothetical protein; 24.9 55 0.0012 25.1 1.9 16 18-33 14-29 (180)
60 TIGR01149 mtrG N5-methyltetrah 24.8 42 0.00091 22.3 1.1 8 23-30 47-54 (70)
61 PF06295 DUF1043: Protein of u 23.7 2.6E+02 0.0056 19.4 5.6 42 20-61 9-50 (128)
62 PF04210 MtrG: Tetrahydrometha 23.2 47 0.001 22.0 1.1 8 23-30 47-54 (70)
63 KOG4056|consensus 23.2 1.2E+02 0.0027 22.5 3.4 34 51-89 47-80 (143)
64 PF08924 DUF1906: Domain of un 23.0 50 0.0011 23.2 1.3 25 62-86 37-61 (136)
65 COG2215 ABC-type uncharacteriz 22.9 64 0.0014 26.5 2.1 15 18-32 55-69 (303)
66 PF05961 Chordopox_A13L: Chord 22.4 69 0.0015 21.2 1.8 21 16-36 9-29 (68)
67 PF14265 DUF4355: Domain of un 22.3 2.5E+02 0.0055 18.8 5.3 47 33-79 39-85 (125)
68 PF06783 UPF0239: Uncharacteri 21.9 1.4E+02 0.0031 20.4 3.3 26 4-30 8-35 (85)
69 PRK09510 tolA cell envelope in 21.8 2.3E+02 0.005 23.9 5.2 23 5-27 13-35 (387)
70 PF07047 OPA3: Optic atrophy 3 21.7 2.7E+02 0.0058 19.5 4.8 41 20-60 82-122 (134)
71 PRK14471 F0F1 ATP synthase sub 21.4 3E+02 0.0065 19.3 6.4 22 15-36 10-31 (164)
72 PF14126 DUF4293: Domain of un 21.3 2.5E+02 0.0054 20.1 4.6 44 13-56 81-147 (149)
73 PRK05759 F0F1 ATP synthase sub 21.1 2.9E+02 0.0062 19.0 6.4 18 18-35 9-26 (156)
74 PF07330 DUF1467: Protein of u 20.6 1.9E+02 0.0042 19.4 3.7 33 4-36 42-77 (85)
75 KOG3976|consensus 20.1 3E+02 0.0064 22.2 5.2 47 18-64 99-157 (247)
No 1
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=99.96 E-value=5.6e-30 Score=172.01 Aligned_cols=71 Identities=42% Similarity=0.581 Sum_probs=66.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhch---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhh
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLE---KKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKN 75 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~YG~~h~~~Lk---~~a~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~~~ 75 (93)
|||+|||+|||+|||||++||+||++|+++|+ +++++++++++++++|+|||++|+|++++.++...+..+
T Consensus 2 ~p~~VSp~inv~RySaL~~Gv~YG~~~~~~L~~~~~~~~~~~e~~~~eklie~AK~a~ak~~~~~~~~~~~~~~ 75 (86)
T PF05680_consen 2 PPVQVSPLINVLRYSALGLGVVYGAYHQRYLKAKAKKEAAEREYEAKEKLIEQAKAAYAKKHAPKQEASSLASD 75 (86)
T ss_pred CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcc
Confidence 79999999999999999999999999999999 777789999999999999999999999999987777654
No 2
>KOG4326|consensus
Probab=99.95 E-value=2.3e-27 Score=158.48 Aligned_cols=74 Identities=46% Similarity=0.664 Sum_probs=71.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhh
Q psy4036 1 MSLPPPVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKN 75 (93)
Q Consensus 1 m~~~ppv~VSplInv~RySAL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~~~ 75 (93)
|+ ||||+|||||+|+|||+|++||+||++|+++|++.+++.|+++++||.+++|+.+.+|+.-+++|+++|++.
T Consensus 1 m~-p~pV~vSPLIkfGRysaL~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~da~~a~ekKr~a~~eaR~Lae~ 74 (81)
T KOG4326|consen 1 MQ-PPPVTVSPLIKFGRYSALSLGVAYGAFRLRQLREYHEDIREIDAHEKAVADAEEAAEKKRWAKDEARYLAEV 74 (81)
T ss_pred CC-CCCeeecHHHHhhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHh
Confidence 67 899999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PRK11677 hypothetical protein; Provisional
Probab=83.08 E-value=5 Score=29.04 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4036 19 TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKK 62 (93)
Q Consensus 19 SAL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aKk 62 (93)
.+|++|++-|+.--+++.+.-.++++.+.+....+++-.+|..+
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQE 51 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988876555555555555545444445443
No 4
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=79.40 E-value=8.8 Score=26.88 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy4036 19 TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKK 50 (93)
Q Consensus 19 SAL~lGV~YG~~h~~~Lk~~a~~~re~e~keK 50 (93)
.+|++|++-|+.-.++..+....+++.+.+..
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~ 35 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELE 35 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 47889999999888888766544444443333
No 5
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=78.81 E-value=15 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhc
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSL 35 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~YG~~h~~~L 35 (93)
||...+.+.--+=|.++.++|+|.+...--+
T Consensus 45 p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~ 75 (204)
T PRK09174 45 PPFDSTHYASQLLWLAITFGLFYLFMSRVIL 75 (204)
T ss_pred CCCcchhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777775554555888899999988765543
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=78.47 E-value=18 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=26.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhchH
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLEK 37 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~YG~~h~~~Lk~ 37 (93)
||...++...-.=|.++.+||+|-+.+.--+.+
T Consensus 2 PQfd~~~~~sqifw~iI~FlILy~ll~kf~~pp 34 (155)
T PRK06569 2 PQFDIATYYSQIFWLIVTFGLLYIFVYKFITPK 34 (155)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 677777777777799999999999988776654
No 7
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=74.80 E-value=16 Score=22.01 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q psy4036 20 MLSAGILYGV 29 (93)
Q Consensus 20 AL~lGV~YG~ 29 (93)
++++|++-|.
T Consensus 27 ~f~~G~llg~ 36 (68)
T PF06305_consen 27 AFLLGALLGW 36 (68)
T ss_pred HHHHHHHHHH
Confidence 4455555554
No 8
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=69.09 E-value=33 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=20.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhc
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSL 35 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~YG~~h~~~L 35 (93)
|++..+++..-.=|.++.++|+|-+.++--+
T Consensus 23 p~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~ 53 (181)
T PRK13454 23 PQLDFSTFPNQIFWLLVTLVAIYFVLTRVAL 53 (181)
T ss_pred CCCcHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665555555778888888887755433
No 9
>KOG2629|consensus
Probab=68.03 E-value=24 Score=29.06 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhh--hhch
Q psy4036 19 TMLSAGILYGVSRQ--SSLE 36 (93)
Q Consensus 19 SAL~lGV~YG~~h~--~~Lk 36 (93)
.+++.||.||+|.. +|+.
T Consensus 90 Avi~aGi~y~~y~~~K~YV~ 109 (300)
T KOG2629|consen 90 AVILAGIAYAAYRFVKSYVL 109 (300)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 47899999999863 5554
No 10
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=63.26 E-value=12 Score=25.26 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+..+++.-.. ....++.-++++++|+.++.+-+....++..-+ +..+++|.+|-
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~AH~~qt~llq~ea~g~~~~~slLlvHA 73 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADEELLKAHKIQTELLQQEANGEKVEISLLLVHA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhh
Confidence 3344444443322 456788999999999999999998877776554 45789999994
No 11
>COG5454 Predicted secreted protein [Function unknown]
Probab=61.26 E-value=15 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=20.4
Q ss_pred CCCCcchhHHHHH---HHHHHHHHHHHHhhhhhc
Q psy4036 5 PPVSVSPLIKFAR---WTMLSAGILYGVSRQSSL 35 (93)
Q Consensus 5 ppv~VSplInv~R---ySAL~lGV~YG~~h~~~L 35 (93)
+|.+.--+=.|+| -||+..|++||..|-.-+
T Consensus 43 AP~~p~~~R~vl~TT~~savi~gl~y~lt~~~g~ 76 (89)
T COG5454 43 APANPHLLRAVLRTTVASAVIFGLFYGLTHFLGY 76 (89)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444443333443 689999999999986543
No 12
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.92 E-value=36 Score=20.57 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhh
Q psy4036 22 SAGILYGVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKK 74 (93)
Q Consensus 22 ~lGV~YG~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~~ 74 (93)
++.+.+|..+...++..-+ -+++.+..++..++-+.++++....++.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 9 LVFGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444455555555543333 3566666677777777777777556666665554
No 13
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=58.71 E-value=19 Score=25.39 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHhhhhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKE-EKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a-~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+-.++++-. +.+..+++-++++++|+..+.+-+....++..-+ +..+++|.||-
T Consensus 29 G~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~qt~Liq~Ea~Ge~~~~slLlvHA 90 (115)
T PRK10454 29 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGDQGEGKMKVSLVLVHA 90 (115)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeeehH
Confidence 444545555433 3567788999999999999999998887776443 45699999994
No 14
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=58.51 E-value=15 Score=24.37 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy4036 20 MLSAGILYGVSRQSSLEKKEEKLRVIR 46 (93)
Q Consensus 20 AL~lGV~YG~~h~~~Lk~~a~~~re~e 46 (93)
+.+...+|+.+.++|+.+++.++++.=
T Consensus 44 ~t~~~~l~~wwKNN~vT~k~~~~~~~l 70 (75)
T TIGR01592 44 FTIGVSLWTWWKNNYITRKGKKQKQKL 70 (75)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 345566899999999999887665543
No 15
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.22 E-value=77 Score=23.48 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy4036 15 FARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIK 53 (93)
Q Consensus 15 v~RySAL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~ 53 (93)
+.--.+|++||+-|+.--|-.+.+.+.+...+.+.+.++
T Consensus 9 ~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K 47 (138)
T COG3105 9 EYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVK 47 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHH
Confidence 334467899999999988888777766555554444433
No 16
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=57.22 E-value=6.1 Score=26.85 Aligned_cols=10 Identities=50% Similarity=0.903 Sum_probs=8.2
Q ss_pred HHHHHHHhhh
Q psy4036 23 AGILYGVSRQ 32 (93)
Q Consensus 23 lGV~YG~~h~ 32 (93)
-|++||++|.
T Consensus 113 ~G~LYGvF~l 122 (122)
T PF03648_consen 113 RGVLYGVFHL 122 (122)
T ss_dssp HHHHHHHHHH
T ss_pred cEEEEEEeeC
Confidence 4899999884
No 17
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=55.82 E-value=58 Score=22.90 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=5.3
Q ss_pred HHHHHHHhhhhhc
Q psy4036 23 AGILYGVSRQSSL 35 (93)
Q Consensus 23 lGV~YG~~h~~~L 35 (93)
+|+++.-+.++.-
T Consensus 89 ~~li~~E~~Rs~~ 101 (134)
T PF07047_consen 89 AGLIIYEYWRSAR 101 (134)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444433
No 18
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=55.00 E-value=24 Score=21.71 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy4036 22 SAGILYGVSRQSSLEKKEEKLRVIRAQKK 50 (93)
Q Consensus 22 ~lGV~YG~~h~~~Lk~~a~~~re~e~keK 50 (93)
..|.+-|...+++.+-......++.++|+
T Consensus 27 ~~g~~~~~~~y~~~~~~r~~~~~~~e~~~ 55 (59)
T PF14880_consen 27 YGGGLTVYTVYSYFKYNRRRRAEWIEREK 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666544444334444443
No 19
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=52.00 E-value=80 Score=22.11 Aligned_cols=16 Identities=6% Similarity=0.302 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4036 18 WTMLSAGILYGVSRQS 33 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~ 33 (93)
|++..+++||+...+.
T Consensus 6 w~~i~f~i~l~~l~~~ 21 (159)
T PRK09173 6 WAFVGLVLFLALVVYL 21 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566666655443
No 20
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=51.77 E-value=31 Score=23.49 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=41.0
Q ss_pred HHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+-.++..-.. .+..+++-++++++|+.++.+-+....++..-+ +..+++|.||-
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~AH~~qt~liq~ea~g~~~~~slLlvHA 76 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQAGMCLNEAHLAQTSLLAQEAGGGKMEVSLTMVHA 76 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeehhH
Confidence 4444445544333 456688889999999999999888777766443 45699999994
No 21
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=50.33 E-value=50 Score=26.21 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy4036 14 KFARWTMLSAGIL 26 (93)
Q Consensus 14 nv~RySAL~lGV~ 26 (93)
....+-.+++.++
T Consensus 232 ~~~~l~~~v~~l~ 244 (321)
T PF07946_consen 232 ALEPLLKLVFYLI 244 (321)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555544
No 22
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=49.83 E-value=52 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhh
Q psy4036 19 TMLSAGILYGVSRQS 33 (93)
Q Consensus 19 SAL~lGV~YG~~h~~ 33 (93)
.+|+||+.-|.--++
T Consensus 82 v~liLgl~ig~p~~k 96 (279)
T PF07271_consen 82 VALILGLAIGIPIYK 96 (279)
T ss_pred HHHHHHHhhcchhhh
Confidence 467888888874443
No 23
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=49.16 E-value=37 Score=23.01 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+..+.+.-.. ....++.-++++++|+.++.+-+....++..-+ +..+++|.||-
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~AH~~qt~liq~ea~g~~~~~slLlvHA 74 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEANDSLNEAHHAQTKLLQQEASGEKVEVSLLLVHA 74 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeehhH
Confidence 4444444444333 466788999999999999999888777765443 45689999994
No 24
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=48.41 E-value=41 Score=23.13 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+..+++.-.. .+..++.-+.++++|+.++.+-+....++..-+ +..+++|.||-
T Consensus 18 G~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~AH~~qt~liq~Ea~g~~~~~slLlvHA 79 (104)
T PRK09591 18 GNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQTKLLQEYASGTEIKIEIIMVHA 79 (104)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeehhH
Confidence 4445555554333 467788888999999999999888777765443 34589999994
No 25
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=47.29 E-value=80 Score=20.75 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhchH
Q psy4036 18 WTMLSAGILYGVSRQSSLEK 37 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~~Lk~ 37 (93)
|.+..++|+|++..+--.+|
T Consensus 4 ~~~i~Flil~~~l~~~~~~p 23 (132)
T PF00430_consen 4 WQLINFLILFFLLNKFLYKP 23 (132)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766655544
No 26
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=46.46 E-value=64 Score=19.40 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCCCcch-hH-HHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q psy4036 5 PPVSVSP-LI-KFARWTMLSAGILYGVSRQSSLEKKEEKLRV 44 (93)
Q Consensus 5 ppv~VSp-lI-nv~RySAL~lGV~YG~~h~~~Lk~~a~~~re 44 (93)
+|++++- .| .+.=-.+++...+|+.+..+|+.+++.++++
T Consensus 3 ~plpi~e~~i~~~~s~v~t~~~~l~awwKNN~vT~ka~~q~~ 44 (47)
T PF04688_consen 3 SPLPIDEEQINQLISAVFTIVTALYAWWKNNYVTKKAKKQKQ 44 (47)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3444443 23 3333345566678999999999988776554
No 27
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=45.20 E-value=42 Score=26.65 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHH---hhhhhchHH
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILYGV---SRQSSLEKK 38 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~YG~---~h~~~Lk~~ 38 (93)
||++|||-..+.=--|+++|++-|. ++.-+|-++
T Consensus 164 ~~spvsP~~~~Ni~iaf~~Gl~~~igiafl~e~lD~t 200 (226)
T COG3944 164 PSSPVSPKVMRNIVIAFLAGLAGAIGIAFLLEYLDKT 200 (226)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788888766666677788877663 444455433
No 28
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=44.85 E-value=39 Score=21.36 Aligned_cols=13 Identities=31% Similarity=0.214 Sum_probs=5.8
Q ss_pred CCCcchhHHHHHH
Q psy4036 6 PVSVSPLIKFARW 18 (93)
Q Consensus 6 pv~VSplInv~Ry 18 (93)
|++.+..++++=.
T Consensus 53 P~~P~~~lil~l~ 65 (82)
T PF13807_consen 53 PVSPKRALILALG 65 (82)
T ss_pred CCCCcHHHHHHHH
Confidence 4444444555433
No 29
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=44.39 E-value=1.2e+02 Score=21.76 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhhch
Q psy4036 18 WTMLSAGILYGVSRQSSLE 36 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~~Lk 36 (93)
|.++.++|+||+.++--.+
T Consensus 23 ~~~i~Flil~~lL~~~l~k 41 (175)
T PRK14472 23 WTAVTFVIVLLILKKIAWG 41 (175)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 7778888888887665543
No 30
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=42.62 E-value=1.4e+02 Score=22.12 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhhc
Q psy4036 19 TMLSAGILYGVSRQSSL 35 (93)
Q Consensus 19 SAL~lGV~YG~~h~~~L 35 (93)
.++++|++-|+.-.+..
T Consensus 8 ~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 8 VALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666665544444
No 31
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=42.54 E-value=56 Score=22.05 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4036 14 KFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKK 62 (93)
Q Consensus 14 nv~RySAL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aKk 62 (93)
-++-||... |.||...-+-- ..++++=++.|+|||+...++
T Consensus 47 ~fG~Ysl~~--lgy~v~tFnDc------peA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 47 SFGCYSLFT--LGYGVATFNDC------PEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHHHHHH--HHHhhhccCCC------HHHHHHHHHHHHHHHHHHHHc
Confidence 334444333 34666555442 233445567799999888765
No 32
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=41.81 E-value=20 Score=21.62 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy4036 15 FARWTMLSAGILYGVSR 31 (93)
Q Consensus 15 v~RySAL~lGV~YG~~h 31 (93)
|-=.-|+.+|+.||.-.
T Consensus 12 VPVvma~ilglIyGlGe 28 (41)
T PF10766_consen 12 VPVVMALILGLIYGLGE 28 (41)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33456899999999743
No 33
>PRK12705 hypothetical protein; Provisional
Probab=41.77 E-value=1.4e+02 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhchHH
Q psy4036 12 LIKFARWTMLSAGILYGVSRQSSLEKK 38 (93)
Q Consensus 12 lInv~RySAL~lGV~YG~~h~~~Lk~~ 38 (93)
++=|+=.+.|++|++|-+..++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (508)
T PRK12705 7 LVILLLLIGLLLGVLVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888777775443
No 34
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=40.69 E-value=1.1e+02 Score=20.43 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=13.1
Q ss_pred hhchhheeehhhHHHHhh
Q psy4036 74 KNHVAIFIIHQDLQVFMK 91 (93)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~ 91 (93)
+..+++++-|+|+.-+--
T Consensus 62 ~~~~~~~~~h~eid~i~~ 79 (121)
T PF14276_consen 62 KKRWSILIEHQEIDNIDI 79 (121)
T ss_pred chheeeeecHHHHHHHHH
Confidence 346789999998876543
No 35
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=40.54 E-value=34 Score=24.08 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeeh
Q psy4036 39 EEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIH 83 (93)
Q Consensus 39 a~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~ 83 (93)
++++..++.-+.++++|+....+.+....++..-+ |-.+|++.||
T Consensus 29 ~Ak~g~f~~A~~~i~eA~~~l~eAH~~QT~Liq~eA~G~k~~~slllvH 77 (105)
T COG1447 29 AAKEGDFEEAEELIQEANDALNEAHHVQTKLIQKEASGEKIEVSLLLVH 77 (105)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccceeeeeee
Confidence 34567888999999999999999887777666443 5578999999
No 36
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.48 E-value=27 Score=29.33 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy4036 11 PLIKFARWTMLSAGILYGV 29 (93)
Q Consensus 11 plInv~RySAL~lGV~YG~ 29 (93)
++=|++-|++|+.|++||-
T Consensus 3 ~~~k~l~~~~l~~~~~ygG 21 (582)
T PF09731_consen 3 SFRKFLLYTTLLGGVGYGG 21 (582)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3445555666666555553
No 37
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=37.00 E-value=27 Score=27.98 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy4036 16 ARWTMLSAGILYGVSRQ 32 (93)
Q Consensus 16 ~RySAL~lGV~YG~~h~ 32 (93)
.=|+.+++|++||+.|-
T Consensus 12 ~~~~l~~~~f~yG~~HA 28 (279)
T PRK10019 12 NAWFFIPSAILLGALHG 28 (279)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 35888999999999884
No 38
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=36.98 E-value=20 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHhhhhchhheeehhhHHHHhh
Q psy4036 70 ISLKKNHVAIFIIHQDLQVFMK 91 (93)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~ 91 (93)
+.|.+.|.+|++||+||..-+.
T Consensus 183 ~~l~~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 183 KELRQEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHCCCEEEEEeCCcHHhHh
Confidence 3566679999999999987654
No 39
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.02 E-value=80 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhh
Q psy4036 18 WTMLSAGILYGVSR 31 (93)
Q Consensus 18 ySAL~lGV~YG~~h 31 (93)
.-||++||+-|+.=
T Consensus 15 FlALavGI~lG~~~ 28 (308)
T PF11382_consen 15 FLALAVGIVLGSGP 28 (308)
T ss_pred HHHHHHHHHhcchh
Confidence 35899999999886
No 40
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=35.94 E-value=28 Score=26.50 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhh
Q psy4036 18 WTMLSAGILYGVSRQ 32 (93)
Q Consensus 18 ySAL~lGV~YG~~h~ 32 (93)
|+.++++.+||+.|=
T Consensus 2 l~ll~laf~~G~~HA 16 (282)
T PF03824_consen 2 LSLLLLAFLYGLLHA 16 (282)
T ss_pred HHHHHHHHHHHHHHc
Confidence 577888888888773
No 41
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.75 E-value=1.4e+02 Score=20.23 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHH-HHHHhcCHHHHHHhhhhc
Q psy4036 47 AQKKAIKDAKLA-EEKKRANEVSRISLKKNH 76 (93)
Q Consensus 47 ~keKli~eAK~e-~aKk~~~~~e~~~l~~~~ 76 (93)
+.|+.+.+++-. ++-+...+++.+.+.-+.
T Consensus 43 k~Ek~~~~~qvkn~~vrqknee~~~~~sr~~ 73 (87)
T PF10883_consen 43 KTEKAVAETQVKNAKVRQKNEENTRRLSRDS 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccCCHHH
Confidence 334444443333 333444555555555443
No 42
>KOG4841|consensus
Probab=35.33 E-value=68 Score=22.38 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4036 46 RAQKKAIKDAKLAEEKK 62 (93)
Q Consensus 46 e~keKli~eAK~e~aKk 62 (93)
-.-++-|+||+++.+++
T Consensus 75 veL~~~IkEAr~~L~rk 91 (95)
T KOG4841|consen 75 VELQSQIKEARADLARK 91 (95)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34456688888887765
No 43
>PHA02047 phage lambda Rz1-like protein
Probab=34.67 E-value=1.7e+02 Score=20.73 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhh-hhhch
Q psy4036 16 ARWTMLSAGILYGVSR-QSSLE 36 (93)
Q Consensus 16 ~RySAL~lGV~YG~~h-~~~Lk 36 (93)
+=..++++|-.|||.. |+++-
T Consensus 9 ~~~v~~~~g~~y~~~~~~r~~g 30 (101)
T PHA02047 9 LVLVVVALGASYGFVQSYRALG 30 (101)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3345788999999988 77753
No 44
>PLN02453 complex I subunit
Probab=34.34 E-value=17 Score=25.75 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhhchHHHH
Q psy4036 19 TMLSAGILYGVSRQSSLEKKEE 40 (93)
Q Consensus 19 SAL~lGV~YG~~h~~~Lk~~a~ 40 (93)
+.+++||.|.++-+-+++.-|.
T Consensus 72 t~vil~Vgl~aKPDtsIqtWA~ 93 (105)
T PLN02453 72 TIVILGVGLNAKPDTRIETWAH 93 (105)
T ss_pred HHHHHheeeeccCCCcHHHHHH
Confidence 6788999999999999986544
No 45
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.24 E-value=1.1e+02 Score=18.43 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4036 21 LSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64 (93)
Q Consensus 21 L~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aKk~~ 64 (93)
+++.++.|......+ ..-..+.++-++.+++.+.+.++...
T Consensus 5 ~~~~~~~~~~~~~~~---~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 5 LVIFLVFGISGYSRY---YQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred hhhHHHHhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 34455566666666666666666543
No 46
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.06 E-value=1.2e+02 Score=24.30 Aligned_cols=24 Identities=25% Similarity=0.004 Sum_probs=14.7
Q ss_pred CcchhHHH--HHHHHHHHHHHHHHhh
Q psy4036 8 SVSPLIKF--ARWTMLSAGILYGVSR 31 (93)
Q Consensus 8 ~VSplInv--~RySAL~lGV~YG~~h 31 (93)
++-+++.. ++||+++.=++-|..-
T Consensus 10 ~~~~l~a~v~~~~s~~~~~~l~~~~~ 35 (247)
T COG3879 10 SLEMLDAGVFWMLSISLAMLLAGVML 35 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544 8888877666666543
No 47
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=32.57 E-value=1.9e+02 Score=20.74 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhhchH
Q psy4036 16 ARWTMLSAGILYGVSRQSSLEK 37 (93)
Q Consensus 16 ~RySAL~lGV~YG~~h~~~Lk~ 37 (93)
.=|.++.++|||++..+-..+|
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~p 30 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWKP 30 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 5578888888888877665554
No 48
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=32.01 E-value=22 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.4
Q ss_pred HHHHHhhhhchhheeehhhHHH
Q psy4036 67 VSRISLKKNHVAIFIIHQDLQV 88 (93)
Q Consensus 67 ~e~~~l~~~~~~~~~~~~~~~~ 88 (93)
+-.+.|.++++.|++||+|+--
T Consensus 37 ~~~~~l~~~~~~iIiite~~a~ 58 (104)
T COG1436 37 AALRVLAEDDVGIILITEDLAE 58 (104)
T ss_pred HHHHhhccCCceEEEEeHHHHh
Confidence 3455678889999999999754
No 49
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=30.94 E-value=2.3e+02 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy4036 11 PLIKFARWTMLSAGILYGVS 30 (93)
Q Consensus 11 plInv~RySAL~lGV~YG~~ 30 (93)
..=+.|=||+|.|||=.+..
T Consensus 59 ~~K~ACaWsaLALgVR~A~R 78 (152)
T PF15186_consen 59 EAKRACAWSALALGVRFAAR 78 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999988764
No 50
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=30.05 E-value=57 Score=23.91 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHH------HHHHHHHHHHHHHHHH
Q psy4036 13 IKFARWTMLSAGILYGVSRQSSLEKKEE------KLRVIRAQKKAIKDAK 56 (93)
Q Consensus 13 Inv~RySAL~lGV~YG~~h~~~Lk~~a~------~~re~e~keKli~eAK 56 (93)
+=++=|+++.+||+-|..+-+.+.++.+ +.+.|..|-|..-+|+
T Consensus 49 ~vmgfFgff~~gImlsyvRSKK~E~s~DPyh~YIe~d~W~eK~K~~~qa~ 98 (129)
T PF02060_consen 49 VVMGFFGFFTVGIMLSYVRSKKREHSHDPYHQYIEEDDWQEKDKAYFQAR 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TTTTTS-TTT--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccChHHHHhHHHHHHHHHHHHHHHH
Confidence 4567789999999999998888877666 2345666655554554
No 51
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=28.04 E-value=1.9e+02 Score=19.46 Aligned_cols=6 Identities=17% Similarity=-0.296 Sum_probs=2.2
Q ss_pred HHHhhh
Q psy4036 27 YGVSRQ 32 (93)
Q Consensus 27 YG~~h~ 32 (93)
+|+.++
T Consensus 17 ~~~l~~ 22 (110)
T PF10828_consen 17 GGWLWY 22 (110)
T ss_pred HHHHHH
Confidence 333333
No 52
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=26.41 E-value=1.5e+02 Score=22.75 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=3.3
Q ss_pred HHHHHHH
Q psy4036 20 MLSAGIL 26 (93)
Q Consensus 20 AL~lGV~ 26 (93)
++++||+
T Consensus 142 ~~LvGVL 148 (196)
T PF08229_consen 142 LVLVGVL 148 (196)
T ss_pred HHHHHHH
Confidence 3445554
No 53
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=26.36 E-value=1.7e+02 Score=21.37 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=7.4
Q ss_pred CCCCCcchhHHHHHHHH
Q psy4036 4 PPPVSVSPLIKFARWTM 20 (93)
Q Consensus 4 ~ppv~VSplInv~RySA 20 (93)
.|+.+++|- ..++.+
T Consensus 165 ~p~~p~~P~--~~~~~~ 179 (226)
T TIGR01006 165 PATTPSSPN--PKRNLL 179 (226)
T ss_pred CCCCCCCCc--HHHHHH
Confidence 344666663 344444
No 54
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.14 E-value=2.5e+02 Score=20.05 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhch
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLE 36 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~YG~~h~~~Lk 36 (93)
|+..+.|. ..=|.++.+.|+|++.++-..+
T Consensus 10 ~~l~~~~~--~~~~~~i~Flil~~iL~~~~~k 39 (173)
T PRK13460 10 SLLDVNPG--LVVWTLVTFLVVVLVLKKFAWD 39 (173)
T ss_pred CccCCcHh--HHHHHHHHHHHHHHHHHHHhHH
Confidence 55555542 2446777778888777665544
No 55
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=25.90 E-value=61 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhhchH
Q psy4036 18 WTMLSAGILYGVSRQSSLEK 37 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~~Lk~ 37 (93)
|.|+++|.+|-++|..++..
T Consensus 40 w~Af~f~~~w~l~r~mw~~~ 59 (108)
T PF10947_consen 40 WWAFFFGPLWLLYRKMWLYA 59 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999988653
No 56
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=25.59 E-value=28 Score=24.35 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=16.5
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q psy4036 8 SVSPLIKFARWTMLSAGILYG 28 (93)
Q Consensus 8 ~VSplInv~RySAL~lGV~YG 28 (93)
.+.|+++.+||-||-.||.=.
T Consensus 42 gl~piv~~~R~lAL~~gi~~~ 62 (145)
T PF10335_consen 42 GLFPIVNAARLLALRHGISET 62 (145)
T ss_pred hHHHHHHHHHHHHHHcCCCCC
Confidence 457999999999998875443
No 57
>KOG4085|consensus
Probab=25.54 E-value=46 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=18.9
Q ss_pred CCCCCCCCcchhHHHHHHH--HHHHHHHHHHhh
Q psy4036 1 MSLPPPVSVSPLIKFARWT--MLSAGILYGVSR 31 (93)
Q Consensus 1 m~~~ppv~VSplInv~RyS--AL~lGV~YG~~h 31 (93)
|+. +|+-.|-+.+.+==| ..+.||+||+.-
T Consensus 109 Mav-vPI~lc~~L~tllGsg~iFatGV~YG~mA 140 (175)
T KOG4085|consen 109 MAV-VPIVLCLTLTTLLGSGIIFATGVLYGLMA 140 (175)
T ss_pred hcc-ccchhhhhHHHHhCcchhhhhHHHHHHHH
Confidence 453 666666666554433 456799999853
No 58
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=25.13 E-value=41 Score=22.67 Aligned_cols=8 Identities=63% Similarity=1.207 Sum_probs=5.6
Q ss_pred HHHHHHHh
Q psy4036 23 AGILYGVS 30 (93)
Q Consensus 23 lGV~YG~~ 30 (93)
+||+||+.
T Consensus 50 iGIlYG~v 57 (77)
T PRK01026 50 IGILYGLV 57 (77)
T ss_pred HHHHHHHH
Confidence 67777764
No 59
>PRK06770 hypothetical protein; Provisional
Probab=24.94 E-value=55 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4036 18 WTMLSAGILYGVSRQS 33 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~ 33 (93)
-..|++|+.||+..|-
T Consensus 14 m~vl~~g~t~G~l~y~ 29 (180)
T PRK06770 14 MAVLGIGVTYGMLYYA 29 (180)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3467899999988773
No 60
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=24.81 E-value=42 Score=22.29 Aligned_cols=8 Identities=63% Similarity=1.207 Sum_probs=5.6
Q ss_pred HHHHHHHh
Q psy4036 23 AGILYGVS 30 (93)
Q Consensus 23 lGV~YG~~ 30 (93)
+||+||+.
T Consensus 47 iGIlYG~v 54 (70)
T TIGR01149 47 IGILYGLV 54 (70)
T ss_pred HHHHHHHH
Confidence 67777764
No 61
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.65 E-value=2.6e+02 Score=19.43 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4036 20 MLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEK 61 (93)
Q Consensus 20 AL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aK 61 (93)
-+++|++-+..-.+..+.+.+-+++.++.+...++=|.+...
T Consensus 9 G~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 9 GLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888777666556666555555555554443
No 62
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.21 E-value=47 Score=22.04 Aligned_cols=8 Identities=63% Similarity=1.207 Sum_probs=5.5
Q ss_pred HHHHHHHh
Q psy4036 23 AGILYGVS 30 (93)
Q Consensus 23 lGV~YG~~ 30 (93)
.||+||+.
T Consensus 47 iGIlYG~v 54 (70)
T PF04210_consen 47 IGILYGLV 54 (70)
T ss_pred HHHHHHHH
Confidence 67777764
No 63
>KOG4056|consensus
Probab=23.16 E-value=1.2e+02 Score=22.50 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHhhhhchhheeehhhHHHH
Q psy4036 51 AIKDAKLAEEKKRANEVSRISLKKNHVAIFIIHQDLQVF 89 (93)
Q Consensus 51 li~eAK~e~aKk~~~~~e~~~l~~~~~~~~~~~~~~~~~ 89 (93)
-+++++.+-++...+..... +.-+.--+.+.+.|
T Consensus 47 rk~q~~ae~a~~~~a~sk~~-----~~pd~~d~~~~E~~ 80 (143)
T KOG4056|consen 47 RKKQASAELAKERAAASKAD-----NIPDPSDAEEVEKF 80 (143)
T ss_pred HHHHhhcccccccchhhccc-----cCCCCCCHHHHHHH
Confidence 34444444444444443222 34444445555543
No 64
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.96 E-value=50 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=17.0
Q ss_pred HhcCHHHHHHhhhhchhheeehhhH
Q psy4036 62 KRANEVSRISLKKNHVAIFIIHQDL 86 (93)
Q Consensus 62 k~~~~~e~~~l~~~~~~~~~~~~~~ 86 (93)
+..-++|+..+...|+.||-|.|+-
T Consensus 37 k~Lt~~e~~~i~~~Gl~i~pIyq~~ 61 (136)
T PF08924_consen 37 KNLTAGEVQDIRAAGLRIFPIYQGG 61 (136)
T ss_dssp -B--HHHHHHHHHTT-EEEEEE---
T ss_pred CCCCHHHHHHHHHCCCEEEEEEecc
Confidence 4567899999999999999999984
No 65
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.90 E-value=64 Score=26.54 Aligned_cols=15 Identities=40% Similarity=0.955 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhh
Q psy4036 18 WTMLSAGILYGVSRQ 32 (93)
Q Consensus 18 ySAL~lGV~YG~~h~ 32 (93)
|+.+++++.||+.|-
T Consensus 55 w~li~~SflyGvlHA 69 (303)
T COG2215 55 WTLIPLSFLYGVLHA 69 (303)
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999984
No 66
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.36 E-value=69 Score=21.16 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhhhch
Q psy4036 16 ARWTMLSAGILYGVSRQSSLE 36 (93)
Q Consensus 16 ~RySAL~lGV~YG~~h~~~Lk 36 (93)
.=-.+...+|+||.|++.+-+
T Consensus 9 ~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 334577889999999988775
No 67
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=22.28 E-value=2.5e+02 Score=18.77 Aligned_cols=47 Identities=6% Similarity=0.175 Sum_probs=25.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhhchhh
Q psy4036 33 SSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAI 79 (93)
Q Consensus 33 ~~Lk~~a~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~~~~~~~ 79 (93)
..+.+.++.+.+.+..++.+++.+++.++......=...|.+.|+.+
T Consensus 39 ~k~~~~ek~~~e~~~~~~el~~~~~e~~~~e~~~~~~~~l~e~GLp~ 85 (125)
T PF14265_consen 39 AKMSAEEKAQEELEELEKELEELEAELARRELRSEAKKVLAEKGLPA 85 (125)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33444333344445555555555555555555555555677777754
No 68
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=21.88 E-value=1.4e+02 Score=20.39 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=14.4
Q ss_pred CCC-CCcchh-HHHHHHHHHHHHHHHHHh
Q psy4036 4 PPP-VSVSPL-IKFARWTMLSAGILYGVS 30 (93)
Q Consensus 4 ~pp-v~VSpl-Inv~RySAL~lGV~YG~~ 30 (93)
.|| ++--++ =|++||. |++|-++-+.
T Consensus 8 sp~ei~Eet~~e~llRYG-Lf~GAIFQli 35 (85)
T PF06783_consen 8 SPPEIPEETFFENLLRYG-LFVGAIFQLI 35 (85)
T ss_pred CCccCCcchHHHHHHHHH-HHHHHHHHHH
Confidence 344 555555 5999995 3344443333
No 69
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=21.82 E-value=2.3e+02 Score=23.87 Aligned_cols=23 Identities=9% Similarity=0.158 Sum_probs=14.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHH
Q psy4036 5 PPVSVSPLIKFARWTMLSAGILY 27 (93)
Q Consensus 5 ppv~VSplInv~RySAL~lGV~Y 27 (93)
.|+-+|-++-|+=..+|++|+++
T Consensus 13 ~aiiiSv~LHvlLi~lLi~gs~~ 35 (387)
T PRK09510 13 RAIIISVVLHIILFALLIWSSFD 35 (387)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666666666666666655
No 70
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.71 E-value=2.7e+02 Score=19.52 Aligned_cols=41 Identities=5% Similarity=0.023 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4036 20 MLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEE 60 (93)
Q Consensus 20 AL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~a 60 (93)
++++||.-|.--+-|.+...++.++.+..+..+++=+.+..
T Consensus 82 ~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~ 122 (134)
T PF07047_consen 82 AFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIE 122 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888898888876665554444444444333333
No 71
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=21.43 E-value=3e+02 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhch
Q psy4036 15 FARWTMLSAGILYGVSRQSSLE 36 (93)
Q Consensus 15 v~RySAL~lGV~YG~~h~~~Lk 36 (93)
..=|.++.+.|+|.+.++--.+
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~ 31 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWK 31 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3346666666766665544443
No 72
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=21.26 E-value=2.5e+02 Score=20.14 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHH-----------------------HHHHHHHHHHHHHHHH
Q psy4036 13 IKFARWTMLSAGILYGVSRQSSLEKKEE-----------------------KLRVIRAQKKAIKDAK 56 (93)
Q Consensus 13 Inv~RySAL~lGV~YG~~h~~~Lk~~a~-----------------------~~re~e~keKli~eAK 56 (93)
++.++++.+.....||.+-+..++...+ +.|...+.||+++.+.
T Consensus 81 ~~L~~~nill~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lp~vaii~~~LA~r~I~kDEkLVrS~D 147 (149)
T PF14126_consen 81 IRLCVLNILLNVGLYGLFAYFSLNLSGELGATFSFGIGFFLPLVAIIFLWLANRAIKKDEKLVRSAD 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 4789999999999999888777764321 3577888888888764
No 73
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.12 E-value=2.9e+02 Score=18.96 Aligned_cols=18 Identities=11% Similarity=-0.136 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy4036 18 WTMLSAGILYGVSRQSSL 35 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~~L 35 (93)
|.+..++|+|++.++--.
T Consensus 9 ~~~i~Flil~~il~~~~~ 26 (156)
T PRK05759 9 GQLIAFLILVWFIMKFVW 26 (156)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 556666666666655443
No 74
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=20.62 E-value=1.9e+02 Score=19.35 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHH---HHHHHHHHHHHHhhhhhch
Q psy4036 4 PPPVSVSPLIKFAR---WTMLSAGILYGVSRQSSLE 36 (93)
Q Consensus 4 ~ppv~VSplInv~R---ySAL~lGV~YG~~h~~~Lk 36 (93)
++|.+....-|+.+ .|++..|++|+.++.-.+.
T Consensus 42 sAP~~~~l~rk~~~TTiiaavi~~~~~~~~~~g~i~ 77 (85)
T PF07330_consen 42 SAPANPRLKRKALITTIIAAVIFAIIYLIIVSGWIS 77 (85)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46777777766666 4667778888887776664
No 75
>KOG3976|consensus
Probab=20.08 E-value=3e+02 Score=22.21 Aligned_cols=47 Identities=26% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhchHHHH-HH-----------HHHHHHHHHHHHHHHHHHHHhc
Q psy4036 18 WTMLSAGILYGVSRQSSLEKKEE-KL-----------RVIRAQKKAIKDAKLAEEKKRA 64 (93)
Q Consensus 18 ySAL~lGV~YG~~h~~~Lk~~a~-~~-----------re~e~keKli~eAK~e~aKk~~ 64 (93)
+|.+++|++||..-..+-.+.++ .. ...++.-|.|.|+....+++..
T Consensus 99 ~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~ 157 (247)
T KOG3976|consen 99 ISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQA 157 (247)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Confidence 57788888888877766655544 11 2223444555555555555554
Done!