Query psy4036
Match_columns 93
No_of_seqs 102 out of 169
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 23:44:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4egx_A Kinesin-like protein KI 55.7 18 0.00063 25.6 4.7 41 39-79 8-53 (184)
2 1wcr_A PTS system, N, N'-diace 51.9 7.2 0.00025 25.9 1.9 57 28-84 16-77 (103)
3 2e2a_A Protein (enzyme IIA); h 50.7 7.6 0.00026 25.9 1.8 57 28-84 18-79 (105)
4 3l8r_A PTCA, putative PTS syst 49.3 9.1 0.00031 26.3 2.1 57 28-84 35-96 (120)
5 3k1s_A PTS system, cellobiose- 47.2 10 0.00036 25.4 2.1 57 28-84 20-81 (109)
6 3nr7_A DNA-binding protein H-N 34.0 75 0.0026 20.4 4.6 10 70-79 66-75 (86)
7 2zt9_E Cytochrome B6-F complex 19.8 72 0.0025 17.3 2.1 15 16-30 12-26 (31)
8 3aon_B V-type sodium ATPase su 19.3 49 0.0017 21.9 1.6 19 69-87 37-55 (115)
9 2ve7_C Kinetochore protein NUF 18.2 1E+02 0.0034 22.8 3.3 10 9-18 126-135 (250)
10 2ov6_A V-type ATP synthase sub 17.0 64 0.0022 20.5 1.7 21 66-86 33-54 (101)
No 1
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=55.75 E-value=18 Score=25.59 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHhhhhchhh
Q psy4036 39 EEKLRVIRAQKKAIKDAKLAEEKKRANEVS-----RISLKKNHVAI 79 (93)
Q Consensus 39 a~~~re~e~keKli~eAK~e~aKk~~~~~e-----~~~l~~~~~~~ 79 (93)
++...+.++-|+++++....|+.++...++ .+.|++.++++
T Consensus 8 ee~~e~L~~~e~l~~el~~tWeeKl~~te~~~~e~~~~l~~~gi~~ 53 (184)
T 4egx_A 8 EEAIERLKETEKIIAELNETWEEKLRRTEAIRMEREALLAEMGVAM 53 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 344567778899999999988888765543 44677777765
No 2
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=51.90 E-value=7.2 Score=25.93 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHhhhhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKE-EKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a-~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+-.++..-. +....++.-++++++|+.++.+-+....++..-+ +..+++|.+|-
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~Ea~g~~~~~slLlvHA 77 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGKMKVSLVLVHA 77 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSCCSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeehhH
Confidence 333444444332 3456788999999999999999998888777653 45689999993
No 3
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=50.72 E-value=7.6 Score=25.91 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHhhhhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKE-EKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a-~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+-.++..-. +....++.-++++++|+.++.+-+....++..-+ +..+++|.+|-
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~Ea~g~~~~~slLlvHA 79 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMHG 79 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeehhH
Confidence 334444444433 3456788999999999999999998888777654 45689999993
No 4
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=49.29 E-value=9.1 Score=26.27 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+-.++..-.. .+..++.-++++++|+.++.+-+....++..-+ +..+++|.+|-
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT~Liq~EA~G~~~~~sLLlvHA 96 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEANDELLKAHQAQTDLLQEYASGTEIKIEIIMVHA 96 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeeehH
Confidence 3344444443322 457788999999999999999998887776543 45689999993
No 5
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=47.18 E-value=10 Score=25.40 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=40.6
Q ss_pred HHhhhhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhh----hhchhheeehh
Q psy4036 28 GVSRQSSLEKKE-EKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK----KNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a-~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~----~~~~~~~~~~~ 84 (93)
|--+-.++..-. +.+..++.-++++++|+.++.+-+....++..-+ +..+++|.+|-
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT~Liq~Ea~g~~~~~slLlvHA 81 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKAKEAINEAHHFQTELIQSEARGEKTEISVLLIHA 81 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeehhH
Confidence 333444444332 2457788999999999999999998877776543 45688999993
No 6
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=34.03 E-value=75 Score=20.35 Aligned_cols=10 Identities=10% Similarity=-0.051 Sum_probs=6.8
Q ss_pred HHhhhhchhh
Q psy4036 70 ISLKKNHVAI 79 (93)
Q Consensus 70 ~~l~~~~~~~ 79 (93)
..|.++|+++
T Consensus 66 e~l~~~GI~~ 75 (86)
T 3nr7_A 66 EMLIADGIDP 75 (86)
T ss_dssp HHHHHTCCCH
T ss_pred HHHHHcCCCH
Confidence 3567777765
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=19.78 E-value=72 Score=17.28 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy4036 16 ARWTMLSAGILYGVS 30 (93)
Q Consensus 16 ~RySAL~lGV~YG~~ 30 (93)
.=.+++.+|++.|.+
T Consensus 12 ~~~~~iA~GL~fGLr 26 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLR 26 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677788888865
No 8
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=19.32 E-value=49 Score=21.86 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHhhhhchhheeehhhHH
Q psy4036 69 RISLKKNHVAIFIIHQDLQ 87 (93)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~ 87 (93)
.+.+.+++++|++|++++-
T Consensus 37 ~~~l~~~digIIlIte~ia 55 (115)
T 3aon_B 37 IDEMAKNEYGVIYITEQCA 55 (115)
T ss_dssp HHHHHHTTEEEEEEEHHHH
T ss_pred HHHHHhcCceEEEEeHHHH
Confidence 4455566999999999863
No 9
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=18.24 E-value=1e+02 Score=22.82 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=6.4
Q ss_pred cchhHHHHHH
Q psy4036 9 VSPLIKFARW 18 (93)
Q Consensus 9 VSplInv~Ry 18 (93)
.|.+|||+|+
T Consensus 126 LSalINF~~F 135 (250)
T 2ve7_C 126 LSGIINFIHF 135 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3566777774
No 10
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=17.00 E-value=64 Score=20.55 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHhhhh-chhheeehhhH
Q psy4036 66 EVSRISLKKN-HVAIFIIHQDL 86 (93)
Q Consensus 66 ~~e~~~l~~~-~~~~~~~~~~~ 86 (93)
.+..+.+.++ +++|++|++++
T Consensus 33 ~~~~~~l~~~~digIIlite~~ 54 (101)
T 2ov6_A 33 ESAVRSVLEDKSVGILVMHNDD 54 (101)
T ss_dssp HHHHHHHHHHTSSSEEEEEHHH
T ss_pred HHHHHHHhhCCCeEEEEEcHHH
Done!