Query psy4036
Match_columns 93
No_of_seqs 102 out of 169
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 23:44:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4036.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4036hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e2aa_ a.7.2.1 (A:) Enzyme II 54.6 3.8 0.00028 25.7 2.4 57 28-84 18-79 (104)
2 d1h41a2 d.92.2.2 (A:5-151) alp 44.9 3.6 0.00026 26.4 1.1 13 23-35 118-130 (147)
3 d1l8na2 d.92.2.2 (A:4-142) alp 41.6 4.3 0.00032 25.6 1.1 13 23-35 109-121 (139)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 28.5 17 0.0013 18.5 2.0 14 17-30 10-23 (32)
5 d1ji0a_ c.37.1.12 (A:) Branche 26.2 13 0.00098 25.3 1.7 22 69-90 182-203 (240)
6 d1l7vc_ c.37.1.12 (C:) ABC tra 19.1 22 0.0016 23.8 1.5 24 68-91 174-197 (231)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 16.1 44 0.0032 16.3 1.9 14 20-33 8-21 (27)
8 d1xaua_ b.1.1.4 (A:) B and T l 12.9 18 0.0013 23.0 -0.3 13 73-85 61-73 (104)
9 d1sfsa_ c.1.8.8 (A:) Unnamed h 12.9 30 0.0022 23.9 0.9 25 62-86 41-65 (213)
10 d2d00a1 c.149.1.1 (A:6-109) V- 11.8 34 0.0025 20.4 0.8 14 73-86 38-51 (104)
No 1
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}
Probab=54.56 E-value=3.8 Score=25.73 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHhhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHh----hhhchhheeehh
Q psy4036 28 GVSRQSSLEKKEE-KLRVIRAQKKAIKDAKLAEEKKRANEVSRISL----KKNHVAIFIIHQ 84 (93)
Q Consensus 28 G~~h~~~Lk~~a~-~~re~e~keKli~eAK~e~aKk~~~~~e~~~l----~~~~~~~~~~~~ 84 (93)
|--+..++..-.. .+..+++-++++++|+.++.+-+....++..- .+..+++|.+|-
T Consensus 18 G~Ars~~~eAl~~ak~gdfe~A~~~l~eA~e~l~~AH~~qt~liq~Ea~g~~~~~slLlvHA 79 (104)
T d2e2aa_ 18 GDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMHG 79 (104)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeehhH
Confidence 4444455544333 45678888999999999999988877777654 467789999994
No 2
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=44.86 E-value=3.6 Score=26.38 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhhc
Q psy4036 23 AGILYGVSRQSSL 35 (93)
Q Consensus 23 lGV~YG~~h~~~L 35 (93)
-|++||+||...+
T Consensus 118 rG~LYG~f~lLr~ 130 (147)
T d1h41a2 118 VGVLYGSFHLLRL 130 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHH
Confidence 4999999998765
No 3
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=41.63 E-value=4.3 Score=25.60 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhhc
Q psy4036 23 AGILYGVSRQSSL 35 (93)
Q Consensus 23 lGV~YG~~h~~~L 35 (93)
.|++||++|...+
T Consensus 109 ~G~lYGvf~Ll~~ 121 (139)
T d1l8na2 109 AGVLYGVFHFLRL 121 (139)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 5999999998654
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.50 E-value=17 Score=18.47 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHh
Q psy4036 17 RWTMLSAGILYGVS 30 (93)
Q Consensus 17 RySAL~lGV~YG~~ 30 (93)
-+.||++||.-|..
T Consensus 10 vfialffgiavgii 23 (32)
T d2e74e1 10 VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe
Confidence 45789999988864
No 5
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=26.24 E-value=13 Score=25.27 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=17.5
Q ss_pred HHHhhhhchhheeehhhHHHHh
Q psy4036 69 RISLKKNHVAIFIIHQDLQVFM 90 (93)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~ 90 (93)
++.|.+.|.+|++|.+|+...+
T Consensus 182 i~~l~~~g~til~~tH~l~~~~ 203 (240)
T d1ji0a_ 182 IQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HHHHHHTTCCEEEEESCHHHHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHH
Confidence 4467788999999999987654
No 6
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
Probab=19.09 E-value=22 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHhhhhchhheeehhhHHHHhh
Q psy4036 68 SRISLKKNHVAIFIIHQDLQVFMK 91 (93)
Q Consensus 68 e~~~l~~~~~~~~~~~~~~~~~~~ 91 (93)
-++.|.+.|.+|+++.+|+...+.
T Consensus 174 ~i~~l~~~g~tii~vtHdl~~~~~ 197 (231)
T d1l7vc_ 174 ILSALCQQGLAIVMSSHDLNHTLR 197 (231)
T ss_dssp HHHHHHHTTCEEEECCCCHHHHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHH
Confidence 356778889999999999876543
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.08 E-value=44 Score=16.32 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhh
Q psy4036 20 MLSAGILYGVSRQS 33 (93)
Q Consensus 20 AL~lGV~YG~~h~~ 33 (93)
+-..|+||.++.+.
T Consensus 8 ~tl~glf~aayqqy 21 (27)
T d2e74g1 8 ATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34579999988763
No 8
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.91 E-value=18 Score=22.97 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=11.0
Q ss_pred hhhchhheeehhh
Q psy4036 73 KKNHVAIFIIHQD 85 (93)
Q Consensus 73 ~~~~~~~~~~~~~ 85 (93)
+++|+++||.|-|
T Consensus 61 e~~nis~FvLhF~ 73 (104)
T d1xaua_ 61 ENRSVPVFVLHFK 73 (104)
T ss_dssp CSSSSCEEEEEET
T ss_pred hcCCeeEEEEEee
Confidence 5789999999965
No 9
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.85 E-value=30 Score=23.91 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=21.7
Q ss_pred HhcCHHHHHHhhhhchhheeehhhH
Q psy4036 62 KRANEVSRISLKKNHVAIFIIHQDL 86 (93)
Q Consensus 62 k~~~~~e~~~l~~~~~~~~~~~~~~ 86 (93)
+..-++|++.|-..+++||.|-||.
T Consensus 41 k~lt~~E~~~I~~~Gl~~~PIyq~~ 65 (213)
T d1sfsa_ 41 EGLTRDEIVRIRNYGVKVLPIYNAF 65 (213)
T ss_dssp CBCCHHHHHHHHHTTCEEEEEECCC
T ss_pred ccCCHHHHHHHHHCCCEEEEEEecC
Confidence 4567899999999999999998863
No 10
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}
Probab=11.75 E-value=34 Score=20.42 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.8
Q ss_pred hhhchhheeehhhH
Q psy4036 73 KKNHVAIFIIHQDL 86 (93)
Q Consensus 73 ~~~~~~~~~~~~~~ 86 (93)
+..+++|++|++++
T Consensus 38 ~~~d~gII~Ite~~ 51 (104)
T d2d00a1 38 ERGGYALVAVDEAL 51 (104)
T ss_dssp HHCCCSEEEEETTT
T ss_pred hCCCeEEEEEcHHH
Confidence 46789999999985
Done!