RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4036
         (93 letters)



>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 26.2 bits (58), Expect = 0.50
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 36  EKKEEKLRVIRAQKKAIKDAKLAEEKK 62
            + E + ++ + +K  IK+      K+
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 26.2 bits (58), Expect = 0.51
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 35  LEKKEEKLRVIRAQKKAIKDAKLAEEKK 62
             +KE+K ++   +KK I+  +   E+ 
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129


>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
          [TaxId: 562]}
          Length = 188

 Score = 25.1 bits (55), Expect = 1.3
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 32 QSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAIF 80
              +KK +       + K   + K    K  A ++  I ++   V   
Sbjct: 47 DPVFQKKADA-----DKTKTFAEIKDYYHKGYATDIEMIGIEDGIVEFH 90


>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
           {Bacillus sp. GL1 [TaxId: 84635]}
          Length = 377

 Score = 23.9 bits (51), Expect = 3.5
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 14  KFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAI 52
             + WT   A  +YG +  S      + L   +   +  
Sbjct: 215 DGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHF 253


>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus
          subtilis [TaxId: 1423]}
          Length = 148

 Score = 22.7 bits (48), Expect = 7.6
 Identities = 7/43 (16%), Positives = 22/43 (51%)

Query: 36 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVA 78
           ++++KL V+R  K ++++  +  +K    E   +++    + 
Sbjct: 17 NREKDKLTVVRMVKASLQNEAIKLKKDSLTEDEELTVLSRELK 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,208
Number of extensions: 11907
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 14
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)