BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4037
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
           Receptor Junctional Adhesion Molecule-Like Protein, Jaml
 pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
           Adenovirus Receptor, Car
 pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
           Antibody Hl4e10
          Length = 268

 Score = 27.3 bits (59), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 84  NEGLLFKKGQSIWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVS 133
           NE ++ KK   +W L EE ++ ++RV       ++ +  + E+KR  +V+
Sbjct: 107 NESMVMKKPVELWVLPEEPRDLRVRV--GDTTQMRCSIQSTEEKRVTKVN 154


>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
           Turnover Of Slac: A Two-Domain Laccase From Streptomyces
           Coelicolor
 pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
           Turnover Of Slac: A Two-Domain Laccase From Streptomyces
           Coelicolor
 pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
           Turnover Of Slac: A Two-Domain Laccase From Streptomyces
           Coelicolor
          Length = 278

 Score = 26.2 bits (56), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 18/47 (38%)

Query: 6   PGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSRQS 52
           P F  +    +   +  HGE  HT   H  RW     GIL G    S
Sbjct: 171 PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPS 217


>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
 pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
 pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
          Length = 343

 Score = 26.2 bits (56), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 18/47 (38%)

Query: 6   PGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSRQS 52
           P F  +    +   +  HGE  HT   H  RW     GIL G    S
Sbjct: 209 PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPS 255


>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
           Turnover Of Slac: A Two-Domain Laccase From Streptomyces
           Coelicolor
 pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
           Turnover Of Slac: A Two-Domain Laccase From Streptomyces
           Coelicolor
 pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
           Turnover Of Slac: A Two-Domain Laccase From Streptomyces
           Coelicolor
          Length = 279

 Score = 26.2 bits (56), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 18/47 (38%)

Query: 6   PGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSRQS 52
           P F  +    +   +  HGE  HT   H  RW     GIL G    S
Sbjct: 172 PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPS 218


>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
           Resolution
          Length = 276

 Score = 26.2 bits (56), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 18/47 (38%)

Query: 6   PGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSRQS 52
           P F  +    +   +  HGE  HT   H  RW     GIL G    S
Sbjct: 168 PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPS 214


>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase
           (Ksha) From M. Tuberculosis
          Length = 386

 Score = 26.2 bits (56), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 21/104 (20%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 39  MLSAGILYGVSRQSSLEKKEEKLRVIR--AQKKAIKDAKLAEEKKRANEGLLFKKGQSIW 96
           +L  G++    +  S E  ++  RV      K  ++D ++ + K R +  LL ++  +++
Sbjct: 268 VLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDNPLLVEEDGAVY 327

Query: 97  ALMEEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKN 140
            L    ++  + V   + + ++  ++  + KRANE     ++KN
Sbjct: 328 QLRRWYEQFYVDVADIKPEMVERFEIEVDTKRANEFWNAEVEKN 371


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,946,034
Number of Sequences: 62578
Number of extensions: 134442
Number of successful extensions: 627
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 36
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)