Query psy4037
Match_columns 153
No_of_seqs 121 out of 140
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 23:45:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05680 ATP-synt_E: ATP synth 99.9 8.3E-26 1.8E-30 163.8 7.2 66 24-89 2-70 (86)
2 KOG4326|consensus 99.9 1.8E-24 3.8E-29 156.8 7.5 70 22-91 2-71 (81)
3 KOG4326|consensus 97.6 8.8E-05 1.9E-09 54.5 4.1 32 101-132 35-66 (81)
4 PF05680 ATP-synt_E: ATP synth 90.0 0.53 1.1E-05 34.4 4.0 39 101-139 36-74 (86)
5 PF09989 DUF2229: CoA enzyme a 85.2 3.5 7.6E-05 33.9 6.5 87 2-101 90-180 (221)
6 PRK09174 F0F1 ATP synthase sub 84.8 20 0.00044 29.4 12.4 20 35-54 56-75 (204)
7 KOG2629|consensus 84.5 4.7 0.0001 36.0 7.4 103 11-128 48-169 (300)
8 PTZ00121 MAEBL; Provisional 77.9 16 0.00035 39.4 9.4 21 63-83 1614-1634(2084)
9 PRK13453 F0F1 ATP synthase sub 75.5 37 0.0008 26.6 11.6 19 37-55 23-41 (173)
10 COG0711 AtpF F0F1-type ATP syn 73.8 41 0.00089 26.3 11.9 68 35-102 9-84 (161)
11 PRK14472 F0F1 ATP synthase sub 73.2 42 0.0009 26.2 11.9 20 37-56 23-42 (175)
12 PRK13454 F0F1 ATP synthase sub 72.7 46 0.001 26.4 11.9 16 36-51 35-50 (181)
13 PTZ00121 MAEBL; Provisional 67.8 45 0.00097 36.3 9.9 22 106-127 1228-1249(2084)
14 PRK09510 tolA cell envelope in 62.8 73 0.0016 29.2 9.3 16 31-46 20-35 (387)
15 COG1521 Pantothenate kinase ty 61.1 8.5 0.00018 33.0 3.0 47 2-49 147-196 (251)
16 PF03648 Glyco_hydro_67N: Glyc 59.5 5 0.00011 29.6 1.1 10 42-51 113-122 (122)
17 PRK13460 F0F1 ATP synthase sub 58.2 87 0.0019 24.4 11.6 21 35-55 19-39 (173)
18 PRK09173 F0F1 ATP synthase sub 58.2 81 0.0018 24.0 12.1 16 37-52 6-21 (159)
19 PRK05759 F0F1 ATP synthase sub 56.9 81 0.0018 23.6 11.6 17 37-53 9-25 (156)
20 PRK06569 F0F1 ATP synthase sub 55.0 1.1E+02 0.0024 24.7 12.2 34 25-58 3-36 (155)
21 COG5454 Predicted secreted pro 54.1 15 0.00033 27.8 2.9 17 37-53 59-75 (89)
22 smart00873 B3_4 B3/4 domain. T 52.3 8.5 0.00018 28.6 1.4 45 11-55 17-61 (174)
23 PF07960 CBP4: CBP4; InterPro 52.3 80 0.0017 25.1 6.9 11 90-100 71-81 (128)
24 PRK13327 pantothenate kinase; 52.1 14 0.0003 31.0 2.8 47 2-49 137-184 (242)
25 PRK14471 F0F1 ATP synthase sub 51.7 1.1E+02 0.0023 23.5 11.6 15 37-51 13-27 (164)
26 PRK13326 pantothenate kinase; 51.6 15 0.00032 31.1 2.9 48 2-49 151-200 (262)
27 PRK13318 pantothenate kinase; 49.0 16 0.00034 29.9 2.6 48 2-49 149-198 (258)
28 PF12072 DUF3552: Domain of un 48.9 1.4E+02 0.0031 24.0 12.0 17 38-54 8-24 (201)
29 PF05922 Inhibitor_I9: Peptida 48.3 10 0.00022 24.8 1.1 26 2-27 46-71 (82)
30 PRK13329 pantothenate kinase; 48.2 19 0.00041 30.2 2.9 49 2-50 144-192 (249)
31 PRK13328 pantothenate kinase; 47.9 19 0.00041 30.2 2.9 48 2-50 143-199 (255)
32 KOG3375|consensus 46.4 82 0.0018 26.3 6.3 59 64-122 110-169 (174)
33 PRK06231 F0F1 ATP synthase sub 46.3 1.6E+02 0.0035 24.0 11.7 21 28-48 52-72 (205)
34 PRK13321 pantothenate kinase; 45.6 19 0.00041 29.6 2.5 48 2-50 149-199 (256)
35 PRK07352 F0F1 ATP synthase sub 44.1 1.5E+02 0.0033 23.0 11.6 9 39-47 30-38 (174)
36 PF15186 TEX13: Testis-express 43.4 1.9E+02 0.004 23.9 9.7 33 21-54 50-82 (152)
37 PRK11677 hypothetical protein; 43.3 1E+02 0.0022 24.3 6.2 29 38-66 8-36 (134)
38 PRK06568 F0F1 ATP synthase sub 42.9 1.7E+02 0.0037 23.3 11.6 12 37-48 9-20 (154)
39 PRK09477 napH quinol dehydroge 42.5 28 0.0006 29.1 3.1 55 2-59 90-149 (271)
40 PRK13320 pantothenate kinase; 42.1 21 0.00046 29.7 2.3 48 2-49 139-188 (244)
41 PRK13331 pantothenate kinase; 41.3 27 0.00058 29.8 2.9 48 2-50 138-189 (251)
42 PRK13333 pantothenate kinase; 41.1 23 0.00051 29.4 2.4 48 2-50 108-159 (206)
43 PRK13461 F0F1 ATP synthase sub 40.9 1.6E+02 0.0035 22.4 11.6 8 41-48 14-21 (159)
44 PRK13428 F0F1 ATP synthase sub 39.6 3E+02 0.0064 25.1 11.7 16 66-81 46-61 (445)
45 PF12617 LdpA_C: Iron-Sulfur b 39.3 8.3 0.00018 32.2 -0.5 47 10-57 90-151 (183)
46 PF06295 DUF1043: Protein of u 38.2 1.2E+02 0.0026 23.1 5.7 44 38-84 4-47 (128)
47 KOG0163|consensus 38.2 2.2E+02 0.0048 29.7 8.9 7 16-22 880-886 (1259)
48 PF04688 Phage_holin: Phage ly 37.3 49 0.0011 21.9 3.0 26 38-63 19-44 (47)
49 PRK13324 pantothenate kinase; 37.0 32 0.0007 29.1 2.7 47 2-50 149-199 (258)
50 PF03309 Pan_kinase: Type III 36.8 21 0.00045 28.3 1.5 46 2-49 145-197 (206)
51 PRK13454 F0F1 ATP synthase sub 35.9 2.2E+02 0.0048 22.6 13.4 32 5-47 22-54 (181)
52 TIGR01592 holin_SPP1 holin, SP 35.8 22 0.00047 25.8 1.3 26 39-64 44-69 (75)
53 PRK13322 pantothenate kinase; 35.4 37 0.0008 28.3 2.8 48 2-50 141-191 (246)
54 PF08636 Pkr1: ER protein Pkr1 35.0 47 0.001 24.1 2.9 33 10-44 2-34 (75)
55 TIGR00671 baf pantothenate kin 34.4 36 0.00078 28.2 2.5 47 2-49 141-190 (243)
56 KOG4364|consensus 33.6 2.6E+02 0.0056 28.3 8.5 31 98-128 338-368 (811)
57 PRK12705 hypothetical protein; 31.9 4.5E+02 0.0098 24.9 12.7 26 32-57 8-33 (508)
58 PF08158 NUC130_3NT: NUC130/3N 31.8 28 0.00061 23.4 1.3 26 5-31 9-34 (52)
59 PRK10019 nickel/cobalt efflux 31.6 33 0.00071 29.9 1.9 17 35-51 12-28 (279)
60 PF14198 TnpV: Transposon-enco 30.9 2.3E+02 0.0051 21.3 6.7 75 2-101 7-97 (111)
61 PRK09609 hypothetical protein; 30.5 1.3E+02 0.0028 27.1 5.5 40 39-78 86-128 (312)
62 TIGR02163 napH_ ferredoxin-typ 28.9 59 0.0013 27.0 3.0 56 2-60 83-143 (255)
63 PF08285 DPM3: Dolichol-phosph 27.5 1.2E+02 0.0027 22.3 4.1 42 32-81 46-87 (91)
64 PF03824 NicO: High-affinity n 26.4 46 0.001 27.5 1.9 14 37-50 2-15 (282)
65 PRK12488 acetate permease; Pro 25.6 67 0.0014 29.4 2.9 36 10-45 380-415 (549)
66 PRK09643 RNA polymerase sigma 24.8 64 0.0014 24.8 2.3 45 1-48 1-47 (192)
67 PRK12821 aspartyl/glutamyl-tRN 24.5 36 0.00078 32.3 1.0 14 38-51 140-153 (477)
68 KOG2072|consensus 24.4 5.1E+02 0.011 27.0 8.8 32 58-89 560-591 (988)
69 PF10256 Erf4: Golgin subfamil 24.4 29 0.00063 25.3 0.3 20 2-21 12-31 (118)
70 KOG1029|consensus 24.3 4E+02 0.0086 27.8 8.1 11 75-85 352-362 (1118)
71 PRK13325 bifunctional biotin-- 23.4 73 0.0016 30.2 2.8 46 2-48 474-520 (592)
72 KOG2412|consensus 22.0 4.2E+02 0.009 26.1 7.5 13 36-48 172-184 (591)
73 PRK10361 DNA recombination pro 21.6 7E+02 0.015 23.7 11.8 8 42-49 14-21 (475)
74 PRK09395 actP acetate permease 21.5 96 0.0021 28.3 3.1 35 11-45 383-417 (551)
75 COG2215 ABC-type uncharacteriz 21.3 65 0.0014 28.9 1.9 15 36-50 54-68 (303)
76 PLN02316 synthase/transferase 21.0 2E+02 0.0044 29.6 5.5 46 104-149 442-487 (1036)
77 PRK00247 putative inner membra 20.9 6.7E+02 0.015 23.4 8.4 6 33-38 225-230 (429)
78 PF14880 COX14: Cytochrome oxi 20.8 1.6E+02 0.0035 19.7 3.4 29 40-68 26-54 (59)
79 PHA02047 phage lambda Rz1-like 20.8 4.1E+02 0.0088 20.6 8.3 20 37-56 11-31 (101)
80 PF15086 UPF0542: Uncharacteri 20.5 2.7E+02 0.0059 20.5 4.7 29 99-127 42-70 (74)
81 PF10721 DUF2514: Protein of u 20.0 4.6E+02 0.01 21.0 6.9 12 43-54 13-24 (162)
No 1
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=99.92 E-value=8.3e-26 Score=163.78 Aligned_cols=66 Identities=32% Similarity=0.328 Sum_probs=62.5
Q ss_pred CCCCCCchhhhhhHHHHHHHHHHhhhhhhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q psy4037 24 GECQHTHGQHFARWTMLSAGILYGVSRQSSLE---KKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLF 89 (153)
Q Consensus 24 ~~v~VSPlInv~RwSAL~lGI~YGa~Hqs~Lk---~~aeeeRe~eakEKlI~qAK~a~aKk~~a~~el~ 89 (153)
+||+|||+|||+|||||++||+||++||+||+ ++++.++++++++++|+|||++|+|+++...+..
T Consensus 2 ~p~~VSp~inv~RySaL~~Gv~YG~~~~~~L~~~~~~~~~~~e~~~~eklie~AK~a~ak~~~~~~~~~ 70 (86)
T PF05680_consen 2 PPVQVSPLINVLRYSALGLGVVYGAYHQRYLKAKAKKEAAEREYEAKEKLIEQAKAAYAKKHAPKQEAS 70 (86)
T ss_pred CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 68999999999999999999999999999999 7789999999999999999999999999888644
No 2
>KOG4326|consensus
Probab=99.91 E-value=1.8e-24 Score=156.85 Aligned_cols=70 Identities=31% Similarity=0.360 Sum_probs=67.2
Q ss_pred cCCCCCCCchhhhhhHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q psy4037 22 RHGECQHTHGQHFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKK 91 (153)
Q Consensus 22 ~~~~v~VSPlInv~RwSAL~lGI~YGa~Hqs~Lk~~aeeeRe~eakEKlI~qAK~a~aKk~~a~~el~~~ 91 (153)
-||||+|||||+|+|||+|++||+||++|+++|++++++.|+++++||.+.||+.+.+||+-+++|++.+
T Consensus 2 ~p~pV~vSPLIkfGRysaL~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~da~~a~ekKr~a~~eaR~L 71 (81)
T KOG4326|consen 2 QPPPVTVSPLIKFGRYSALSLGVAYGAFRLRQLREYHEDIREIDAHEKAVADAEEAAEKKRWAKDEARYL 71 (81)
T ss_pred CCCCeeecHHHHhhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999854
No 3
>KOG4326|consensus
Probab=97.59 E-value=8.8e-05 Score=54.48 Aligned_cols=32 Identities=41% Similarity=0.453 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhh
Q psy4037 101 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEV 132 (153)
Q Consensus 101 ~kkE~~~Re~ea~~K~~rDaklAeEKkr~~~~ 132 (153)
.++++.+||+++++|+++||++|+||||.++.
T Consensus 35 ~~~~e~~Rei~a~eKav~da~~a~ekKr~a~~ 66 (81)
T KOG4326|consen 35 REYHEDIREIDAHEKAVADAEEAAEKKRWAKD 66 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHH
Confidence 46788999999999999999999999996543
No 4
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=89.99 E-value=0.53 Score=34.43 Aligned_cols=39 Identities=38% Similarity=0.331 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhhhhccccc
Q psy4037 101 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKK 139 (153)
Q Consensus 101 ~kkE~~~Re~ea~~K~~rDaklAeEKkr~~~~~~~~~~~ 139 (153)
.+++...|+.++++|.|+|||.+.+|+.+.....-++-.
T Consensus 36 ~~~~~~~~e~~~~eklie~AK~a~ak~~~~~~~~~~~~~ 74 (86)
T PF05680_consen 36 AKKEAAEREYEAKEKLIEQAKAAYAKKHAPKQEASSLAS 74 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Confidence 478889999999999999999999999998886555443
No 5
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=85.16 E-value=3.5 Score=33.89 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=51.9
Q ss_pred CccCCCccccHHHHHHhhhh--cCCCCCCCchhhhhhH--HHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy4037 2 GYLIPGFTISFSQMLLKKIF--RHGECQHTHGQHFARW--TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLA 77 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~--~~~~v~VSPlInv~Rw--SAL~lGI~YGa~Hqs~Lk~~aeeeRe~eakEKlI~qAK~a 77 (153)
+|.|| ++.++|+|+.+-++ ..+..-++|.|++.+= ..+.-.+. ...+.-.+.+. +. .+.-..+
T Consensus 90 ~~~CP-~~~g~P~~i~~~~~~~~~~~~~l~p~i~~~~~g~~~~~~~l~-~~~~~lg~~~~-~~----------~~A~~~A 156 (221)
T PF09989_consen 90 SYNCP-KVQGLPDMIRANFFEPELGIRLLSPVIDFSNKGKESLAKALY-ELGKRLGISRK-EI----------RRAFEKA 156 (221)
T ss_pred eEeCH-hHHhHHHHHHHhcccccCCCeEEeeeeccCccchHHHHHHHH-HHHHHcCCCHH-HH----------HHHHHHH
Confidence 58899 66789999999883 3444668899998762 33332222 23222222221 11 1222344
Q ss_pred HHHHHhhHHHhhhccchHHHHHHH
Q psy4037 78 EEKKRANEGLLFKKGQSIWALMEE 101 (153)
Q Consensus 78 ~aKk~~a~~el~~~~~si~~~~~~ 101 (153)
++.+++-..+++..+..+++.+++
T Consensus 157 ~~~~~~~~~~l~~~g~~~l~~~~~ 180 (221)
T PF09989_consen 157 LEAQKAFRRELRKGGEEILAELEA 180 (221)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Confidence 555566667788888888887765
No 6
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=84.84 E-value=20 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHhhhhhhhc
Q psy4037 35 ARWTMLSAGILYGVSRQSSL 54 (153)
Q Consensus 35 ~RwSAL~lGI~YGa~Hqs~L 54 (153)
.=|.++.++|+|.+...--+
T Consensus 56 l~w~~I~FliL~~lL~k~~~ 75 (204)
T PRK09174 56 LLWLAITFGLFYLFMSRVIL 75 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778888888887654433
No 7
>KOG2629|consensus
Probab=84.55 E-value=4.7 Score=36.02 Aligned_cols=103 Identities=22% Similarity=0.110 Sum_probs=53.4
Q ss_pred cHHHHHHhhhh--------cCCCCCCCch---hhhhhHH----HHHHHHHHhhhh--hhhccHHHHHHH--HHHHHHHHH
Q psy4037 11 SFSQMLLKKIF--------RHGECQHTHG---QHFARWT----MLSAGILYGVSR--QSSLEKKEEKLR--VIRAQKKAI 71 (153)
Q Consensus 11 ~f~~~l~~~i~--------~~~~v~VSPl---Inv~RwS----AL~lGI~YGa~H--qs~Lk~~aeeeR--e~eakEKlI 71 (153)
+++|+++++|- -|+...++|- +.=.||. ++++||.||+|. .+|+.|.--.+. .+++..
T Consensus 48 i~~~d~s~~~p~~~~~~~~~p~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~k~e~~k--- 124 (300)
T KOG2629|consen 48 IPAQDVSKQIPTANQVVSGGPPLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLPRFLGESKDKLEADK--- 124 (300)
T ss_pred CccccccccCCCcccccCCCchhhhcCCCccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCccchhHHHHH---
Confidence 45566555543 3344444433 3334554 789999999986 578877632211 112211
Q ss_pred HHHHHHHHHHHhhHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q psy4037 72 KDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKKR 128 (153)
Q Consensus 72 ~qAK~a~aKk~~a~~el~~~~~si~~~~~~kkE~~~Re~ea~~K~~rDaklAeEKkr 128 (153)
+...++..+...++=++|.+-.+ +++...+++-.=+.-|+..+..
T Consensus 125 ----------~~Ld~~~~~~~~~~~~l~~~va~--v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 125 ----------RQLDDQFDKAAKSLNALMDEVAQ--VSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 12233344445555566655443 3444444433555567777665
No 8
>PTZ00121 MAEBL; Provisional
Probab=77.85 E-value=16 Score=39.45 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy4037 63 VIRAQKKAIKDAKLAEEKKRA 83 (153)
Q Consensus 63 e~eakEKlI~qAK~a~aKk~~ 83 (153)
..+.+.+..++.|.++++++.
T Consensus 1614 k~ee~~kk~E~~kk~eeekKk 1634 (2084)
T PTZ00121 1614 KAEEAKIKAEELKKAEEEKKK 1634 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555444443
No 9
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=75.52 E-value=37 Score=26.60 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhhhcc
Q psy4037 37 WTMLSAGILYGVSRQSSLE 55 (153)
Q Consensus 37 wSAL~lGI~YGa~Hqs~Lk 55 (153)
|.++.++|+|+...+-..+
T Consensus 23 ~~iInFliL~~lL~~~l~~ 41 (173)
T PRK13453 23 VTVLTFIVLLALLKKFAWG 41 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666665544433
No 10
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=73.82 E-value=41 Score=26.31 Aligned_cols=68 Identities=7% Similarity=0.041 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhhhhhhhccHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccchHHHHHHHH
Q psy4037 35 ARWTMLSAGILYGVSRQSSLEKKEE--------KLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEK 102 (153)
Q Consensus 35 ~RwSAL~lGI~YGa~Hqs~Lk~~ae--------eeRe~eakEKlI~qAK~a~aKk~~a~~el~~~~~si~~~~~~k 102 (153)
.=|.++.++|||++..+-..+|... -.......++.-++|...-++-...-.+++.+-.+|.+.-...
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~ 84 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKE 84 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888776655554421 1134444455555555555555556666666667776654433
No 11
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=73.24 E-value=42 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhhhhccH
Q psy4037 37 WTMLSAGILYGVSRQSSLEK 56 (153)
Q Consensus 37 wSAL~lGI~YGa~Hqs~Lk~ 56 (153)
|.++.++|+||...+--.+|
T Consensus 23 ~~~i~Flil~~lL~~~l~kp 42 (175)
T PRK14472 23 WTAVTFVIVLLILKKIAWGP 42 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 77778888888766554443
No 12
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=72.66 E-value=46 Score=26.43 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHhhhhh
Q psy4037 36 RWTMLSAGILYGVSRQ 51 (153)
Q Consensus 36 RwSAL~lGI~YGa~Hq 51 (153)
=|.+++++|+|-+..+
T Consensus 35 ~~~lI~F~iL~~ll~k 50 (181)
T PRK13454 35 FWLLVTLVAIYFVLTR 50 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556667776666544
No 13
>PTZ00121 MAEBL; Provisional
Probab=67.77 E-value=45 Score=36.33 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhHhHHHHHH
Q psy4037 106 KLRVIRAQKKAIKDAKLAEEKK 127 (153)
Q Consensus 106 ~~Re~ea~~K~~rDaklAeEKk 127 (153)
.+|..|.+++..=+|+.++|.+
T Consensus 1228 E~RraEEaRK~aEEAkraEEeR 1249 (2084)
T PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEER 1249 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444
No 14
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=62.81 E-value=73 Score=29.18 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=6.7
Q ss_pred hhhhhhHHHHHHHHHH
Q psy4037 31 GQHFARWTMLSAGILY 46 (153)
Q Consensus 31 lInv~RwSAL~lGI~Y 46 (153)
++.++=..+|++|+++
T Consensus 20 ~LHvlLi~lLi~gs~~ 35 (387)
T PRK09510 20 VLHIILFALLIWSSFD 35 (387)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3334444444444433
No 15
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=61.14 E-value=8.5 Score=32.99 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=29.7
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCCc---hhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHTH---GQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VSP---lInv~RwSAL~lGI~YGa~ 49 (153)
|+++||.+.+|..-..+-.-+ |++...+ ++--.=-+++-.|++||..
T Consensus 147 G~I~PGi~l~~~aL~~~aa~l-p~~~~~~~~~~~gk~T~~aiqsG~v~g~~ 196 (251)
T COG1521 147 GAILPGITLSFEALFARAAKL-PRVEIARPESVPGKNTVEAIQSGVVYGYV 196 (251)
T ss_pred eEeccCHHHHHHHHHHHHhcC-CcccccCccccCCcchHHHHHHhHHHHHH
Confidence 789999999986544333333 3333222 2223345789999999975
No 16
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=59.49 E-value=5 Score=29.62 Aligned_cols=10 Identities=50% Similarity=0.903 Sum_probs=8.3
Q ss_pred HHHHHhhhhh
Q psy4037 42 AGILYGVSRQ 51 (153)
Q Consensus 42 lGI~YGa~Hq 51 (153)
-|++||+||.
T Consensus 113 ~G~LYGvF~l 122 (122)
T PF03648_consen 113 RGVLYGVFHL 122 (122)
T ss_dssp HHHHHHHHHH
T ss_pred cEEEEEEeeC
Confidence 4899999984
No 17
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=58.23 E-value=87 Score=24.39 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHhhhhhhhcc
Q psy4037 35 ARWTMLSAGILYGVSRQSSLE 55 (153)
Q Consensus 35 ~RwSAL~lGI~YGa~Hqs~Lk 55 (153)
.=|.++.+.|+|+...+-..+
T Consensus 19 ~~~~~i~Flil~~iL~~~~~k 39 (173)
T PRK13460 19 VVWTLVTFLVVVLVLKKFAWD 39 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 336666677777766554433
No 18
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=58.21 E-value=81 Score=24.03 Aligned_cols=16 Identities=6% Similarity=0.302 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhhh
Q psy4037 37 WTMLSAGILYGVSRQS 52 (153)
Q Consensus 37 wSAL~lGI~YGa~Hqs 52 (153)
|++..++|||+...+-
T Consensus 6 w~~i~f~i~l~~l~~~ 21 (159)
T PRK09173 6 WAFVGLVLFLALVVYL 21 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665443
No 19
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=56.90 E-value=81 Score=23.62 Aligned_cols=17 Identities=12% Similarity=-0.131 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy4037 37 WTMLSAGILYGVSRQSS 53 (153)
Q Consensus 37 wSAL~lGI~YGa~Hqs~ 53 (153)
|.++.++|+|+..++--
T Consensus 9 ~~~i~Flil~~il~~~~ 25 (156)
T PRK05759 9 GQLIAFLILVWFIMKFV 25 (156)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555566666554443
No 20
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=55.04 E-value=1.1e+02 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=23.0
Q ss_pred CCCCCchhhhhhHHHHHHHHHHhhhhhhhccHHH
Q psy4037 25 ECQHTHGQHFARWTMLSAGILYGVSRQSSLEKKE 58 (153)
Q Consensus 25 ~v~VSPlInv~RwSAL~lGI~YGa~Hqs~Lk~~a 58 (153)
+..++....-.=|.++.+||+|-+.+.--+.|-.
T Consensus 3 Qfd~~~~~sqifw~iI~FlILy~ll~kf~~ppI~ 36 (155)
T PRK06569 3 QFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAE 36 (155)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334434444558899999999988877666553
No 21
>COG5454 Predicted secreted protein [Function unknown]
Probab=54.14 E-value=15 Score=27.76 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy4037 37 WTMLSAGILYGVSRQSS 53 (153)
Q Consensus 37 wSAL~lGI~YGa~Hqs~ 53 (153)
-||++.|++||..|-.=
T Consensus 59 ~savi~gl~y~lt~~~g 75 (89)
T COG5454 59 ASAVIFGLFYGLTHFLG 75 (89)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 58999999999998653
No 22
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=52.34 E-value=8.5 Score=28.64 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=38.0
Q ss_pred cHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHHHhhhhhhhcc
Q psy4037 11 SFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSRQSSLE 55 (153)
Q Consensus 11 ~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~YGa~Hqs~Lk 55 (153)
.=|..|..+++..+-....|+|.+.-|..|-.|+-||++-...++
T Consensus 17 ~s~~~l~~rL~~~~~~~~n~~vdi~n~~~l~~g~p~~~~D~d~i~ 61 (174)
T smart00873 17 PSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIK 61 (174)
T ss_pred CCHHHHHHHHHHcCCCCcchhhhHHHHHHHHhCCCCeeEcHHHcC
Confidence 336778888888777779999999999999999999999876553
No 23
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=52.27 E-value=80 Score=25.06 Aligned_cols=11 Identities=27% Similarity=0.592 Sum_probs=9.7
Q ss_pred hccchHHHHHH
Q psy4037 90 KKGQSIWALME 100 (153)
Q Consensus 90 ~~~~si~~~~~ 100 (153)
+-|.+||.+..
T Consensus 71 kSdkPIW~~~~ 81 (128)
T PF07960_consen 71 KSDKPIWKTGK 81 (128)
T ss_pred ccCCCceeeCC
Confidence 77899999987
No 24
>PRK13327 pantothenate kinase; Reviewed
Probab=52.13 E-value=14 Score=31.04 Aligned_cols=47 Identities=9% Similarity=-0.093 Sum_probs=28.7
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCC-chhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHT-HGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VS-PlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||...++.....+-=-+|. +... ..+--.=-.++-.|++||..
T Consensus 137 G~I~PG~~lm~~aL~~~Ta~Lp~-~~~~~~~~g~~T~~ai~sG~~~~~~ 184 (242)
T PRK13327 137 GRIAASPTTMREALHARAVQLPA-SGGDYVEFANDTDDALTSGCDGAAV 184 (242)
T ss_pred EEECccHHHHHHHHHHhhccCCC-CccccccccCCHHHHHHHHHHHHHH
Confidence 79999999887766555444442 2222 22211225788899999853
No 25
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.73 E-value=1.1e+02 Score=23.48 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhh
Q psy4037 37 WTMLSAGILYGVSRQ 51 (153)
Q Consensus 37 wSAL~lGI~YGa~Hq 51 (153)
|.++.+.|+|....+
T Consensus 13 ~~~i~Flil~~ll~~ 27 (164)
T PRK14471 13 WQTILFLILLLLLAK 27 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555433
No 26
>PRK13326 pantothenate kinase; Reviewed
Probab=51.57 E-value=15 Score=31.10 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=30.0
Q ss_pred CccCCCccccHHHHHHhhhhcCC--CCCCCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHG--ECQHTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~--~v~VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||...++--...+-=.+|. -..+.+.+--.=-.++-.||+||..
T Consensus 151 G~I~PGi~l~~~AL~~~TA~Lp~v~l~~p~~~iG~nT~~aI~sGi~~g~~ 200 (262)
T PRK13326 151 GLINGGPFTNLNALLDNAYLLKDFNLSVPKNLLGLSTSDSVNSGVIYQYK 200 (262)
T ss_pred EEECccHHHHHHHHHHhHhcCCCCccCCCCccccCCHHHHHHHHHHHHHH
Confidence 78999999888766554333431 1111223323337889999999974
No 27
>PRK13318 pantothenate kinase; Reviewed
Probab=49.05 E-value=16 Score=29.95 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred CccCCCccccHHHHHHhhhhcCCC-CC-CCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGE-CQ-HTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~-v~-VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||...++.-...+-=-+|.. .. .++.+-..=-+++-.|++||..
T Consensus 149 G~I~PG~~l~~~aL~~~ta~Lp~~~~~~~~~~~g~~T~~ai~~G~~~~~~ 198 (258)
T PRK13318 149 GVIAPGINISADALFQRAAKLPRVEITKPDSVIGKNTVEAMQSGIYYGYV 198 (258)
T ss_pred EEECccHHHHHHHHHhhhhcCCCCcCCCCCccCCCCHHHHHHHHHHHHHH
Confidence 789999988876655443333321 11 1111222236889999999865
No 28
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=48.87 E-value=1.4e+02 Score=24.02 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhhhhhc
Q psy4037 38 TMLSAGILYGVSRQSSL 54 (153)
Q Consensus 38 SAL~lGI~YGa~Hqs~L 54 (153)
.++++|++-|++-.+..
T Consensus 8 ~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 8 VALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666665544444
No 29
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=48.32 E-value=10 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.3
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCC
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQ 27 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~ 27 (153)
++.++||++.|++.-+++|-.+|.|.
T Consensus 46 ~~~~~Gfs~~l~~~~i~~L~~~p~V~ 71 (82)
T PF05922_consen 46 DNAFNGFSAKLSEEEIEKLRKDPGVK 71 (82)
T ss_dssp SSTSSEEEEEE-HHHHHHHHTSTTEE
T ss_pred eeeEEEEEEEeCHHHHHHHHcCCCeE
Confidence 34689999999999999999888764
No 30
>PRK13329 pantothenate kinase; Reviewed
Probab=48.16 E-value=19 Score=30.18 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=30.3
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-...+-=-||.+-...+.+=-.=-.++-.|++||...
T Consensus 144 G~I~PGl~l~~~aL~~~Ta~Lp~~~~~~~~~g~~T~~ai~sG~~~g~~~ 192 (249)
T PRK13329 144 GLILPGHGLMLRALESGTAGLHVPTGEVREFPTNTSDALTSGGTQAIAG 192 (249)
T ss_pred EEECcCHHHHHHHHHhhhhcCCCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 7899999988866655544455331111222122367889999998753
No 31
>PRK13328 pantothenate kinase; Reviewed
Probab=47.94 E-value=19 Score=30.18 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=29.1
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCC---------CCchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQ---------HTHGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~---------VSPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-...+-=-+| .+. .++.+-..=-.++-.|++||..-
T Consensus 143 G~I~PG~~l~~~aL~~~Ta~Lp-~v~~~~~~~~~~~~~~lg~~T~~ai~sG~~~~~~~ 199 (255)
T PRK13328 143 GLILPGLALMMRALARHTAQLP-TLDVDAASAAAGAVAPFADDTPDAISAGCLAAQAG 199 (255)
T ss_pred EEecCCHHHHHHHHHHhHhcCC-ccccccccccCCccccCCCCHHHHHHHHHHHHHHH
Confidence 7999999888765544432233 111 11222233368899999998753
No 32
>KOG3375|consensus
Probab=46.38 E-value=82 Score=26.31 Aligned_cols=59 Identities=22% Similarity=0.080 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH-hhhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q psy4037 64 IRAQKKAIKDAKLAEEKKRANEGL-LFKKGQSIWALMEEKKEEKLRVIRAQKKAIKDAKL 122 (153)
Q Consensus 64 ~eakEKlI~qAK~a~aKk~~a~~e-l~~~~~si~~~~~~kkE~~~Re~ea~~K~~rDakl 122 (153)
.+++|-.-..|+.-|.|-+.+=.. --+.+|-=||++-+.+|..-+--|+..|+.+|+..
T Consensus 110 RereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekkaa~~~tk 169 (174)
T KOG3375|consen 110 REREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKKAADVATK 169 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 345555556778888886655433 23668888999999999999988999999888765
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.29 E-value=1.6e+02 Score=23.98 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=8.8
Q ss_pred CCchhhhhhHHHHHHHHHHhh
Q psy4037 28 HTHGQHFARWTMLSAGILYGV 48 (153)
Q Consensus 28 VSPlInv~RwSAL~lGI~YGa 48 (153)
+..+|||+=-.+|+.=++||.
T Consensus 52 i~qlInFlIlv~lL~k~l~kP 72 (205)
T PRK06231 52 IAHLIAFSILLLLGIFLFWKP 72 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455543333333334443
No 34
>PRK13321 pantothenate kinase; Reviewed
Probab=45.56 E-value=19 Score=29.58 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=27.2
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCC-chhhhhh--HHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHT-HGQHFAR--WTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VS-PlInv~R--wSAL~lGI~YGa~H 50 (153)
|+++||...++.-...+-=.+| .+..+ |.-.+++ -+++-.|++||...
T Consensus 149 G~I~PG~~l~~~aL~~~ta~Lp-~~~~~~~~~~~g~~T~~ai~~G~~~~~~~ 199 (256)
T PRK13321 149 GAICPGILISMEALSQKTAKLP-RVEIAKPPSAIGKSTVSSIQSGLYYGYAG 199 (256)
T ss_pred EEECccHHHHHHHHHhhhhcCC-CCccCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 7899998876654333322233 12222 1111223 68899999998753
No 35
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=44.12 E-value=1.5e+02 Score=23.01 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q psy4037 39 MLSAGILYG 47 (153)
Q Consensus 39 AL~lGI~YG 47 (153)
++++||+|=
T Consensus 30 lIl~~lL~~ 38 (174)
T PRK07352 30 AIVIGLLYY 38 (174)
T ss_pred HHHHHHHHH
Confidence 344444443
No 36
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=43.40 E-value=1.9e+02 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=24.1
Q ss_pred hcCCCCCCCchhhhhhHHHHHHHHHHhhhhhhhc
Q psy4037 21 FRHGECQHTHGQHFARWTMLSAGILYGVSRQSSL 54 (153)
Q Consensus 21 ~~~~~v~VSPlInv~RwSAL~lGI~YGa~Hqs~L 54 (153)
++-|+--++..=+-|=||+|.+||-.+. +|+-+
T Consensus 50 Il~d~~Vp~~~K~ACaWsaLALgVR~A~-RQ~q~ 82 (152)
T PF15186_consen 50 ILEDSQVPREAKRACAWSALALGVRFAA-RQRQL 82 (152)
T ss_pred HHhCccCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3556655666788999999999998865 44444
No 37
>PRK11677 hypothetical protein; Provisional
Probab=43.31 E-value=1e+02 Score=24.30 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhhhhccHHHHHHHHHHH
Q psy4037 38 TMLSAGILYGVSRQSSLEKKEEKLRVIRA 66 (153)
Q Consensus 38 SAL~lGI~YGa~Hqs~Lk~~aeeeRe~ea 66 (153)
.+|++|++=|+.=-+++.+.-.+.++.+.
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~ 36 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQY 36 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 57899999999999988876544444433
No 38
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=42.93 E-value=1.7e+02 Score=23.33 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhh
Q psy4037 37 WTMLSAGILYGV 48 (153)
Q Consensus 37 wSAL~lGI~YGa 48 (153)
|.++.++|+++.
T Consensus 9 wq~I~FlIll~l 20 (154)
T PRK06568 9 WLAVSFVIFVYL 20 (154)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 39
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=42.51 E-value=28 Score=29.14 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=31.1
Q ss_pred CccCCCccc-cHHHHHHhhhhcCCCCCCCchhhhhhHHHHHH----HHHHhhhhhhhccHHHH
Q psy4037 2 GYLIPGFTI-SFSQMLLKKIFRHGECQHTHGQHFARWTMLSA----GILYGVSRQSSLEKKEE 59 (153)
Q Consensus 2 ~~~~pg~t~-~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~l----GI~YGa~Hqs~Lk~~ae 59 (153)
|++||--++ .+-..+.+|+..... .+.-+-.||..|++ ..++|..-..++.|-..
T Consensus 90 gwiCP~g~l~e~~~~l~~k~~~~~~---~~~~~~~ky~~L~~~l~l~~~~g~~~~~~~~P~~~ 149 (271)
T PRK09477 90 SWVCPVNLVTDLANWLRRKLGLNQS---ATLPRNLRYWLLVLVLVGSALTGTLAWEWINPVSM 149 (271)
T ss_pred eeeCCchhHHHHHHHHHHHhCCCcc---cccchhHHHHHHHHHHHHHHHHhhhheeEeCcHHH
Confidence 789995433 233444455443221 22336678976554 34578777777777643
No 40
>PRK13320 pantothenate kinase; Reviewed
Probab=42.12 E-value=21 Score=29.66 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=28.4
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCCc--hhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHTH--GQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VSP--lInv~RwSAL~lGI~YGa~ 49 (153)
|+++||...++.-...+-=-+|..-...| .+-..=-.++-.|+.||..
T Consensus 139 G~I~PG~~l~~~aL~~~Ta~Lp~~~~~~~~~~~g~~T~~ai~sG~~~~~~ 188 (244)
T PRK13320 139 GLISPGLEMRFKALHEFTARLPLVTIEGPIPLIGRSTEECIRSGVVWGCV 188 (244)
T ss_pred EEEchhHHHHHHHHHHhhccCCcCccCCCCCcCCcCHHHHHHHHHHHHHH
Confidence 78999998877665544333432111111 1222235788899999975
No 41
>PRK13331 pantothenate kinase; Reviewed
Probab=41.27 E-value=27 Score=29.76 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=28.7
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCC----CCchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQ----HTHGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~----VSPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-.-.+-=-|| .+. +.+.|--.=-.++-.|++||...
T Consensus 138 G~I~PG~~l~~~AL~~~Ta~Lp-~v~~~~~~~~~iG~nT~~ai~sGi~~g~~g 189 (251)
T PRK13331 138 GAILPGLGLQLRSLADKTAALP-QVELPPPLPPRWATNTQEAIQSGVIYTILA 189 (251)
T ss_pred EEECccHHHHHHHHHHhhhcCC-CCccccCCCcccCCCHHHHHHHHHHHHHHH
Confidence 7899999877654433322233 222 22333344457888999999753
No 42
>PRK13333 pantothenate kinase; Reviewed
Probab=41.06 E-value=23 Score=29.43 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=26.9
Q ss_pred CccCCCccccHHHHHHhhhhcCCC----CCCCchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGE----CQHTHGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~----v~VSPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-...+-=-||-+ ++.+.+ =-.=-.++-.|++||..-
T Consensus 108 G~I~PGl~l~~~aL~~~Ta~Lp~~~~~~~~~~~l-~~nT~~AI~sGi~~~~~~ 159 (206)
T PRK13333 108 GFILPGIAAYKKAYKKISPRLKQPFNAQISLDAL-PQNTRDAISYGVIKSIIL 159 (206)
T ss_pred EEECccHHHHHHHHHHhhcCCCCccccCCCcccC-CCCHHHHHHHHHHHHHHH
Confidence 789999988775543333234411 111111 111257888899988753
No 43
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=40.94 E-value=1.6e+02 Score=22.40 Aligned_cols=8 Identities=25% Similarity=0.035 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q psy4037 41 SAGILYGV 48 (153)
Q Consensus 41 ~lGI~YGa 48 (153)
.+.|+|+.
T Consensus 14 nF~il~~i 21 (159)
T PRK13461 14 NFIILLLI 21 (159)
T ss_pred HHHHHHHH
Confidence 33333333
No 44
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.62 E-value=3e+02 Score=25.09 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4037 66 AQKKAIKDAKLAEEKK 81 (153)
Q Consensus 66 akEKlI~qAK~a~aKk 81 (153)
..++..++++.+|+++
T Consensus 46 ~a~~ea~~~~~~~e~~ 61 (445)
T PRK13428 46 TAADRLAEADQAHTKA 61 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444454444443
No 45
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=39.28 E-value=8.3 Score=32.18 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=33.8
Q ss_pred ccHHHHHHhhhhcCCCCCCCchh-----hhhhH----------HHHHHHHHHhhhhhhhccHH
Q psy4037 10 ISFSQMLLKKIFRHGECQHTHGQ-----HFARW----------TMLSAGILYGVSRQSSLEKK 57 (153)
Q Consensus 10 ~~f~~~l~~~i~~~~~v~VSPlI-----nv~Rw----------SAL~lGI~YGa~Hqs~Lk~~ 57 (153)
+.|-+.++.-- +||+||.+=+- ..+|= +..+.||+||-|-+.-|++-
T Consensus 90 V~l~~~v~~~~-~PG~vQLAGGTN~~Tv~~Lk~~gl~~~~~~~~~~iaGVAyGsyARkll~p~ 151 (183)
T PF12617_consen 90 VKLAQKVLSAK-PPGPVQLAGGTNAHTVEKLKQMGLLQPPPSSSAFIAGVAYGSYARKLLQPI 151 (183)
T ss_pred HHHHHHHhhcC-CCCceEecCccchhHHHHHHHccCcCCCccccCCCceeeehHHHHHHHHHH
Confidence 45666654322 88888887653 34555 66788999999999998876
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.25 E-value=1.2e+02 Score=23.09 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4037 38 TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRAN 84 (153)
Q Consensus 38 SAL~lGI~YGa~Hqs~Lk~~aeeeRe~eakEKlI~qAK~a~aKk~~a 84 (153)
.+|++|++=|+.-.++.++.....+..+ +.+++++.+-+.-++.
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~---~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLE---QELEQAKQELEQYKQE 47 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHH---HHHHHHHHHHHHHHHH
Confidence 5688899999988888776654433322 3334455444444433
No 47
>KOG0163|consensus
Probab=38.15 E-value=2.2e+02 Score=29.67 Aligned_cols=7 Identities=57% Similarity=0.534 Sum_probs=3.0
Q ss_pred HHhhhhc
Q psy4037 16 LLKKIFR 22 (153)
Q Consensus 16 l~~~i~~ 22 (153)
|.++|-.
T Consensus 880 lv~~IK~ 886 (1259)
T KOG0163|consen 880 LVKKIKM 886 (1259)
T ss_pred HHHHhcc
Confidence 4444443
No 48
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=37.32 E-value=49 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhhhhccHHHHHHHH
Q psy4037 38 TMLSAGILYGVSRQSSLEKKEEKLRV 63 (153)
Q Consensus 38 SAL~lGI~YGa~Hqs~Lk~~aeeeRe 63 (153)
.++++..+|+.+..+|+++++.+..+
T Consensus 19 v~t~~~~l~awwKNN~vT~ka~~q~~ 44 (47)
T PF04688_consen 19 VFTIVTALYAWWKNNYVTKKAKKQKQ 44 (47)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 34556678999999999998766544
No 49
>PRK13324 pantothenate kinase; Reviewed
Probab=37.01 E-value=32 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=28.6
Q ss_pred CccCCCccccHHHHHHhhhhcCC---CCCCC-chhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHG---ECQHT-HGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~---~v~VS-PlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...+..-...+-=-||. ..+.+ ++-|. -.++-.|++||..-
T Consensus 149 G~I~PG~~l~~~aL~~~Ta~Lp~v~~~~~~~~~g~nT--~~ai~sG~~~g~~~ 199 (258)
T PRK13324 149 GSIMPGVKLSLNALCQGASQLSSVTIVKPEVAIGYDT--KTNIRSGLYYGHLG 199 (258)
T ss_pred EEECccHHHHHHHHHHHHhcCCCCCccCCCCcCCCCH--HHHHHHHHHHHHHH
Confidence 78999998876554444322331 11111 23444 47999999999753
No 50
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=36.77 E-value=21 Score=28.33 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=28.0
Q ss_pred CccCCCccccHHHHHHhhhhcC-----CC--CCCCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRH-----GE--CQHTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~-----~~--v~VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||...++.-...+-=.+| .+ ...-++-|+ -.++-.|++||..
T Consensus 145 G~I~PG~~~~~~aL~~~T~~Lp~v~~~~~~~~~~~~g~nT--~~aI~sG~~~g~~ 197 (206)
T PF03309_consen 145 GAILPGLQLMLKALHSNTAQLPKVELDKPAEDPSLLGRNT--QEAIQSGILYGLV 197 (206)
T ss_dssp EEEEE-HHHHHHHHHHHSTT----HHHCCHSTSSSSBSSH--HHHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHhhccCCCccccCcccccCCCcCCH--HHHHHHHHHHHHH
Confidence 7899999988877666544454 22 122223333 4788899999864
No 51
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.85 E-value=2.2e+02 Score=22.57 Aligned_cols=32 Identities=6% Similarity=0.134 Sum_probs=17.8
Q ss_pred CCCccc-cHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHHHh
Q psy4037 5 IPGFTI-SFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYG 47 (153)
Q Consensus 5 ~pg~t~-~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~YG 47 (153)
.|.+.. |||-++.+- +|+|+=.-+++-.++|+
T Consensus 22 mp~ld~~t~~~q~~~~-----------lI~F~iL~~ll~k~l~~ 54 (181)
T PRK13454 22 MPQLDFSTFPNQIFWL-----------LVTLVAIYFVLTRVALP 54 (181)
T ss_pred CCCCcHHhcchHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 456666 577666553 34554444445555566
No 52
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=35.84 E-value=22 Score=25.81 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhhhccHHHHHHHHH
Q psy4037 39 MLSAGILYGVSRQSSLEKKEEKLRVI 64 (153)
Q Consensus 39 AL~lGI~YGa~Hqs~Lk~~aeeeRe~ 64 (153)
+.++..+|+.+..+|+++++.+..++
T Consensus 44 ~t~~~~l~~wwKNN~vT~k~~~~~~~ 69 (75)
T TIGR01592 44 FTIGVSLWTWWKNNYITRKGKKQKQK 69 (75)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 34556689999999999998665553
No 53
>PRK13322 pantothenate kinase; Reviewed
Probab=35.42 E-value=37 Score=28.27 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=28.9
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCC---CchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQH---THGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~V---SPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-...+-=-+|. +.. ++.+-..=-.++-.|++||...
T Consensus 141 G~I~PG~~l~~~aL~~~Ta~Lp~-v~~~~~~~~~g~~T~~ai~sG~~~~~~~ 191 (246)
T PRK13322 141 GYICPGLYLMRDALRTHTRRIRY-DDGTADSLSPGRNTVDAVERGCLLMLRG 191 (246)
T ss_pred eEEccCHHHHHHHHHhhhhcCCC-CcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 78999998877655443333332 221 2222222368899999999754
No 54
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=34.99 E-value=47 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=24.9
Q ss_pred ccHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHH
Q psy4037 10 ISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGI 44 (153)
Q Consensus 10 ~~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI 44 (153)
+||-+.|-+.|+-||+- +.++...+.|+.++=+
T Consensus 2 ~sf~~~l~esIftPG~t--p~li~a~n~sF~~L~~ 34 (75)
T PF08636_consen 2 ASFFEELWESIFTPGTT--PTLIIATNVSFAALFL 34 (75)
T ss_pred chHHHHHHHHccCCCCC--hHHHHHHHHHHHHHHH
Confidence 47999999999999983 2347888888765433
No 55
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=34.42 E-value=36 Score=28.22 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=28.1
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCC---CchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQH---THGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~V---SPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||...++.-...+-=-||. +.. ++.+-..=-.++-.|++||..
T Consensus 141 G~I~PG~~l~~~aL~~~Ta~Lp~-v~~~~~~~~~g~~T~~ai~sG~~~g~~ 190 (243)
T TIGR00671 141 GAIAPGLGISLHALKDRAAALPK-FEIARPDEVLGKSTREAVQSGAVYGVL 190 (243)
T ss_pred EEECccHHHHHHHHHhhHhcCCC-CCcCCCCccCCCCHHHHHHHHHHHHHH
Confidence 78999998877654443333432 221 222222225788999999975
No 56
>KOG4364|consensus
Probab=33.62 E-value=2.6e+02 Score=28.33 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q psy4037 98 LMEEKKEEKLRVIRAQKKAIKDAKLAEEKKR 128 (153)
Q Consensus 98 ~~~~kkE~~~Re~ea~~K~~rDaklAeEKkr 128 (153)
.||.+.|...+..|.+.|..+-.--|+|++.
T Consensus 338 ~~Erkee~~rk~deerkK~e~ke~ea~E~rk 368 (811)
T KOG4364|consen 338 IMERKEEKSRKSDEERKKLESKEVEAQELRK 368 (811)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Confidence 4788888888888887777774444444433
No 57
>PRK12705 hypothetical protein; Provisional
Probab=31.91 E-value=4.5e+02 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.025 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhccHH
Q psy4037 32 QHFARWTMLSAGILYGVSRQSSLEKK 57 (153)
Q Consensus 32 Inv~RwSAL~lGI~YGa~Hqs~Lk~~ 57 (153)
+=|+=.+.|++|++|-++.++++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (508)
T PRK12705 8 VILLLLIGLLLGVLVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888877777765544
No 58
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=31.79 E-value=28 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=20.2
Q ss_pred CCCccccHHHHHHhhhhcCCCCCCCch
Q psy4037 5 IPGFTISFSQMLLKKIFRHGECQHTHG 31 (153)
Q Consensus 5 ~pg~t~~f~~~l~~~i~~~~~v~VSPl 31 (153)
-|--|.+||++|...+--|..+ ..|-
T Consensus 9 Yp~~~~~Fp~~L~~lL~~~~~~-L~p~ 34 (52)
T PF08158_consen 9 YPKETKDFPQELIDLLRNHHTV-LDPD 34 (52)
T ss_pred cHHHHHHHHHHHHHHHHhcccc-CCHH
Confidence 4778899999999999877764 3444
No 59
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=31.61 E-value=33 Score=29.92 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHhhhhh
Q psy4037 35 ARWTMLSAGILYGVSRQ 51 (153)
Q Consensus 35 ~RwSAL~lGI~YGa~Hq 51 (153)
.=|+.+++|++||+.|=
T Consensus 12 ~~~~l~~~~f~yG~~HA 28 (279)
T PRK10019 12 NAWFFIPSAILLGALHG 28 (279)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 56999999999999984
No 60
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=30.86 E-value=2.3e+02 Score=21.31 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=43.4
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHHHhhhhhhhccHHHHH--------------HHHH-HH
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGVSRQSSLEKKEEK--------------LRVI-RA 66 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~YGa~Hqs~Lk~~aee--------------eRe~-ea 66 (153)
||++|..+++.+.. .| ++ -||--|.+||+...-. -.++ +.
T Consensus 7 dy~~P~l~~~~~~~-------------~~---iG---------kyG~~~~~yLke~~p~~Y~~ll~~g~L~~~l~eid~~ 61 (111)
T PF14198_consen 7 DYLIPNLTLPEEEE-------------RP---IG---------KYGRMRKRYLKEHKPILYNNLLLSGKLNEHLAEIDEQ 61 (111)
T ss_pred CEeccccccCCccc-------------cc---cc---------HHHHHHHHHHHHhHHHHHHHHHHcchHHHHHHHHHHH
Confidence 78899888776543 11 12 3688888888744211 1111 22
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhccchHHH-HHHH
Q psy4037 67 QKKAIKDAKLAEEKKRANEGLLFKKGQSIWA-LMEE 101 (153)
Q Consensus 67 kEKlI~qAK~a~aKk~~a~~el~~~~~si~~-~~~~ 101 (153)
.+..+++--....++.-.-++|++.|+--|. .|.+
T Consensus 62 A~e~~e~l~~q~~~~~gvtE~LK~~dqm~wv~~mN~ 97 (111)
T PF14198_consen 62 AQERFERLVEQMAEKEGVTEELKAEDQMEWVRRMNN 97 (111)
T ss_pred HHHHHHHHHHHHHHhcCCcHhhhhcCHHHHHHHHHH
Confidence 2333455555667777777888888876553 3443
No 61
>PRK09609 hypothetical protein; Provisional
Probab=30.46 E-value=1.3e+02 Score=27.07 Aligned_cols=40 Identities=18% Similarity=0.006 Sum_probs=20.3
Q ss_pred HHHHHHHHhhh---hhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy4037 39 MLSAGILYGVS---RQSSLEKKEEKLRVIRAQKKAIKDAKLAE 78 (153)
Q Consensus 39 AL~lGI~YGa~---Hqs~Lk~~aeeeRe~eakEKlI~qAK~a~ 78 (153)
+-..|+.||.. -++.++.--..+.+..+=+.+|+.-|..|
T Consensus 86 a~l~GlI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i~~~~~~~ 128 (312)
T PRK09609 86 AMVYGFIPGIVGWFFFKFGKKFFGKESRIKRYDNKIFKQKEQY 128 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44788888855 23334333344444444444445444444
No 62
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=28.86 E-value=59 Score=27.01 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=29.3
Q ss_pred CccCCCccc-cHHHHHHhhhhcCCCCCCCchhhhhhHHHHHH----HHHHhhhhhhhccHHHHH
Q psy4037 2 GYLIPGFTI-SFSQMLLKKIFRHGECQHTHGQHFARWTMLSA----GILYGVSRQSSLEKKEEK 60 (153)
Q Consensus 2 ~~~~pg~t~-~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~l----GI~YGa~Hqs~Lk~~aee 60 (153)
||+||=-+. .+-..+.+|+......+ .-+-.||..|++ ..+.|..-..++.|-..-
T Consensus 83 gwiCP~g~~~el~~~l~~k~~~~~~~~---~~~~~ky~vl~~~l~~s~~~g~~~~~~~~p~~~l 143 (255)
T TIGR02163 83 SWVCPVNLVTDFAAWLRRKLGINKIIK---LPRNLRYWVLVLFLLLSFLSGLLIWEWFNPVGIL 143 (255)
T ss_pred eccCCchHHHHHHHHHHHhhccccccc---cchhHHHHHHHHHHHHHHHHhhhheeeeCHHHHH
Confidence 789995443 23334444443322222 234578876544 334566666777776443
No 63
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=27.48 E-value=1.2e+02 Score=22.30 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4037 32 QHFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKK 81 (153)
Q Consensus 32 Inv~RwSAL~lGI~YGa~Hqs~Lk~~aeeeRe~eakEKlI~qAK~a~aKk 81 (153)
+=|+-||... |.||....+--. .+++.=++.|++||....++
T Consensus 46 v~fG~Ysl~~--lgy~v~tFnDcp------eA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 46 VSFGCYSLFT--LGYGVATFNDCP------EAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHHHHHHH--HHHhhhccCCCH------HHHHHHHHHHHHHHHHHHHc
Confidence 4444444433 457777666532 23344567788888766554
No 64
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.44 E-value=46 Score=27.52 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhh
Q psy4037 37 WTMLSAGILYGVSR 50 (153)
Q Consensus 37 wSAL~lGI~YGa~H 50 (153)
|++++++.+||+.|
T Consensus 2 l~ll~laf~~G~~H 15 (282)
T PF03824_consen 2 LSLLLLAFLYGLLH 15 (282)
T ss_pred HHHHHHHHHHHHHH
Confidence 78889999999887
No 65
>PRK12488 acetate permease; Provisional
Probab=25.62 E-value=67 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=24.4
Q ss_pred ccHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHH
Q psy4037 10 ISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGIL 45 (153)
Q Consensus 10 ~~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~ 45 (153)
.+|+..+.++.+.++...-...+++.||+.++.|++
T Consensus 380 t~is~Diy~~~~~~~~~s~~~~l~v~Ri~~vvvgv~ 415 (549)
T PRK12488 380 SAVSHDLYACVIRKGQASEAQEMRVSKIATLGIGLL 415 (549)
T ss_pred HHHHHHHHHHhcCCCCCChHHhhHHHHHHHHHHHHH
Confidence 456666666655554444445699999999887754
No 66
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=24.80 E-value=64 Score=24.79 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=22.9
Q ss_pred CCccCCC--ccccHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHHHhh
Q psy4037 1 MGYLIPG--FTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGV 48 (153)
Q Consensus 1 ~~~~~pg--~t~~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~YGa 48 (153)
||| ||. |.-.=.+.++..+.-.++-....+ +-+|-..+..++++.
T Consensus 1 ~~~-~~~~~~~~~~~~~l~~~~~~gd~~~~~~l--~~~y~~~l~~~~~~~ 47 (192)
T PRK09643 1 MGY-CPAVGFGERSDAELLAAHVAGDRYAFGEL--FRRHHRRLWAVARRT 47 (192)
T ss_pred CCC-CcccCCCCcCHHHHHHHHHCcCHHHHHHH--HHHHHHHHHHHHHHH
Confidence 787 774 433334556666655544443333 344555555544443
No 67
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=24.53 E-value=36 Score=32.28 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhhh
Q psy4037 38 TMLSAGILYGVSRQ 51 (153)
Q Consensus 38 SAL~lGI~YGa~Hq 51 (153)
|+.+.|+.||..|-
T Consensus 140 sA~L~GlIyGl~r~ 153 (477)
T PRK12821 140 GAILTGMIAGILRE 153 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777888887764
No 68
>KOG2072|consensus
Probab=24.43 E-value=5.1e+02 Score=26.99 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q psy4037 58 EEKLRVIRAQKKAIKDAKLAEEKKRANEGLLF 89 (153)
Q Consensus 58 aeeeRe~eakEKlI~qAK~a~aKk~~a~~el~ 89 (153)
..+..++-+.+++|+.=|.-+++.+..++.-.
T Consensus 560 ~~E~krilaRk~liE~rKe~~E~~~~~re~Ee 591 (988)
T KOG2072|consen 560 DKEHKRILARKSLIEKRKEDLEKQNVEREAEE 591 (988)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35557777888999998888888766554433
No 69
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=24.40 E-value=29 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.8
Q ss_pred CccCCCccccHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIF 21 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~ 21 (153)
+..+|||...||.+|.+.|-
T Consensus 12 ~~~~~~Fs~~~P~~L~~~is 31 (118)
T PF10256_consen 12 SGIFPQFSTEYPGELSGYIS 31 (118)
T ss_pred CCcCCccCccCCHhhcCCCC
Confidence 56789999999999987754
No 70
>KOG1029|consensus
Probab=24.27 E-value=4e+02 Score=27.83 Aligned_cols=11 Identities=36% Similarity=0.444 Sum_probs=4.6
Q ss_pred HHHHHHHHhhH
Q psy4037 75 KLAEEKKRANE 85 (153)
Q Consensus 75 K~a~aKk~~a~ 85 (153)
+.+++||..++
T Consensus 352 reE~ekkerer 362 (1118)
T KOG1029|consen 352 REEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 71
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=23.43 E-value=73 Score=30.17 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=27.6
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCCC-chhhhhhHHHHHHHHHHhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQHT-HGQHFARWTMLSAGILYGV 48 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~VS-PlInv~RwSAL~lGI~YGa 48 (153)
||++||+..++.-...+-=-+|.. ... +.+=-.=-.++-.|++||.
T Consensus 474 G~I~PG~~l~~~aL~~~Ta~Lp~~-~~~~~~~g~~T~~ai~sG~~~~~ 520 (592)
T PRK13325 474 GTIMPGFHLMKESLAVRTANLNRH-AGKRYPFPTTTGNAVASGMMDAV 520 (592)
T ss_pred EEECCcHHHHHHHHHhhhhcCCCC-cccccCCCCCHHHHHHHHHHHHH
Confidence 799999988776655544334421 111 1111122578889999987
No 72
>KOG2412|consensus
Probab=21.99 E-value=4.2e+02 Score=26.10 Aligned_cols=13 Identities=0% Similarity=-0.028 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhh
Q psy4037 36 RWTMLSAGILYGV 48 (153)
Q Consensus 36 RwSAL~lGI~YGa 48 (153)
-++=+..-+.||-
T Consensus 172 ~~~e~~~~~~~r~ 184 (591)
T KOG2412|consen 172 KLSETRKEVKRRL 184 (591)
T ss_pred hHHHHHHHHHHHH
Confidence 3455556677773
No 73
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.62 E-value=7e+02 Score=23.66 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=3.4
Q ss_pred HHHHHhhh
Q psy4037 42 AGILYGVS 49 (153)
Q Consensus 42 lGI~YGa~ 49 (153)
+|+.-|+.
T Consensus 14 ~~~~~~~~ 21 (475)
T PRK10361 14 VGVAIGWL 21 (475)
T ss_pred HHHHHHHH
Confidence 44444443
No 74
>PRK09395 actP acetate permease; Provisional
Probab=21.45 E-value=96 Score=28.32 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=23.3
Q ss_pred cHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHH
Q psy4037 11 SFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGIL 45 (153)
Q Consensus 11 ~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~ 45 (153)
+|+..+.++++.+++..-...+++.|++.++.|++
T Consensus 383 ~~~~Diy~~~~~~~~~s~~~~l~v~Ri~~v~igi~ 417 (551)
T PRK09395 383 AVSHDLYANVIKKGKATERDELRVSKITTLVLGVV 417 (551)
T ss_pred HHHHHHHHHhccCccccchhhhhHHHHHHHHHHHH
Confidence 45666666655443444455799999999987753
No 75
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=21.26 E-value=65 Score=28.92 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhhh
Q psy4037 36 RWTMLSAGILYGVSR 50 (153)
Q Consensus 36 RwSAL~lGI~YGa~H 50 (153)
=|++++++++||+.|
T Consensus 54 ~w~li~~SflyGvlH 68 (303)
T COG2215 54 GWTLIPLSFLYGVLH 68 (303)
T ss_pred HHHHHHHHHHHHHHh
Confidence 499999999999998
No 76
>PLN02316 synthase/transferase
Probab=20.97 E-value=2e+02 Score=29.62 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHhhhhhhccccccceeeCcccc
Q psy4037 104 EEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAISPYEV 149 (153)
Q Consensus 104 E~~~Re~ea~~K~~rDaklAeEKkr~~~~~~~~~~~~~~~~~~~~~ 149 (153)
|...||+..++|+.|-|+..+|.|......-+...++-|-+.|.++
T Consensus 442 ~~~~~~~~~r~k~~~~a~~~ae~k~~~~~~~l~~~~~~~~teP~~~ 487 (1036)
T PLN02316 442 ERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQKHIVYTEPLEV 487 (1036)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceEEEecCCCC
Confidence 4455566666788888888888887777777777777777888654
No 77
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=20.94 E-value=6.7e+02 Score=23.40 Aligned_cols=6 Identities=17% Similarity=0.047 Sum_probs=2.7
Q ss_pred hhhhHH
Q psy4037 33 HFARWT 38 (153)
Q Consensus 33 nv~RwS 38 (153)
++..|.
T Consensus 225 k~m~~m 230 (429)
T PRK00247 225 KFLIVM 230 (429)
T ss_pred HHHHHH
Confidence 344544
No 78
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=20.82 E-value=1.6e+02 Score=19.71 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=14.1
Q ss_pred HHHHHHHhhhhhhhccHHHHHHHHHHHHH
Q psy4037 40 LSAGILYGVSRQSSLEKKEEKLRVIRAQK 68 (153)
Q Consensus 40 L~lGI~YGa~Hqs~Lk~~aeeeRe~eakE 68 (153)
+..|..-|...+++.+-......++..+|
T Consensus 26 ~~~g~~~~~~~y~~~~~~r~~~~~~~e~~ 54 (59)
T PF14880_consen 26 VYGGGLTVYTVYSYFKYNRRRRAEWIERE 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666654443333333333
No 79
>PHA02047 phage lambda Rz1-like protein
Probab=20.78 E-value=4.1e+02 Score=20.63 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhh-hhhccH
Q psy4037 37 WTMLSAGILYGVSR-QSSLEK 56 (153)
Q Consensus 37 wSAL~lGI~YGa~H-qs~Lk~ 56 (153)
..++++|-.|||.- |+++-.
T Consensus 11 ~v~~~~g~~y~~~~~~r~~g~ 31 (101)
T PHA02047 11 LVVVALGASYGFVQSYRALGI 31 (101)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 34678899999988 777643
No 80
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.49 E-value=2.7e+02 Score=20.49 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q psy4037 99 MEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127 (153)
Q Consensus 99 ~~~kkE~~~Re~ea~~K~~rDaklAeEKk 127 (153)
+-=.++-.-+|.|.++|..|++.++.-++
T Consensus 42 wkLaK~ie~~ere~K~k~Kr~~~i~k~rr 70 (74)
T PF15086_consen 42 WKLAKAIEKEEREKKKKAKRQANIAKARR 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777788888999999999887665
No 81
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=20.05 E-value=4.6e+02 Score=20.95 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=5.9
Q ss_pred HHHHhhhhhhhc
Q psy4037 43 GILYGVSRQSSL 54 (153)
Q Consensus 43 GI~YGa~Hqs~L 54 (153)
.+++|+|..-+-
T Consensus 13 ~~~~g~y~~G~~ 24 (162)
T PF10721_consen 13 ALLWGAYAHGYA 24 (162)
T ss_pred HHHHHHHHhccH
Confidence 345676544333
Done!