Query psy4037
Match_columns 153
No_of_seqs 121 out of 140
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 23:45:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nrh_A Transcriptional activat 57.1 4.2 0.00014 32.3 1.6 47 2-49 109-159 (219)
2 3bex_A Type III pantothenate k 53.5 5.7 0.00019 31.6 1.8 48 2-50 146-196 (249)
3 2h3g_X Biosynthetic protein; p 52.2 5.2 0.00018 32.3 1.4 47 2-49 148-197 (268)
4 3djc_A Type III pantothenate k 40.1 11 0.00038 30.5 1.6 48 2-49 150-199 (266)
5 1v5i_B POIA1, IA-1=serine prot 39.1 5.6 0.00019 26.2 -0.3 24 4-27 40-65 (76)
6 1hcw_A BBA1; growth response p 37.9 14 0.00048 21.4 1.3 24 2-25 1-24 (26)
7 4egx_A Kinesin-like protein KI 31.0 94 0.0032 23.8 5.5 16 96-111 21-36 (184)
8 2f9w_A Pantothenate kinase; CO 25.7 22 0.00074 29.1 1.0 48 2-50 163-217 (271)
9 3cnq_P Subtilisin BPN'; unclea 23.3 22 0.00077 22.8 0.6 23 5-27 43-65 (80)
10 1f5n_A Interferon-induced guan 22.7 4.2E+02 0.014 23.8 10.5 52 78-129 507-561 (592)
11 1rh5_C Secbeta; protein transl 20.2 48 0.0016 21.6 1.7 21 29-49 23-43 (53)
No 1
>2nrh_A Transcriptional activator, putative, BAF family; structural genomics, unknown function, putative transcription activator, PSI-2; 2.30A {Campylobacter jejuni} SCOP: c.55.1.13 c.55.1.13
Probab=57.13 E-value=4.2 Score=32.33 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred CccCCCccccHHHHHHhhhhcC----CCCCCCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRH----GECQHTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~----~~v~VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||..+++.-...+-=-|| |++..+.+ =-.=-+++-.||+||..
T Consensus 109 G~I~PGi~l~~~AL~~~Ta~L~~~~~p~v~~~~i-g~nT~~ai~sGi~~g~~ 159 (219)
T 2nrh_A 109 GFILPGIANYKKIYSHISPRLKSEFNTQVSLDAF-PQKTMDALSYGVFKGIY 159 (219)
T ss_dssp EEEEECHHHHHHHHHHHCC-----CCTTCCSSSC-CCSHHHHHHHHHHHHHH
T ss_pred EEECccHHHHHHHHHHHHhcCCCCCCCccccccc-ccCHHHHHHHHHHHHHH
Confidence 7899999998876655432332 33443322 12234788999999985
No 2
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=53.51 E-value=5.7 Score=31.56 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=28.8
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCC---CCchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQ---HTHGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~---VSPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||..+++.-...+-=-|| .+. ..+.+=-.=-+++-.||+||..-
T Consensus 146 G~I~PGi~l~~~aL~~~ta~Lp-~v~~~~~~~~~g~nT~~ai~sGi~~g~~g 196 (249)
T 3bex_A 146 GAILPGFFMMVHSLFRGTAKLP-LVEVKPADFVVGKDTEENIRLGVVNGSVY 196 (249)
T ss_dssp EEEEECHHHHHHHHHHTCSSCC-CCCCCCCCSSSBSSHHHHHHHHHHHHHHH
T ss_pred EEECccHHHHHHHHHHhhhcCC-CCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999998866544432232 221 11222223357899999999753
No 3
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=52.16 E-value=5.2 Score=32.34 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=26.0
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCC---CCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQ---HTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~---VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||..+++.-...+-=-|| .+. ..+.+=-.=-+++-.||+||..
T Consensus 148 G~I~PGi~l~~~AL~~~Ta~Lp-~v~~~~p~~~~g~nT~~ai~sGi~~g~~ 197 (268)
T 2h3g_X 148 GVITPGIMISAEALYSRAAKLP-RIEITKPSSVVGKNTVSAMQSGILYGYV 197 (268)
T ss_dssp EEEEECHHHHHHHHHC--------CCCCCCSCSSCSSHHHHHHHHHHHHHH
T ss_pred EEECccHHHHHHHHHHHHhcCC-CccccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 7899999998865543321121 111 1122222335789999999975
No 4
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=40.11 E-value=11 Score=30.47 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=28.5
Q ss_pred CccCCCccccHHHHHHhhhhcCC--CCCCCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHG--ECQHTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~--~v~VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||..+++.-...+-=-||. .....+.+=-.=-+++-.||+||..
T Consensus 150 G~I~PGi~l~~~aL~~~Ta~Lp~v~~~~~~~~~g~nT~~ai~sGi~~g~~ 199 (266)
T 3djc_A 150 GAILPGLRLSADALSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVL 199 (266)
T ss_dssp EEEEECHHHHHHHHHHSCSSCCCCCCCCCSCSCBSSHHHHHHHHHHHHHH
T ss_pred EEECccHHHHHHHHHHhhhcCCCcccCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 78999999888765544322332 0011112223335789999999874
No 5
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=39.14 E-value=5.6 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.5
Q ss_pred cCCCccccHHHHHHhhhhcC--CCCC
Q psy4037 4 LIPGFTISFSQMLLKKIFRH--GECQ 27 (153)
Q Consensus 4 ~~pg~t~~f~~~l~~~i~~~--~~v~ 27 (153)
++.||+++||+..++.|-.+ |.|.
T Consensus 40 ~~~Gfa~~~~~~~l~~l~~~~~p~V~ 65 (76)
T 1v5i_B 40 GMKGFAGELTPQSLTKFQGLQGDLID 65 (76)
T ss_dssp TEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred ceeEEEEEcCHHHHHHHHhcCCCCCc
Confidence 68899999999999999888 5543
No 6
>1hcw_A BBA1; growth response protein, de novo protein design, supersecondary motif; HET: PYA; NMR {} SCOP: k.14.1.1 PDB: 1t8j_A*
Probab=37.93 E-value=14 Score=21.38 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.5
Q ss_pred CccCCCccccHHHHHHhhhhcCCC
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGE 25 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~ 25 (153)
.|-.|..|.|-|..|.+.+-+|.-
T Consensus 1 ~ytvps~tfsrsdelakllrlhag 24 (26)
T 1hcw_A 1 XYTVPSXTFSRSDELAKLLRLHAG 24 (26)
T ss_dssp -CCSSSCCCSSSHHHHHHHHHCCC
T ss_pred CcccCcccccccHHHHHHHHHhcc
Confidence 478999999999999999988853
No 7
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=30.98 E-value=94 Score=23.79 Aligned_cols=16 Identities=44% Similarity=0.389 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4037 96 WALMEEKKEEKLRVIR 111 (153)
Q Consensus 96 ~~~~~~kkE~~~Re~e 111 (153)
++-|...=|+++++.|
T Consensus 21 ~~el~~tWeeKl~~te 36 (184)
T 4egx_A 21 IAELNETWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3344444455555543
No 8
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=25.72 E-value=22 Score=29.06 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=27.7
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCCC------Cch-hhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQH------THG-QHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~V------SPl-Inv~RwSAL~lGI~YGa~H 50 (153)
|+++||..+++.-...+-=-||- +.. .++ |=-.=-.++-.||+||..-
T Consensus 163 G~I~PGi~l~~~AL~~~TA~Lp~-v~~~~~~~~~~~~iG~nT~~ai~sGi~~g~~g 217 (271)
T 2f9w_A 163 GYICPGMTLMRSQLRTHTRRIRY-DDAEARRALASLQPGQATAEAVERGCLLMLRG 217 (271)
T ss_dssp EEEEECHHHHHHHHHHHSSSCCC-CHHHHHHHTTCCSCBSSHHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhhhcCCC-ccccccccCccCCCCCCHHHHHHHHHHHHHHH
Confidence 78999999988665444322221 111 111 1122247889999999753
No 9
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=23.32 E-value=22 Score=22.79 Aligned_cols=23 Identities=0% Similarity=0.147 Sum_probs=20.3
Q ss_pred CCCccccHHHHHHhhhhcCCCCC
Q psy4037 5 IPGFTISFSQMLLKKIFRHGECQ 27 (153)
Q Consensus 5 ~pg~t~~f~~~l~~~i~~~~~v~ 27 (153)
+.||.+.||+.-++.|-.||.|.
T Consensus 43 ~~Gfaa~l~~~~~~~L~~~p~V~ 65 (80)
T 3cnq_P 43 VDAASATLNEKAVEELKKDPSVA 65 (80)
T ss_dssp SSEEEEECCHHHHHHHHTCTTEE
T ss_pred cEEEEEEcCHHHHHHHHhCCCcc
Confidence 78999999999999998888764
No 10
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.75 E-value=4.2e+02 Score=23.82 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=22.9
Q ss_pred HHHHHhhHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHh
Q psy4037 78 EEKKRANEGLLFKKGQSI---WALMEEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 129 (153)
Q Consensus 78 ~aKk~~a~~el~~~~~si---~~~~~~kkE~~~Re~ea~~K~~rDaklAeEKkr~ 129 (153)
.++++..+.-|..+..|. +.-|++|-|...+....++.-.=+.||.|.+...
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555443 2233333333333333333334456666655443
No 11
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=20.23 E-value=48 Score=21.55 Aligned_cols=21 Identities=0% Similarity=-0.026 Sum_probs=18.3
Q ss_pred CchhhhhhHHHHHHHHHHhhh
Q psy4037 29 THGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 29 SPlInv~RwSAL~lGI~YGa~ 49 (153)
+|.||+.....|+.|+++|+.
T Consensus 23 ~~giKi~P~~Vl~~si~~i~~ 43 (53)
T 1rh5_C 23 FSKIRVKPEHVIGVTVAFVII 43 (53)
T ss_dssp CCSCCCCHHHHHHHHHHHHHH
T ss_pred CCccccCCeehhhhHHHHHHH
Confidence 458999999999999999874
Done!