Query psy4037
Match_columns 153
No_of_seqs 121 out of 140
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 23:46:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4037.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4037hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bexa2 c.55.1.13 (A:119-245) 61.6 1.9 0.00014 29.7 2.0 49 2-50 25-75 (127)
2 d2nrha2 c.55.1.13 (A:83-208) T 51.0 2.7 0.0002 28.9 1.4 49 2-50 25-76 (126)
3 d1h41a2 d.92.2.2 (A:5-151) alp 44.8 3.4 0.00024 28.8 1.1 13 42-54 118-130 (147)
4 d1l8na2 d.92.2.2 (A:4-142) alp 40.8 4.2 0.00031 27.9 1.1 13 42-54 109-121 (139)
5 d1scjb_ d.58.3.2 (B:) Subtilis 37.5 4.4 0.00032 25.3 0.6 23 4-26 37-59 (71)
6 d1v5ib1 d.58.3.2 (B:1-72) Prot 20.6 8.8 0.00064 23.8 -0.3 19 4-22 40-58 (72)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 17.9 33 0.0024 18.6 1.8 13 39-51 8-20 (27)
8 d2f9wa1 c.55.1.13 (A:115-248) 17.5 32 0.0023 23.2 2.1 46 2-49 26-79 (134)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 14.8 42 0.003 18.7 1.8 14 36-49 10-23 (32)
10 d2fxua2 c.55.1.1 (A:147-371) A 9.4 1.2E+02 0.009 20.7 3.4 54 3-57 158-214 (225)
No 1
>d3bexa2 c.55.1.13 (A:119-245) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}
Probab=61.65 E-value=1.9 Score=29.72 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=30.8
Q ss_pred CccCCCccccHHHHHHhhhhcCC--CCCCCchhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHG--ECQHTHGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~--~v~VSPlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-+..+--.+|. .-.....+--.=-+++-.|+.||...
T Consensus 25 G~I~PG~~l~~~aL~~~Ta~Lp~~~~~~~~~~~g~~T~~ai~~G~~~g~~~ 75 (127)
T d3bexa2 25 GAILPGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVY 75 (127)
T ss_dssp EEEEECHHHHHHHHHHTCSSCCCCCCCCCCSSSBSSHHHHHHHHHHHHHHH
T ss_pred eEEecCHHHHHHHHHHhhhhhccccccccccccCCCHHHHHHHhHHHHHHH
Confidence 78999999888776655433332 11122223334468899999999765
No 2
>d2nrha2 c.55.1.13 (A:83-208) Type III pantothenate kinase, CoaX {Campylobacter jejuni [TaxId: 197]}
Probab=51.03 E-value=2.7 Score=28.86 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=27.0
Q ss_pred CccCCCccccHHHHHHhhhhcCCCCC--CC-chhhhhhHHHHHHHHHHhhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGECQ--HT-HGQHFARWTMLSAGILYGVSR 50 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~v~--VS-PlInv~RwSAL~lGI~YGa~H 50 (153)
|+++||...++.-+..+-=.+++.+. .+ +.+--.=-+++..|++||...
T Consensus 25 G~I~PGl~l~~~aL~~~ta~l~~~~~~~~~~~~~g~nT~~ai~~G~~~~~~~ 76 (126)
T d2nrha2 25 GFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYL 76 (126)
T ss_dssp EEEEECHHHHHHHHHHHCC-----CCTTCCSSSCCCSHHHHHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHhhhcccccccccCCcccccccHHHHHHHHHHHHHHH
Confidence 78999998777655544222333222 21 122222337899999998654
No 3
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=44.80 E-value=3.4 Score=28.81 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhhc
Q psy4037 42 AGILYGVSRQSSL 54 (153)
Q Consensus 42 lGI~YGa~Hqs~L 54 (153)
-|++||+||...+
T Consensus 118 rG~LYG~f~lLr~ 130 (147)
T d1h41a2 118 VGVLYGSFHLLRL 130 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHH
Confidence 4999999998765
No 4
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=40.81 E-value=4.2 Score=27.86 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=10.9
Q ss_pred HHHHHhhhhhhhc
Q psy4037 42 AGILYGVSRQSSL 54 (153)
Q Consensus 42 lGI~YGa~Hqs~L 54 (153)
.|++||++|...+
T Consensus 109 ~G~lYGvf~Ll~~ 121 (139)
T d1l8na2 109 AGVLYGVFHFLRL 121 (139)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 6999999998654
No 5
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=37.52 E-value=4.4 Score=25.26 Aligned_cols=23 Identities=4% Similarity=0.157 Sum_probs=20.7
Q ss_pred cCCCccccHHHHHHhhhhcCCCC
Q psy4037 4 LIPGFTISFSQMLLKKIFRHGEC 26 (153)
Q Consensus 4 ~~pg~t~~f~~~l~~~i~~~~~v 26 (153)
.++||++++|+.-++.|-.+|.|
T Consensus 37 ~i~gfs~~l~~~~~~~L~~~p~V 59 (71)
T d1scjb_ 37 YVNAAAATLDEKAVKELKKDPSV 59 (71)
T ss_dssp SSSEEEEEECHHHHHHHHTSTTE
T ss_pred ecceEEEEeCHHHHHHHHcCCCc
Confidence 58999999999999999888876
No 6
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=20.57 E-value=8.8 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.4
Q ss_pred cCCCccccHHHHHHhhhhc
Q psy4037 4 LIPGFTISFSQMLLKKIFR 22 (153)
Q Consensus 4 ~~pg~t~~f~~~l~~~i~~ 22 (153)
.+.||+++||+.-++.|-.
T Consensus 40 ~~~GFaa~l~e~~l~~lr~ 58 (72)
T d1v5ib1 40 GMKGFAGELTPQSLTKFQG 58 (72)
T ss_dssp TEEEEEEEECHHHHHHHHH
T ss_pred eeeEEEEecCHHHHHHHHh
Confidence 3789999999999998863
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.86 E-value=33 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhh
Q psy4037 39 MLSAGILYGVSRQ 51 (153)
Q Consensus 39 AL~lGI~YGa~Hq 51 (153)
+-+.|+||.+|.|
T Consensus 8 ~tl~glf~aayqq 20 (27)
T d2e74g1 8 ATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4568999999876
No 8
>d2f9wa1 c.55.1.13 (A:115-248) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.55 E-value=32 Score=23.23 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=25.5
Q ss_pred CccCCCccccHHHHHHhhhhcCCC--------CCCCchhhhhhHHHHHHHHHHhhh
Q psy4037 2 GYLIPGFTISFSQMLLKKIFRHGE--------CQHTHGQHFARWTMLSAGILYGVS 49 (153)
Q Consensus 2 ~~~~pg~t~~f~~~l~~~i~~~~~--------v~VSPlInv~RwSAL~lGI~YGa~ 49 (153)
|+++||....+.-+..+-=.+|-. ...+|.-+ =-+++..|++||..
T Consensus 26 G~I~PGl~l~~~aL~~~Ta~Lp~~~~~~~~~~~~~~~g~~--T~~ai~~G~~~~~~ 79 (134)
T d2f9wa1 26 GYICPGMTLMRSQLRTHTRRIRYDDAEARRALASLQPGQA--TAEAVERGCLLMLR 79 (134)
T ss_dssp EEEEECHHHHHHHHHHHSSSCCCCHHHHHHHTTCCSCBSS--HHHHHHHHHHHHHH
T ss_pred eEEeccHHHHHHHHHhhhhhcccccccccccccccchhhh--HHHHHHHHHHHHHH
Confidence 789999988776655443333311 01111222 24677778887753
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.85 E-value=42 Score=18.71 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHhhh
Q psy4037 36 RWTMLSAGILYGVS 49 (153)
Q Consensus 36 RwSAL~lGI~YGa~ 49 (153)
-+.+|++||+-|.-
T Consensus 10 vfialffgiavgii 23 (32)
T d2e74e1 10 VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe
Confidence 35688899888853
No 10
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.41 E-value=1.2e+02 Score=20.71 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=30.4
Q ss_pred ccCCCccccHHHHHHhhhhcCCCCCCCchhhhhhHHHHHHHHHHhh---hhhhhccHH
Q psy4037 3 YLIPGFTISFSQMLLKKIFRHGECQHTHGQHFARWTMLSAGILYGV---SRQSSLEKK 57 (153)
Q Consensus 3 ~~~pg~t~~f~~~l~~~i~~~~~v~VSPlInv~RwSAL~lGI~YGa---~Hqs~Lk~~ 57 (153)
-++|||+--+-..|...+.....+.|... .--++++-..|-.+|. +++.++++.
T Consensus 158 s~~~G~~~RL~~El~~~~~~~~~~~v~~~-~~~~~~aW~Ggsilasl~~f~~~~itk~ 214 (225)
T d2fxua2 158 TMYPGIADRMQKEITALAPSTMKIKIIAP-PERKYSVWIGGSILASLSTFQQMWITKQ 214 (225)
T ss_dssp GCSTTHHHHHHHHHHHHSCTTCCCCEECC-TTTTSHHHHHHHHHHHCGGGGGGSEEHH
T ss_pred ccCCchhHHHHhHHHHhhccccceEEecC-CCCCeeEEeCHhhhhcCccHhhEEEEHH
Confidence 46888776666665554332222222111 1235888888888876 566666654
Done!