RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4037
(153 letters)
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family
consists of several ATP synthase E chain sequences
which are components of the CF(0) subunit.
Length = 83
Score = 51.3 bits (123), Expect = 2e-09
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 34 FARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANE 85
R++ L AG++YG Q SL+KKEEK+R AQ+K I+ AK A KK+ +
Sbjct: 12 VLRYSALVAGVVYGAKHQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAK 63
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.6 bits (89), Expect = 8e-04
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 48 VSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKL 107
+ +K EEK + A+KKA + K E KK+A E KK + EE K+
Sbjct: 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK--KKADAAKKKAEEAKKAAE 1346
Query: 108 RVIRAQKKAIKDAKLAEEKKRANEVSRISLKK 139
+ A +A+ AEEK A E + KK
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 37.4 bits (86), Expect = 0.002
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
+K EE + A+KKA + K A+E K+A E KK E KK ++ + K
Sbjct: 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK--KKADEAKKAEEAKKADEAKKAEEAK 1534
Query: 115 KAIKDAKLAEEKKRANEVSR 134
KA +AK AEEKK+A+E+ +
Sbjct: 1535 KA-DEAKKAEEKKKADELKK 1553
Score = 35.9 bits (82), Expect = 0.006
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 50 RQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRV 109
+ +KK E+ + KK ++AK A+E K+ E K ++ A +KK ++ +
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Query: 110 IRAQKKAIKDAKLAEEKKRANEVSRISLKK 139
KKA +AK AEE K+A+E + KK
Sbjct: 1518 AEEAKKA-DEAKKAEEAKKADEAKKAEEKK 1546
Score = 35.5 bits (81), Expect = 0.008
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
+KK ++ + KK +AK AEE K+A+E KK + E KK E+ + K
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADE---AKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 115 KAIKDAKLAEEKKRANEVSRISLKKN 140
KA ++ K AEEKK+A E + KN
Sbjct: 1553 KA-EELKKAEEKKKAEEAKKAEEDKN 1577
Score = 34.7 bits (79), Expect = 0.016
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 50 RQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRV 109
+ + + + + A+KKA K AEEKK+A+E KK + ++K +E +
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE--AKKKAEE----DKKKADELKKA 1413
Query: 110 IRAQKKAIKDAKLAEEKKRANEVSR 134
A+KKA + K AEEKK+A+E +
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKK 1438
Score = 34.0 bits (77), Expect = 0.022
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 58 EEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFK---KGQSIWALMEEKKEEKLRVIRAQK 114
E K + A+KKA K AEE K+A E + A E+ + + + A+K
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 115 KAIKDAKLAEEKKRANEVSR 134
KA K AEEKK+A+E +
Sbjct: 1379 KADAAKKKAEEKKKADEAKK 1398
Score = 33.6 bits (76), Expect = 0.040
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 48 VSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEE-KKRANEGLLFKKGQSIWALMEEKK--- 103
+ +KK E+ + KK ++AK AEE KK+A E KK EE K
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA---KKADEAKKKAEEAKKAD 1486
Query: 104 EEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKK 139
E K + A+KKA + K AE KK+A+E + K
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Score = 33.2 bits (75), Expect = 0.047
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKK--EEKLRVIR 111
+K+E K + A+KKA + K E KK+A E KK + KK +E +
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK--KKADELKKAAAAKKKADEAKKKAE 1428
Query: 112 AQKKAIKDAKLAEEKKRANEVSR 134
+KKA + K AEE K+A+E +
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKK 1451
Score = 32.4 bits (73), Expect = 0.089
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
+KK ++ + KKA +AK AEE K+A+E KK + E+KK ++L+ K
Sbjct: 1509 KKKADEAKKAEEAKKA-DEAKKAEEAKKADE---AKKAE------EKKKADELKKAEELK 1558
Query: 115 KAIKDAKLAEEKKRANEVSRISLKKNHVA 143
KA ++ K AEE K+A E ++L+K A
Sbjct: 1559 KA-EEKKKAEEAKKAEEDKNMALRKAEEA 1586
Score = 32.0 bits (72), Expect = 0.12
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 57 KEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQ--- 113
K E+ + K ++ K AEE+K+ E L K+ + E KK E+ I+A
Sbjct: 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
Query: 114 KKAIKDAKLAEEKKRANEVSR 134
KKA +D K AEE K+A E +
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEK 1688
Score = 30.9 bits (69), Expect = 0.26
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEE-KKRANEGLLFKKGQSIWALMEEKK--------- 103
+KK E+ + KK ++AK A+E KK+A E KK + EE K
Sbjct: 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA---KKAEEAKKKAEEAKKADEAKKKA 1479
Query: 104 EEKLRVIRAQKKAIKDAKLAEEKKRANE 131
EE + A+KKA + K A+E K+A E
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Score = 30.5 bits (68), Expect = 0.33
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKK--EEKLRVIRA 112
+K +E + A+KKA + K AEEKK+A+E KK + E KK EE + A
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADE--AKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 113 QKKAIKDAKLAEEKKRANEVSR 134
+KKA ++AK A+E K+ E ++
Sbjct: 1463 KKKA-EEAKKADEAKKKAEEAK 1483
Score = 30.5 bits (68), Expect = 0.34
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKE-EKLRVIRAQ 113
++ EE + +KK ++ K AEE K+A E K ++ E+KK+ E+ + +
Sbjct: 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
Query: 114 KKAIKDAKLAEEKK 127
KK I K EEKK
Sbjct: 1756 KKKIAHLKKEEEKK 1769
Score = 30.5 bits (68), Expect = 0.35
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 50 RQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKG--------QSIWALMEE 101
R++ KK E ++ KK ++AK AEE++ E F++ Q+ E
Sbjct: 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277
Query: 102 KKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSR 134
+K ++L+ +KKA +AK AEEKK+A+E +
Sbjct: 1278 RKADELKKAEEKKKA-DEAKKAEEKKKADEAKK 1309
Score = 30.5 bits (68), Expect = 0.40
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKE-EKLRVIRAQ 113
+ +EEK +V + +KK ++ K AEE K+A E K + E+KK+ E+ +
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Query: 114 KKAIKDA--KLAEEKKRANEVSR 134
+K +A K AEE K+A E+ +
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKK 1709
Score = 30.5 bits (68), Expect = 0.42
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 56 KKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQKK 115
K E+ + KK ++AK AEE ++ L K+ + E KK E+L+ KK
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE------EAKKAEELK-----KK 1710
Query: 116 AIKDAKLAEEKKRANEVSRISLKK 139
++ K AEE K+A E ++I ++
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAEE 1734
Score = 30.5 bits (68), Expect = 0.43
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 49 SRQSSLEKKEEKLRVIRAQKKA-----IKDAKLAEEKKRANEGLLFKKGQSIWALMEEKK 103
++++ K EE + A+KKA ++A+ AE+ ++A E +K + + +K
Sbjct: 1103 AKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEA---RKAEDAKRVEIARK 1159
Query: 104 EEKLRVIRAQKKAIKDAKLAEEKKRANEVSR 134
E R +KA +DAK AE ++A EV +
Sbjct: 1160 AEDARKAEEARKA-EDAKKAEAARKAEEVRK 1189
Score = 30.1 bits (67), Expect = 0.48
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGL-----LFKKGQSIWALMEEKK--EEKL 107
+K EEK + A+KKA +D K A+E K+A KK + E KK EE
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 108 RVIRAQKKAIKDAKLAEEKKRANEVSR 134
+ A+KKA ++AK AEE K+ E ++
Sbjct: 1445 KADEAKKKA-EEAKKAEEAKKKAEEAK 1470
Score = 29.3 bits (65), Expect = 0.85
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 48 VSRQSSLEKKEEKLRVIRAQK----KAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKK 103
+ K E+ RV A+K + ++A+ AE+ K+A +K + + E +K
Sbjct: 1139 ARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAA---RKAEEVRKAEELRK 1195
Query: 104 EEKLRVIRAQKKA-----IKDAKLAEEKKRANEVSRI 135
E R A +KA ++A+ AE+ K+A V +
Sbjct: 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKA 1232
Score = 29.3 bits (65), Expect = 0.91
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEE-KKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQ 113
+K EE + A+KKA + K A+ KK+A E KK E ++ A+
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAE--AAE 1363
Query: 114 KKAIKDA-KLAEEKKRANEVSR 134
+KA K E KK+A+ +
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKK 1385
Score = 29.3 bits (65), Expect = 0.93
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 49 SRQSSLEKKEEKLRVIRAQKKAIK-----DAKLAEEKKRANEGLLFKKGQSIWALMEEKK 103
+R++ +K E + A +KA + + + AE+ ++A +K + E +K
Sbjct: 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAA---RKAEEERKAEEARK 1219
Query: 104 EEKLRVIRAQKKAIKDAKLAEEKKRANEV 132
E + A KKA + K AEE K+A E
Sbjct: 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
Score = 29.3 bits (65), Expect = 0.93
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
+K EEK + A+KKA + K E KK+A E KK + ++K EE + A+K
Sbjct: 1425 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEA---KKAEE----AKKKAEEAKKADEAKK 1477
Query: 115 KAIKDAKLAEE-KKRANEVSR 134
KA ++AK A+E KK+A E +
Sbjct: 1478 KA-EEAKKADEAKKKAEEAKK 1497
Score = 28.6 bits (63), Expect = 1.9
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEE--KKEEKLRVIRA 112
+K EE + A+KKA + K E KK+A E KK EE KK ++ +
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA---KKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 113 QKKAIKDAKLAEEK------KRANE 131
KK +AK AEE K+A E
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEE 1532
Score = 28.2 bits (62), Expect = 2.0
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQ- 113
+K EE + +KKA + K E+ + E L K+ + E KK E+ I+A+
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Query: 114 --KKAIKDAKLAEEKKRANE 131
K+A +D K AEE K+ E
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEE 1754
Score = 27.8 bits (61), Expect = 2.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
E + A++KA K EE K+ + ++K EEK + A+K
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA------------KKKAEEKKKADEAKK 1398
Query: 115 KAIKDAKLAEEKKRANE 131
KA +D K A+E K+A
Sbjct: 1399 KAEEDKKKADELKKAAA 1415
Score = 27.4 bits (60), Expect = 4.4
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 66 AQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQKKAIKDAKLAEE 125
A++ D E +A E KK ++ A K EE A+KKA +DA+ AEE
Sbjct: 1083 AKEDNRADEATEEAFGKAEEA---KKTETGKAEEARKAEE------AKKKA-EDARKAEE 1132
Query: 126 KKRANEVSRI 135
++A + +
Sbjct: 1133 ARKAEDARKA 1142
Score = 27.0 bits (59), Expect = 4.6
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 77 AEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQKKAIKDAKLAEE-KKRANEVSR 134
AEE ++A+E KK + E KK E+ + KK ++AK A+E KK+A E +
Sbjct: 1274 AEEARKADE---LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
Score = 27.0 bits (59), Expect = 6.0
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 50 RQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRV 109
R++ KK E+ R+ K ++ K+ E+ + E K + +++ +EEK +V
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-----LKKAEEEKKKV 1635
Query: 110 IRAQKKAIKDAKLAEEKKRANEVSRI 135
+ +KK ++ K AEE K+A E ++I
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKI 1661
Score = 26.6 bits (58), Expect = 8.0
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 50 RQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRV 109
+++ +KK ++L+ KKA ++ K AEE K+A E K ++ E KK E+ R+
Sbjct: 1540 KKAEEKKKADELKKAEELKKA-EEKKKAEEAKKAEE----DKNMALRKAEEAKKAEEARI 1594
Query: 110 IRAQKKAIKDAKLAEEKKRANEVSRI 135
K ++ K+ E+ + E ++I
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKI 1620
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 32.7 bits (74), Expect = 0.065
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 50 RQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRV 109
R+S + K + KK I K ++ A + ++ + E K K
Sbjct: 206 RESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPAD 265
Query: 110 IRAQKKAIKDAKLAEEKKRANEVSRISLKKN 140
+ K +D ++AE +KR E ++I +KKN
Sbjct: 266 TSSPK---EDKQVAENQKREIEKAQIEIKKN 293
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 31.4 bits (72), Expect = 0.12
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
I+ E +KE+K + + +KKAIK+ K E+
Sbjct: 91 IYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 27.5 bits (62), Expect = 2.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKK 81
+KE+K + + +KKAIK+ K E+
Sbjct: 97 AEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.7 bits (72), Expect = 0.12
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
EK E K R KK I +K+RA E + ++ + A + + ++A+K
Sbjct: 339 EKNEAKAR-----KKEIA------QKRRAAEREINREARQERAAAMARARARRAAVKAKK 387
Query: 115 KAIKDAKLAEEKKRANEVS 133
K + DA E+ NE S
Sbjct: 388 KGLIDASPNEDTPSENEES 406
Score = 30.2 bits (68), Expect = 0.38
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 37 WTMLSAGILYGVSRQSSLEKK---EEKLRVIRAQKKAIKDAKLAEEK-----KRANEGLL 88
WT++ I+Y + LE+K ++ + A+++A K E+K R N +
Sbjct: 261 WTLIQNIIMYLI-----LERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRM 315
Query: 89 FKKGQSIWALMEEKKEEKLRVIRAQKKAIKDAKLAE-EKKRANE 131
L E E K + A+K K K +K+RA E
Sbjct: 316 IITPWRAPELHAENAEIK-KTRTAEKNEAKARKKEIAQKRRAAE 358
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 30.3 bits (69), Expect = 0.26
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
I+ EE+KE+K + + +KKAIK+ K E+
Sbjct: 90 IYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 27.2 bits (61), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEEKK 81
E+KE+K + + +KKAIK+ K E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.8 bits (65), Expect = 0.85
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
++A + +KEEK + + +KKAIK K E++
Sbjct: 90 MFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 28.7 bits (64), Expect = 1.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 56 KKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQKK 115
++E++ R RA+ K ++ K EE + E A+ ++ +L I AQ K
Sbjct: 13 EREQRERKQRAKLKLERERKAKEEAAKQRE-----------AIEAAQRSRRLDAIEAQIK 61
Query: 116 AIKDAKLAE 124
A D ++ E
Sbjct: 62 A--DQQMQE 68
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEE 79
L +KEE LRV + A D KLA+E
Sbjct: 242 LLEKEEALRV-EELQNAEFDRKLAQE 266
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 28.3 bits (63), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEEKK 81
L +KE+K + +KKA+K+ K E +
Sbjct: 92 LREKEKKKSRTKEEKKALKEEKDKEAEP 119
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
I+ +KE+K + +KKA+K+ K E +
Sbjct: 87 IYEWHLREKEKKKSRTKEEKKALKEEKDKEAEP 119
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit [DNA replication,
recombination, and repair].
Length = 635
Score = 28.2 bits (64), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 99 MEEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKK 139
+EE +E +++ +KAI AK E ++A E++R
Sbjct: 362 LEENPQEAKKIV---EKAIAAAKAREAARKARELTRRKSAL 399
>gnl|CDD|223879 COG0809, QueA,
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
(queuine synthetase) [Translation, ribosomal structure
and biogenesis].
Length = 348
Score = 27.5 bits (62), Expect = 3.0
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 76 LAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIR 111
L + KR G G + A + E+ E LR++
Sbjct: 95 LIKPSKRLKAGDEIYFGDGLKATVLERLEHGLRLLE 130
>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional.
Length = 419
Score = 27.5 bits (61), Expect = 3.0
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 68 KKAIKDAKLAEEKKR---------ANEGLLFKKGQSIWALMEEKKEEKLR-VIRAQKKAI 117
K A DA A E ++ NE GQ+ ++EE + K + ++ AQ +
Sbjct: 248 KAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQA-QRILEEARAYKAQTILEAQGEVA 306
Query: 118 KDAKLAEEKKRANEVSR 134
+ AKL E K A E++R
Sbjct: 307 RFAKLLPEYKAAPEITR 323
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 27.6 bits (62), Expect = 3.0
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 27/96 (28%)
Query: 58 EEKLR----VIRAQKKAIK---------DAKLAEEKKRANEGLLFKKGQSIWALMEEKKE 104
E++LR +A AI+ EE++ N + +
Sbjct: 364 EDRLRSHPFYFKAALGAIEIYLKLHDKPLLAEGEEEEGENGN------------LSPAER 411
Query: 105 EKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKN 140
+KLR + Q+KA K A+ E +K A + + K
Sbjct: 412 KKLR--KKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional.
Length = 550
Score = 27.3 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 101 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLK 138
+ + ++ K+A K A+LAEEK RA E + + K
Sbjct: 7 DAGAPAVEKKQSDKEARKAARLAEEKARAAEKAALVEK 44
Score = 26.9 bits (59), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANE 85
+ + ++ K+A K A+LAEEK RA E
Sbjct: 7 DAGAPAVEKKQSDKEARKAARLAEEKARAAE 37
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 27.4 bits (60), Expect = 4.4
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 38 TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWA 97
++LS+ I V RQ L++K +R A +K I+ + N+ K ++ +
Sbjct: 317 SLLSSDIDQVVKRQLVLQQKGSDVRSFLASRKRIRQGAETLAAEEENDDNSSKLDDTLES 376
Query: 98 LMEEKKEEKLRVIRAQKK 115
+ E R++R KK
Sbjct: 377 TLLESS----RLMRNLKK 390
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR.
This is a domain of seven transmembrane regions that
forms the C-terminus of some subclass 3
G-coupled-protein receptors. It is often associated with
a downstream cysteine-rich linker domain, NCD3G
pfam07562, which is the human sweet-taste receptor, and
the N-terminal domain, ANF_receptor pfam01094. The seven
TM regions assemble in such a way as to produce a
docking pocket into which such molecules as cyclamate
and lactisole have been found to bind and consequently
confer the taste of sweetness.
Length = 238
Score = 26.8 bits (60), Expect = 4.9
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 7 GFTISFSQMLLK-----KIFRHGECQHTHGQHFARWTMLSAGIL 45
GFT+ FS +L+K +IF+ + + +L L
Sbjct: 66 GFTLCFSCLLVKTNRIVRIFKKSSPGRPRLKSLPKGQLLIVLGL 109
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 26.4 bits (59), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 53 SLEKKEEKLRVIRAQ-KKAIKDAKLAEEKKRANEGLLFKK 91
LEK+ +L +K ++ + EEK+ A+E KK
Sbjct: 138 ELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKK 177
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 26.5 bits (59), Expect = 6.5
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 29 THGQHFARWTMLSAGILYGV---------SRQSSLEKKEEKLRVIRAQKKAIKDAKLAEE 79
T+G RW + L + + + +A ++ I + K +
Sbjct: 409 TNGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENK 468
Query: 80 KKRANEGL 87
K+ A E
Sbjct: 469 KRLAEEIA 476
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 26.2 bits (58), Expect = 7.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 97 ALMEEKKEEKLRVIRAQK---KAIKDAKLAE-------EKKRANEVSR 134
AL+E +EE+L +R Q+ + ++A+LAE E++R E R
Sbjct: 144 ALLEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKER 191
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 26.5 bits (59), Expect = 7.4
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 55 EKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVIRAQK 114
E +E + + +K +D KLAE ++ E AL EE + + R ++
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAE---------YDALKEEIDKLDAEIDRLEE 53
Query: 115 KAIKDAKLAEEKKRANE 131
+
Sbjct: 54 LLDELEAKPAASGEGGG 70
>gnl|CDD|215128 PLN02211, PLN02211, methyl indole-3-acetate methyltransferase.
Length = 273
Score = 26.0 bits (57), Expect = 7.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 116 AIKDAKLAEEKKRANEVSRISLKKNH 141
A++ A+ EE ++V R+ +K H
Sbjct: 196 ALRSARFEEETGDIDKVPRVYIKTLH 221
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 26.1 bits (58), Expect = 7.9
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 51 QSSLEKKEEKL--RVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLR 108
+ +L++K E+L ++ ++ + A EK+ E K + +K EEKLR
Sbjct: 191 ERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREK------EELRKKYEEKLR 244
Query: 109 VIRAQKKAIKDAKLAEE 125
++ + KL E
Sbjct: 245 QELERQAEAHEQKLKNE 261
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 26.2 bits (58), Expect = 8.6
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 53 SLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLL---FKKGQSIWALMEEKKEEKLRV 109
S+EK +EK++ ++ Q K +K L E + L F++ ++K+++ +
Sbjct: 278 SMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKK 337
Query: 110 IRAQKKAI-----KDAKLAEEKKRANEVSRISL 137
+KK I + KL + E ++L
Sbjct: 338 EEKKKKQIERLEERIEKLEVQATDKEENKTVAL 370
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component. Nup88 can be divided
into two structural domains; the N-terminal two-thirds
of the protein has no obvious structural motifs but is
the region for binding to Nup98, one of the components
of the nuclear pore. the C-terminal end is a predicted
coiled-coil domain. Nup88 is overexpressed in tumour
cells.
Length = 717
Score = 26.4 bits (58), Expect = 8.7
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 55 EKKEEKLRVIRAQKKAIKDA--KLAE--EKKRANEGLLFKKGQSIW--------ALMEEK 102
EK+ E ++ R ++K++ + KLAE E+ + N+ LL + + + L + +
Sbjct: 575 EKQLEDIQDCREERKSLSERAEKLAEKFEEAKYNQELLVNRCKRLLQSANSQLPVLSDSE 634
Query: 103 KEEKLRVIRAQKK------AIKDAKLAEEKKRANEVSRISLKKNHVAISPYEVK 150
++ + R K+ IK K + +R + S+ S KK+ + + K
Sbjct: 635 RDMSKELQRINKQLQHLANGIKQVKKKKNYQRYHMASQESPKKSSYTLPEKQHK 688
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.363
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,637,803
Number of extensions: 686827
Number of successful extensions: 1625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 278
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)