RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4037
(153 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 64/185 (34%)
Query: 8 FTISFSQM-LLKKIFR---------H--GECQHTHGQHFARWTMLS--AGILYGVSRQSS 53
+ + LK H GE + L+ A ++ S
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGE-----------YAALASLADVM-------S 1778
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLR----- 108
+E + V+ + ++ A +E R+N G++ + A ++ + +
Sbjct: 1779 IE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 109 ------------------VIRAQKKAIKDA-KLAEEKKRANEVSRISLKKNHVAISPYEV 149
V +A+ + K + +I + + ++S EV
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK----LQKIDIIELQKSLSLEEV 1891
Query: 150 K-LLF 153
+ LF
Sbjct: 1892 EGHLF 1896
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.008
Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 48 VSRQSSLEKKEEKLRVIRA-QKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEK 106
+++ L ++ E +R R Q+K +++ A + +K + +++ E+
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE---WREKAKKDLEEWNQRQSEQ 130
Query: 107 LRVIRAQKKAIKDAKLAEEKKRANE 131
+ K + ++A++
Sbjct: 131 VE------KNKINNRIADKAFYQQP 149
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 28.3 bits (63), Expect = 0.86
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
++ + +KE+K ++ +KK I+ + E+
Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 25.6 bits (56), Expect = 6.7
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 54 LEKKEEKLRVIRAQKKAIKDAKLAEEKK 81
+KE+K ++ +KK I+ + E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 1.5
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 51 QSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLRVI 110
++ +E++EE+ + ++A+KK ++ L E++ E +K Q + K ++ I
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 111 RAQKKAIKDAKLAEEKKRANE 131
+ KL +E+K E
Sbjct: 993 LIMEDQN--NKLTKERKLLEE 1011
Score = 26.0 bits (57), Expect = 6.1
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 49 SRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKLR 108
+ + EE + A+K+ +++ E + E + L EKK+ + +
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE------EERSQQLQAEKKKMQQQ 956
Query: 109 VIRAQKK----AIKDAKLAEEKKRANE 131
++ +++ KL EK A+
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADG 983
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.7 bits (61), Expect = 1.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
I+ ++E+KL + +KKAIK+ + AE +
Sbjct: 107 IYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.6 bits (60), Expect = 1.7
Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 48 VSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEEKL 107
+++ L ++ E +R R +++ A K E +K + +++ E++
Sbjct: 89 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE--WREKAKKDLEEWNQRQSEQV 146
Query: 108 RVIRAQKKAIKDAKLAEEKKRAN 130
+K + ++A++
Sbjct: 147 ------EKNKINNRIADKAFYQQ 163
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 26.7 bits (60), Expect = 3.1
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
RA+ L G SI AL ++ +++L
Sbjct: 29 ARADGVL----GYSIRALCQDDPDQRLS 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 4.2
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 12/38 (31%)
Query: 67 QKKAIKDAKLAEEKKRANEGLLFKKGQ----SIWALME 100
+K+A+K KL K L+ +I A ME
Sbjct: 18 EKQALK--KLQASLK------LYADDSAPALAIKATME 47
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 26.5 bits (59), Expect = 4.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
+A+ L G SI AL + ++L
Sbjct: 34 AQADAVL----GYSIRALCVDDPRDELG 57
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 26.4 bits (57), Expect = 4.5
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 46 YGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQSIWALMEEKKEE 105
Y + + + ++ K +R K A +EEK + KKG+ + +K ++
Sbjct: 331 YAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGK--KTVGVKKPKK 388
Query: 106 KLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKK 139
+ KKA K A +KK A + KK
Sbjct: 389 PV----VGKKAAATKKPAADKKPAEKKPTTEEKK 418
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 26.1 bits (58), Expect = 4.9
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 26 CQHTHGQHFAR---WTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAI 71
CQ+ QH + + A LY + ++KK + + + K I
Sbjct: 274 CQNDRSQHKNKDQAMKQMKAK-LY----EVEMQKKNAEKQAMEDNKSDI 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 5.7
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 46 YGVSRQSSLEKKEEKLRVIRAQKKAI--------KDAKLAEEKKRANEGLLFKKGQSIWA 97
Y VSR K + L +R K + K +A + + + + W
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWL 187
Query: 98 LMEEKKEEKLRVIRAQK--KAIKDAKLAEEKKRANEVSRI-SLK---KNHVAISPYEVKL 151
++ + + QK I + +N RI S++ + + PYE L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 152 L 152
L
Sbjct: 248 L 248
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 25.9 bits (58), Expect = 6.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
A+EG G +WAL + EE L
Sbjct: 36 AEASEGA----GVDLWALSQGGPEEMLN 59
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 25.9 bits (58), Expect = 6.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
A+ L G +WAL ++ E+L
Sbjct: 34 AEASAAL----GYDLWALTQQGPAEELN 57
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 25.6 bits (57), Expect = 6.8
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
++A+ L +WAL++ +E+L
Sbjct: 38 QQASSAL----AYDLWALVQHGPQERLD 61
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 25.9 bits (56), Expect = 6.9
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 95 IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKK 127
+ + + E + ++ + +K IK+ K+
Sbjct: 131 MSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 25.6 bits (57), Expect = 7.2
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
A + L I M +E KL
Sbjct: 42 TSAAKTL----DFDILETMFTDEEGKLG 65
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 25.6 bits (57), Expect = 7.9
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 81 KRANEGLLFKKGQSIWALMEEKKEEKLR 108
A++ L GQ I L+ + ++L
Sbjct: 40 DEASDAL----GQDIGKLIADGPADELN 63
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 25.4 bits (55), Expect = 8.4
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 83 ANEGLLFKKGQS----IWALMEEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRI 135
A+ LF G+ + + ++ R + + + L E +R R+
Sbjct: 2 ASYAELFDIGEDFAAFVGHGLATEQGAVARFRQKLESNGLPSALTERLQRIERRYRL 58
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY,
PFAM02637, DUF186, PSI, protein structure initiative;
1.40A {Bacillus subtilis} SCOP: a.182.1.1
Length = 148
Score = 24.9 bits (55), Expect = 9.0
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 99 MEEKKEEKLRVIRAQKKAIKDAKLAEEKKRANE 131
M+ ++++KL V+R K ++++ + +K E
Sbjct: 15 MKNREKDKLTVVRMVKASLQNEAIKLKKDSLTE 47
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 25.6 bits (57), Expect = 9.6
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 34 FARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEGLLFKKGQ 93
F R T+ A Y S + LR ++ + + A G
Sbjct: 344 FHRLTITQAIQKYAPSYTDGQLSDDAFLRSE-LKRLGVDVTQPAFLN--------AGIGA 394
Query: 94 SIWALMEEKKEEKL 107
AL EE E +L
Sbjct: 395 LQLALFEETAEAQL 408
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.363
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,238,842
Number of extensions: 124136
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 82
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)