BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4038
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 5/333 (1%)
Query: 15 WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
WD+ Y + + K + YF + EGL +++ ++ G++ + V + +W+
Sbjct: 336 WDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVP--DAHVWNK 393
Query: 75 DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
V V + G +LG Y D + R+ K N F ++ G L +GS + L++N
Sbjct: 394 SVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNF 453
Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
P P LL V FHE GH MH + A+TD+ +GT TDF EVPS ++E +
Sbjct: 454 SQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWV 513
Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
D ++ +KHY G P+ +E+L+ S+ + Q+ S +D H++ +
Sbjct: 514 WDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATLDA 573
Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASW-IWQSYFEKDPF 312
+ + G+ T F HL G Y L V S ++ S F+K+
Sbjct: 574 ASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGI 633
Query: 313 -SRDSGDAYRLNCLSHGGGKPASKLVSDFLQKD 344
+ + G YR L GG ++ +FLQ++
Sbjct: 634 MNPEVGMKYRNLILKPGGSLDGMDMLQNFLQRE 666
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 145/333 (43%), Gaps = 5/333 (1%)
Query: 15 WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
WD+ Y N+ + + + YF + GL ++ ++ G+ H E + W
Sbjct: 320 WDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASA--WHE 377
Query: 75 DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
DV G ++G Y D + R+ K F ++ G +GS Q I ++ N
Sbjct: 378 DVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANF 437
Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
P +P LL V FHE GH MH + ++ ++ +GT TDF E PS ++E +
Sbjct: 438 TKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSGTHVETDFVEAPSQMLENWV 497
Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
+ + ++HY G +P E+L+ S++ Q+ + +D H+ +
Sbjct: 498 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 557
Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP- 311
++ G+P T F HL GY A+YY YL S + ++ + F+++
Sbjct: 558 AEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGV 617
Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKD 344
+ G YR L GG + AS ++ FL +D
Sbjct: 618 LNSKVGMDYRSCILRPGGSEDASAMLRRFLGRD 650
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 5/333 (1%)
Query: 15 WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
WD+ Y + + K + YF + EGL +++ ++ G++ + V + +W+
Sbjct: 336 WDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVP--DAHVWNK 393
Query: 75 DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
V V + G +LG Y D + R+ K N F ++ G L +GS + L++N
Sbjct: 394 SVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNF 453
Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
P P LL V+ FHE GH MH + A+TD+ +GT DF EVPS ++E +
Sbjct: 454 SQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDFARFSGTNVERDFVEVPSQMLENWV 513
Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
D ++ +KHY G P+ +E+L+ S+ + Q+ S +D H++ +
Sbjct: 514 WDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATLDA 573
Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASW-IWQSYFEKDPF 312
+ + G+ T F HL G Y L V S ++ S F+K+
Sbjct: 574 ASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGI 633
Query: 313 -SRDSGDAYRLNCLSHGGGKPASKLVSDFLQKD 344
+ + G YR L GG ++ +FLQ++
Sbjct: 634 MNPEVGMKYRNLILKPGGSLDGMDMLQNFLQRE 666
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 145/333 (43%), Gaps = 5/333 (1%)
Query: 15 WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
WD+ Y N+ + + + YF + GL ++ ++ G+ H E + W
Sbjct: 320 WDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASA--WHE 377
Query: 75 DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
DV G ++G Y D + R+ K F ++ G +GS Q I ++ N
Sbjct: 378 DVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANF 437
Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
P +P LL V+ FHE GH MH + ++ ++ +GT DF E PS ++E +
Sbjct: 438 TKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWV 497
Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
+ + ++HY G +P E+L+ S++ Q+ + +D H+ +
Sbjct: 498 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 557
Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP- 311
++ G+P T F HL GY A+YY YL S + ++ + F+++
Sbjct: 558 AEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGV 617
Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKD 344
+ G YR L GG + AS ++ FL +D
Sbjct: 618 LNSKVGMDYRSCILRPGGSEDASAMLRRFLGRD 650
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 151/336 (44%), Gaps = 25/336 (7%)
Query: 15 WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCM-EGLNNLFNKIYGITLQHVEANNGELWS 73
WD A+ + + +R+K L PYF L T + EG+ N+++GI VE + ++
Sbjct: 334 WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKF--VERFDIPVYH 391
Query: 74 SDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQN------PIV 127
DV + L Y DFF R K GG + N Q+ P++
Sbjct: 392 PDVRVWEIFDHNGVGLALFYGDFFARDSKS---------GGAWMGNFVEQSTLNKTHPVI 442
Query: 128 VLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSV 187
+ N P P LL V LFHE GH +H + AR Y ++GT DF E PS
Sbjct: 443 YNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQ 502
Query: 188 LMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHS 247
+ E +A+ P+V +A+HY G MP+E+ Q + + EM + + LD+ +H
Sbjct: 503 INEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHC 562
Query: 248 SEVTNTFQ-----QLKECQNTYYGIPYIEHTAWQHRFSHL--VGYGAKYYSYLLSRAVAS 300
E Q +L+ +P I F+H+ GY A YY+YL ++ +A
Sbjct: 563 LEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLAD 622
Query: 301 WIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKL 336
+Q + E+ +R++G +R LS G + +L
Sbjct: 623 DGYQWFVEQGGLTRENGLRFREAILSRGNSEDLERL 658
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 118 SNGSYQ-NPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTR 176
S+GSY NP ++L W T + L HE GH++HS R++ +V G
Sbjct: 343 SSGSYDTNPYILL-------NWHD----TLDQLFTLVHEXGHSVHSYFTRSNQPYVYGD- 390
Query: 177 CATDFAEVPS-----VLMEFF---ASDPRVIKSFAKHYIGG 209
+ AE+ S +L E+ DPRV HY+ G
Sbjct: 391 YSIFLAEIASTTNENILTEYLLETEKDPRVRAYVLNHYLDG 431
>pdb|3RU8|X Chain X, Structure Of An Hiv Epitope Scaffold In Complex With
Neutralizing Antibody B12 Fab
Length = 282
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 206 YIGGQP-MPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTY 264
Y GG P + +E L++ + K +A QA++++ A +HS Q + N+
Sbjct: 110 YSGGDPEIVQEWLRTVAYAGKALKAGSSQARIYFDAGHSAWHSPAQMAAALQRADISNSA 169
Query: 265 YGI 267
+GI
Sbjct: 170 HGI 172
>pdb|2BOE|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca
pdb|2BOF|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Cellotetrose
pdb|2BOG|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Methyl
Cellobiosyl- 4-Thio-Beta-Cellobioside
Length = 286
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 214 EEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGI 267
+E+L++ + K +A QA++++ A +HS ++ Q + N+ +GI
Sbjct: 131 QEVLETMAYAGKALKAGSSQARIYFDAGHSAWHSPAQMASWLQQADISNSAHGI 184
>pdb|2BOD|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a From
Thermobifida Fusca In Complex With Methyl Cellobiosyl-4-
Thio-Beta-Cellobioside
pdb|1TML|A Chain A, Crystal Structure Of The Catalytic Domain Of A
Thermophilic Endocellulase
Length = 286
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 214 EEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGI 267
+E+L++ + K +A QA++++ A +HS ++ Q + N+ +GI
Sbjct: 131 QEVLETMAYAGKALKAGSSQARIYFDAGHSAWHSPAQMASWLQQADISNSAHGI 184
>pdb|3AHM|A Chain A, Pz Peptidase A
pdb|3AHM|B Chain B, Pz Peptidase A
pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
Length = 564
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 74/203 (36%), Gaps = 28/203 (13%)
Query: 145 TPAMVDNLFHEMGHAMHSMLAR----TDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIK 200
T +D L HE GHA +R +Y T C E+ S+ MEFF +K
Sbjct: 347 TSGDIDVLTHEAGHAFQVYESRHYEIPEYNWPTLEAC-----EIHSMSMEFFTWP--WMK 399
Query: 201 SFAKHYIGGQPMPEEMLQSFCLSKKLF------QASEMQAQVFYSALDLEYHSSEVTNTF 254
F K E Q + LS L E Q V+ + +
Sbjct: 400 LFFKE-------DAEKYQFYHLSDALLFLPYGVAVDEFQHFVYENPNATPAERKQAWRAI 452
Query: 255 QQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSR 314
++ Y G Y+E + R SH+ Y Y L++ A W+ E +
Sbjct: 453 ERKYMPTKDYDGNDYLERGGFWQRQSHIYTTAFYYIDYTLAQICAFQFWKRSREN---YK 509
Query: 315 DSGDAYRLNCLSHGGGKPASKLV 337
++ + Y L GG KP ++LV
Sbjct: 510 EAWNDY-LTLCRQGGSKPFTELV 531
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 21 SNKAKRDKLKLTGIDFAPYFS--LGTCMEGLNNLFNKI--YGITLQHVEANNGELWSSDV 76
+NK D+ + +PY S LG C+ L ++ YG L HV N G L S D+
Sbjct: 62 ANKEILDEAYVMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDL 121
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 158 HAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEML 217
H ++ L R+ V + AT + + E+ SDP I F G P P ++
Sbjct: 48 HEDYNFLTRSQRYEVAVKKSATMVKK----MREYGISDPEEIMWFKNSVHRGHPEPLDLH 103
Query: 218 QSFCLSKKLFQAS-EMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTY 264
L L QA+ E Q + F A +L E+T T+ Q + T+
Sbjct: 104 LGMFLPTLLHQATAEQQERFFMPAWNL-----EITGTYAQTEMGHGTH 146
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 141 PCLLTPAMVDNLFHEMGHAMHSMLARTDYQH 171
P +L +N H GH +H L +TDY +
Sbjct: 93 PVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 49 LNNLFNKIYGITLQHVEANNGE-LWSSDVYKLAVTHEKEGLLGYI 92
L F KI IT++ V+A G+ LW D+ +A T + EGLL Y+
Sbjct: 377 LGEAFKKIDAITVKDVKAWAGKRLWDQDI-AIAGTGQIEGLLDYM 420
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 49 LNNLFNKIYGITLQHVEANNGE-LWSSDVYKLAVTHEKEGLLGYI 92
L F KI IT++ V+A G+ LW D+ +A T + EGLL Y+
Sbjct: 376 LGEAFKKIDAITVKDVKAWAGKRLWDQDI-AIAGTGQIEGLLDYM 419
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 141 PCLLTPAMVDNLFHEMGHAMHSMLARTDYQH 171
P +L +N H GH +H L +TDY +
Sbjct: 93 PVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 141 PCLLTPAMVDNLFHEMGHAMHSMLARTDYQH 171
P +L +N H GH +H L +TDY +
Sbjct: 93 PVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 175 TRCATDFAEVPSVL----MEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKK 225
R A DF ++P +E+F DPR FAK GQ P + LS K
Sbjct: 44 ARLAVDFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,682,669
Number of Sequences: 62578
Number of extensions: 498802
Number of successful extensions: 966
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 22
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)