Query psy4038
Match_columns 371
No_of_seqs 158 out of 1577
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:46:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0339 Dcp Zn-dependent oligo 100.0 3E-102 7E-107 783.3 34.1 350 2-353 322-678 (683)
2 PRK10280 dipeptidyl carboxypep 100.0 1.7E-97 4E-102 776.3 36.5 348 2-354 322-677 (681)
3 cd06457 M3A_MIP Peptidase M3 m 100.0 6.2E-95 1.4E-99 732.2 34.7 344 9-352 99-456 (458)
4 PRK10911 oligopeptidase A; Pro 100.0 8.2E-93 1.8E-97 743.3 36.9 351 2-354 319-676 (680)
5 KOG2090|consensus 100.0 4.7E-92 1E-96 692.1 31.2 354 3-356 332-691 (704)
6 cd06456 M3A_DCP_Oligopeptidase 100.0 4.3E-91 9.3E-96 695.9 36.8 349 2-354 66-420 (422)
7 KOG2089|consensus 100.0 3.4E-92 7.3E-97 701.1 27.0 352 2-355 348-707 (718)
8 cd06455 M3A_TOP Peptidase M3 T 100.0 1.3E-85 2.7E-90 667.4 37.1 350 3-354 117-472 (472)
9 PF01432 Peptidase_M3: Peptida 100.0 1.3E-82 2.9E-87 644.4 25.1 350 3-354 96-456 (458)
10 cd06258 Peptidase_M3_like The 100.0 7.3E-59 1.6E-63 458.0 31.0 290 7-353 69-364 (365)
11 cd06459 M3B_Oligoendopeptidase 100.0 7.3E-43 1.6E-47 350.5 16.9 285 5-358 130-426 (427)
12 TIGR02289 M3_not_pepF oligoend 100.0 6.2E-42 1.3E-46 353.8 19.2 276 3-346 242-528 (549)
13 TIGR02290 M3_fam_3 oligoendope 100.0 2.4E-41 5.1E-46 352.3 18.7 286 4-359 282-578 (587)
14 TIGR00181 pepF oligoendopeptid 100.0 1.3E-40 2.7E-45 347.4 18.7 284 4-359 286-582 (591)
15 COG1164 Oligoendopeptidase F [ 100.0 2.4E-33 5.1E-38 290.4 19.3 289 4-359 286-586 (598)
16 cd06460 M32_Taq Peptidase fami 99.9 3.1E-21 6.8E-26 189.9 25.9 222 127-356 145-393 (396)
17 cd06461 M2_ACE Peptidase famil 99.7 1.6E-16 3.5E-21 160.6 20.6 230 97-360 212-475 (477)
18 PF02074 Peptidase_M32: Carbox 99.4 7.8E-11 1.7E-15 119.5 22.6 223 127-356 245-492 (494)
19 COG2317 Zn-dependent carboxype 99.1 5.4E-09 1.2E-13 103.0 17.9 241 98-356 227-493 (497)
20 PF01401 Peptidase_M2: Angiote 98.7 1.1E-06 2.3E-11 91.7 18.8 224 123-355 324-569 (595)
21 KOG3690|consensus 98.1 0.00028 6.2E-09 71.9 19.1 206 141-356 364-599 (646)
22 cd04277 ZnMc_serralysin_like Z 95.0 0.15 3.3E-06 45.3 8.9 33 44-80 37-69 (186)
23 COG2856 Predicted Zn peptidase 92.9 0.092 2E-06 48.0 3.2 32 123-164 57-88 (213)
24 cd04278 ZnMc_MMP Zinc-dependen 92.7 0.89 1.9E-05 39.2 9.1 22 44-65 25-46 (157)
25 cd00203 ZnMc Zinc-dependent me 90.5 1.7 3.6E-05 37.5 8.4 25 42-66 23-47 (167)
26 smart00235 ZnMc Zinc-dependent 90.1 1.1 2.5E-05 37.6 6.8 23 43-65 25-47 (140)
27 PF06114 DUF955: Domain of unk 88.9 0.44 9.4E-06 38.2 3.3 33 124-166 28-60 (122)
28 PF00413 Peptidase_M10: Matrix 86.7 0.34 7.3E-06 41.3 1.4 24 43-66 24-47 (154)
29 PF14247 DUF4344: Domain of un 86.4 0.45 9.7E-06 43.8 2.1 18 148-165 92-109 (220)
30 PF13583 Reprolysin_4: Metallo 84.3 0.95 2.1E-05 41.2 3.2 24 42-65 31-54 (206)
31 PRK13267 archaemetzincin-like 84.0 2.2 4.8E-05 38.0 5.3 64 44-111 15-92 (179)
32 cd04268 ZnMc_MMP_like Zinc-dep 82.4 0.72 1.6E-05 39.8 1.6 35 43-81 17-51 (165)
33 cd04279 ZnMc_MMP_like_1 Zinc-d 82.2 0.71 1.5E-05 39.7 1.4 15 147-161 103-117 (156)
34 cd04270 ZnMc_TACE_like Zinc-de 82.1 4 8.8E-05 38.1 6.6 13 149-161 168-180 (244)
35 PF13058 DUF3920: Protein of u 79.7 1.2 2.7E-05 35.9 1.9 14 148-161 76-89 (126)
36 PF13398 Peptidase_M50B: Pepti 79.1 1.6 3.4E-05 39.6 2.6 24 146-169 20-43 (200)
37 PF13688 Reprolysin_5: Metallo 78.9 0.99 2.1E-05 40.2 1.3 17 145-161 139-155 (196)
38 PF13582 Reprolysin_3: Metallo 77.9 1.1 2.5E-05 36.6 1.2 13 148-160 107-119 (124)
39 PF13574 Reprolysin_2: Metallo 77.1 1.5 3.2E-05 38.7 1.8 14 148-161 111-124 (173)
40 PF10460 Peptidase_M30: Peptid 76.7 2 4.3E-05 42.5 2.7 47 148-196 139-185 (366)
41 PF14891 Peptidase_M91: Effect 76.4 1.7 3.7E-05 38.4 2.0 22 146-167 101-122 (174)
42 cd04327 ZnMc_MMP_like_3 Zinc-d 75.3 1.5 3.2E-05 39.6 1.3 16 148-163 92-107 (198)
43 cd04275 ZnMc_pappalysin_like Z 73.2 3.7 8.1E-05 37.9 3.5 17 145-161 134-150 (225)
44 PF13485 Peptidase_MA_2: Pepti 70.4 4.3 9.3E-05 32.6 2.9 35 150-190 27-61 (128)
45 PF04228 Zn_peptidase: Putativ 70.2 2.9 6.2E-05 40.2 2.1 21 145-165 167-187 (292)
46 PF05572 Peptidase_M43: Pregna 69.9 2.5 5.3E-05 36.7 1.4 17 145-161 66-82 (154)
47 cd04272 ZnMc_salivary_gland_MP 67.3 3.2 6.8E-05 38.0 1.6 16 145-160 142-157 (220)
48 cd04271 ZnMc_ADAM_fungal Zinc- 65.9 1.9 4.1E-05 39.9 -0.1 14 147-160 144-157 (228)
49 cd04280 ZnMc_astacin_like Zinc 65.6 3 6.5E-05 37.0 1.1 14 149-162 75-88 (180)
50 PF04298 Zn_peptidase_2: Putat 64.1 6.1 0.00013 36.3 2.8 20 145-164 86-105 (222)
51 PF01400 Astacin: Astacin (Pep 63.1 4.4 9.6E-05 36.3 1.7 15 148-162 79-93 (191)
52 PF02031 Peptidase_M7: Strepto 62.5 5 0.00011 33.6 1.7 17 145-161 74-90 (132)
53 cd04267 ZnMc_ADAM_like Zinc-de 61.9 3.4 7.3E-05 36.7 0.8 16 145-160 130-145 (192)
54 PF12388 Peptidase_M57: Dual-a 61.6 4 8.7E-05 37.2 1.2 19 150-170 135-153 (211)
55 cd04283 ZnMc_hatching_enzyme Z 61.4 4.3 9.3E-05 36.2 1.3 16 149-164 78-93 (182)
56 cd04269 ZnMc_adamalysin_II_lik 59.0 5.1 0.00011 35.7 1.4 15 146-160 129-143 (194)
57 PF02163 Peptidase_M50: Peptid 57.7 6.4 0.00014 34.9 1.8 24 149-172 8-31 (192)
58 KOG3658|consensus 57.5 12 0.00027 39.6 3.9 22 85-107 338-359 (764)
59 cd04281 ZnMc_BMP1_TLD Zinc-dep 55.9 5.9 0.00013 35.9 1.3 16 149-164 88-103 (200)
60 TIGR03296 M6dom_TIGR03296 M6 f 54.8 2.7 5.9E-05 40.2 -1.2 14 148-161 165-178 (286)
61 PF13699 DUF4157: Domain of un 54.2 11 0.00023 28.9 2.2 18 145-162 58-75 (79)
62 cd06163 S2P-M50_PDZ_RseP-like 53.2 8.3 0.00018 34.4 1.7 20 149-168 10-29 (182)
63 PF09471 Peptidase_M64: IgA Pe 53.1 7.1 0.00015 37.0 1.4 18 148-165 216-233 (264)
64 cd05709 S2P-M50 Site-2 proteas 52.9 8.4 0.00018 33.8 1.7 19 149-167 9-27 (180)
65 cd04276 ZnMc_MMP_like_2 Zinc-d 51.6 8.1 0.00018 34.9 1.4 12 150-161 118-129 (197)
66 PF14559 TPR_19: Tetratricopep 50.4 41 0.00089 23.6 4.9 49 299-347 10-58 (68)
67 cd06161 S2P-M50_SpoIVFB SpoIVF 50.0 9.8 0.00021 34.5 1.7 19 149-167 39-57 (208)
68 cd04282 ZnMc_meprin Zinc-depen 47.3 9.5 0.00021 35.3 1.2 17 149-165 121-137 (230)
69 PF01435 Peptidase_M48: Peptid 46.8 14 0.0003 33.3 2.2 24 144-167 84-108 (226)
70 PF07607 DUF1570: Protein of u 45.0 15 0.00033 30.8 2.0 43 148-194 1-43 (128)
71 cd06159 S2P-M50_PDZ_Arch Uncha 42.3 15 0.00033 34.7 1.7 17 149-165 119-135 (263)
72 PF01421 Reprolysin: Reprolysi 41.9 15 0.00032 32.8 1.6 16 145-160 128-143 (199)
73 cd06164 S2P-M50_SpoIVFB_CBS Sp 40.6 17 0.00036 33.6 1.7 17 149-165 54-70 (227)
74 PF05960 DUF885: Bacterial pro 39.5 2.3E+02 0.005 29.4 10.2 169 145-340 369-544 (549)
75 PF03195 DUF260: Protein of un 39.0 27 0.00059 28.0 2.5 26 33-60 15-40 (101)
76 cd04273 ZnMc_ADAMTS_like Zinc- 38.9 6.5 0.00014 35.5 -1.3 16 146-161 138-153 (207)
77 cd08819 CARD_MDA5_2 Caspase ac 38.2 1.5E+02 0.0033 23.1 6.4 62 294-357 16-79 (88)
78 PF10462 Peptidase_M66: Peptid 37.9 15 0.00032 35.5 1.0 19 143-161 188-206 (305)
79 KOG3607|consensus 37.6 1E+02 0.0023 33.5 7.3 17 145-161 320-336 (716)
80 PF13432 TPR_16: Tetratricopep 37.4 35 0.00077 23.9 2.7 49 299-347 16-64 (65)
81 cd06162 S2P-M50_PDZ_SREBP Ster 37.3 20 0.00044 34.2 1.7 17 149-165 136-152 (277)
82 PF05548 Peptidase_M11: Gameto 37.2 16 0.00035 35.5 1.1 15 147-161 149-163 (314)
83 PTZ00337 surface protease GP63 36.2 41 0.00088 35.5 3.9 33 123-160 209-241 (567)
84 PF02128 Peptidase_M36: Fungal 35.8 13 0.00028 36.9 0.2 45 119-166 159-203 (378)
85 COG0501 HtpX Zn-dependent prot 34.7 20 0.00044 33.9 1.3 21 144-164 152-173 (302)
86 COG2738 Predicted Zn-dependent 33.4 28 0.00061 31.4 1.9 20 145-164 89-108 (226)
87 PRK03982 heat shock protein Ht 33.2 21 0.00046 34.0 1.2 21 145-165 121-142 (288)
88 cd06160 S2P-M50_like_2 Unchara 32.9 27 0.00058 31.1 1.7 18 150-167 43-60 (183)
89 PF01447 Peptidase_M4: Thermol 32.1 29 0.00064 29.9 1.8 13 149-161 136-148 (150)
90 TIGR00054 RIP metalloprotease 31.4 27 0.00058 35.3 1.6 20 148-167 14-33 (420)
91 PF07998 Peptidase_M54: Peptid 31.3 28 0.00061 31.4 1.6 21 141-161 138-158 (194)
92 PF01457 Peptidase_M8: Leishma 31.1 36 0.00079 35.4 2.6 36 123-161 188-223 (521)
93 KOG3714|consensus 30.9 23 0.0005 35.7 1.1 20 149-168 160-179 (411)
94 PRK03001 M48 family peptidase; 30.3 25 0.00054 33.5 1.2 22 144-165 119-141 (283)
95 PRK02870 heat shock protein Ht 29.7 27 0.00058 34.3 1.3 21 144-164 168-189 (336)
96 cd08810 CARD_BCL10 Caspase act 29.6 2.4E+02 0.0053 21.8 6.3 65 290-358 9-74 (84)
97 KOG2661|consensus 28.7 74 0.0016 31.2 4.0 48 149-196 276-329 (424)
98 PRK04897 heat shock protein Ht 28.1 27 0.00059 33.5 1.0 20 145-164 133-153 (298)
99 PF01742 Peptidase_M27: Clostr 27.8 42 0.00092 33.4 2.2 22 145-166 211-232 (408)
100 PRK01345 heat shock protein Ht 27.5 32 0.00069 33.5 1.3 21 145-165 120-141 (317)
101 PRK10779 zinc metallopeptidase 27.3 35 0.00076 34.8 1.7 19 149-167 16-34 (449)
102 KOG2921|consensus 26.8 43 0.00092 33.5 2.0 31 138-168 121-151 (484)
103 COG5549 Predicted Zn-dependent 26.8 32 0.0007 31.3 1.1 21 141-161 180-200 (236)
104 PF05547 Peptidase_M6: Immune 26.7 11 0.00025 40.1 -2.0 13 148-160 221-233 (645)
105 PF13402 M60-like: Peptidase M 26.7 33 0.00071 32.7 1.3 15 149-163 220-234 (307)
106 COG4227 Antirestriction protei 25.7 31 0.00066 32.6 0.8 13 148-160 203-215 (316)
107 PRK03072 heat shock protein Ht 24.7 36 0.00079 32.5 1.2 22 144-165 122-144 (288)
108 PRK05457 heat shock protein Ht 24.7 35 0.00076 32.6 1.0 20 144-163 129-149 (284)
109 PF12315 DUF3633: Protein of u 24.2 69 0.0015 29.2 2.7 14 148-161 93-106 (212)
110 KOG2719|consensus 23.8 45 0.00097 33.7 1.6 19 149-167 281-299 (428)
111 PF11324 DUF3126: Protein of u 23.0 2.1E+02 0.0047 20.9 4.6 44 46-98 2-48 (63)
112 PF00427 PBS_linker_poly: Phyc 22.8 88 0.0019 26.4 3.0 32 316-347 56-88 (131)
113 PRK01265 heat shock protein Ht 22.3 44 0.00095 32.6 1.2 22 144-165 135-157 (324)
114 PRK02391 heat shock protein Ht 22.3 41 0.00089 32.3 1.0 20 145-164 129-149 (296)
115 PTZ00257 Glycoprotein GP63 (le 21.6 70 0.0015 34.0 2.6 35 124-161 235-269 (622)
116 PHA00657 crystallin beta/gamma 21.2 52 0.0011 37.7 1.6 26 140-165 783-808 (2052)
117 smart00759 Flu_M1_C Influenza 20.7 1.9E+02 0.0041 22.4 4.1 47 177-227 41-87 (95)
118 COG1913 Predicted Zn-dependent 20.5 53 0.0012 29.1 1.3 20 142-161 118-137 (181)
119 KOG1565|consensus 20.2 36 0.00077 35.1 0.1 16 147-162 210-225 (469)
120 PF06167 Peptidase_M90: Glucos 20.1 77 0.0017 29.8 2.3 19 148-166 154-172 (253)
No 1
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-102 Score=783.26 Aligned_cols=350 Identities=29% Similarity=0.555 Sum_probs=333.9
Q ss_pred ccccc-CCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEE
Q psy4038 2 FCKKK-NKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLA 80 (371)
Q Consensus 2 ~~~~~-~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~ 80 (371)
||+++ ++...++|||++||.+|+|+.+|++|+++|++|||+++||+|+|.++++||||+|++. .+++||||||++|+
T Consensus 322 ~~~~~~~~~~~l~~WD~~yyaeK~r~~~y~~de~elrpYF~l~~Vl~GlF~~~~rLfGI~~~e~--~~~~vwHpDVr~~~ 399 (683)
T COG0339 322 FAAEEEGGLPELQPWDWAYYAEKQRQEKYAFDEEELRPYFPLNKVLEGLFEVAKRLFGITFVER--KDIPVWHPDVRVFE 399 (683)
T ss_pred HHHhhccCCcccchhhHHHHHHHHHhhhcCCCHHHhhhcCChhHHHHHHHHHHHHHcCeEEEEC--CCCCccCCCceEEE
Confidence 56774 8899999999999999999999999999999999999999999999999999999987 45789999999999
Q ss_pred EEeCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHH
Q psy4038 81 VTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAM 160 (371)
Q Consensus 81 v~~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHal 160 (371)
|+|++|..+|.||+|+|+|+||++|||++++++++...+|+.|.||++++|||++|.+++|+||+|+||+||||||||+|
T Consensus 400 v~d~~g~~~g~fY~DlyaR~~KrgGAWM~~~~~~~~~~~~~~q~PV~ylvCNF~~p~~gkPaLls~dEV~TLFHEfGHgL 479 (683)
T COG0339 400 VFDENGELIGLFYLDLYARDGKRGGAWMDDFVSQRRLDDGGGQKPVIYLVCNFTKPVGGKPALLSHDEVTTLFHEFGHGL 479 (683)
T ss_pred EEcCCCCEEEEEEeecccCCCCccchHHHHhhhcccccCCCcccceEEEeccCCCCCCCCCceeeHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHH
Q psy4038 161 HSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSA 240 (371)
Q Consensus 161 H~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~ 240 (371)
|++|++++|+.+|||+|+|||||+||||||||||+|.+|..+++||+||+|||+++++++++++++++++.++||+.+|+
T Consensus 480 H~mlt~v~~~~vsGt~v~wDfVElPSQ~mE~w~~~p~vL~~~a~Hy~TGe~lP~~ll~k~laaknf~~g~~t~rql~fal 559 (683)
T COG0339 480 HHLLTRVKYPGVSGTNVPWDFVELPSQFMENWCWEPEVLAKYARHYQTGEPLPKELLDKMLAAKNFQAGLFTLRQLEFAL 559 (683)
T ss_pred HHHhhcCCccccCCCCCCcchhhccHHHHHHhhcCHHHHHHHHHhhccCCcCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC-C---CCHHHHHHHHHHHhcCCCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHhhCCCCh
Q psy4038 241 LDLEYHSSE-V---TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFEKDPFSR 314 (371)
Q Consensus 241 ~D~~lH~~~-~---~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~ 314 (371)
|||.+|... | .++.++++++.++..-.+.++..+|.++|+||| ||+|+||||+|++|+++|.|+.|++.|++|+
T Consensus 560 ~Dm~~H~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~~F~HIFagGYsAGYYSY~WaeVLsaDafa~Fee~g~~~~ 639 (683)
T COG0339 560 FDMRLHTEFDPDANADILEFEAEVLKKVAVLPSIPPRRRPHSFGHIFAGGYSAGYYSYLWAEVLSADAFAAFEEEGPFNR 639 (683)
T ss_pred HHHHhhccCCcccccCHHHHHHHHHHHhCCCCCcchhhccccccceecCcccchhHHHHHHHHHhhHHHHHHHhcCCCCH
Confidence 999999975 2 689999999999984444555678889999999 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHH
Q psy4038 315 DSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNS 353 (371)
Q Consensus 315 ~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~ 353 (371)
++|++||+.||+.|||++|++++++|+||+|+++++++.
T Consensus 640 e~G~rfrd~ILs~GGS~dp~e~f~~frGrep~~dalLr~ 678 (683)
T COG0339 640 ETGQRFRDAILSRGGSRDPMELFKAFRGREPSIDALLRH 678 (683)
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHhcCCCChhHHHHh
Confidence 999999999999999999999999999999999777654
No 2
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=100.00 E-value=1.7e-97 Score=776.30 Aligned_cols=348 Identities=25% Similarity=0.418 Sum_probs=320.7
Q ss_pred cccccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHH-HHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEE
Q psy4038 2 FCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCM-EGLNNLFNKIYGITLQHVEANNGELWSSDVYKLA 80 (371)
Q Consensus 2 ~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl-~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~ 80 (371)
++++..+...|+|||++||++++|++++++|+++|++|||+++|+ +||+.++++||||+|+++++ .++|||||++|+
T Consensus 322 ~~~~~~g~~~l~pWD~~yy~ek~r~~~~~~d~~~l~~YFpl~~Vl~~Glf~l~~~LfGi~f~~~~~--~~vWh~dV~~~~ 399 (681)
T PRK10280 322 VIDKQQGGFSAQAWDWAFYAEQVRREKYALDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFD--IPVYHPDVRVWE 399 (681)
T ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHhcCCCHHHcCCcCcHHHHHHHhHHHHHHHHcCeEEEECCC--CCCCCCCeeEEE
Confidence 455555666899999999999999999999999999999999999 69999999999999999753 469999999999
Q ss_pred EEeCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHH
Q psy4038 81 VTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAM 160 (371)
Q Consensus 81 v~~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHal 160 (371)
|+|++|.+||+||+|+|+|+||++||||.+++.+... .++.|+++++|||++|++++|+||+|+||+||||||||+|
T Consensus 400 V~d~~g~~lG~fY~Dl~~R~gK~~gawm~~~~~~~~~---~~~~Pv~~lvcNf~~p~~~~p~LL~~~eV~TlFHEfGHal 476 (681)
T PRK10280 400 IFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTL---NETRPVIYNVCNYQKPAAGQPALLLWDDVITLFHEFGHTL 476 (681)
T ss_pred EEcCCCCEEEEEEecCCCCCCCCCCCCCccccccccc---CCCCCeEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 9998899999999999999999999999887754322 2467999999999999999999999999999999999999
Q ss_pred hhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHH
Q psy4038 161 HSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSA 240 (371)
Q Consensus 161 H~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~ 240 (371)
|++|++++|+++|||+|++||||+||||||+|||+|++|+.+|+||+||+|||++++++|++++++++|+.+++|+.+|+
T Consensus 477 H~lls~~~y~~~sGt~v~~DfVE~PSq~mE~w~~~~~vL~~~a~Hy~TgepiP~~l~~~l~~ar~~~~g~~~~~ql~~al 556 (681)
T PRK10280 477 HGLFARQRYATLSGTNTPRDFVEFPSQINEHWASHPQVFARYARHYQSGEAMPDELQEKMRNASLFNKGYDMSELLSAAL 556 (681)
T ss_pred HHHHhCCCccccCCCCCCcchhcCcHHHHHHHhcCHHHHHHHhhccCCCCCCCHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC----CCHHHHHHHHHHHhcC-CCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHhhCCCC
Q psy4038 241 LDLEYHSSEV----TNTFQQLKECQNTYYG-IPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFEKDPFS 313 (371)
Q Consensus 241 ~D~~lH~~~~----~~~~~l~~~l~~~~~g-~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~ 313 (371)
|||.+|...+ .++.+.++++.+++.. ++.++++.|+++|+||| ||+|+||||+||+|+|+|+|+.|+++|++|
T Consensus 557 ~D~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Hif~ggY~AgYYsYlwaevlaaD~f~~f~~~g~~n 636 (681)
T PRK10280 557 LDMRWHCLEENEAMQDVDDFELRALVAENLDLPAVPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLT 636 (681)
T ss_pred HhHHHhccCcccccccHHHHHHHHHHHhCCCCCCCCCCCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999997532 3677777777777632 46677888999999999 599999999999999999999999989999
Q ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHH
Q psy4038 314 RDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSL 354 (371)
Q Consensus 314 ~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~ 354 (371)
+++|++||++||++|||+||++++++||||+|+++||++..
T Consensus 637 ~~~G~~fr~~iL~~GGs~d~~~~~~~FlGR~P~~~alL~~~ 677 (681)
T PRK10280 637 RENGQRFREAILSRGNSTDLERLYRQWRGHAPQIMPMLQHR 677 (681)
T ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHhcCCCCChHHHHHhc
Confidence 99999999999999999999999999999999998888653
No 3
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=100.00 E-value=6.2e-95 Score=732.21 Aligned_cols=344 Identities=52% Similarity=0.918 Sum_probs=326.7
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEeCCCCc
Q psy4038 9 KKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKEGL 88 (371)
Q Consensus 9 ~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~~~~~~ 88 (371)
.++|.|||++||++++|++++++|++++++|||+++|++||+.|+++||||+|+++++.++++|||||++|+|+|++|++
T Consensus 99 ~~~L~pwD~~yy~~~~~~~~~~~d~~~l~~YFpl~~vl~gl~~~~~~lfgi~~~~~~~~~~~~Wh~dV~~~~v~d~~~~~ 178 (458)
T cd06457 99 LSSLAPWDRDYYTGQYRQSRFDSEPSNLSPYFSLGTVMEGLSRLFSRLYGIRLVPVPLAPGEVWHPDVRKLDVVHEDEGL 178 (458)
T ss_pred cCCCCHHHHHHHHHHHHHhhcCCChHHhcccCcHHHHHHHHHHHHHHHhCeEEEecCCCCCCCcCccceEEEEEeCCCCE
Confidence 55899999999999999999999999999999999999999999999999999999877789999999999999988899
Q ss_pred ccceeeecccCCCCCCCCcccccCCceecCC----------CCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHH
Q psy4038 89 LGYIYCDFFERQKKPNQDCHFTIRGGRKLSN----------GSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGH 158 (371)
Q Consensus 89 lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~----------G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GH 158 (371)
||+||+|+|+|+||++|||++++++++...+ |.+|.|+++++|||++|++++|+||+|++|.||||||||
T Consensus 179 lG~~YlDl~~R~~K~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~q~Pv~~lvcnf~~p~~~~p~lL~~~~v~TLfHEfGH 258 (458)
T cd06457 179 LGVIYCDLFSRPGKPPGAAHFTIRCSRRLDDDDVAERGGRGGTYQLPVVALMCNFPPPSPSGPTLLSPHEVETLFHEMGH 258 (458)
T ss_pred EEEEEeecCCCCCCCCCcceeccccccccCcccccccccCCCceeCCeEEEECCCCCCCCCCCCCcCHHHHHHHHHHHhH
Confidence 9999999999999999999999999987765 888999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHH
Q psy4038 159 AMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFY 238 (371)
Q Consensus 159 alH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~ 238 (371)
+||++|++++|+.++||++++||||+||||||+|+|++++|+.+|+|++|+++||+++++++++++++++++.++||+.+
T Consensus 259 alH~~ls~~~~~~~sgt~~~~d~vE~pS~~~E~~~~~~~~L~~~a~h~~t~e~ip~~l~~~l~~~~~~~~~~~~~rq~~~ 338 (458)
T cd06457 259 AMHSMLGRTEYQHVSGTRCATDFVEVPSILMEYFASDPRVLKLFARHYSTGEPLPEEMLARLLASKNSFAALETQQQIVY 338 (458)
T ss_pred HHHHHHcCCCccccCCCCCCcchhhcCHHHHHHHHhhHHHHHHHhcccCCCCcCcHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC---CCHHHHHHHHHHHhcCCCCCCC-CccccccccccccCccchhHHHHHHHHHHHHHHHHhhCCCCh
Q psy4038 239 SALDLEYHSSEV---TNTFQQLKECQNTYYGIPYIEH-TAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSR 314 (371)
Q Consensus 239 a~~D~~lH~~~~---~~~~~l~~~l~~~~~g~~~~~~-~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~ 314 (371)
|+||+.+|...+ .++.++|+++.++++|+|..++ +.|.++|+||+||+|+||+|+||+++|+++|+++|+++++|+
T Consensus 339 a~fD~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Hl~gy~a~YYsYl~a~vla~di~~~~f~~~~~n~ 418 (458)
T cd06457 339 ALLDQELHGEQPLSPTFTSDVLRDSTEIFYGLPYVPGGTAWQLRFGHLVGYGATYYSYLFDRAIASKIWQKLFAADPLSR 418 (458)
T ss_pred HHHHHHHhCCCcccccCHHHHHHHHHHHhcCCCCCCCCCCCccccccccCccccchHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999998643 3577999999999988887666 677779999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHH
Q psy4038 315 DSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTN 352 (371)
Q Consensus 315 ~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~ 352 (371)
++|++||++||++|||++|.|++++||||||+++....
T Consensus 419 ~~g~~y~~~iL~~Ggs~~p~e~l~~flGrdp~~~~~~~ 456 (458)
T cd06457 419 EAGERLREELLKHGGGKDPWELLAGVLGKPPLVKGGAG 456 (458)
T ss_pred HHHHHHHHHHccCCCCcCHHHHHHHHcCCCCCCCcccc
Confidence 99999999999999999999999999999999876543
No 4
>PRK10911 oligopeptidase A; Provisional
Probab=100.00 E-value=8.2e-93 Score=743.31 Aligned_cols=351 Identities=28% Similarity=0.500 Sum_probs=329.8
Q ss_pred cccccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEE
Q psy4038 2 FCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAV 81 (371)
Q Consensus 2 ~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v 81 (371)
++|+..+.+.|+|||+.||.+++|+++|++|++++++|||+++|++||+.++++||||+|++.+ ++++|||||++|+|
T Consensus 319 ~~k~~~g~~~L~pWD~~yy~~~~~~~~~~~d~~~l~~YFpl~~v~~gl~~~~~~Lfgi~~~e~~--~~~vwh~dV~~~~v 396 (680)
T PRK10911 319 FAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERK--DVDVWHPDVRFFEL 396 (680)
T ss_pred HHHhhcCCCCCChhhHHHHhhHHHHhhcCCCHHHhcccCcHHHHHHHHHHHHHHHcCeeEEecC--CCCCCCCcceEEEE
Confidence 4555667788999999999999999999999999999999999999999999999999998764 57899999999999
Q ss_pred EeCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHh
Q psy4038 82 THEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 82 ~~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH 161 (371)
+|++|++||+||+|+|+|+||++||||++++++....+|.++.|+++++|||++|.+++|+||+|+||.||||||||+||
T Consensus 397 ~d~~~~~iG~~y~D~~~R~gK~~ga~~~~~~~~~~~~~g~~~~Pv~~l~~Nf~~p~~~~p~LL~~~~v~tlfHEfGHalH 476 (680)
T PRK10911 397 YDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLH 476 (680)
T ss_pred EeCCCCeEEEEEeeccCCCCCCCCccccccccccccCCCceeCCeEEEECCCCCCCCCCCcccCHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999988877778888999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcccCcc-ccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHH
Q psy4038 162 SMLARTDYQHVTGTR-CATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSA 240 (371)
Q Consensus 162 ~lls~~~~~~~sg~~-~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~ 240 (371)
++|++++|+.++||+ +++||||+|||+||+|+|+|++|+.+++||+||+|||+++++++++++++++++.++||+.+|+
T Consensus 477 ~~ls~~~~~~~sGt~~~~~D~vE~pS~~~E~~~~~~~vL~~~a~H~~tgeplp~~l~~~l~~~~~~~~~~~~~rql~~a~ 556 (680)
T PRK10911 477 HMLTRIETAGVSGISGVPWDAVELPSQFMENWCWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGL 556 (680)
T ss_pred HHHhCCCcCcCCCcCCCCchHhhccHHHHHHHhcCHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999999999999976 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC----CCHHHHHHHHHHHhcCCCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHhhCCCCh
Q psy4038 241 LDLEYHSSEV----TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFEKDPFSR 314 (371)
Q Consensus 241 ~D~~lH~~~~----~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~ 314 (371)
||+.+|...+ .++.++++++.+++..+|..+..+|+++|+||| ||+|+||||+||+++|+|+|+.|+++|++|+
T Consensus 557 ~D~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Hif~gGY~AgYYsYlwa~vla~d~~~~f~~~g~~~~ 636 (680)
T PRK10911 557 FDFRLHAEFDPDQGAKILETLAEIKKQVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNR 636 (680)
T ss_pred HHHHHhhccccccccCHHHHHHHHHHHcCCCCCCCCCcCCccccccCcCCcccchHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 9999997532 368999999999984446666788889999998 7999999999999999999999999899999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHH
Q psy4038 315 DSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSL 354 (371)
Q Consensus 315 ~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~ 354 (371)
++|++||++||++|||++|++++++|+||+|+++||++..
T Consensus 637 ~~g~~~r~~iL~~Ggs~~p~~~~~~F~GR~P~~~all~~~ 676 (680)
T PRK10911 637 ETGQSFLDNILSRGGSEEPMELFKRFRGREPQLDAMLEHY 676 (680)
T ss_pred HHHHHHHHHHHhCcCCcCHHHHHHHhcCCCCChHHHHHhc
Confidence 9999999999999999999999999999999998888653
No 5
>KOG2090|consensus
Probab=100.00 E-value=4.7e-92 Score=692.13 Aligned_cols=354 Identities=51% Similarity=0.912 Sum_probs=342.5
Q ss_pred ccccCC--CCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEE
Q psy4038 3 CKKKNK--KKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLA 80 (371)
Q Consensus 3 ~~~~~~--~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~ 80 (371)
.|++++ ..++.|||.+||..++|++.++++.+.+++||+++.||+|+..|+++||||+|.+.+..+||+|||||++++
T Consensus 332 k~k~~~~~~~e~~~WD~~YYT~~~r~~~~~~~~~~~~~fFslg~~ieGLs~L~~~LyGirl~~~~l~pGE~WhpdV~KL~ 411 (704)
T KOG2090|consen 332 KKKENNNNNAEIEPWDRPYYTSMYRQSNNSLNPSIYSPFFSLGSCIEGLSTLFQRLYGIRLIPEPLAPGEVWHPDVRKLN 411 (704)
T ss_pred HhhhcCCCCCccccccchhhhhHhhcccCCCCcceeeccccHHHHHHHHHHHHHHHhCeeeeccCCCCccccCchhhhhe
Confidence 344443 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHH
Q psy4038 81 VTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAM 160 (371)
Q Consensus 81 v~~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHal 160 (371)
|++++...||+||+|+|+|+||..|+|+|+||+|+.++||+||+|+++++|||..++...|++|++.+|+||||||||||
T Consensus 412 vv~E~eg~lG~IY~Dlf~R~gK~~g~aHFTIr~sr~l~Dg~yQlPVi~L~cnf~rss~~s~t~L~~~~vetLFHEmGHAM 491 (704)
T KOG2090|consen 412 VVHEQEGLLGYIYCDLFERPGKTVGDAHFTIRGSRQLSDGTYQLPVIVLVCNFVRSSQSSPTFLSLSEVETLFHEMGHAM 491 (704)
T ss_pred eecCCCCceeEEEEEeeccCCCCCCCceEEeeccccCCCCCeeceeeEEeecccccccCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHH
Q psy4038 161 HSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSA 240 (371)
Q Consensus 161 H~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~ 240 (371)
|++|++|+||+++||+||.||||+||.+||.|++|+.+|+.|+|||.|++++|+++++++.++++.+.+.++.+|+++|+
T Consensus 492 HSmLGrT~YQhvtGTRc~tDfaEiPSiLMEyFa~D~rVl~~~aRhy~t~e~l~~~mv~~l~~s~n~~Aa~e~q~Qv~ya~ 571 (704)
T KOG2090|consen 492 HSMLGRTHYQHVTGTRCPTDFAEIPSILMEYFANDYRVLRFFARHYSTGEPLPEDMVNRLCESRNSFAAQETQRQVFYAL 571 (704)
T ss_pred HHHhccchhccccCcccchhHhhhhHHHHHHHhcchHHHHHHHHHcCCCCCCCHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccC-CC---CCHHHHHHHHHHHhcCCCCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHhhCCCChHH
Q psy4038 241 LDLEYHSS-EV---TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFSRDS 316 (371)
Q Consensus 241 ~D~~lH~~-~~---~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~~~ 316 (371)
+||.+|.. .+ .+..+++.++.++++++++.+++.|+.+|+|++||+|.||||++++++|.-||+++|++||+|+++
T Consensus 572 ~Dq~fhg~~~~~~~~~~~~~~~~v~~k~~~~~~~~~taw~~rFsHl~gYGA~YYSYL~~r~~AS~IWq~~Fe~dPfsR~a 651 (704)
T KOG2090|consen 572 LDQEFHGIACPLIAEDTTDLLSEVKRKFSGLLYVPPTAWQLRFSHLVGYGATYYSYLFARAIASLIWQQLFENDPFSRKA 651 (704)
T ss_pred HHHHHhcccccccccchhHHHHHHHHhcCCCCCCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHhcCccchhh
Confidence 99999994 23 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHHH
Q psy4038 317 GDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQ 356 (371)
Q Consensus 317 g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~~ 356 (371)
|++||++||+.||+++|+++++++||++|+.+.+++++..
T Consensus 652 Gek~r~eil~hGG~~~P~~lva~~L~~~~~~~g~~~Al~~ 691 (704)
T KOG2090|consen 652 GEKFRKEILKHGGGRDPAELVADILGKPPLENGGVDALSK 691 (704)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHhcCCCCccchHHHHHH
Confidence 9999999999999999999999999999999999999977
No 6
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=100.00 E-value=4.3e-91 Score=695.95 Aligned_cols=349 Identities=31% Similarity=0.542 Sum_probs=328.4
Q ss_pred cccccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEE
Q psy4038 2 FCKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAV 81 (371)
Q Consensus 2 ~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v 81 (371)
++++.++...|+|||++||.+++|++.+++|++++++|||++.|++||+.++++||||+|++++. .++|||||++|+|
T Consensus 66 ~~~~~~~~~~l~~wD~~yy~~~~~~~~~~~d~~~l~~YFpl~~v~~gl~~~~~~lfgi~~~~~~~--~~~Wh~dV~~~~v 143 (422)
T cd06456 66 FAKEEGGEDELEPWDWAYYSEKLRKEKYDLDEEELRPYFPLEKVLDGLFELAERLYGITFKERTD--LPVWHPDVRVYEV 143 (422)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCHHHHhccCCHHHHHHHHHHHHHHHcCeeEEECCC--CCCCCCCceEEEE
Confidence 46666777789999999999999999999999999999999999999999999999999999864 4899999999999
Q ss_pred EeCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHh
Q psy4038 82 THEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 82 ~~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH 161 (371)
+|+++++||+||+|+++|+||++||||+++++++. +|.++.|+++++|||++|+++.|+||++++|.|||||||||||
T Consensus 144 ~d~~~~~lG~~ylDl~~R~~K~~ga~~~~~~~~~~--~~~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~tLfHEfGHalH 221 (422)
T cd06456 144 FDKDGSHIGLFYLDLYAREGKRGGAWMNNLRSQSK--NGLGQKPVAYLVCNFTKPAGGKPALLTHDEVTTLFHEFGHALH 221 (422)
T ss_pred EeCCCCeEEEEEEeccCCCCCCCCceeeccccccc--CCCCCCCEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99888999999999999999999999999987755 6788999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Q psy4038 162 SMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSAL 241 (371)
Q Consensus 162 ~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~~ 241 (371)
++|++++|+.++|+++++|+||+||++||+|+|+|++|+.+++|++||++||++++++++++++++.++.+++|+.+|.|
T Consensus 222 ~~ls~~~~~~l~~~~~~~d~~E~pS~~~E~~~~d~~vL~~~s~h~~t~~~lp~~l~~~~~~~~~~~~~~~~~~ql~~a~f 301 (422)
T cd06456 222 HLLTDVEYPSLGGTNVEWDFVELPSQFMENWAWEPEVLKLFAKHYETGEPLPDELIDKLLAARNFNSGFATVRQLEFALL 301 (422)
T ss_pred HHHhcCCccccCCCcCchhHhhccHHHHHHHhcCHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCC----CCHHHHHHHHHHHhcCCCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHhhCCCChH
Q psy4038 242 DLEYHSSEV----TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFEKDPFSRD 315 (371)
Q Consensus 242 D~~lH~~~~----~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~~ 315 (371)
|+.+|+..+ ..+.+++.++.+++.+++..+++.|.++|+||+ ||+|+||+|+||+++|+|||+.|+++|++|++
T Consensus 302 D~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Hi~~~gY~A~YYsYlws~vla~di~~~f~~~~~~~~~ 381 (422)
T cd06456 302 DLALHSLTDPEILDVVQFELDALRKEGLVIPPPPPRYFSNYFSHIFSGGYAAGYYSYKWAEVLDADAFSAFEEEGIFNRE 381 (422)
T ss_pred HHHHhcCCcccccchHHHHHHHHHHhcCCCCCCCCCCCCCccCcCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999998643 357788888888877777777888888999998 79999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHH
Q psy4038 316 SGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSL 354 (371)
Q Consensus 316 ~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~ 354 (371)
+|++||++||++|||++|.+++++|+||+|+++||++.+
T Consensus 382 ~G~~~r~~iL~~Ggs~~~~e~~~~F~Gr~p~~~a~l~~~ 420 (422)
T cd06456 382 TGRRFRDTILSKGGSRDPMELFRAFRGRDPSIEALLRRR 420 (422)
T ss_pred HHHHHHHHHhhcCCCcCHHHHHHHhcCCCCChHHHHHHc
Confidence 999999999999999999999999999999998888753
No 7
>KOG2089|consensus
Probab=100.00 E-value=3.4e-92 Score=701.10 Aligned_cols=352 Identities=27% Similarity=0.521 Sum_probs=338.4
Q ss_pred cccccC--CCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEE
Q psy4038 2 FCKKKN--KKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKL 79 (371)
Q Consensus 2 ~~~~~~--~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~ 79 (371)
+||+++ -...+..||..||+++.++..+++|+++|++|||++.|++||+.|++.||||.|+++++ .+|||+||++|
T Consensus 348 e~k~~g~~~~~~~~~wD~~yy~~~~~e~~f~vd~~~LreyFPl~~v~~Gl~~i~q~LFglkf~e~~d--a~vWh~dVr~y 425 (718)
T KOG2089|consen 348 EAKDRGAPFDGKLTAWDLRYYMKRVEESKFDVDQEDLREYFPLPVVLSGLFGIYQTLFGLKFEEATD--AEVWHADVRVY 425 (718)
T ss_pred HHHhcCCCccccchhhHHHHHHHHHHHHhcCCCHHHHHhhCCcHHHHHHHHHHHHHHhCceeeecCC--chhcccceeEE
Confidence 577777 46789999999999999999999999999999999999999999999999999999975 78999999999
Q ss_pred EEEeCC-CCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHH
Q psy4038 80 AVTHEK-EGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGH 158 (371)
Q Consensus 80 ~v~~~~-~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GH 158 (371)
.|.|.. |+++|+||+|+|+|+||+++++|+.+.+++...+|+++.||++++|||++|..++|++|.|++|+|+||||||
T Consensus 426 ~v~D~~Sg~~vG~fY~D~y~RegK~gh~~~f~l~~~~~~~~ss~~~PVaalv~nfS~p~~~kpsll~~~ev~t~FheFGh 505 (718)
T KOG2089|consen 426 TVKDSASGNPVGYFYLDPYPREGKYGHAAVFGLQPGCLQKDSSRRIPVAALVCNFSKPQSDKPSLLGHDEVETLFHEFGH 505 (718)
T ss_pred eccCCCCCceeeEEEeccCCCccccchhhhhccchhhhccCCccccchHHHHHhcCCcccCCCCccchHHHHHHHHHHhH
Confidence 999964 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCcccCc-cccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHH
Q psy4038 159 AMHSMLARTDYQHVTGT-RCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVF 237 (371)
Q Consensus 159 alH~lls~~~~~~~sg~-~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~ 237 (371)
+||++|++++|+.+||+ +++|||||+||||||||+|++..|..+|+||+||++||++++++|++++..++|+.++|||.
T Consensus 506 ~~q~ll~Qa~~~~fsG~~~vewDave~psq~Lenwv~~~d~L~~lS~Hy~tge~l~eEl~~kl~~~r~~~~gl~tlrqL~ 585 (718)
T KOG2089|consen 506 VLQHLLTQADFARFSGPRNVEWDAVEVPSQFLENWVWDPDTLRSLSKHYKTGEPLPEELLKKLILTRTVNAGLFTLRQLV 585 (718)
T ss_pred HHHHHHhcCccccccCcccCCcchhhchHHHHHHhccCchHhhhhcccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHh-hCCCCh
Q psy4038 238 YSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFE-KDPFSR 314 (371)
Q Consensus 238 ~a~~D~~lH~~~~~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~-~~~~~~ 314 (371)
+|.||+.+|+....+..+.|++++++|.++|..+++..+|+|+||+ ||+|+||+|+||+|+|+|||+++|+ +|..|.
T Consensus 586 ~a~~D~~lht~~d~~~~~~~~~l~~~i~~~p~~~~d~~pcsF~hifa~gy~A~yY~yLWsEv~aaDif~t~fe~~g~~N~ 665 (718)
T KOG2089|consen 586 LADFDLELHTKTDADLADTYRQLCQEISIVPATPGDNMPCSFGHIFAGGYAAGYYSYLWSEVLAADIFSTFFEQEGEDNI 665 (718)
T ss_pred HHhhhHHHhhccccchHHHHHHhchhheecCCCCCCCCCccccchhcCchHHHHHHHHHHHHHHHHHHHHHhhhcCCccH
Confidence 9999999999877777899999999999999999999999999998 5999999999999999999999988 688888
Q ss_pred -HHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHH
Q psy4038 315 -DSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLM 355 (371)
Q Consensus 315 -~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~ 355 (371)
++|+|||+.||++||+.+++|++++|+||+|+.+||++.+-
T Consensus 666 ~~~G~ryR~tiLa~GG~~~~~e~f~~FlGRePS~~Afl~s~g 707 (718)
T KOG2089|consen 666 KEVGMRYRNTILAPGGGKDPMEVFKRFLGREPSQEAFLKSLG 707 (718)
T ss_pred HHHHHHHHHhhhcCCCCccHHHHHHHhhCCCCChhHHHHhhc
Confidence 99999999999999999999999999999999999998864
No 8
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=100.00 E-value=1.3e-85 Score=667.41 Aligned_cols=350 Identities=30% Similarity=0.589 Sum_probs=328.3
Q ss_pred ccccCCCC--CcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEE
Q psy4038 3 CKKKNKKK--GYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLA 80 (371)
Q Consensus 3 ~~~~~~~~--~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~ 80 (371)
+|+..+.+ +|.|||+.||+++++++++++|+.++++|||++.|++|++.++++|||++|+++.. .++|||||++|+
T Consensus 117 k~~~~~~~~~~l~~wD~~y~~~~~~~~~~~~~~~~~~~yf~~~~~~~~i~~~~~~lfg~~~~~~~~--~~~w~~dv~~~~ 194 (472)
T cd06455 117 KKKEVPEAGDRIYPWDLAYYMERVEEEKYDVDQEKIREYFPLEVVIEGMLDIYQRLFGLRFEEVPD--ASVWHEDVRLYS 194 (472)
T ss_pred HHHhcCCCCCCCCHhhHHHHHHHHHHHhcCCCHHHHhccCcHHHHHHHHHHHHHHHhCeEEEeCCC--CCCCCCcceEEE
Confidence 34444544 69999999999999999999999999999999999999999999999999999854 379999999999
Q ss_pred EEeCC-CCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHH
Q psy4038 81 VTHEK-EGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHA 159 (371)
Q Consensus 81 v~~~~-~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHa 159 (371)
|+|++ |+++|++|+|+++|+||++||||+++++++...+|.+|.|+++|+|||++|.+++|++|++++|.|||||||||
T Consensus 195 v~d~~~~~~~g~~ylD~~~R~gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll~~~~V~TLfHEfGHa 274 (472)
T cd06455 195 VWDADTGEFLGYFYLDLHPREGKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLLRHDEVETFFHEFGHV 274 (472)
T ss_pred EEECCCCCEEEEEEeecCCCCCCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99976 68999999999999999999999999999888899989999999999999999999999999999999999999
Q ss_pred HhhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHH
Q psy4038 160 MHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYS 239 (371)
Q Consensus 160 lH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a 239 (371)
||++|+++++++++|+++++||||+|||+||+|+|+|++|+.+++|++|+++||+++++++++++++++++.++||+.+|
T Consensus 275 lH~~ls~~~~~~~sg~~~~~d~aE~pS~~~E~~~~~~~~l~~l~~h~~t~e~i~~~li~~~~~~~~~~~~~~~~~q~~~a 354 (472)
T cd06455 275 IHHLLGRTKYARFSGTRVERDFVEAPSQMLENWCWEPEVLKRLSKHYKTGEKIPDELIERLIASRHFNRGLFYLRQLFFA 354 (472)
T ss_pred HHHHhcCCCccccCCCcCChhhhhcchHHHHHHhcCHHHHHHHhhccCCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCC--CCHHHHHHHHHHHhcCCCCCCCCccccccccccc-cCccchhHHHHHHHHHHHHHHHHhhCCCChHH
Q psy4038 240 ALDLEYHSSEV--TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVG-YGAKYYSYLLSRAVASWIWQSYFEKDPFSRDS 316 (371)
Q Consensus 240 ~~D~~lH~~~~--~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~~-Y~a~YYsYl~s~v~A~~i~~~~~~~~~~~~~~ 316 (371)
.||+.+|...+ .++.++|.++.++++|.+..+++.|.++|+|+++ |+++||+|+||+++|+++|++++++|++|+++
T Consensus 355 ~fd~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~H~~~~Y~a~yY~Y~~a~~la~~~~~~~~~~~~~~~~~ 434 (472)
T cd06455 355 LFDLALHTGDPADLDTTKLYNDLREEISLIPSTEGTHGPASFGHLAGGYDAGYYGYLWSEVFAADMFSSFFKDGLLNPEV 434 (472)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999998765 4899999999999988776566666679999996 68999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHH
Q psy4038 317 GDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSL 354 (371)
Q Consensus 317 g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~ 354 (371)
|++||++||++|||++|.|++++||||||++++|++.+
T Consensus 435 g~~y~~~~L~~Ggs~~p~ell~~flGr~~~~~a~~~~~ 472 (472)
T cd06455 435 GLRYRDTVLAPGGSKDAADMLKDFLGREPNNDAFLKSL 472 (472)
T ss_pred HHHHHHHHhcCcCCcCHHHHHHHHhCCCCChhHHhhcC
Confidence 99998899999999999999999999999999998753
No 9
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=100.00 E-value=1.3e-82 Score=644.45 Aligned_cols=350 Identities=37% Similarity=0.671 Sum_probs=317.4
Q ss_pred ccccCCCC-CcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEE
Q psy4038 3 CKKKNKKK-GYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAV 81 (371)
Q Consensus 3 ~~~~~~~~-~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v 81 (371)
+++..|.+ +|+|||++||+++++++.+++|+.++++|||++.|++||+.|+++||||+|+++++..+++|||||++|+|
T Consensus 96 ~~~~~g~~~~l~~wD~~y~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~~l~~~lfgi~~~~~~~~~~~~w~~dv~~~~v 175 (458)
T PF01432_consen 96 KKKRLGLEKKLRPWDVAYYMEQYRQERYDLDEEELSPYFPLEEVLEGLFELAERLFGIRFEEVPDADGEVWHPDVRKFEV 175 (458)
T ss_dssp HHHHTT-SSSBBGGGHHHHHHHHHHHHTSSSHHHHGGG-BHHHHHHHHHHHHHHHHTEEEEECTCGGHHHSSTT-EEEEE
T ss_pred HHHhcCCccccccchhHHHhhHHHHHHhccchhhcCCcCcHHHHHHHHHHHHHHHhcEEEEecccccccceecceeEEEE
Confidence 45567776 99999999999999999999999999999999999999999999999999999976667899999999999
Q ss_pred EeC--CCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHH
Q psy4038 82 THE--KEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHA 159 (371)
Q Consensus 82 ~~~--~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHa 159 (371)
+|. ++.++|++|+|+++|+||++||||+++++++ ++|++|.|+++|+|||++|..++|++|++++|.|||||||||
T Consensus 176 ~d~~~~~~~ig~~ylDl~~R~gK~~ga~~~~~~~~~--~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~tLfHE~GHa 253 (458)
T PF01432_consen 176 WDEIFSGMFIGYIYLDLYPRPGKRSGAFCFTLRPSR--SDGERQLPVPYIFCNFTGPSAGKPSLLSHDDVETLFHEFGHA 253 (458)
T ss_dssp EETHTTHCECEEEEEEES--TTS-SS-EEEEEEC-B--TTSTCECEEEEEEEEE-S-BTTC--B-SHHHHHHHHHHHHHH
T ss_pred eehhhcccchhcccccchhcCCCCCCceeCCccCcc--ccccCCCCceEEEecCCCCCCCCCCccChhhHHHHHHHHhHH
Confidence 998 6789999999999999999999999999988 789999999999999999999999999999999999999999
Q ss_pred HhhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHH
Q psy4038 160 MHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYS 239 (371)
Q Consensus 160 lH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a 239 (371)
||++|+++++++++|+++++|+||+||++||+|++++++++.+++|++++++||++++++++++++.+.++.+.+|+.++
T Consensus 254 ~H~~ls~~~~~~~sg~~~~~d~aE~~S~~~E~~~~~~~~l~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ql~~a 333 (458)
T PF01432_consen 254 MHSLLSRTKYQHLSGTRVPMDFAEFPSQFMENWLWDPLVLKAFSRHYETGEPIPEELLEDLIASRNFFAAIFLFRQLLFA 333 (458)
T ss_dssp HHHHHCCCSSGGGSTTSS-CHHCHHHHHHHHHHGGCHHHHHHH-BSTTTHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCchhHHHHhcchHHHHHhhhchhhhhhhccChhhhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCC------CHHHHHHHHHHHhcCCCCCCCCcccccccccc--ccCccchhHHHHHHHHHHHHHHHHhhCC
Q psy4038 240 ALDLEYHSSEVT------NTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV--GYGAKYYSYLLSRAVASWIWQSYFEKDP 311 (371)
Q Consensus 240 ~~D~~lH~~~~~------~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~--~Y~a~YYsYl~s~v~A~~i~~~~~~~~~ 311 (371)
.||+.+|+..+. ++.++|.++.+++++.+..++..|+++|+|++ +|+++||+|+||+++|+++|++++++++
T Consensus 334 ~fd~~~h~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~hl~~~~Y~a~yY~Y~ya~~~a~~~~~~~~~~~~ 413 (458)
T PF01432_consen 334 LFDQELHESPEDGEPESEDLNELYRELQKEYYGDPSDPDDYFPASFSHLFSHFYAAGYYSYLYAEVLAADLFSQFFEEDP 413 (458)
T ss_dssp HHHHHHCCHCCCTHHHHHHHHHHHHHHHHHCCTTTCBTTCCGGGGGGGGHCCCGTTTTTCHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHhccccCCccchhHHHHHHHHHHHhcCcchhccccccceehhhccCccCCCCchhHHHHHHHHHHHHHHHhcCC
Confidence 999999997642 46899999999999988778888888999998 7999999999999999999999999899
Q ss_pred CChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHH
Q psy4038 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSL 354 (371)
Q Consensus 312 ~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~ 354 (371)
+|+++|.++|+++|++|||++|.|++++|+||+|+++++++++
T Consensus 414 ~n~~~g~~~~~~~L~~Ggs~~~~e~l~~~~g~~~~~~~~~~~~ 456 (458)
T PF01432_consen 414 LNRETGRRFYKEFLSPGGSKDPLELLKKFLGREPSPDAFLKAL 456 (458)
T ss_dssp TCHHHHHHHHHHHCTTTTSS-HHHHHHHCCSSTTSSHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCCCHHHHHHHhCCCCCChHHHHHHc
Confidence 9999999999999999999999999999999999999998876
No 10
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=100.00 E-value=7.3e-59 Score=457.99 Aligned_cols=290 Identities=24% Similarity=0.386 Sum_probs=264.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEeCCC
Q psy4038 7 NKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHEKE 86 (371)
Q Consensus 7 ~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~~~~ 86 (371)
.+...+.|| .+++|+..+++|||++.|++|++.++
T Consensus 69 ~~~~~~~~~------------~~~~~~~~~~~~f~~~~~~~~~~~~~--------------------------------- 103 (365)
T cd06258 69 EEIYGELPA------------RYDVDSALLKEFFDAERPWEGALPFF--------------------------------- 103 (365)
T ss_pred cCCcccccc------------cccCCHhhccCcCChHHHHHHHHHhH---------------------------------
Confidence 344457777 57889999999999999999998877
Q ss_pred CcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhc
Q psy4038 87 GLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLAR 166 (371)
Q Consensus 87 ~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~ 166 (371)
|+|+++|+||++||||+++++++ .++.|.++|+|||++|+.++|+|+++++|.|||||||||+|+++++
T Consensus 104 ------~lD~~~R~gK~~~a~~~~~~~~~-----~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~tl~HE~GHa~h~~l~~ 172 (365)
T cd06258 104 ------YLDLYDRKGKYPHGFCTGLDPGF-----NRQDKDVRILANFTSPAAPDPVLLGHDDINTLFHEFGHAVHFLLIQ 172 (365)
T ss_pred ------hccCCCCCCCCCCCeeccccCCC-----CCCCCeEEEEccCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHhc
Confidence 99999999999999999988664 3478999999999999999999999999999999999999999999
Q ss_pred cCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhc
Q psy4038 167 TDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYH 246 (371)
Q Consensus 167 ~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~~D~~lH 246 (371)
++++.++|+++++||+|+||++||+|++++++|+.+++|++++ ++|.++++++++......+..+.+|+.++.||+.+|
T Consensus 173 ~~~~~~~g~~~~~~~~E~~S~~~E~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 251 (365)
T cd06258 173 QRYPFQERTPTSTDFAEAQSMFLESFATDPEWLERYARHYQGG-VVPDELIEKLIAARLPNTLYETRRILVVAKFEKALY 251 (365)
T ss_pred CCCCcCCCCCCCccHHhccHHHHHHHHCCHHHHHHHhhhcCCC-CCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9998889999999999999999999999999999999999988 899999999998888888888999999999999999
Q ss_pred cCCC--CCHHHHHHHHHHHhcCCCCCCCCccccccccccc-cCccchhHHHHHHHHHHHHHHHHhhC---CCChHHHHHH
Q psy4038 247 SSEV--TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVG-YGAKYYSYLLSRAVASWIWQSYFEKD---PFSRDSGDAY 320 (371)
Q Consensus 247 ~~~~--~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~~-Y~a~YYsYl~s~v~A~~i~~~~~~~~---~~~~~~g~~y 320 (371)
+... .++.++|+++.+++.|++..+++.+.++|.|+++ |+++||+|+||+++|++||+.+++++ +.++++|++|
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~H~~~gy~~yyy~Y~~~~v~a~qi~~~~~~~~~~~~~~~~~g~~l 331 (365)
T cd06258 252 ENPDRELELQKLWRDLVKEILGVRPDPSTPDPAAFPHLAGGSPAYYYGYLLAEMLASQLRATFKKKVGYLTDNPEAGPRL 331 (365)
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCCCCCCCCCCccchhccCcccchHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 8654 4699999999999988876666555568999985 99999999999999999999998865 5789999999
Q ss_pred HHHHhcCCCCccHHHHHHHHhCCCCChHHHHHH
Q psy4038 321 RLNCLSHGGGKPASKLVSDFLQKDITAESLTNS 353 (371)
Q Consensus 321 r~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~ 353 (371)
|++||++|||++|.|++++++|++|++++|++.
T Consensus 332 ~~~il~~G~s~~~~el~~~~~G~~~~~~a~~~~ 364 (365)
T cd06258 332 REHILRPGNSEPWKELLKRATGEDPNADAFLDH 364 (365)
T ss_pred HHHHccCcCCcCHHHHHHHHcCCCCChHHHHhc
Confidence 988999999999999999999999999998864
No 11
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=100.00 E-value=7.3e-43 Score=350.47 Aligned_cols=285 Identities=18% Similarity=0.229 Sum_probs=221.2
Q ss_pred ccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEeC
Q psy4038 5 KKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTHE 84 (371)
Q Consensus 5 ~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~~ 84 (371)
+..|.+.+.|||+.|+..+.+ .+.|+++..++++..+++.+ |.++..+ .+
T Consensus 130 ~~lg~~~l~~wD~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~l-~~~~~~~-----------------~~- 179 (427)
T cd06459 130 KLLGLDKLRPYDLYAPLVSGN-----------PPKYTYEEAKELVLEALSPL-GPEYAEF-----------------AK- 179 (427)
T ss_pred HHhCCCcCcHhhcCCCCCCCC-----------CCcCcHHHHHHHHHHHHHcc-CHHHHHH-----------------HH-
Confidence 445677899999876443221 26799999999999988775 5433221 11
Q ss_pred CCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhh
Q psy4038 85 KEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSML 164 (371)
Q Consensus 85 ~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~ll 164 (371)
..++..|+|+++|+||++||||+++.++ ..| +|+|||++ ++++|.|||||||||+|+++
T Consensus 180 --~~~~~~~iD~~~r~gK~~gaf~~~~~~~--------~~p--~i~~n~~~---------~~~~v~tl~HE~GHa~h~~~ 238 (427)
T cd06459 180 --RAFEERWIDVEPRKGKRSGAYCTGLPPG--------KHP--FILMNFNG---------TLDDVFTLAHELGHAFHSYL 238 (427)
T ss_pred --HHhhCCCeeccCCCCCCCCeecCCCCCC--------CCC--eEEecCCC---------ChhhHHHHHHHhhHHHHHHH
Confidence 2334559999999999999999987632 346 66899996 89999999999999999999
Q ss_pred hccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHH-HHHHHHHHHHHHH
Q psy4038 165 ARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQAS-EMQAQVFYSALDL 243 (371)
Q Consensus 165 s~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~-~~~~ql~~a~~D~ 243 (371)
++..++ ..+.++++|++|+||++||+|++++. .+|+++.+ .+..++..++ .... .+++|+.++.||+
T Consensus 239 ~~~~~~-~~~~~~~~~~~E~~S~~~E~~~~~~l-----~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~fe~ 306 (427)
T cd06459 239 SRDNQP-YLYSDYPIFLAEIASTFNELLLFDYL-----LKFAKDPE-EKLYLLEHLL-----EDIRATLPRQTMFAEFEH 306 (427)
T ss_pred HccCCC-cccCCCCchhhHHHHHHHHHHHHHHH-----HHhCCCHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 987544 34457899999999999999999875 35665421 2222333222 2233 5789999999999
Q ss_pred HhccCC-------CCCHHHHHHHHHHHhcCCCC----CCCCccccccccccccCccchhHHHHHHHHHHHHHHHHhhCCC
Q psy4038 244 EYHSSE-------VTNTFQQLKECQNTYYGIPY----IEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPF 312 (371)
Q Consensus 244 ~lH~~~-------~~~~~~l~~~l~~~~~g~~~----~~~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~ 312 (371)
.+|+.. +.++.++|+++.++|.|... ..+..|+ +|+|++..++|||+|+||.++|+++|+.+.+++
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~y~g~~~~~~~~~~~~w~-~~~H~~~~~fYyy~Y~~g~~~a~~l~~~~~~~~-- 383 (427)
T cd06459 307 EVYENPEEGEPLTAEELNEIYRELEKKYGGDLVEIDEEHGYEWA-RIPHFYYVPFYVYPYAFGQLAALALYAKYKEDG-- 383 (427)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCccccCCccCeeee-ecCeecCCCCcChHHHHHHHHHHHHHHHHHHcC--
Confidence 999742 24678999999999987543 2346687 899998778999999999999999999987754
Q ss_pred ChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHHHHH
Q psy4038 313 SRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQEL 358 (371)
Q Consensus 313 ~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~~~l 358 (371)
++++++| +++|+.|||++|.|+++.+ |.|++..++++...+.+
T Consensus 384 -~~~~~~y-~~~L~~Ggs~~~~ell~~~-g~d~~~~~~~~~~~~~~ 426 (427)
T cd06459 384 -EGAVEKY-LELLKAGGSKSPLELLKKA-GVDLTSPDFWEEAIDVI 426 (427)
T ss_pred -ccHHHHH-HHHHHccCCCCHHHHHHHc-CcCCCChHHHHHHHHhh
Confidence 4799999 5999999999999999975 99999999999887654
No 12
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=100.00 E-value=6.2e-42 Score=353.85 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=213.6
Q ss_pred ccccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEE
Q psy4038 3 CKKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVT 82 (371)
Q Consensus 3 ~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~ 82 (371)
.++..|.+.+.+||+.| .++....++|||.+.+++++..+++++ |.++.++ .
T Consensus 242 k~k~lG~~~l~~wD~~~----------~~~~~~~~~~~~~e~~~~~~~~~~~~l-~~~~~e~-----------------~ 293 (549)
T TIGR02289 242 KKKRLGIKTLRPWDESA----------VFLDGNVKPFGNVDFLLEKAEKMYKEL-SLEFYEF-----------------F 293 (549)
T ss_pred HHHhCCCCcCChhhccC----------CCCCCCcCCCCCHHHHHHHHHHHhcCC-CcHHHHH-----------------H
Confidence 34566788899999853 455567789999999999999999886 6554422 1
Q ss_pred eCCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhh
Q psy4038 83 HEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHS 162 (371)
Q Consensus 83 ~~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~ 162 (371)
+ ..++..|+|+++|+||++||||++++++ ..| +|+|||++ +++||.||+||+|||+|+
T Consensus 294 ~---~~~~~~~iD~~~r~gK~~Gayc~~~~~~--------~~P--~I~~Nf~~---------t~~dv~TL~HElGHa~H~ 351 (549)
T TIGR02289 294 N---FMREKNLLDLESRKGKAAGGYCTYLPKY--------KAP--FIFSNFNG---------TSGDIDVLTHEAGHAFHV 351 (549)
T ss_pred H---HHHhcCccccCCCCCCCCCcccCCCCCC--------CCc--EEEEeCCC---------ChhHHHHHHHHhhHHHHH
Confidence 1 2445569999999999999999998753 468 56799996 999999999999999999
Q ss_pred hhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHH-HHHHHHHHH
Q psy4038 163 MLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEM-QAQVFYSAL 241 (371)
Q Consensus 163 lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~-~~ql~~a~~ 241 (371)
++++.. +.......++|+||+||++||+|+|++. .++++++++.++.++..|. +++.+ .+|..+..|
T Consensus 352 ~~s~~~-~~~~~~~~~~~~aE~aS~~~E~l~~~~l-----~~~~~~~e~~~~~~~~~L~------~~~~~~~~~~~~d~f 419 (549)
T TIGR02289 352 YESRKD-LLPEYRWPTYEAAELASMSMELLSMPWW-----DLFYTDEKDLKKAKISHLK------GALSFLPYGVIVDHF 419 (549)
T ss_pred HHhcCC-cccccccCcchhhhhhHHHHHHHHHHHH-----HHHcCCcchHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 999752 2122223589999999999999999873 3567777776766665443 33443 366667777
Q ss_pred HHHhccCCC---CCHHHHHHHHHHHhcCCC---C----CCCCccccccccccccCccchhHHHHHHHHHHHHHHHHhhCC
Q psy4038 242 DLEYHSSEV---TNTFQQLKECQNTYYGIP---Y----IEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDP 311 (371)
Q Consensus 242 D~~lH~~~~---~~~~~l~~~l~~~~~g~~---~----~~~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~~~ 311 (371)
...+|...+ .++.++|.++.++|.+-. . ..+..|+ +++|++++++|||+|.||+++|.++|+++.+ ++
T Consensus 420 e~~vy~~~~lt~~e~~~~~~~l~~~y~~~~~~~~~~~~~~~~~W~-~~~H~~~~pFYyy~Y~~a~~~a~~l~~~~~~-~~ 497 (549)
T TIGR02289 420 QHWVYENPNHTPEERDEKYAELEKRYQPSTVYIAGLELEIGTFWL-RQLHIFEVPFYYIEYTIAQIGALQIYKIYKE-DP 497 (549)
T ss_pred HHHHccCCCCCHHHHHHHHHHHHHHhCCCcccCCccccccCCcce-eeceeecCCCcchhhHHHHHHHHHHHHHHHh-CH
Confidence 767776532 568899999999986311 1 2346787 7999998899999999999999999999866 43
Q ss_pred CChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCC
Q psy4038 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDIT 346 (371)
Q Consensus 312 ~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~ 346 (371)
+.+.++| .++|+.|||++|.|+++.+ |-|.+
T Consensus 498 --~~~~~~Y-~~~L~~Ggs~~~~ell~~a-Gid~~ 528 (549)
T TIGR02289 498 --EKALKDY-KKLCSAGGSQSFLELYETA-GLTFP 528 (549)
T ss_pred --HHHHHHH-HHHHhccCCcCHHHHHHHh-CCCCC
Confidence 5788888 7999999999999999996 87755
No 13
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=100.00 E-value=2.4e-41 Score=352.31 Aligned_cols=286 Identities=20% Similarity=0.240 Sum_probs=215.4
Q ss_pred cccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEe
Q psy4038 4 KKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTH 83 (371)
Q Consensus 4 ~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~ 83 (371)
|+..|.+++.+||+.+ .+ .....+.++.+...+.+...++.+ |-++...- +. ..
T Consensus 282 ~~~lgl~~l~~~D~~~----------p~-~~~~~~~~~~e~a~~~v~~~~~~l-~~e~~~~~-----------~~--~~- 335 (587)
T TIGR02290 282 AKLLGKEKLDFYDLYA----------PL-GDSSAKTYTFDEAKELVLEAFGKF-SPEMADFA-----------EK--AF- 335 (587)
T ss_pred HHHhCCCcccHHHcCC----------CC-CCCCCCeecHHHHHHHHHHHHHhc-CHHHHHHH-----------HH--HH-
Confidence 4566778899999732 12 222356678877777777766443 43333210 00 01
Q ss_pred CCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhh
Q psy4038 84 EKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSM 163 (371)
Q Consensus 84 ~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~l 163 (371)
+++ |+|+++|+||++||||.++.++ ..| +|+|||++ ++++|.|||||||||+|++
T Consensus 336 ~~~------~iD~~~r~gK~~Ga~~~~~~~~--------~~p--~i~~N~~~---------~~~~v~TL~HE~GHa~H~~ 390 (587)
T TIGR02290 336 EEG------WIDAEPRPGKRGGAFCTGFPPS--------KEP--RVLMNYDG---------SRRDVSTLAHELGHAYHSE 390 (587)
T ss_pred HcC------CcccCCCCCCCCCcccCCCCCC--------CCC--EEEEecCC---------CchhHHHHHHHhhHHHHHH
Confidence 233 9999999999999999987643 347 57899996 8999999999999999999
Q ss_pred hhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHH-HHHHHHHHHHH
Q psy4038 164 LARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASE-MQAQVFYSALD 242 (371)
Q Consensus 164 ls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~-~~~ql~~a~~D 242 (371)
+++.. ...++++++|+||+||++||+|+|++. |+. +. +++....++. .++.+++. +++|+.++.||
T Consensus 391 ls~~~--~~~~~~~~~~~aE~~S~~~E~l~~~~l-l~~----~~-----~~~~~~~~~~-~~l~~~~~~~~~q~~~~~fE 457 (587)
T TIGR02290 391 LAKDQ--PLLNARYPMTLAETASIFAEMLLFDAL-LKE----AK-----TDEEKLSLLA-EKLEDAIATLVRIHARFLFE 457 (587)
T ss_pred HHccC--CcccCCCCchhhhHHHHHHHHHHHHHH-Hhh----CC-----CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99763 344567999999999999999999984 433 22 2233334443 46777774 68999999999
Q ss_pred HHhccCC--C----CCHHHHHHHHHHHhcCCCC--CC--CCccccccccccccCccchhHHHHHHHHHHHHHHHHhhCCC
Q psy4038 243 LEYHSSE--V----TNTFQQLKECQNTYYGIPY--IE--HTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPF 312 (371)
Q Consensus 243 ~~lH~~~--~----~~~~~l~~~l~~~~~g~~~--~~--~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~~~~ 312 (371)
+.+|... + .++.++|.++.++++|... .+ +..|. +++|++..++|||+|+||.++|.++|+++.+++.
T Consensus 458 ~~l~~~~~~~~lt~~~l~~~~~~~~~~~~g~~~~~~~~~~~~w~-~~~H~y~~~fY~y~Y~~g~~~a~~l~~~~~~~~~- 535 (587)
T TIGR02290 458 RRFHEARKEGELSADDICDLMLEAQKESYGDALDESELHPYMWA-YKPHFYHAPFYNYPYTFGYLFVLGLYAKYREEGE- 535 (587)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhCcccccCCCCCceee-cCCeecCCCCcChhhHHHHHHHHHHHHHHHHCCh-
Confidence 9999632 1 4688999999998877532 22 34566 8999987678889999999999999999877553
Q ss_pred ChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHHHHHh
Q psy4038 313 SRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELD 359 (371)
Q Consensus 313 ~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~~~l~ 359 (371)
.+.++| .+||+.|||++|.|++++ +|+||+.++|++.-++.++
T Consensus 536 --~~~~~y-~~~L~~Ggs~~p~ell~~-~G~d~~~~~~~~~~~~~~~ 578 (587)
T TIGR02290 536 --SFVPKY-IALLRDTGSMTPEELVKK-FGFDLTSPDFWQKGIDVIE 578 (587)
T ss_pred --hHHHHH-HHHHHCcCCCCHHHHHHH-hCcCCCChHHHHHHHHHHH
Confidence 577889 599999999999999999 8999999999977766554
No 14
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=100.00 E-value=1.3e-40 Score=347.39 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=213.5
Q ss_pred cccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEe
Q psy4038 4 KKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTH 83 (371)
Q Consensus 4 ~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~ 83 (371)
|+..|.+++.+||+.. .+. ....+.++.+...+-+..-++ .||.+|... |+. ..+
T Consensus 286 ~k~lg~~~l~~~D~~~----------~~~-~~~~~~~~~~~a~~~v~~~~~-~~g~~~~~~-----------~~~--~~~ 340 (591)
T TIGR00181 286 KKVLKLDKMEPYDLYL----------PLV-KEKNPKFSIEEAKELILKSLE-PLGEEYIKI-----------LKR--AFN 340 (591)
T ss_pred HHHhCCCcccHHHccC----------CCC-CCcCCcccHHHHHHHHHHHHh-ccCHHHHHH-----------HHH--Hhh
Confidence 4566788899999741 111 123456888887666666554 478777642 111 011
Q ss_pred CCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhh
Q psy4038 84 EKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSM 163 (371)
Q Consensus 84 ~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~l 163 (371)
+ | |+|+++|+||++||||+++.+ ..| +|+|||++ ++++|.||+|||||+||++
T Consensus 341 -~----~--wiD~~~r~gK~~Ga~~~~~~~---------~~p--~il~N~~~---------~~~dv~TLaHElGHa~H~~ 393 (591)
T TIGR00181 341 -E----R--WVDYAENKGKRSGAYSIGGYK---------VKP--YILMNWDG---------TLNSVFTLAHELGHSMHSY 393 (591)
T ss_pred -C----C--CeeecCCCCCCCCcccCCCCC---------CCC--eEEEecCC---------CcchHHHHHHHhhhHHHHH
Confidence 2 2 999999999999999998642 456 56899996 9999999999999999999
Q ss_pred hhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Q psy4038 164 LARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDL 243 (371)
Q Consensus 164 ls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~~D~ 243 (371)
+++..++... .++++++||+||++||+|++++. .+|+ ++++.+..+++.++. ++.. .++||++++.||+
T Consensus 394 ~~~~~~~~~~-~~~~~~~aE~aS~~~E~l~~~~l-----~~~~-~~~~~k~~~l~~~l~--~~~~--~~~~q~~~~~Fe~ 462 (591)
T TIGR00181 394 FSSKHQPYPN-SDYSIFYAEIASTFNELLLADYL-----LKNS-NDPEMKIYILLERIS--NFFG--TFTRQTLFAEFEY 462 (591)
T ss_pred HHccCCCCcc-CCCCchhhhHhHHHHHHHHHHHH-----HhhC-CCHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHH
Confidence 9976555444 47999999999999999999984 3456 555667778877764 3333 4689999999999
Q ss_pred HhccCC----C---CCHHHHHHHHHHHhcCCCC-C---CCCccccccccccccCccchhHHHHH--HHHHHHHHHHHhhC
Q psy4038 244 EYHSSE----V---TNTFQQLKECQNTYYGIPY-I---EHTAWQHRFSHLVGYGAKYYSYLLSR--AVASWIWQSYFEKD 310 (371)
Q Consensus 244 ~lH~~~----~---~~~~~l~~~l~~~~~g~~~-~---~~~~w~~~f~Hl~~Y~a~YYsYl~s~--v~A~~i~~~~~~~~ 310 (371)
.+|... + .+++++|.++.++++|... . .+..|. +++|++ .+ ||+|.||. ++|..+|+++.+++
T Consensus 463 ~~~~~~~~~~~lt~~~l~~~~~~~~~~~~g~~~~~~~~~~~~w~-~~~Hfy--~~-fY~Y~Ya~g~~~a~~l~~~~~~~~ 538 (591)
T TIGR00181 463 EAYELIEEGEPLTAETLNEIYANLLKKYFGDLVKIDEGAGLTWM-RIPHFY--MG-FYVYKYATGQVAATALYEKIKEEG 538 (591)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCccccCCcccceee-ecCccc--CC-CcCHHHHHHHHHHHHHHHHHHHCC
Confidence 999642 2 4688999999999888422 1 135576 899974 44 67777755 66666799987766
Q ss_pred CCChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHHHHHh
Q psy4038 311 PFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELD 359 (371)
Q Consensus 311 ~~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~~~l~ 359 (371)
+ .++++|+ ++|+.|||++|.|+++.+ |-|++..+|++..++.++
T Consensus 539 ~---~~~~~Y~-~~L~~Ggs~~p~ell~~~-Gvd~~~~~~~~~~~~~~~ 582 (591)
T TIGR00181 539 K---GAVEKYL-KFLKSGGSKYPLETLKIA-GVDLTKPQPWQAAINIFS 582 (591)
T ss_pred c---cHHHHHH-HHHhCcCCCCHHHHHHHc-CcCCCChHHHHHHHHHHH
Confidence 4 6899996 999999999999999995 999999888877655543
No 15
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=290.35 Aligned_cols=289 Identities=20% Similarity=0.293 Sum_probs=217.6
Q ss_pred cccCCCCCcccccHHHHHHHHHHHhcCCCcccCCCCCChhHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEEEe
Q psy4038 4 KKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAVTH 83 (371)
Q Consensus 4 ~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yf~l~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v~~ 83 (371)
|+..|.+++.|||+. ..+......+-++.+...+-+.+.++.| |-++..+ |+.. .
T Consensus 286 ~k~Lgl~~l~~yD~~----------~p~~~~~~~~~~s~~ea~~~v~~~l~~l-g~ey~~~-----------~~~a--~- 340 (598)
T COG1164 286 AKVLGLEKLRPYDLY----------APLLDKDPSPEYSYEEAKELVLKALAPL-GPEYAKI-----------ARRA--F- 340 (598)
T ss_pred HHHhCcccCCHHhhc----------CCcccCCCCccccHHHHHHHHHHHHHhh-CHHHHHH-----------HHHH--H-
Confidence 567788999999961 2223445567778777777777766655 4443321 1110 1
Q ss_pred CCCCcccceeeecccCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhh
Q psy4038 84 EKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSM 163 (371)
Q Consensus 84 ~~~~~lG~~ylDl~~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~l 163 (371)
+++ |+|+++|+||++||||.+...+ .+| +|++||+. +.+||.||+||+||++|+.
T Consensus 341 ~~~------WiD~~~~~gKrsGaYs~~~~~~--------~~p--~IlmN~~g---------t~~dV~TLaHElGHs~Hs~ 395 (598)
T COG1164 341 DER------WIDVYPRKGKRSGAYSIGFYKG--------DHP--FILMNYDG---------TLRDVFTLAHELGHSVHSY 395 (598)
T ss_pred hcC------CeeccCCCCCCCCcccCCCCCC--------CCC--eEEEeCCC---------chhHHHHHHHHccHHHHHH
Confidence 124 9999999999999999986542 567 66899996 9999999999999999999
Q ss_pred hhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHH-HHHHHHHHHHH
Q psy4038 164 LARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASE-MQAQVFYSALD 242 (371)
Q Consensus 164 ls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~-~~~ql~~a~~D 242 (371)
+++...+.+. ...++.+||+||+++|.+++++.. . .+++ +++.+ .++ .+.+...+. +.||++++.|+
T Consensus 396 ~s~~~qp~~~-~~~~i~~AEiAS~fnE~l~~~~ll-~----~~~~----~~~~~-~il-~~~l~~~~~t~~rq~~f~~FE 463 (598)
T COG1164 396 FSRKHQPYLY-ADYSIFLAEIASTFNEMLLFDYLL-E----RFKD----PEERL-AIL-EEKLEGFFATLFRQTLFAEFE 463 (598)
T ss_pred HHhccCCccc-cCCchHHHHHHHHHHHHHHHHHHH-H----HcCC----HHHHH-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9987555333 357899999999999999999864 2 2332 12222 222 234444444 56999999999
Q ss_pred HHhccCCC-------CCHHHHHHHHHHHhcCCCC--CC--CCccccccccccccCccchhHHHHHHHHHHHHHHHHhhCC
Q psy4038 243 LEYHSSEV-------TNTFQQLKECQNTYYGIPY--IE--HTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDP 311 (371)
Q Consensus 243 ~~lH~~~~-------~~~~~l~~~l~~~~~g~~~--~~--~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~~~ 311 (371)
+.+|...+ ..++++|.++.++|+|... .+ +..|+ +++|++.-++|+|.|..|.+.|..++..+.++++
T Consensus 464 ~~~h~~~~~~~~lt~~~l~~~~~~l~~~y~gd~~~~d~~~~~~W~-~ipHfy~~pFYvy~Ya~G~~~a~~l~~~~~~~~~ 542 (598)
T COG1164 464 HRVHELIEEGEELTAEELNELYLELQKEYYGDAVKLDELSGLEWA-RIPHFYHSPFYVYQYATGQLAALALYAKILTNDA 542 (598)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCccccCcccccchh-hcCeeeecCceehHhHHHHHHHHHHHHHHHhccH
Confidence 99999732 4689999999999998642 22 46788 8999986699999999999999999999988664
Q ss_pred CChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHHHHHh
Q psy4038 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQELD 359 (371)
Q Consensus 312 ~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~~~l~ 359 (371)
++-++|..++|+.|||.+|.|+++ -+|-|++..++++...+.++
T Consensus 543 ---~~~~~~y~~~Lk~GgS~~p~ell~-~~GiD~~~~~~~~~a~~~~~ 586 (598)
T COG1164 543 ---EAFEKYYIAFLKSGGSKSPLELLK-IAGIDLTTPDPWEEALAEFE 586 (598)
T ss_pred ---HHHHHHHHHHHhCCCCCCHHHHHH-HcCCCCCCchHHHHHHHHHH
Confidence 555555479999999999999999 77999988888887777664
No 16
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=99.89 E-value=3.1e-21 Score=189.93 Aligned_cols=222 Identities=15% Similarity=0.121 Sum_probs=157.2
Q ss_pred EEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhh-hhccCCCcccCccccchhhccchHHHHHhhcCH-----HHHH
Q psy4038 127 VVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSM-LARTDYQHVTGTRCATDFAEVPSVLMEFFASDP-----RVIK 200 (371)
Q Consensus 127 ~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~l-ls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~-----~~L~ 200 (371)
+.|.+|+.+.. -.++|.|+.||+|||+|.. ++..-.....|...++-++|.+|.|+|+.+.+. ..+.
T Consensus 145 vRItt~y~~~d-------~~~~l~t~iHE~GHalye~~l~~~~~~~pl~~~~sm~ihESqS~f~E~~vgrs~~F~~~l~~ 217 (396)
T cd06460 145 VRITTRYDEND-------FRSALFSTIHETGHALYEQGLPPELRGTPLGGGASMGIHESQSRLWENQVGRSRAFWEFLYP 217 (396)
T ss_pred ceEEeeeCCcc-------hHHHHHHHHHHhhHHHHHhcCCHhHccCCcccCCCchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 36789998511 2788999999999999999 642111112233468999999999999998662 2333
Q ss_pred HHhhhccCC-CCCcHHHHHHHHHh-h-hHh-----hHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHhcCCCCC
Q psy4038 201 SFAKHYIGG-QPMPEEMLQSFCLS-K-KLF-----QASEMQAQVFYSALDLEYHSSEV--TNTFQQLKECQNTYYGIPYI 270 (371)
Q Consensus 201 ~~~~h~~t~-~~lp~~l~~~l~~~-~-~~~-----~~~~~~~ql~~a~~D~~lH~~~~--~~~~~l~~~l~~~~~g~~~~ 270 (371)
.+..++... +....+.+-.+++. + .+. -....+++++...|+..+.+..- .++.++|++..++|+|+...
T Consensus 218 ~l~~~f~~~~~~~~~e~~~~~~n~v~ps~iRveADEvty~lHiilR~e~Ek~l~~G~l~v~dLp~~W~~~~~eylG~~~~ 297 (396)
T cd06460 218 KLKKTFPEQLKDVSLENFYRAVNRVQPSLIRVEADEVTYNLHIMLRYELEKALIEGDLEVADLPEAWNEKMKEYLGIRPP 297 (396)
T ss_pred HHHHHcccccccCCHHHHHHHHhhcCccceeeecchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 444444221 12222223222211 1 111 00246688999999998887632 67899999999999997654
Q ss_pred CC-Ccccccccccc-ccCccchhHHHHHHHHHHHHHHHHhhCC-CChH--------HHHHHHHHHhcCCCCccHHHHHHH
Q psy4038 271 EH-TAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP-FSRD--------SGDAYRLNCLSHGGGKPASKLVSD 339 (371)
Q Consensus 271 ~~-~~w~~~f~Hl~-~Y~a~YYsYl~s~v~A~~i~~~~~~~~~-~~~~--------~g~~yr~~iL~~Ggs~~~~ell~~ 339 (371)
.+ ..|. +..|.+ |.-+|+|+|..|.++|+++|+...++.+ +... ....+|++|++.|++.+|.|++++
T Consensus 298 ~d~~g~l-Qd~HW~~g~fGYfptYalG~l~Aaql~~~~~~~~~~~~~~i~~g~f~~~~~wL~e~i~~~G~~~~p~eLl~~ 376 (396)
T cd06460 298 NDAEGCL-QDIHWSGGSFGYFPTYTLGNLYAAQLFAAAKKDLPDIDEQIERGDFSPLLEWLRENIHQHGSRYSPDELLKK 376 (396)
T ss_pred CCccccc-cccccccCcCCcCchhHHHHHHHHHHHHHHHHhCccHHHHHhccChHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 33 4454 788886 4445899999999999999998877643 2222 668888899999999999999999
Q ss_pred HhCCCCChHHHHHHHHH
Q psy4038 340 FLQKDITAESLTNSLMQ 356 (371)
Q Consensus 340 ~lGr~p~~~a~~~~~~~ 356 (371)
+.|.++++++|++.|.+
T Consensus 377 atG~~l~~~~f~~yL~~ 393 (396)
T cd06460 377 ATGEPLNPEYFLEYLEE 393 (396)
T ss_pred HhCCCCChHHHHHHHHH
Confidence 99999999999988865
No 17
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=99.74 E-value=1.6e-16 Score=160.60 Aligned_cols=230 Identities=15% Similarity=0.160 Sum_probs=157.8
Q ss_pred ccCCCCCCCCcccc----cCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhh-hccCCCc
Q psy4038 97 FERQKKPNQDCHFT----IRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSML-ARTDYQH 171 (371)
Q Consensus 97 ~~R~gK~~ga~~~~----l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~ll-s~~~~~~ 171 (371)
.+||||+ |++|.+ +... ..| +|.+|+.. +..|+.|+.||+||+...+. .+.++..
T Consensus 212 ~~rp~k~-~~~C~~sawd~~~~--------~d~--rI~~c~~~---------t~~D~~t~~HE~GH~~yy~~y~~~p~~~ 271 (477)
T cd06461 212 LEKPTDR-EVVCHASAWDFYNG--------KDF--RIKMCTKV---------NMEDFVTVHHEMGHIQYYLQYKDQPVLF 271 (477)
T ss_pred ccCCCCC-CCccCcccccCCCC--------CCc--ceeeCCCC---------CHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 9999999 777776 5421 344 66788884 99999999999999994433 3344444
Q ss_pred ccCccccc--hhhccchHHH---HHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhc
Q psy4038 172 VTGTRCAT--DFAEVPSVLM---EFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYH 246 (371)
Q Consensus 172 ~sg~~~~~--D~aE~pS~~~---E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~~ql~~a~~D~~lH 246 (371)
..|.+.+. .++|+.|+.| |++..-+. +.. +..+ .++.++.+. +++.+.+.++ .+..++|+.-|
T Consensus 272 r~~anp~fheav~e~~smS~~tpe~L~~~~l-l~~----~~~~---~~~~i~~l~--~~al~~i~fL--P~~~~vD~fr~ 339 (477)
T cd06461 272 REGANPGFHEAVGDAIALSVSTPKHLHKIGL-LDS----EVDD---EEADINFLL--KMALDKIAFL--PFGYLLDKWRW 339 (477)
T ss_pred hCCCCCChHHHHHHHHHHhcCCHHHHhhccc-ccc----cCCC---cHHHHHHHH--HHHHHHHHHh--hHHHHHHHHHH
Confidence 45666777 9999999999 98885332 211 1111 112223222 3344444444 88889999976
Q ss_pred cCC-----CCCHHHHHHHHHHHhcCCCC-CC---CCccccccccccccCccchhHHHHHHHHHHHHHHHHhh----CCC-
Q psy4038 247 SSE-----VTNTFQQLKECQNTYYGIPY-IE---HTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEK----DPF- 312 (371)
Q Consensus 247 ~~~-----~~~~~~l~~~l~~~~~g~~~-~~---~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~----~~~- 312 (371)
... +.+.++.|.+|.++|.|+.. ++ .......+-|+.. ...|..|..|++++.++|+.+-+. +|+
T Consensus 340 ~vy~~~~~~~e~n~~WweL~~~yqgv~pP~~r~~~~fd~gak~h~~~-~~PYi~YflA~ilqfQf~~~lc~~a~~~~plh 418 (477)
T cd06461 340 DVFDGEIPKDDYNKAWWELREKYQGVVPPVPRSEEDFDPGAKYHVPA-NTPYIRYFLSFILQFQFHKALCKAAGHTGPLH 418 (477)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccccCccceeeccC-CCcHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 643 25789999999999988622 11 1111223445543 334999999999999999885322 343
Q ss_pred ------ChHHHHHHHHHHhcCCCCccHHHHHHHHhCC-CCChHHHHH---HHHHHHhh
Q psy4038 313 ------SRDSGDAYRLNCLSHGGGKPASKLVSDFLQK-DITAESLTN---SLMQELDK 360 (371)
Q Consensus 313 ------~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr-~p~~~a~~~---~~~~~l~~ 360 (371)
+++||++| +++|+.|+|++..|+++.+.|. +++..++++ .+.+.|+.
T Consensus 419 ~C~~~~s~~Ag~~l-~~~l~lG~S~~w~e~le~~~g~~~~s~~~l~eyf~pl~~wL~~ 475 (477)
T cd06461 419 KCDIYGSKEAGKKL-RAMLSLGSSKPWPEALEALTGEREMDASALLEYFQPLIDWLKE 475 (477)
T ss_pred cccccChHHHHHHH-HHHHhCcCCCCHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Confidence 46899999 5999999999999999999554 678877777 77767653
No 18
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=99.38 E-value=7.8e-11 Score=119.51 Aligned_cols=223 Identities=15% Similarity=0.140 Sum_probs=136.3
Q ss_pred EEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhccCCCc-ccCccccchhhccchHHHHHhhcC-HHHHHH---
Q psy4038 127 VVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQH-VTGTRCATDFAEVPSVLMEFFASD-PRVIKS--- 201 (371)
Q Consensus 127 ~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~~~~~~-~sg~~~~~D~aE~pS~~~E~~~~~-~~~L~~--- 201 (371)
+.|.+.+.+.. =.+.+....||.||||...-....+.. ..|..+++-+-|-.|.|+||.+.. ......
T Consensus 245 vRiTTry~e~d-------~~~~l~s~iHE~GHalYEq~~~~~~~~tpl~~~~smgiHESQSrf~En~vgrS~~Fw~~~~p 317 (494)
T PF02074_consen 245 VRITTRYDEDD-------FLSALFSTIHETGHALYEQGLPPEYYGTPLGEGVSMGIHESQSRFWENMVGRSRAFWEFLYP 317 (494)
T ss_dssp EEEEE--BTTB-------THHHHHHHHHHHHHHHHHHTS-GGGTTSTTSS-S-HHHHHHHHHHHHTTTTTSHHHHHHHHH
T ss_pred eeeeccccccc-------HHHHHHHHHHHHHHHHHHcCCChhHccCccccccccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 35556665411 234677888999999998876554332 223346788999999999997643 333222
Q ss_pred -HhhhccCCCCCcHH-HHHHHHHhhh-Hhh-----HHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHhcCCCCCC
Q psy4038 202 -FAKHYIGGQPMPEE-MLQSFCLSKK-LFQ-----ASEMQAQVFYSALDLEYHSSE--VTNTFQQLKECQNTYYGIPYIE 271 (371)
Q Consensus 202 -~~~h~~t~~~lp~~-l~~~l~~~~~-~~~-----~~~~~~ql~~a~~D~~lH~~~--~~~~~~l~~~l~~~~~g~~~~~ 271 (371)
+-.++.....++.+ +...+.+.+. +.+ ....+.-++.-.+++.+-+.. ..|+.++|++..++|.|+.+..
T Consensus 318 ~l~~~f~~~~~v~~e~~y~~~N~V~ps~IR~eADElTY~lHIilRyEiEk~li~g~l~v~dLP~~Wn~km~eyLGi~p~~ 397 (494)
T PF02074_consen 318 KLQEHFPQLKDVSLENFYRAINRVKPSLIRVEADELTYPLHIILRYEIEKALINGELSVDDLPEAWNEKMEEYLGITPPN 397 (494)
T ss_dssp HHHHHCGGGTT-SHHHHHHHHT-----S-GGG--TTTHHHHHHHHHHHHHHHHTTSS-GGGHHHHHHHHHHHHHS---SS
T ss_pred HHHHHhCcccCCCHHHHHHHHccCCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHcCCCCCC
Confidence 22334322334433 3322211110 100 011334455556666666643 3789999999999999985443
Q ss_pred CCcccccccccc-ccCccchhHHHHHHHHHHHHHHHHhhCC-CC--------hHHHHHHHHHHhcCCCCccHHHHHHHHh
Q psy4038 272 HTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP-FS--------RDSGDAYRLNCLSHGGGKPASKLVSDFL 341 (371)
Q Consensus 272 ~~~w~~~f~Hl~-~Y~a~YYsYl~s~v~A~~i~~~~~~~~~-~~--------~~~g~~yr~~iL~~Ggs~~~~ell~~~l 341 (371)
+.....+--|.. |.=+||=+|..|.++|+++|+...++-| ++ ......+|++|-+.|+..+|.|+++++.
T Consensus 398 d~eG~LQDvHWs~G~fGYFPtY~LG~~~AaQl~~~~~~~~pd~~~~i~~G~f~~i~~WL~e~Ih~~G~~y~~~eLl~~aT 477 (494)
T PF02074_consen 398 DAEGVLQDVHWSSGSFGYFPTYALGNIYAAQLFAAMKKDIPDLDEQIAKGDFSPIRDWLRENIHQYGSRYTPDELLKKAT 477 (494)
T ss_dssp CTTTTTS-STTTTT-TS-THHHHHHHHHHHHHHHHHHHHHTTHHHHHHTT--HHHHHHHHHHTGGGTTSS-HHHHHHHHH
T ss_pred CCccccccccccCCccccchhhHHHHHHHHHHHHHHHHHccCHHHHHHcCChHHHHHHHHHHHHHhccCCCHHHHHHHHh
Confidence 333333556665 4555788999999999999998754332 11 3678889999999999999999999999
Q ss_pred CCCCChHHHHHHHHH
Q psy4038 342 QKDITAESLTNSLMQ 356 (371)
Q Consensus 342 Gr~p~~~a~~~~~~~ 356 (371)
|.+++++.|++.|.+
T Consensus 478 Ge~l~~~~~~~YL~~ 492 (494)
T PF02074_consen 478 GEPLNPEYFIDYLKE 492 (494)
T ss_dssp SSS--THHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988754
No 19
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=99.09 E-value=5.4e-09 Score=103.02 Aligned_cols=241 Identities=14% Similarity=0.098 Sum_probs=145.4
Q ss_pred cCCCCCCCCcccccCCceecCCCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhccCCC-cccCcc
Q psy4038 98 ERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQ-HVTGTR 176 (371)
Q Consensus 98 ~R~gK~~ga~~~~l~~~~~~~~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~~~~~-~~sg~~ 176 (371)
-|-.-..|.+|.++.++ | |.|.+.+.... =.+.+....||+|||+...-....+. ..-|+.
T Consensus 227 GRlD~S~HPF~~g~~~~----D-------VRITTRy~~~d-------f~~aL~g~iHE~GHAlYEqn~~~~l~gtPlg~g 288 (497)
T COG2317 227 GRLDVSVHPFTTGLPIN----D-------VRITTRYNEQD-------FRSALFGTIHETGHALYEQNLDEALLGTPLGEG 288 (497)
T ss_pred ccccCCCCCccCCCCCC----c-------eeEEeecCCcc-------HHHHHHHHHHhhhhHHHHcCCCHHHcCCcccCC
Confidence 34445678888877642 1 45666666411 22457778999999998765543221 122344
Q ss_pred ccchhhccchHHHHHhhcC-HHHHHHHhh----hccC-CCCCcHHHHHHHHH-hh-hHhhH----H-HHHHHHHHHHHHH
Q psy4038 177 CATDFAEVPSVLMEFFASD-PRVIKSFAK----HYIG-GQPMPEEMLQSFCL-SK-KLFQA----S-EMQAQVFYSALDL 243 (371)
Q Consensus 177 ~~~D~aE~pS~~~E~~~~~-~~~L~~~~~----h~~t-~~~lp~~l~~~l~~-~~-~~~~~----~-~~~~ql~~a~~D~ 243 (371)
.++-+-|-.|-|+|+.+-. +...+.+.. |+.. -+..+.+-+-..++ .+ .+.+. + ..+.-+..=.++.
T Consensus 289 ~smgiHESQSrF~En~VGRs~aFw~~~~~~~~~~~~~~~~~~s~dd~y~~vn~v~~~lIRveADElTY~lHIilRyEiEk 368 (497)
T COG2317 289 RSMGIHESQSRFWENQVGRSRAFWEAIYPLLRKHFPEQFDKYSLDDFYRAVNRVEPSLIRVEADELTYPLHIILRYEIEK 368 (497)
T ss_pred cccccccHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHhcccCcceeeeccccceeeeeehhHHHHH
Confidence 6788999999999999843 444433321 2210 01122222111110 00 00000 0 0011122222233
Q ss_pred HhccCC--CCCHHHHHHHHHHHhcCCCCCCCCcccccccccc-ccCccchhHHHHHHHHHHHHHHHHhhCC-CC------
Q psy4038 244 EYHSSE--VTNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP-FS------ 313 (371)
Q Consensus 244 ~lH~~~--~~~~~~l~~~l~~~~~g~~~~~~~~w~~~f~Hl~-~Y~a~YYsYl~s~v~A~~i~~~~~~~~~-~~------ 313 (371)
.+-+.. ..|+.++|++..++|.|+.+..+.....+--|.. |-=+||=+|..+.++|+++|....++-| ++
T Consensus 369 ~li~G~l~v~DlP~lWn~kme~yLGirp~~d~eG~LQDIHWs~GsfGYFPsYtlG~v~AAQ~~~a~~~~~p~~d~~i~~g 448 (497)
T COG2317 369 ELISGELKVDDLPELWNDKMEEYLGIRPKNDAEGVLQDIHWSHGSFGYFPTYTLGNVYAAQLYAAMKKDIPDVDALIAKG 448 (497)
T ss_pred HHHcCCcchhhhHHHHHHHHHHHcCCCCCCccccccccccccCCCcCcCchhhhHHHHHHHHHHHHHhhcccHHHHHHcC
Confidence 333322 1578899999999999986543222222344544 2223567899999999999988755322 11
Q ss_pred --hHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCChHHHHHHHHH
Q psy4038 314 --RDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESLTNSLMQ 356 (371)
Q Consensus 314 --~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~~a~~~~~~~ 356 (371)
......+|++|-+.|...+|.|++++..|.+.+++.|++.|.+
T Consensus 449 d~~~i~~WL~e~ih~~Gs~~~p~eLi~~atGE~lnp~y~i~yL~e 493 (497)
T COG2317 449 DFSPIKNWLRENIHRHGSRYPPKELLKRATGEALNPEYFIDYLEE 493 (497)
T ss_pred CcHHHHHHHHHHHHHccCcCCcHHHHHHhhCCcCCHHHHHHHHHH
Confidence 3677889999999999999999999999999999999888765
No 20
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=98.69 E-value=1.1e-06 Score=91.69 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=138.0
Q ss_pred cCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHH
Q psy4038 123 QNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSF 202 (371)
Q Consensus 123 ~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~ 202 (371)
.+|.+.-+||-..=.-..++-.+.+++.|+.||+||..+.+.-+. .+.+.....---|-|.-+.++-.-+..|.-|.++
T Consensus 324 Chasawdf~~~~d~Rik~Ct~v~~~df~t~hhemghi~Y~~~y~~-qp~~fr~gan~gfhEAigd~ials~~tp~hL~~~ 402 (595)
T PF01401_consen 324 CHASAWDFYNGDDFRIKMCTEVTMEDFLTAHHEMGHIQYYMQYKD-QPVLFREGANPGFHEAIGDTIALSVSTPKHLKRI 402 (595)
T ss_dssp -S-EEEEESSSSEEEEE----SSHHHHHHHHHHHHHHHHHHHTTT-S-GGGSS-SSHHHHHHHHHHHHHHHTSHHHHHHT
T ss_pred cCcchhhccCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhh-CChhhhcCCCchHHHHHHHHHHHHcCCHHHHHHc
Confidence 455554444421101123445799999999999999999876543 2322222234678888899998889899888776
Q ss_pred hhhccCCCCCcHHHHHHHHHhhhHhhHHHHH-HHHHHHHHHHHh---ccC--CCCCHHHHHHHHHHHhcCCC-CCCC--C
Q psy4038 203 AKHYIGGQPMPEEMLQSFCLSKKLFQASEMQ-AQVFYSALDLEY---HSS--EVTNTFQQLKECQNTYYGIP-YIEH--T 273 (371)
Q Consensus 203 ~~h~~t~~~lp~~l~~~l~~~~~~~~~~~~~-~ql~~a~~D~~l---H~~--~~~~~~~l~~~l~~~~~g~~-~~~~--~ 273 (371)
.-- .+...=++..++.|+ ..++..+ ...+.-+.|+.= .+. .+.+.++-|.+++.+|.|+. +++. .
T Consensus 403 gLl-~~~~~~~~~~in~L~-----~~AL~ki~~lPf~~~~d~wRw~vf~g~i~~~~~n~~wW~lr~~yqGi~pP~~r~~~ 476 (595)
T PF01401_consen 403 GLL-DNVTDDEESDINFLL-----KQALDKIAFLPFGYLMDKWRWDVFSGSIPPDQYNEAWWELREKYQGIVPPVERSES 476 (595)
T ss_dssp TSS-STTTTSHHHHHHHHH-----HHHHHHCCHHHHHHHHHHHHHHHHTTSS-CCGHHHHHHHHHHHHHSEE-SS-EETT
T ss_pred CCC-CCCCcchHHHHHHHH-----HHhhhHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCCCcc
Confidence 432 111111334444443 2333322 224445566553 332 23679999999999999973 3321 2
Q ss_pred cc-ccccccccccCccchhHHHHHHHHHHHHHHHHhh----CCC-------ChHHHHHHHHHHhcCCCCccHHHHHHHHh
Q psy4038 274 AW-QHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEK----DPF-------SRDSGDAYRLNCLSHGGGKPASKLVSDFL 341 (371)
Q Consensus 274 ~w-~~~f~Hl~~Y~a~YYsYl~s~v~A~~i~~~~~~~----~~~-------~~~~g~~yr~~iL~~Ggs~~~~ell~~~l 341 (371)
.+ +....|+.. ...|..|-.|.++--++++..-+. ||+ ++++|+++ +++|+.|+|++..++++.+.
T Consensus 477 ~fD~~ak~hi~~-~~py~ryfls~ilqFQ~~~~lC~~ag~~~pLh~Cdiy~s~~aG~~l-~~ml~~G~S~~W~~~l~~~t 554 (595)
T PF01401_consen 477 DFDPGAKYHIPA-NTPYIRYFLSTILQFQFYKALCEAAGHEGPLHRCDIYGSKEAGRKL-KKMLSLGSSKPWPEALEELT 554 (595)
T ss_dssp S-GGGGSHHHHT-T--SHHHHHHHHHHHHHHHHHHHHTTTTSSGGG---TT-HHHHHHH-HHHHTTTTSS-HHHHHHHHH
T ss_pred cCCcchhhhhcc-ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHH-HHHhcCCCCCCHHHHHHHHh
Confidence 22 224567653 456899999999999999876543 342 47999999 58999999999999999999
Q ss_pred CC-CCChHHHHHHHH
Q psy4038 342 QK-DITAESLTNSLM 355 (371)
Q Consensus 342 Gr-~p~~~a~~~~~~ 355 (371)
|. +.+.+++++.+.
T Consensus 555 g~~~~~a~~ll~YF~ 569 (595)
T PF01401_consen 555 GEREMSASALLEYFQ 569 (595)
T ss_dssp SSSS--SHHHHHHHH
T ss_pred CCCCcChHHHHHHHH
Confidence 95 688888776553
No 21
>KOG3690|consensus
Probab=98.11 E-value=0.00028 Score=71.90 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=135.0
Q ss_pred CCcCChhhHHHHHhhHHHHHhhhhhccCCCcccCccccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCc-HHHHHH
Q psy4038 141 PCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMP-EEMLQS 219 (371)
Q Consensus 141 p~ll~~~~v~tLfHE~GHalH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp-~~l~~~ 219 (371)
.+.++..+..+..||+||.-..+.-+. .+.+-.....--|-|...-.+=.-+..|.-|.++.-- ....... +..+++
T Consensus 364 Ct~vd~~~f~~~Hhem~hiQY~l~y~~-qP~llre~anPgFheAIgd~~als~stPrhL~slgLL-~~~~~~d~~~~IN~ 441 (646)
T KOG3690|consen 364 CTKVDEEDFEQAHHEMGHIQYYLQYKQ-QPFLLREGANPGFHEAIGDAFALSVSTPRHLHSLGLL-SEDLDEDDEVRINR 441 (646)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHh-ccHHhhCCCCCcHHHHHHHHHHHhcCCHHHHHHhccc-ccccccchHHHHHH
Confidence 556799999999999999877776654 3333222334566777777787888888888765321 1111112 334555
Q ss_pred HHHhhhHhhHHHHH-HHHHHHHHHHHhccC----CC-CCHHHHHHHHHHHhcCCC-CCCCC----ccccccccccccCcc
Q psy4038 220 FCLSKKLFQASEMQ-AQVFYSALDLEYHSS----EV-TNTFQQLKECQNTYYGIP-YIEHT----AWQHRFSHLVGYGAK 288 (371)
Q Consensus 220 l~~~~~~~~~~~~~-~ql~~a~~D~~lH~~----~~-~~~~~l~~~l~~~~~g~~-~~~~~----~w~~~f~Hl~~Y~a~ 288 (371)
|. ..++..+ ...+.=..|..-... .+ .+.+.-|.+|+.+|.|+. +++.+ ... ..-| +.-.-.
T Consensus 442 L~-----k~aL~~v~~LPf~y~~DkwR~~Vf~G~i~k~~~N~~~W~lr~ky~Gv~~P~~r~~~dfD~~-akf~-~~~d~~ 514 (646)
T KOG3690|consen 442 LF-----KMALDKVAFLPFTYALDKWRYEVFDGEIPKDQYNCAYWELRNKYEGVRPPVPRTNKDFDPP-AKFH-IQVDVS 514 (646)
T ss_pred HH-----HHHHHHHhhhhhhhhhhhhHHHHhcCCCCcchhhHHHHHHHHHhcCcCCCCcCccccCCch-hhhc-cCcchH
Confidence 43 2233321 225555566654432 23 458999999999999863 33321 112 2234 334456
Q ss_pred chhHHHHHHHHHHHHHHHH-hhC---C-------------CChHHHHHHHHHHhcCCCCccHHHHHHHHhCCC-CChHHH
Q psy4038 289 YYSYLLSRAVASWIWQSYF-EKD---P-------------FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKD-ITAESL 350 (371)
Q Consensus 289 YYsYl~s~v~A~~i~~~~~-~~~---~-------------~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~-p~~~a~ 350 (371)
|-.|..|.|+--++.+.+- +.| | .++++|+++ +++++.|.|++..|+++.++|.. .+.+++
T Consensus 515 ~~ryf~s~vlqFQf~kalC~~agq~~pg~pr~pLh~CDi~~sk~aG~kL-~~~M~lG~S~~W~evLE~~tGe~els~~~L 593 (646)
T KOG3690|consen 515 YTRYFLSTVLQFQFLKALCQAAGQYGPGDPRKPLHNCDIYDSKEAGEKL-RTMMSLGSSRHWREVLEEITGEGELSGRAL 593 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchhccccCCHHHHHHH-HHHHHccCCccHHHHHHHHcCCCcCChHHH
Confidence 8889999999999987753 222 1 247999999 58999999999999999999987 788887
Q ss_pred HHHHHH
Q psy4038 351 TNSLMQ 356 (371)
Q Consensus 351 ~~~~~~ 356 (371)
++.+..
T Consensus 594 LeYFeP 599 (646)
T KOG3690|consen 594 LEYFEP 599 (646)
T ss_pred HHHHHH
Confidence 766543
No 22
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=94.99 E-value=0.15 Score=45.32 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEE
Q psy4038 44 TCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLA 80 (371)
Q Consensus 44 ~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~ 80 (371)
..++..+...+++-+|+|++++.. ...|+++..
T Consensus 37 ~~i~~A~~~w~~~~~l~F~e~~~~----~~adI~i~~ 69 (186)
T cd04277 37 AAARDALEAWEDVADIDFVEVSDN----SGADIRFGN 69 (186)
T ss_pred HHHHHHHHHHHhhcCceeEECCCC----CcceEEEEe
Confidence 344555666678889999998642 456776654
No 23
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=92.89 E-value=0.092 Score=48.02 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred cCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhh
Q psy4038 123 QNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSML 164 (371)
Q Consensus 123 ~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~ll 164 (371)
+.|++++..|-+ ......||+||+||++-+--
T Consensus 57 ~~~~I~iN~n~~----------~~r~rFtlAHELGH~llH~~ 88 (213)
T COG2856 57 EKPVIYINANNS----------LERKRFTLAHELGHALLHTD 88 (213)
T ss_pred cCceEEEeCCCC----------HHHHHHHHHHHHhHHHhccc
Confidence 458888877764 45688999999999975443
No 24
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=92.72 E-value=0.89 Score=39.20 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhHhccEEEEEc
Q psy4038 44 TCMEGLNNLFNKIYGITLQHVE 65 (371)
Q Consensus 44 ~vl~gl~~l~~~lfgi~f~~~~ 65 (371)
.+++.-+...+.+.+|+|++++
T Consensus 25 ~~i~~A~~~W~~~~~l~F~e~~ 46 (157)
T cd04278 25 RAIARAFRVWSDVTPLTFREVT 46 (157)
T ss_pred HHHHHHHHHHHhhcCceeEEcc
Confidence 4455555666777899999875
No 25
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=90.47 E-value=1.7 Score=37.47 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHhHhccEEEEEcC
Q psy4038 42 LGTCMEGLNNLFNKIYGITLQHVEA 66 (371)
Q Consensus 42 l~~vl~gl~~l~~~lfgi~f~~~~~ 66 (371)
+..++...+.+.+...+|+|+++..
T Consensus 23 ~~~~v~~a~~~w~~~~~i~f~~~~~ 47 (167)
T cd00203 23 IQSLILIAMQIWRDYLNIRFVLVGV 47 (167)
T ss_pred HHHHHHHHHHHHHhhhCceEEEecc
Confidence 4455666777778878999998854
No 26
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=90.05 E-value=1.1 Score=37.61 Aligned_cols=23 Identities=0% Similarity=-0.010 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhHhccEEEEEc
Q psy4038 43 GTCMEGLNNLFNKIYGITLQHVE 65 (371)
Q Consensus 43 ~~vl~gl~~l~~~lfgi~f~~~~ 65 (371)
..++..-+...++.-+|+|+++.
T Consensus 25 ~~~i~~A~~~w~~~t~i~F~e~~ 47 (140)
T smart00235 25 REAIARAFAEWSDVTCLRFVERT 47 (140)
T ss_pred HHHHHHHHHHHhcCCeeEEEECC
Confidence 44555455555677799998764
No 27
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=88.91 E-value=0.44 Score=38.24 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhc
Q psy4038 124 NPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLAR 166 (371)
Q Consensus 124 ~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~ 166 (371)
.+++++-.|.+ ......|++||+||.+.+.-..
T Consensus 28 ~~~I~in~~~~----------~~~~~f~laHELgH~~~~~~~~ 60 (122)
T PF06114_consen 28 NPIIFINSNLS----------PERQRFTLAHELGHILLHHGDE 60 (122)
T ss_dssp TTEEEEESSS-----------HHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCEEEECCCCC----------HHHHHHHHHHHHHHHHhhhccc
Confidence 46666655533 5567899999999999876653
No 28
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=86.66 E-value=0.34 Score=41.30 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHhHhccEEEEEcC
Q psy4038 43 GTCMEGLNNLFNKIYGITLQHVEA 66 (371)
Q Consensus 43 ~~vl~gl~~l~~~lfgi~f~~~~~ 66 (371)
..++..-+..-+...+++|++++.
T Consensus 24 ~~~i~~A~~~W~~~~~~~F~~~~~ 47 (154)
T PF00413_consen 24 RDAIRQAFQAWNDVAPLNFTEVSD 47 (154)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCceEEeccC
Confidence 345556666777788999999863
No 29
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=86.38 E-value=0.45 Score=43.77 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=16.0
Q ss_pred hHHHHHhhHHHHHhhhhh
Q psy4038 148 MVDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 148 ~v~tLfHE~GHalH~lls 165 (371)
-+.||+||+|||+-..+.
T Consensus 92 ~~~~l~HE~GHAlI~~~~ 109 (220)
T PF14247_consen 92 VLFTLYHELGHALIDDLD 109 (220)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 578999999999998885
No 30
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=84.34 E-value=0.95 Score=41.16 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHhHhccEEEEEc
Q psy4038 42 LGTCMEGLNNLFNKIYGITLQHVE 65 (371)
Q Consensus 42 l~~vl~gl~~l~~~lfgi~f~~~~ 65 (371)
+..++..+..++.+=.||+|+.+.
T Consensus 31 i~~~v~~~N~~Y~s~v~i~~~Lv~ 54 (206)
T PF13583_consen 31 IASMVNFANEAYNSDVGIRFRLVH 54 (206)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 455667777788888899998874
No 31
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=83.98 E-value=2.2 Score=37.99 Aligned_cols=64 Identities=13% Similarity=0.260 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHh---ccEEEEEcCCCCCCCCcceeEEEEE-----------eCCCCcccceeeecccCCCCCCCCccc
Q psy4038 44 TCMEGLNNLFNKIY---GITLQHVEANNGELWSSDVYKLAVT-----------HEKEGLLGYIYCDFFERQKKPNQDCHF 109 (371)
Q Consensus 44 ~vl~gl~~l~~~lf---gi~f~~~~~~~~~~W~~dV~~~~v~-----------~~~~~~lG~~ylDl~~R~gK~~ga~~~ 109 (371)
.++..+..-+.++| |+......+.|...++++=.=|..- .+....+|....|+|++ |. .|++
T Consensus 15 ~~l~~~~~~l~~~~~~~~v~~~~~~~~p~~a~~~~r~Q~~a~~iL~~l~~~~~~~~~~vl~vt~~DLy~~-~~---nfvf 90 (179)
T PRK13267 15 SVIREASNNLRSVYLDCDVTVDSRQSLPISAYDWERGQYRAEKFLPLLSRIGRFNGDKNIGITDCDLYYR-GL---NFVF 90 (179)
T ss_pred HHHHHHHHHHHHHhccCCeEEecCCCCCHhhcCCCCceecHHHHHHHHHhhCCCCCceEEEEEccccCCC-CC---Ccee
Confidence 34455555666666 4444433333434444333222211 01246889999999993 32 3555
Q ss_pred cc
Q psy4038 110 TI 111 (371)
Q Consensus 110 ~l 111 (371)
++
T Consensus 91 G~ 92 (179)
T PRK13267 91 GL 92 (179)
T ss_pred EE
Confidence 44
No 32
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=82.44 E-value=0.72 Score=39.80 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhHhccEEEEEcCCCCCCCCcceeEEEE
Q psy4038 43 GTCMEGLNNLFNKIYGITLQHVEANNGELWSSDVYKLAV 81 (371)
Q Consensus 43 ~~vl~gl~~l~~~lfgi~f~~~~~~~~~~W~~dV~~~~v 81 (371)
..+++.-+...++...|+|+++... -..|+++..+
T Consensus 17 r~~i~~A~~~W~~~~~i~F~e~~~~----~~~di~i~~~ 51 (165)
T cd04268 17 RAAILDAIEAWNKAFAIGFKNANDV----DPADIRYSVI 51 (165)
T ss_pred HHHHHHHHHHHHHHhCcCceecccc----CccCceEEEE
Confidence 3555555556666779999987542 3356766554
No 33
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=82.19 E-value=0.71 Score=39.74 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=12.3
Q ss_pred hhHHHHHhhHHHHHh
Q psy4038 147 AMVDNLFHEMGHAMH 161 (371)
Q Consensus 147 ~~v~tLfHE~GHalH 161 (371)
+-..|+.||+||+|=
T Consensus 103 ~~~~~~~HEiGHaLG 117 (156)
T cd04279 103 NLQAIALHELGHALG 117 (156)
T ss_pred HHHHHHHHHhhhhhc
Confidence 346789999999985
No 34
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=82.12 E-value=4 Score=38.05 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=11.0
Q ss_pred HHHHHhhHHHHHh
Q psy4038 149 VDNLFHEMGHAMH 161 (371)
Q Consensus 149 v~tLfHE~GHalH 161 (371)
..|++||+||.+=
T Consensus 168 a~t~AHElGHnlG 180 (244)
T cd04270 168 DLVTAHELGHNFG 180 (244)
T ss_pred HHHHHHHHHHhcC
Confidence 4789999999873
No 35
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=79.73 E-value=1.2 Score=35.93 Aligned_cols=14 Identities=43% Similarity=0.821 Sum_probs=12.8
Q ss_pred hHHHHHhhHHHHHh
Q psy4038 148 MVDNLFHEMGHAMH 161 (371)
Q Consensus 148 ~v~tLfHE~GHalH 161 (371)
=+.||+|||-|+|+
T Consensus 76 vlktllhefrh~mQ 89 (126)
T PF13058_consen 76 VLKTLLHEFRHAMQ 89 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999999999
No 36
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=79.07 E-value=1.6 Score=39.55 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=19.8
Q ss_pred hhhHHHHHhhHHHHHhhhhhccCC
Q psy4038 146 PAMVDNLFHEMGHAMHSMLARTDY 169 (371)
Q Consensus 146 ~~~v~tLfHE~GHalH~lls~~~~ 169 (371)
+.-+.|++||+||++=.+++-.+.
T Consensus 20 ~~~l~t~~HE~gHal~a~l~G~~v 43 (200)
T PF13398_consen 20 FRLLVTFVHELGHALAALLTGGRV 43 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345789999999999999986654
No 37
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=78.90 E-value=0.99 Score=40.24 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.6
Q ss_pred ChhhHHHHHhhHHHHHh
Q psy4038 145 TPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH 161 (371)
+...+.|++||+||.|=
T Consensus 139 ~~~~~~~~AHEiGH~lG 155 (196)
T PF13688_consen 139 TYNGAITFAHEIGHNLG 155 (196)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CCceehhhHHhHHHhcC
Confidence 56789999999999874
No 38
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=77.88 E-value=1.1 Score=36.63 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=11.2
Q ss_pred hHHHHHhhHHHHH
Q psy4038 148 MVDNLFHEMGHAM 160 (371)
Q Consensus 148 ~v~tLfHE~GHal 160 (371)
.+.|+.||+||.|
T Consensus 107 ~~~~~~HEiGH~l 119 (124)
T PF13582_consen 107 GVDTFAHEIGHNL 119 (124)
T ss_dssp STTHHHHHHHHHT
T ss_pred cceEeeehhhHhc
Confidence 4589999999986
No 39
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=77.09 E-value=1.5 Score=38.71 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=12.5
Q ss_pred hHHHHHhhHHHHHh
Q psy4038 148 MVDNLFHEMGHAMH 161 (371)
Q Consensus 148 ~v~tLfHE~GHalH 161 (371)
++.+++||+||.+=
T Consensus 111 ~~~~~aHElGH~lG 124 (173)
T PF13574_consen 111 GIDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred eeeeehhhhHhhcC
Confidence 88999999999874
No 40
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=76.67 E-value=2 Score=42.52 Aligned_cols=47 Identities=19% Similarity=0.061 Sum_probs=31.3
Q ss_pred hHHHHHhhHHHHHhhhhhccCCCcccCccccchhhccchHHHHHhhcCH
Q psy4038 148 MVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDP 196 (371)
Q Consensus 148 ~v~tLfHE~GHalH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~~~ 196 (371)
-+.||+|||=|.+|..-..-... .+.....-+=|.-|+++|.++...
T Consensus 139 ~~sTlAHEfQHmInfy~~~v~~g--~~~~~dtWLnE~lS~~aEdl~s~~ 185 (366)
T PF10460_consen 139 VYSTLAHEFQHMINFYQRGVLHG--KQYAMDTWLNEMLSMSAEDLYSSK 185 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCcccccHHHHHHHHHHHHHHhcC
Confidence 47899999999999754321111 111245666789999999877543
No 41
>PF14891 Peptidase_M91: Effector protein
Probab=76.45 E-value=1.7 Score=38.38 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.0
Q ss_pred hhhHHHHHhhHHHHHhhhhhcc
Q psy4038 146 PAMVDNLFHEMGHAMHSMLART 167 (371)
Q Consensus 146 ~~~v~tLfHE~GHalH~lls~~ 167 (371)
..-+..|+|||.||.|.+-...
T Consensus 101 ~~p~v~L~HEL~HA~~~~~Gt~ 122 (174)
T PF14891_consen 101 RPPFVVLYHELIHAYDYMNGTM 122 (174)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
Confidence 3457889999999999887654
No 42
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=75.34 E-value=1.5 Score=39.56 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=12.8
Q ss_pred hHHHHHhhHHHHHhhh
Q psy4038 148 MVDNLFHEMGHAMHSM 163 (371)
Q Consensus 148 ~v~tLfHE~GHalH~l 163 (371)
...|+.|||||||=..
T Consensus 92 ~~~~i~HElgHaLG~~ 107 (198)
T cd04327 92 FSRVVLHEFGHALGFI 107 (198)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 4568999999998644
No 43
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=73.20 E-value=3.7 Score=37.90 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=13.6
Q ss_pred ChhhHHHHHhhHHHHHh
Q psy4038 145 TPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH 161 (371)
..+.-.|+.||+||.|-
T Consensus 134 ~~n~g~t~~HEvGH~lG 150 (225)
T cd04275 134 PYNLGDTATHEVGHWLG 150 (225)
T ss_pred cccccceeEEeccceee
Confidence 34556799999999985
No 44
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=70.35 E-value=4.3 Score=32.58 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=23.6
Q ss_pred HHHHhhHHHHHhhhhhccCCCcccCccccchhhccchHHHH
Q psy4038 150 DNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLME 190 (371)
Q Consensus 150 ~tLfHE~GHalH~lls~~~~~~~sg~~~~~D~aE~pS~~~E 190 (371)
.+|.||++|.+|.-.... ....|.-+.|--++.+|
T Consensus 27 ~~l~HE~~H~~~~~~~~~------~~~~~~W~~EG~A~y~~ 61 (128)
T PF13485_consen 27 RVLAHELAHQWFGNYFGG------DDNAPRWFNEGLAEYVE 61 (128)
T ss_pred HHHHHHHHHHHHHHHcCC------CccCchHHHHHHHHHHh
Confidence 889999999999887543 12244555555555555
No 45
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=70.23 E-value=2.9 Score=40.19 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=17.8
Q ss_pred ChhhHHHHHhhHHHHHhhhhh
Q psy4038 145 TPAMVDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH~lls 165 (371)
.+....+|+||+||.++.++.
T Consensus 167 ~~a~ayVlAHEyGHHVQ~l~G 187 (292)
T PF04228_consen 167 DFAQAYVLAHEYGHHVQNLLG 187 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455677899999999999985
No 46
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=69.86 E-value=2.5 Score=36.68 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.1
Q ss_pred ChhhHHHHHhhHHHHHh
Q psy4038 145 TPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH 161 (371)
....-.||.||+||-|-
T Consensus 66 ~~~~g~TltHEvGH~LG 82 (154)
T PF05572_consen 66 QYNFGKTLTHEVGHWLG 82 (154)
T ss_dssp TS-SSHHHHHHHHHHTT
T ss_pred ccccccchhhhhhhhhc
Confidence 34456999999999875
No 47
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=67.26 E-value=3.2 Score=37.95 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.9
Q ss_pred ChhhHHHHHhhHHHHH
Q psy4038 145 TPAMVDNLFHEMGHAM 160 (371)
Q Consensus 145 ~~~~v~tLfHE~GHal 160 (371)
++..+.|++||+||.|
T Consensus 142 ~~~~~~~~AHElGH~l 157 (220)
T cd04272 142 SYYGVYTMTHELAHLL 157 (220)
T ss_pred CcccHHHHHHHHHHHh
Confidence 4567999999999998
No 48
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=65.93 E-value=1.9 Score=39.86 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.0
Q ss_pred hhHHHHHhhHHHHH
Q psy4038 147 AMVDNLFHEMGHAM 160 (371)
Q Consensus 147 ~~v~tLfHE~GHal 160 (371)
..+.|++||+||.|
T Consensus 144 ~~~~t~AHElGHnL 157 (228)
T cd04271 144 NEWQVFAHEIGHTF 157 (228)
T ss_pred ccceehhhhhhhhc
Confidence 45579999999998
No 49
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=65.58 E-value=3 Score=36.99 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=11.6
Q ss_pred HHHHHhhHHHHHhh
Q psy4038 149 VDNLFHEMGHAMHS 162 (371)
Q Consensus 149 v~tLfHE~GHalH~ 162 (371)
+.|+.|||||||=.
T Consensus 75 ~g~v~HE~~HalG~ 88 (180)
T cd04280 75 LGTIVHELMHALGF 88 (180)
T ss_pred CchhHHHHHHHhcC
Confidence 57899999999743
No 50
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=64.14 E-value=6.1 Score=36.30 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=16.6
Q ss_pred ChhhHHHHHhhHHHHHhhhh
Q psy4038 145 TPAMVDNLFHEMGHAMHSML 164 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH~ll 164 (371)
+...+.+=+||.|||+++--
T Consensus 86 SiaAvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 86 SIAAVAVAAHEVGHAIQHAE 105 (222)
T ss_pred CHHHHHHHHHHHhHHHhccc
Confidence 55678888999999999654
No 51
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=63.11 E-value=4.4 Score=36.27 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=12.4
Q ss_pred hHHHHHhhHHHHHhh
Q psy4038 148 MVDNLFHEMGHAMHS 162 (371)
Q Consensus 148 ~v~tLfHE~GHalH~ 162 (371)
.+.|+.|||||||=.
T Consensus 79 ~~~~i~HEl~HaLG~ 93 (191)
T PF01400_consen 79 SVGTILHELGHALGF 93 (191)
T ss_dssp SHHHHHHHHHHHHTB
T ss_pred CccchHHHHHHHHhh
Confidence 567899999999843
No 52
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=62.48 E-value=5 Score=33.57 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=13.4
Q ss_pred ChhhHHHHHhhHHHHHh
Q psy4038 145 TPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH 161 (371)
.++.+....||+||.|=
T Consensus 74 gy~~~RIaaHE~GHiLG 90 (132)
T PF02031_consen 74 GYNSTRIAAHELGHILG 90 (132)
T ss_dssp HS-HHHHHHHHHHHHHT
T ss_pred CCccceeeeehhccccC
Confidence 45677889999999875
No 53
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=61.94 E-value=3.4 Score=36.70 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.2
Q ss_pred ChhhHHHHHhhHHHHH
Q psy4038 145 TPAMVDNLFHEMGHAM 160 (371)
Q Consensus 145 ~~~~v~tLfHE~GHal 160 (371)
......|++||+||.+
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 3456789999999998
No 54
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=61.56 E-value=4 Score=37.22 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=13.8
Q ss_pred HHHHhhHHHHHhhhhhccCCC
Q psy4038 150 DNLFHEMGHAMHSMLARTDYQ 170 (371)
Q Consensus 150 ~tLfHE~GHalH~lls~~~~~ 170 (371)
.++.||+||++= |.+++|.
T Consensus 135 hvi~HEiGH~IG--fRHTD~~ 153 (211)
T PF12388_consen 135 HVITHEIGHCIG--FRHTDYF 153 (211)
T ss_pred HHHHHHhhhhcc--ccccCcC
Confidence 479999999996 4445444
No 55
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=61.37 E-value=4.3 Score=36.23 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHHhhhh
Q psy4038 149 VDNLFHEMGHAMHSML 164 (371)
Q Consensus 149 v~tLfHE~GHalH~ll 164 (371)
+-|+.||+||||=..-
T Consensus 78 ~G~i~HEl~HaLG~~H 93 (182)
T cd04283 78 KGIIQHELLHALGFYH 93 (182)
T ss_pred cchHHHHHHHHhCCcc
Confidence 4689999999985443
No 56
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=59.01 E-value=5.1 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.8
Q ss_pred hhhHHHHHhhHHHHH
Q psy4038 146 PAMVDNLFHEMGHAM 160 (371)
Q Consensus 146 ~~~v~tLfHE~GHal 160 (371)
...+.+++||+||.+
T Consensus 129 ~~~a~~~AHElGH~l 143 (194)
T cd04269 129 LLFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345789999999998
No 57
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=57.68 E-value=6.4 Score=34.88 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=16.4
Q ss_pred HHHHHhhHHHHHhhhhhccCCCcc
Q psy4038 149 VDNLFHEMGHAMHSMLARTDYQHV 172 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~~~~~~ 172 (371)
+..++||+||++=......+....
T Consensus 8 i~i~~HE~gH~~~a~~~G~~~~~~ 31 (192)
T PF02163_consen 8 ISIVLHELGHALAARLYGDKVPRF 31 (192)
T ss_dssp HHHHHHHHHHHHHHHTTT--B--E
T ss_pred cccccccccccccccccccccccc
Confidence 567899999999988876555444
No 58
>KOG3658|consensus
Probab=57.52 E-value=12 Score=39.55 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=16.3
Q ss_pred CCCcccceeeecccCCCCCCCCc
Q psy4038 85 KEGLLGYIYCDFFERQKKPNQDC 107 (371)
Q Consensus 85 ~~~~lG~~ylDl~~R~gK~~ga~ 107 (371)
++..||.-|+-- ||.|-.+|-+
T Consensus 338 e~GtLGLAwVgs-p~~~saGGIC 359 (764)
T KOG3658|consen 338 EGGTLGLAWVGS-PRSNSAGGIC 359 (764)
T ss_pred ccceeeeEEecc-CccCCCCccc
Confidence 467899999866 7777766654
No 59
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=55.89 E-value=5.9 Score=35.89 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHHhhhh
Q psy4038 149 VDNLFHEMGHAMHSML 164 (371)
Q Consensus 149 v~tLfHE~GHalH~ll 164 (371)
+-|+.||+||||=..-
T Consensus 88 ~Gti~HEl~HaLGf~H 103 (200)
T cd04281 88 FGIVVHELGHVIGFWH 103 (200)
T ss_pred CchHHHHHHHHhcCcc
Confidence 4689999999985433
No 60
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=54.84 E-value=2.7 Score=40.19 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.7
Q ss_pred hHHHHHhhHHHHHh
Q psy4038 148 MVDNLFHEMGHAMH 161 (371)
Q Consensus 148 ~v~tLfHE~GHalH 161 (371)
.+.|++|||||+|-
T Consensus 165 ~igv~~HE~gH~lG 178 (286)
T TIGR03296 165 GVGVIAHELGHDLG 178 (286)
T ss_pred ceeeeehhhhcccC
Confidence 47889999999764
No 61
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=54.18 E-value=11 Score=28.87 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=14.5
Q ss_pred ChhhHHHHHhhHHHHHhh
Q psy4038 145 TPAMVDNLFHEMGHAMHS 162 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH~ 162 (371)
+..+...|.||+.|+++.
T Consensus 58 s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 58 SPEGRALLAHELAHVVQQ 75 (79)
T ss_pred CCCcchhHhHHHHHHHhh
Confidence 444677899999999985
No 62
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=53.16 E-value=8.3 Score=34.37 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.9
Q ss_pred HHHHHhhHHHHHhhhhhccC
Q psy4038 149 VDNLFHEMGHAMHSMLARTD 168 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~~ 168 (371)
+..+.||+||.+-.....-+
T Consensus 10 ~~v~iHElGH~~~Ar~~Gv~ 29 (182)
T cd06163 10 ILIFVHELGHFLVAKLFGVK 29 (182)
T ss_pred HHHHHHHHHHHHHHHHcCCe
Confidence 56789999999987776544
No 63
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=53.08 E-value=7.1 Score=36.95 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=12.3
Q ss_pred hHHHHHhhHHHHHhhhhh
Q psy4038 148 MVDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 148 ~v~tLfHE~GHalH~lls 165 (371)
-..++.|||||++-.|--
T Consensus 216 ~~~v~vHE~GHsf~~LaD 233 (264)
T PF09471_consen 216 FKQVVVHEFGHSFGGLAD 233 (264)
T ss_dssp HHHHHHHHHHHHTT----
T ss_pred ccceeeeecccccccccc
Confidence 467899999999988764
No 64
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=52.86 E-value=8.4 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=14.8
Q ss_pred HHHHHhhHHHHHhhhhhcc
Q psy4038 149 VDNLFHEMGHAMHSMLART 167 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~ 167 (371)
+..+.||+||++=.....-
T Consensus 9 i~i~iHE~gH~~~A~~~G~ 27 (180)
T cd05709 9 ISVTVHELGHALVARRLGV 27 (180)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 4568999999997766644
No 65
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=51.58 E-value=8.1 Score=34.91 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=10.6
Q ss_pred HHHHhhHHHHHh
Q psy4038 150 DNLFHEMGHAMH 161 (371)
Q Consensus 150 ~tLfHE~GHalH 161 (371)
.++.||+||+|=
T Consensus 118 ~~~~he~gh~lG 129 (197)
T cd04276 118 YLLAHEVGHTLG 129 (197)
T ss_pred HHHHHHHHHHhc
Confidence 589999999984
No 66
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=50.40 E-value=41 Score=23.60 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCCh
Q psy4038 299 ASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITA 347 (371)
Q Consensus 299 A~~i~~~~~~~~~~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~ 347 (371)
|..+++...+.+|-|.++.-.+-...++.|.-....++++..+..+|+.
T Consensus 10 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 10 AIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 5667888778888888988888888899999999999999999999985
No 67
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=49.97 E-value=9.8 Score=34.52 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=14.3
Q ss_pred HHHHHhhHHHHHhhhhhcc
Q psy4038 149 VDNLFHEMGHAMHSMLART 167 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~ 167 (371)
+..++||+||++=...-..
T Consensus 39 ~~v~iHElgH~~~A~~~G~ 57 (208)
T cd06161 39 LSVLLHELGHALVARRYGI 57 (208)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 4668999999987666543
No 68
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=47.26 E-value=9.5 Score=35.35 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=13.0
Q ss_pred HHHHHhhHHHHHhhhhh
Q psy4038 149 VDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 149 v~tLfHE~GHalH~lls 165 (371)
+-|+.||+||||=..--
T Consensus 121 ~Gti~HEl~HalGf~HE 137 (230)
T cd04282 121 KATVEHEFLHALGFYHE 137 (230)
T ss_pred CchHHHHHHHHhCCccc
Confidence 46789999999864443
No 69
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=46.79 E-value=14 Score=33.27 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=17.4
Q ss_pred CChhhHH-HHHhhHHHHHhhhhhcc
Q psy4038 144 LTPAMVD-NLFHEMGHAMHSMLART 167 (371)
Q Consensus 144 l~~~~v~-tLfHE~GHalH~lls~~ 167 (371)
++-+++. .|+||+||..|.-....
T Consensus 84 ~~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 84 LSEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp SSHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCcchH
Confidence 3556654 79999999998665443
No 70
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=45.01 E-value=15 Score=30.76 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=28.2
Q ss_pred hHHHHHhhHHHHHhhhhhccCCCcccCccccchhhccchHHHHHhhc
Q psy4038 148 MVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFAS 194 (371)
Q Consensus 148 ~v~tLfHE~GHalH~lls~~~~~~~sg~~~~~D~aE~pS~~~E~~~~ 194 (371)
++.|++|| +.|.++-++-.+.--+ ..|+-+.|--.++||..-.
T Consensus 1 ~~~T~~HE---a~HQl~~N~Gl~~r~~-~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 1 NIATIAHE---ATHQLAFNTGLHPRLA-DWPRWVSEGLATYFETPGM 43 (128)
T ss_pred CchHHHHH---HHHHHHHHccccccCC-CCchHHHHhHHHHcCCCcc
Confidence 57899999 5666666553332222 3677788888888876543
No 71
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=42.27 E-value=15 Score=34.75 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=13.1
Q ss_pred HHHHHhhHHHHHhhhhh
Q psy4038 149 VDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 149 v~tLfHE~GHalH~lls 165 (371)
+..+.||+||++=...-
T Consensus 119 isv~iHElgHa~~Ar~~ 135 (263)
T cd06159 119 VGVVVHELSHGILARVE 135 (263)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 35789999999876554
No 72
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=41.93 E-value=15 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.6
Q ss_pred ChhhHHHHHhhHHHHH
Q psy4038 145 TPAMVDNLFHEMGHAM 160 (371)
Q Consensus 145 ~~~~v~tLfHE~GHal 160 (371)
...-..+++||+||.+
T Consensus 128 ~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 128 GLSFAVIIAHELGHNL 143 (199)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3445688999999986
No 73
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=40.62 E-value=17 Score=33.58 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.0
Q ss_pred HHHHHhhHHHHHhhhhh
Q psy4038 149 VDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 149 v~tLfHE~GHalH~lls 165 (371)
+..++||+||++=...-
T Consensus 54 ~~v~iHElgH~~~A~~~ 70 (227)
T cd06164 54 ASVLLHELGHSLVARRY 70 (227)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45689999999875554
No 74
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=39.51 E-value=2.3e+02 Score=29.37 Aligned_cols=169 Identities=14% Similarity=0.078 Sum_probs=85.4
Q ss_pred ChhhHHHHHhhH--HHHHhhhhhccCCCc-ccCccccchhhccchHHHHHhhcCHHHHH-HHhhhccCCCCCcHHHHHHH
Q psy4038 145 TPAMVDNLFHEM--GHAMHSMLARTDYQH-VTGTRCATDFAEVPSVLMEFFASDPRVIK-SFAKHYIGGQPMPEEMLQSF 220 (371)
Q Consensus 145 ~~~~v~tLfHE~--GHalH~lls~~~~~~-~sg~~~~~D~aE~pS~~~E~~~~~~~~L~-~~~~h~~t~~~lp~~l~~~l 220 (371)
.+.-..|++||. ||-+|...++.. +. ++..+ .-+ -..+-+.|=|+.--+.|. .-..-+.+ -|...+-.+
T Consensus 369 ~~~~~~~~~HE~~PGHh~Q~~~~~~~-~~~~~~~r--~~~-~~~~~~~EGWAlY~E~l~~~e~G~~~~---~p~~~lg~l 441 (549)
T PF05960_consen 369 KYSLYTTAAHEAYPGHHLQIAYANEH-PDKLPPFR--RLL-GSYTAFVEGWALYAEQLMYDELGLYDD---DPLDRLGQL 441 (549)
T ss_dssp CTCHHHHHHHHSTTTHHHHHHHHHHT-CCGS-HHH--HHC----HHHHHHHHHHHHHHHHHHTTTTCC---SHHHHHHHH
T ss_pred hhhHHHHHHhhcCCcHHHHHHHHHHc-cccCcHHH--Hhc-cccCchhhHHHHHHHHHHHHhcCCCCC---CHHHHHHHH
Confidence 455668999998 999999988763 21 21111 111 112577788876555432 11122211 133322222
Q ss_pred HHhhhHhhHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCC-CCccccccccccccCccchhHHHHHHHH
Q psy4038 221 CLSKKLFQASEMQAQVFYSALDLEYHSSEVTNTFQQLKECQNTYYGIPYIE-HTAWQHRFSHLVGYGAKYYSYLLSRAVA 299 (371)
Q Consensus 221 ~~~~~~~~~~~~~~ql~~a~~D~~lH~~~~~~~~~l~~~l~~~~~g~~~~~-~~~w~~~f~Hl~~Y~a~YYsYl~s~v~A 299 (371)
-..+.......+|.-+|... -+..+...-+ .+..++.... ... ..-+...|+++-+|..|+.-=
T Consensus 442 ---------~~~l~ra~r~vvD~glH~~~-wt~e~a~~~l-~~~~~~~~~~a~~e----v~ry~~~Pgq~~sY~~G~l~i 506 (549)
T PF05960_consen 442 ---------NDELWRAARLVVDTGLHYGG-WTREQAIDYL-VENTGFSEEEAESE----VDRYISSPGQALSYKVGYLEI 506 (549)
T ss_dssp ---------HHHHHHHHHHHHHHHHHCCB---HHHHHHHH-HHHS-S-HHHHHHH----HHHHHHSTTGGGHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhhhcCC-CCHHHHHHHH-HHhcCCChHHHHHH----HHHHHhCcHHHHHHHHHHHHH
Confidence 23344578889999999862 1222322222 2322332100 000 111122577777999998777
Q ss_pred HHHHHHHHhh-C-CCChHHHHHHHHHHhcCCCCccHHHHHHHH
Q psy4038 300 SWIWQSYFEK-D-PFSRDSGDAYRLNCLSHGGGKPASKLVSDF 340 (371)
Q Consensus 300 ~~i~~~~~~~-~-~~~~~~g~~yr~~iL~~Ggs~~~~ell~~~ 340 (371)
.++-+...+. | .| ..+.|=+.||+.|.. |..+|++.
T Consensus 507 ~~LR~~a~~~lG~~F---~lk~FHd~iL~~G~~--Pl~~l~~~ 544 (549)
T PF05960_consen 507 LELREEAEEELGDKF---DLKEFHDAILSNGPL--PLDVLEEE 544 (549)
T ss_dssp HHHHHHHHHHHGGG-----HHHHHHHHHCT-S----HHHHHHH
T ss_pred HHHHHHHHHHhCCCC---CHHHHHHHHHhCCCC--CHHHHHHH
Confidence 7777766543 2 23 356676888876654 44566554
No 75
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=38.98 E-value=27 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=21.0
Q ss_pred cccCCCCCChhHHHHHHHHHHHhHhccE
Q psy4038 33 GIDFAPYFSLGTCMEGLNNLFNKIYGIT 60 (371)
Q Consensus 33 ~~~~~~yf~l~~vl~gl~~l~~~lfgi~ 60 (371)
+=.++||||-+. ..-|..+.++||+.
T Consensus 15 ~C~laPyFP~~~--~~~F~~vhkvFG~s 40 (101)
T PF03195_consen 15 DCVLAPYFPADQ--PQRFANVHKVFGVS 40 (101)
T ss_pred CCcCCCCCChhH--HHHHHHHHHHHchh
Confidence 356899999887 56677889999976
No 76
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=38.87 E-value=6.5 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.8
Q ss_pred hhhHHHHHhhHHHHHh
Q psy4038 146 PAMVDNLFHEMGHAMH 161 (371)
Q Consensus 146 ~~~v~tLfHE~GHalH 161 (371)
+..+.+++||+||.|=
T Consensus 138 ~~~a~~~aHElGH~LG 153 (207)
T cd04273 138 LSSAFTIAHELGHVLG 153 (207)
T ss_pred ceeEEeeeeechhhcC
Confidence 3456889999999883
No 77
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.17 E-value=1.5e+02 Score=23.15 Aligned_cols=62 Identities=8% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCCCc-cHHHHHHHHhCCCC-ChHHHHHHHHHH
Q psy4038 294 LSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGK-PASKLVSDFLQKDI-TAESLTNSLMQE 357 (371)
Q Consensus 294 ~s~v~A~~i~~~~~~~~~~~~~~g~~yr~~iL~~Ggs~-~~~ell~~~lGr~p-~~~a~~~~~~~~ 357 (371)
..++.+.++|..+.++|.+..+..+.. ...-..||+. -..+++.+.- |.| -..+|++++.+.
T Consensus 16 V~~L~~~~v~d~ll~~~ilT~~d~e~I-~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT 79 (88)
T cd08819 16 VDKMKTRDVCDKCLEQGLLTEEDRNRI-EAATENHGNESGARELLKRIV-QKEGWFSKFLQALRET 79 (88)
T ss_pred HHHhhHHHHHHHHHhcCCCCHHHHHHH-HHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHc
Confidence 456788899999999999887776666 3333354444 5566777776 666 566788877653
No 78
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=37.95 E-value=15 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=14.0
Q ss_pred cCChhhHHHHHhhHHHHHh
Q psy4038 143 LLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 143 ll~~~~v~tLfHE~GHalH 161 (371)
.+....-.++.||+||++=
T Consensus 188 t~~~s~~~~f~HE~GH~~G 206 (305)
T PF10462_consen 188 TLDYSYGNEFSHELGHNFG 206 (305)
T ss_dssp E-SS-SHHHHHHHHHHTTT
T ss_pred ecccCccceeehhhhhhcC
Confidence 3566778889999999973
No 79
>KOG3607|consensus
Probab=37.60 E-value=1e+02 Score=33.46 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.1
Q ss_pred ChhhHHHHHhhHHHHHh
Q psy4038 145 TPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH 161 (371)
....+.||+||+||.+=
T Consensus 320 ~~~~a~v~AhelgH~lG 336 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNLG 336 (716)
T ss_pred chhHHHHHHHHHHhhcC
Confidence 55678999999999874
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=37.42 E-value=35 Score=23.86 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCCh
Q psy4038 299 ASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITA 347 (371)
Q Consensus 299 A~~i~~~~~~~~~~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p~~ 347 (371)
|..+|+...+.+|.+.++...+=...+..|.-....+.++.++..+|+.
T Consensus 16 A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 16 AIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5566777777777777777777666677777777788888887777753
No 81
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=37.30 E-value=20 Score=34.17 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=13.0
Q ss_pred HHHHHhhHHHHHhhhhh
Q psy4038 149 VDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 149 v~tLfHE~GHalH~lls 165 (371)
+..+.||+||++=...-
T Consensus 136 isvvvHElgHal~A~~~ 152 (277)
T cd06162 136 ISGVVHEMGHGVAAVRE 152 (277)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 36789999999865543
No 82
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=37.25 E-value=16 Score=35.45 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.2
Q ss_pred hhHHHHHhhHHHHHh
Q psy4038 147 AMVDNLFHEMGHAMH 161 (371)
Q Consensus 147 ~~v~tLfHE~GHalH 161 (371)
.+..+++||+||-+=
T Consensus 149 ~~~~~~~HElgHN~G 163 (314)
T PF05548_consen 149 QDWATIMHELGHNLG 163 (314)
T ss_pred ccHHHHHHHhhhhcc
Confidence 355699999999874
No 83
>PTZ00337 surface protease GP63; Provisional
Probab=36.17 E-value=41 Score=35.50 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=23.5
Q ss_pred cCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHH
Q psy4038 123 QNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAM 160 (371)
Q Consensus 123 ~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHal 160 (371)
..|++. +.||++..-. . +-..+.+++||+.|||
T Consensus 209 ~RPi~G-~in~np~~i~--~--~~~~~~v~~HEi~HAL 241 (567)
T PTZ00337 209 GRPFAA-AVNFDPRQIA--V--TNGDVRVAAHELGHAL 241 (567)
T ss_pred CCceEE-EEEECHHHcc--c--hhHHHHHHHHHHHHHH
Confidence 578765 4688853221 1 4567999999999999
No 84
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=35.83 E-value=13 Score=36.90 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=27.3
Q ss_pred CCCccCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHhhhhhc
Q psy4038 119 NGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLAR 166 (371)
Q Consensus 119 ~G~~~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~ 166 (371)
|| +.|..-+.+ |+++....|..-.--|-..++||.||.|+.-|.-
T Consensus 159 DG--~~prMqMyl-w~~~~~~~p~rDg~~D~~Ii~HEy~HGiSnRLvg 203 (378)
T PF02128_consen 159 DG--QPPRMQMYL-WTPSTPASPNRDGDFDNGIIAHEYGHGISNRLVG 203 (378)
T ss_pred CC--CCceeeEEE-ecCCCCcCCCCCcccccCeeEEeecccccccccC
Confidence 55 556554432 4544422343333335666899999999988874
No 85
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=20 Score=33.90 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=15.8
Q ss_pred CChhhH-HHHHhhHHHHHhhhh
Q psy4038 144 LTPAMV-DNLFHEMGHAMHSML 164 (371)
Q Consensus 144 l~~~~v-~tLfHE~GHalH~ll 164 (371)
++-+|+ ..|.||+||..|.-.
T Consensus 152 l~~dEl~aVlaHElgHi~~rd~ 173 (302)
T COG0501 152 LNDDELEAVLAHELGHIKNRHT 173 (302)
T ss_pred CCHHHHHHHHHHHHHHHhcccH
Confidence 566776 458999999998543
No 86
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=33.44 E-value=28 Score=31.36 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=15.0
Q ss_pred ChhhHHHHHhhHHHHHhhhh
Q psy4038 145 TPAMVDNLFHEMGHAMHSML 164 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH~ll 164 (371)
+...+..-+||-|||++.--
T Consensus 89 Sia~~aVAAHEVGHAiQd~~ 108 (226)
T COG2738 89 SIAAIAVAAHEVGHAIQDQE 108 (226)
T ss_pred cHHHHHHHHHHhhHHHhhhc
Confidence 34456678999999998643
No 87
>PRK03982 heat shock protein HtpX; Provisional
Probab=33.15 E-value=21 Score=34.04 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=15.3
Q ss_pred ChhhH-HHHHhhHHHHHhhhhh
Q psy4038 145 TPAMV-DNLFHEMGHAMHSMLA 165 (371)
Q Consensus 145 ~~~~v-~tLfHE~GHalH~lls 165 (371)
+-+|+ ..|+||+||.-|.-..
T Consensus 121 ~~~El~AVlAHElgHi~~~h~~ 142 (288)
T PRK03982 121 NEDELEGVIAHELTHIKNRDTL 142 (288)
T ss_pred CHHHHHHHHHHHHHHHHcCCHH
Confidence 44554 5689999999986543
No 88
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=32.92 E-value=27 Score=31.13 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=13.3
Q ss_pred HHHHhhHHHHHhhhhhcc
Q psy4038 150 DNLFHEMGHAMHSMLART 167 (371)
Q Consensus 150 ~tLfHE~GHalH~lls~~ 167 (371)
..+.||+||++=...-..
T Consensus 43 ~l~iHElgH~~~A~~~G~ 60 (183)
T cd06160 43 ILGIHEMGHYLAARRHGV 60 (183)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 457999999987665543
No 89
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=32.05 E-value=29 Score=29.87 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHh
Q psy4038 149 VDNLFHEMGHAMH 161 (371)
Q Consensus 149 v~tLfHE~GHalH 161 (371)
+-.++|||+|++=
T Consensus 136 lDVvaHEltHGVt 148 (150)
T PF01447_consen 136 LDVVAHELTHGVT 148 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cceeeeccccccc
Confidence 6668999999973
No 90
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=31.37 E-value=27 Score=35.34 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=15.3
Q ss_pred hHHHHHhhHHHHHhhhhhcc
Q psy4038 148 MVDNLFHEMGHAMHSMLART 167 (371)
Q Consensus 148 ~v~tLfHE~GHalH~lls~~ 167 (371)
-+..+.||+||.+-.-...-
T Consensus 14 ~~~v~~HE~gH~~~a~~~g~ 33 (420)
T TIGR00054 14 AVLIFVHELGHFLAARLCGI 33 (420)
T ss_pred HHHHHHHhHHHHHHHHHcCC
Confidence 35678999999987766543
No 91
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=31.26 E-value=28 Score=31.40 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=15.3
Q ss_pred CCcCChhhHHHHHhhHHHHHh
Q psy4038 141 PCLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 141 p~ll~~~~v~tLfHE~GHalH 161 (371)
+.++--+-+.+..||+||.+-
T Consensus 138 ~~l~~~R~~Kea~HElGH~~G 158 (194)
T PF07998_consen 138 EELFLERVCKEAVHELGHLFG 158 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 334445557889999999975
No 92
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=31.15 E-value=36 Score=35.44 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=19.8
Q ss_pred cCCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHh
Q psy4038 123 QNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 123 ~~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH 161 (371)
..|++-. .||.+..-. ..-.-.-+.|++||++|||=
T Consensus 188 ~RP~~G~-in~~p~~i~--~~~~~~~~~~~~HEi~HaLG 223 (521)
T PF01457_consen 188 GRPIAGV-ININPSYIP--SFYFQEFFRTVIHEIAHALG 223 (521)
T ss_dssp S-EEEEE-EE--GGG-----S--HHHHHHHHHHHHHHTT
T ss_pred CCCeeEE-EEEchhHcc--chhhhcccceeeeeeeeeee
Confidence 4687654 588752211 11234568899999999984
No 93
>KOG3714|consensus
Probab=30.93 E-value=23 Score=35.73 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=15.5
Q ss_pred HHHHHhhHHHHHhhhhhccC
Q psy4038 149 VDNLFHEMGHAMHSMLARTD 168 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~~ 168 (371)
.-|..||+||||=..-.+++
T Consensus 160 ~G~i~HEl~HaLGf~HehsR 179 (411)
T KOG3714|consen 160 FGTIVHELMHALGFWHEHSR 179 (411)
T ss_pred CchhHHHHHHHhhhhhccCc
Confidence 67789999999976665543
No 94
>PRK03001 M48 family peptidase; Provisional
Probab=30.31 E-value=25 Score=33.45 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=15.8
Q ss_pred CChhhH-HHHHhhHHHHHhhhhh
Q psy4038 144 LTPAMV-DNLFHEMGHAMHSMLA 165 (371)
Q Consensus 144 l~~~~v-~tLfHE~GHalH~lls 165 (371)
++-+|+ ..|+||+||.-|.-..
T Consensus 119 l~~~El~aVlAHElgHi~~~h~~ 141 (283)
T PRK03001 119 LSEREIRGVMAHELAHVKHRDIL 141 (283)
T ss_pred CCHHHHHHHHHHHHHHHhCCChH
Confidence 355664 5689999999987543
No 95
>PRK02870 heat shock protein HtpX; Provisional
Probab=29.70 E-value=27 Score=34.32 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.2
Q ss_pred CChhhH-HHHHhhHHHHHhhhh
Q psy4038 144 LTPAMV-DNLFHEMGHAMHSML 164 (371)
Q Consensus 144 l~~~~v-~tLfHE~GHalH~ll 164 (371)
++-+|+ ..++||+||.-|.-.
T Consensus 168 L~~dEL~aVlAHELgHik~~di 189 (336)
T PRK02870 168 LDRDELQAVMAHELSHIRHGDI 189 (336)
T ss_pred CCHHHHHHHHHHHHHHHHcccH
Confidence 355664 458999999988543
No 96
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=29.57 E-value=2.4e+02 Score=21.77 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCCCccHHHHHHHHhCCCC-ChHHHHHHHHHHH
Q psy4038 290 YSYLLSRAVASWIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDI-TAESLTNSLMQEL 358 (371)
Q Consensus 290 YsYl~s~v~A~~i~~~~~~~~~~~~~~g~~yr~~iL~~Ggs~~~~ell~~~lGr~p-~~~a~~~~~~~~l 358 (371)
..++-..+.+..++....+.+.++.+- . .+|.+.+.++.-...+-+.|-|.| .-.+|++++...-
T Consensus 9 R~~L~~~L~~~~l~d~L~s~~ILt~~d---~-EeI~~~~t~~~qa~~LLdiL~rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 9 RHYLCDKIIADRHFDYLRSKRILTRDD---C-EEISCRTTSRKQAGKLLDILAENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHhcHHHHHHHHHHcCCCCHHH---H-HHHhccCCcHHHHHHHHHHHhhCchHHHHHHHHHHHcc
Confidence 356677788888888888888887654 3 456667777776666666655776 5667777776543
No 97
>KOG2661|consensus
Probab=28.75 E-value=74 Score=31.16 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHhhhhhcc----CCCcccCcc-ccchhhccch-HHHHHhhcCH
Q psy4038 149 VDNLFHEMGHAMHSMLART----DYQHVTGTR-CATDFAEVPS-VLMEFFASDP 196 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~----~~~~~sg~~-~~~D~aE~pS-~~~E~~~~~~ 196 (371)
...|.||+||++-..-+.. ..-.+-|.- +.++.+-.|+ .+.|.++.-|
T Consensus 276 AtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~~~a~~~n~~Ll~~flrlP 329 (424)
T KOG2661|consen 276 ATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTMIWAICPNDKLLEYFLRLP 329 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccchHHHHHHHhcCc
Confidence 3558999999986555432 111122221 3466666677 5555555444
No 98
>PRK04897 heat shock protein HtpX; Provisional
Probab=28.05 E-value=27 Score=33.53 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=14.6
Q ss_pred ChhhH-HHHHhhHHHHHhhhh
Q psy4038 145 TPAMV-DNLFHEMGHAMHSML 164 (371)
Q Consensus 145 ~~~~v-~tLfHE~GHalH~ll 164 (371)
+-+|+ ..|+||+||.-|.-.
T Consensus 133 ~~~El~aVlAHElgHi~~~d~ 153 (298)
T PRK04897 133 NREELEGVIGHEISHIRNYDI 153 (298)
T ss_pred CHHHHHHHHHHHHHHHhcCCH
Confidence 44564 468999999987544
No 99
>PF01742 Peptidase_M27: Clostridial neurotoxin zinc protease This family is a subset of the Prosite family; InterPro: IPR000395 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M27 (clan MA(E)). A number of the proteins have been classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the family. There are seven antigenically distinct forms of botulinum neurotoxin, designated A, B, C1, D, E, F and G. The seven neurotoxins are potent protein toxins that inhibit neurotransmitter release from peripheral cholinergic synapses []. On binding to the neuronal synapses, the molecules are internalised and move by retrograde transport up the axon into the spinal cord, where they can move between post- and presynaptic neurons. The toxin inhibits neurotransmitter release by acting as a zinc endopeptidase that cleaves synaptic proteins such as synaptobrevins, syntaxin and SNAP-25 []. The protein toxins exist as disulphide-linked heterodimers of light and heavy chains. The light chain has the pharmacological activity, while the N- and C-termini of the heavy chain mediate channel formation and toxin binding []. The light chain exhibits a high level of sequence similarity to tetanus toxin (TeTx). Alignment of all characterised neurotoxin sequences reveals the presence of highly conserved amino acid domains interspersed with amino acid tracts with little overall similarity. The most divergent region corresponds to the C-terminal extremity of each toxin, which may reflect differences in specificity of binding to neurone acceptor sites []. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0009405 pathogenesis; PDB: 2QN0_A 3D3X_A 3NF3_A 2ISG_A 2ISE_B 2IMC_B 2IMA_B 2ILP_A 2IMB_A 2ISH_A ....
Probab=27.84 E-value=42 Score=33.42 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=17.4
Q ss_pred ChhhHHHHHhhHHHHHhhhhhc
Q psy4038 145 TPAMVDNLFHEMGHAMHSMLAR 166 (371)
Q Consensus 145 ~~~~v~tLfHE~GHalH~lls~ 166 (371)
-.+-+.+|+||+=|+||.|..-
T Consensus 211 ~~DPAl~LmheLIh~Lh~LYGi 232 (408)
T PF01742_consen 211 YADPALELMHELIHSLHGLYGI 232 (408)
T ss_dssp E--HHHHHHHHHHHHHHHHTTT
T ss_pred ecCHHHHHHHHHHHHHHhhccc
Confidence 3455789999999999999873
No 100
>PRK01345 heat shock protein HtpX; Provisional
Probab=27.47 E-value=32 Score=33.47 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=15.3
Q ss_pred ChhhH-HHHHhhHHHHHhhhhh
Q psy4038 145 TPAMV-DNLFHEMGHAMHSMLA 165 (371)
Q Consensus 145 ~~~~v-~tLfHE~GHalH~lls 165 (371)
+-+|+ ..|+||+||..|.-..
T Consensus 120 ~~dEL~aVlAHElgHi~~~d~~ 141 (317)
T PRK01345 120 SPEEVAGVMAHELAHVKNRDTL 141 (317)
T ss_pred CHHHHHHHHHHHHHHHHcCCHH
Confidence 44564 4589999999986543
No 101
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=27.30 E-value=35 Score=34.79 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=14.2
Q ss_pred HHHHHhhHHHHHhhhhhcc
Q psy4038 149 VDNLFHEMGHAMHSMLART 167 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~ 167 (371)
+..++||+||.+-.-+..-
T Consensus 16 ~li~vHElGHfl~Ar~~gv 34 (449)
T PRK10779 16 VLITVHEFGHFWVARRCGV 34 (449)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 5668999999987665543
No 102
>KOG2921|consensus
Probab=26.83 E-value=43 Score=33.49 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCCCcCChhhHHHHHhhHHHHHhhhhhccC
Q psy4038 138 WSSPCLLTPAMVDNLFHEMGHAMHSMLARTD 168 (371)
Q Consensus 138 ~~~p~ll~~~~v~tLfHE~GHalH~lls~~~ 168 (371)
.+-+-.++--=+...+||+|||+-......+
T Consensus 121 ~~I~yf~t~lvi~~vvHElGHalAA~segV~ 151 (484)
T KOG2921|consen 121 SGIAYFLTSLVITVVVHELGHALAAASEGVQ 151 (484)
T ss_pred ccchhhhhhHHHHHHHHHhhHHHHHHhcCce
Confidence 3334455555567789999999987766543
No 103
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=32 Score=31.31 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=15.3
Q ss_pred CCcCChhhHHHHHhhHHHHHh
Q psy4038 141 PCLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 141 p~ll~~~~v~tLfHE~GHalH 161 (371)
|..+.-+=+-|.-||+|||+-
T Consensus 180 pg~~~e~L~~tarhElGhaLg 200 (236)
T COG5549 180 PGELRENLNPTARHELGHALG 200 (236)
T ss_pred cccchhhhhHHHHHhhcchhe
Confidence 344444557899999999984
No 104
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=26.67 E-value=11 Score=40.12 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=11.2
Q ss_pred hHHHHHhhHHHHH
Q psy4038 148 MVDNLFHEMGHAM 160 (371)
Q Consensus 148 ~v~tLfHE~GHal 160 (371)
-|-+++|||||+|
T Consensus 221 giGVfaHEfGH~L 233 (645)
T PF05547_consen 221 GIGVFAHEFGHDL 233 (645)
T ss_pred ceEEEEeeccccC
Confidence 4778999999987
No 105
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=26.66 E-value=33 Score=32.69 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHhhh
Q psy4038 149 VDNLFHEMGHAMHSM 163 (371)
Q Consensus 149 v~tLfHE~GHalH~l 163 (371)
---+.||+||.++.-
T Consensus 220 ~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 220 GWGPWHELGHNHQQG 234 (307)
T ss_dssp -HHHHHHHHHHH-BG
T ss_pred CeeehhhhhhhcCcc
Confidence 445899999999854
No 106
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=25.73 E-value=31 Score=32.56 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.7
Q ss_pred hHHHHHhhHHHHH
Q psy4038 148 MVDNLFHEMGHAM 160 (371)
Q Consensus 148 ~v~tLfHE~GHal 160 (371)
=..||+||+||..
T Consensus 203 yyaTl~HElghwt 215 (316)
T COG4227 203 YYATLLHELGHWT 215 (316)
T ss_pred HHHHHHHHhcccc
Confidence 3689999999864
No 107
>PRK03072 heat shock protein HtpX; Provisional
Probab=24.74 E-value=36 Score=32.53 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=15.8
Q ss_pred CChhhH-HHHHhhHHHHHhhhhh
Q psy4038 144 LTPAMV-DNLFHEMGHAMHSMLA 165 (371)
Q Consensus 144 l~~~~v-~tLfHE~GHalH~lls 165 (371)
++-+|+ -.++||+||.-|.-.-
T Consensus 122 l~~~El~aVlAHElgHi~~~d~~ 144 (288)
T PRK03072 122 LNERELRGVLGHELSHVYNRDIL 144 (288)
T ss_pred CCHHHHHHHHHHHHHHHhcCCHH
Confidence 355664 4689999999875544
No 108
>PRK05457 heat shock protein HtpX; Provisional
Probab=24.67 E-value=35 Score=32.60 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=14.6
Q ss_pred CChhhH-HHHHhhHHHHHhhh
Q psy4038 144 LTPAMV-DNLFHEMGHAMHSM 163 (371)
Q Consensus 144 l~~~~v-~tLfHE~GHalH~l 163 (371)
++-+|+ -.++||+||.-|.-
T Consensus 129 L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 129 MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 455665 45899999988753
No 109
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=24.19 E-value=69 Score=29.20 Aligned_cols=14 Identities=36% Similarity=0.237 Sum_probs=11.3
Q ss_pred hHHHHHhhHHHHHh
Q psy4038 148 MVDNLFHEMGHAMH 161 (371)
Q Consensus 148 ~v~tLfHE~GHalH 161 (371)
-...|+||++||.=
T Consensus 93 ~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 93 TGSILAHELMHAWL 106 (212)
T ss_pred HhhHHHHHHHHHHh
Confidence 35669999999975
No 110
>KOG2719|consensus
Probab=23.77 E-value=45 Score=33.72 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHhhhhhcc
Q psy4038 149 VDNLFHEMGHAMHSMLART 167 (371)
Q Consensus 149 v~tLfHE~GHalH~lls~~ 167 (371)
+..++||+||--|....+.
T Consensus 281 ~AVl~HELGHW~~~H~~K~ 299 (428)
T KOG2719|consen 281 VAVLAHELGHWKLNHVLKN 299 (428)
T ss_pred HHHHHHHhhHHHHhhHHHH
Confidence 5679999999999877654
No 111
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=22.97 E-value=2.1e+02 Score=20.88 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHhc---cEEEEEcCCCCCCCCcceeEEEEEeCCCCcccceeeeccc
Q psy4038 46 MEGLNNLFNKIYG---ITLQHVEANNGELWSSDVYKLAVTHEKEGLLGYIYCDFFE 98 (371)
Q Consensus 46 l~gl~~l~~~lfg---i~f~~~~~~~~~~W~~dV~~~~v~~~~~~~lG~~ylDl~~ 98 (371)
+..+..-++++|| |++.+.+. =..+|.+| -++.+||.+|-|-..
T Consensus 2 i~klq~yLr~~f~n~~i~v~~rpk-----~~dsaEV~----~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 2 IKKLQAYLRRTFGNPGITVKARPK-----KDDSAEVY----IGDEFIGVIYRDEDE 48 (63)
T ss_pred hHHHHHHHHHHhCCCceEEEcCCC-----CCCceEEE----eCCEEEEEEEeecCC
Confidence 3456667788884 44443321 13455554 266899999998664
No 112
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=22.77 E-value=88 Score=26.36 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCCc-cHHHHHHHHhCCCCCh
Q psy4038 316 SGDAYRLNCLSHGGGK-PASKLVSDFLQKDITA 347 (371)
Q Consensus 316 ~g~~yr~~iL~~Ggs~-~~~ell~~~lGr~p~~ 347 (371)
..+.||+.++.+-... -..-.++.+|||+|..
T Consensus 56 ~S~~yr~~f~~~~~~~R~iEl~~khlLGR~p~~ 88 (131)
T PF00427_consen 56 KSELYRKRFFEPNSNYRFIELAFKHLLGRAPYN 88 (131)
T ss_dssp TSHHHHHHHTTTS-HHHHHHHHHHHHCSS--SS
T ss_pred cCHHHHHHHcccccchHHHHHHHHHHhCCCCCC
Confidence 3456777777644333 3444678889999973
No 113
>PRK01265 heat shock protein HtpX; Provisional
Probab=22.34 E-value=44 Score=32.65 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=15.9
Q ss_pred CChhhH-HHHHhhHHHHHhhhhh
Q psy4038 144 LTPAMV-DNLFHEMGHAMHSMLA 165 (371)
Q Consensus 144 l~~~~v-~tLfHE~GHalH~lls 165 (371)
++-+|+ ..++||+||.-|.-..
T Consensus 135 l~~~El~aVlAHElgHik~~d~~ 157 (324)
T PRK01265 135 LNRDEIKAVAGHELGHLKHRDVE 157 (324)
T ss_pred CCHHHHHHHHHHHHHHHHcccHH
Confidence 455665 4689999999886543
No 114
>PRK02391 heat shock protein HtpX; Provisional
Probab=22.29 E-value=41 Score=32.33 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=14.5
Q ss_pred ChhhH-HHHHhhHHHHHhhhh
Q psy4038 145 TPAMV-DNLFHEMGHAMHSML 164 (371)
Q Consensus 145 ~~~~v-~tLfHE~GHalH~ll 164 (371)
+-+|+ ..++||+||.-|.-.
T Consensus 129 ~~~El~aVlaHElgHi~~~di 149 (296)
T PRK02391 129 DPDELEAVLAHELSHVKNRDV 149 (296)
T ss_pred CHHHHHHHHHHHHHHHHcCCH
Confidence 44554 468999999988644
No 115
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=21.60 E-value=70 Score=34.03 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCeEEEeccCCCCCCCCCCcCChhhHHHHHhhHHHHHh
Q psy4038 124 NPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 124 ~P~~~l~~Nf~~~~~~~p~ll~~~~v~tLfHE~GHalH 161 (371)
.|++- ++||++..- ++--.-..+.+++||+.|||=
T Consensus 235 RPi~G-~iNinp~~i--~s~~~~~~~rv~~HEi~HALG 269 (622)
T PTZ00257 235 HPAVG-VMNIPAANI--VSRYDQGTTRTVTHEVAHALG 269 (622)
T ss_pred CceEE-EEeeCHHHC--CCccchHHHHHHHHHHHHHhc
Confidence 58765 468875221 111123468999999999995
No 116
>PHA00657 crystallin beta/gamma motif-containing protein
Probab=21.18 E-value=52 Score=37.66 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCCcCChhhHHHHHhhHHHHHhhhhh
Q psy4038 140 SPCLLTPAMVDNLFHEMGHAMHSMLA 165 (371)
Q Consensus 140 ~p~ll~~~~v~tLfHE~GHalH~lls 165 (371)
.-+|+.-.|..|+.||+||.+-.++.
T Consensus 783 ~I~l~KnAD~STFvHE~gH~fLE~~~ 808 (2052)
T PHA00657 783 TVSLLKNADLSTFLHESGHFFLEVQL 808 (2052)
T ss_pred eEEEeccccHHHHHHHHHHHHHHHHH
Confidence 34567778999999999999777663
No 117
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=20.65 E-value=1.9e+02 Score=22.37 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.8
Q ss_pred ccchhhccchHHHHHhhcCHHHHHHHhhhccCCCCCcHHHHHHHHHhhhHh
Q psy4038 177 CATDFAEVPSVLMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLF 227 (371)
Q Consensus 177 ~~~D~aE~pS~~~E~~~~~~~~L~~~~~h~~t~~~lp~~l~~~l~~~~~~~ 227 (371)
-.-|.-|++|+.-.+. .+++.+..|-+++.-|.+|+++.|..+.+-+
T Consensus 41 ~aa~ameiA~qa~~mi----~alRsiGahp~s~~Gi~dDllEnLq~~q~~m 87 (95)
T smart00759 41 KAADAMEIAEEAQQMI----GALRSIGAHPKSGAGIADDLLENLKASQKGM 87 (95)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHhcCCCCCccchHHHHHHHHHHHhhhh
Confidence 3577888888876654 3677888888899999999999987665433
No 118
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=20.54 E-value=53 Score=29.07 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=15.0
Q ss_pred CcCChhhHHHHHhhHHHHHh
Q psy4038 142 CLLTPAMVDNLFHEMGHAMH 161 (371)
Q Consensus 142 ~ll~~~~v~tLfHE~GHalH 161 (371)
-+..-+-+....||+||.+=
T Consensus 118 ~lf~ERv~KEv~HElGH~~G 137 (181)
T COG1913 118 ELFKERVVKEVLHELGHLLG 137 (181)
T ss_pred HHHHHHHHHHHHHHhhhhcC
Confidence 34455567889999999874
No 119
>KOG1565|consensus
Probab=20.24 E-value=36 Score=35.06 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=12.4
Q ss_pred hhHHHHHhhHHHHHhh
Q psy4038 147 AMVDNLFHEMGHAMHS 162 (371)
Q Consensus 147 ~~v~tLfHE~GHalH~ 162 (371)
+-..+..||+||+|=.
T Consensus 210 ~l~~Va~HEiGH~LGL 225 (469)
T KOG1565|consen 210 DLFLVAAHEIGHALGL 225 (469)
T ss_pred hhHHHhhhhccccccc
Confidence 3456789999999853
No 120
>PF06167 Peptidase_M90: Glucose-regulated metallo-peptidase M90; InterPro: IPR010384 MtfA (earlier known as YeeI) is a transcription factor that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (PtsG) system, the major glucose transporter in Escherichia coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity []. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in E. coli. ; PDB: 3DL1_A 3KHI_A.
Probab=20.07 E-value=77 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=13.0
Q ss_pred hHHHHHhhHHHHHhhhhhc
Q psy4038 148 MVDNLFHEMGHAMHSMLAR 166 (371)
Q Consensus 148 ~v~tLfHE~GHalH~lls~ 166 (371)
......|||-|.|+..-..
T Consensus 154 g~NVviHEfAH~LD~~~g~ 172 (253)
T PF06167_consen 154 GHNVVIHEFAHKLDMEDGA 172 (253)
T ss_dssp S--HHHHHHHHHHHCTTS-
T ss_pred CcchHHHHHHHHHHhhcCC
Confidence 3456899999999966543
Done!