RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4038
         (371 letters)



>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
           channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
          Length = 674

 Score =  263 bits (674), Expect = 2e-82
 Identities = 82/339 (24%), Positives = 144/339 (42%), Gaps = 5/339 (1%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD+ Y  N+ +  +  +       YF +     GL  ++ ++ G+            W  
Sbjct: 320 WDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAF--HHEEGASAWHE 377

Query: 75  DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
           DV          G ++G  Y D + R+ K      F ++ G    +GS Q  I  ++ N 
Sbjct: 378 DVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANF 437

Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
             P   +P LL    V   FHE GH MH + ++ ++   +GT   TDF E PS ++E + 
Sbjct: 438 TKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSGTHVETDFVEAPSQMLENWV 497

Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
            +   +   ++HY  G  +P E+L+    S++         Q+  + +D   H+    + 
Sbjct: 498 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 557

Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP- 311
            ++         G+P    T     F HL  GY A+YY YL S   +  ++ + F+++  
Sbjct: 558 AEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGV 617

Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESL 350
            +   G  YR   L  GG + AS ++  FL +D   ++ 
Sbjct: 618 LNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAF 656


>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
           hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
          Length = 678

 Score =  262 bits (673), Expect = 4e-82
 Identities = 89/339 (26%), Positives = 155/339 (45%), Gaps = 5/339 (1%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVEANNGELWSS 74
           WD+ Y   + +  K  +       YF +    EGL +++ ++ G++    +  +  +W+ 
Sbjct: 336 WDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSF--EQVPDAHVWNK 393

Query: 75  DVYKLAVTHEKEG-LLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNL 133
            V    V  +  G +LG  Y D + R+ K N    F ++ G  L +GS    +  L++N 
Sbjct: 394 SVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNF 453

Query: 134 PTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFA 193
             P    P LL    V+  FHE GH MH + A+TD+   +GT    DF EVPS ++E + 
Sbjct: 454 SQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDFARFSGTNVERDFVEVPSQMLENWV 513

Query: 194 SDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHSSEVTNT 253
            D   ++  +KHY  G P+ +E+L+    S+ +        Q+  S +D   H++   + 
Sbjct: 514 WDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATLDA 573

Query: 254 FQQLKECQNTYYGIPYIEHTAWQHRFSHLV-GYGAKYYSYLLSRAVASWIWQSYFEKDP- 311
             +  +      G+     T     F HL  GY  +YY YL S   +  ++ S F+K+  
Sbjct: 574 ASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGI 633

Query: 312 FSRDSGDAYRLNCLSHGGGKPASKLVSDFLQKDITAESL 350
            + + G  YR   L  GG      ++ +FLQ++   ++ 
Sbjct: 634 MNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAF 672


>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
           neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
           coli}
          Length = 680

 Score =  213 bits (545), Expect = 2e-63
 Identities = 95/340 (27%), Positives = 152/340 (44%), Gaps = 25/340 (7%)

Query: 15  WDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCM-EGLNNLFNKIYGITLQHVEANNGELWS 73
           WD A+ + + +R+K  L      PYF L T + EG+    N+++GI    VE  +  ++ 
Sbjct: 334 WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKF--VERFDIPVYH 391

Query: 74  SDVYKLAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGG------RKLSNGSYQNPIV 127
            DV    +       L   Y DFF R  K          GG       + S  +  +P++
Sbjct: 392 PDVRVWEIFDHNGVGLALFYGDFFARDSK---------SGGAWMGNFVEQSTLNKTHPVI 442

Query: 128 VLMLNLPTPRWSSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSV 187
             + N   P    P LL    V  LFHE GH +H + AR  Y  ++GT    DF E PS 
Sbjct: 443 YNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQ 502

Query: 188 LMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEYHS 247
           + E +A+ P+V   +A+HY  G  MP+E+ Q    +    +  EM   +  + LD+ +H 
Sbjct: 503 INEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHC 562

Query: 248 SEVTNTFQ-----QLKECQNTYYGIPYIEHTAWQHRFSHL--VGYGAKYYSYLLSRAVAS 300
            E     Q     +L+        +P I        F+H+   GY A YY+YL ++ +A 
Sbjct: 563 LEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLAD 622

Query: 301 WIWQSYFEKDPFSRDSGDAYRLNCLSHGGGKPASKLVSDF 340
             +Q + E+   +R++G  +R   LS G  +   +L   +
Sbjct: 623 DGYQWFVEQGGLTRENGLRFREAILSRGNSEDLERLYRQW 662


>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
           inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
           3ahm_A* 3aho_A* 2h1n_A 2h1j_A
          Length = 564

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 51/239 (21%)

Query: 149 VDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEF--------FASDPRVIK 200
           +D L HE GHA     +R  Y+         +  E+ S+ MEF        F  +    +
Sbjct: 351 IDVLTHEAGHAFQVYESR-HYEIPEYNWPTLEACEIHSMSMEFFTWPWMKLFFKEDA--E 407

Query: 201 SFAKHYIGGQPMPEEMLQSFCLS-------KKLFQASEMQAQVF---YSALDLEYHSSEV 250
            +  +++       + L               +++            + A++ +Y  ++ 
Sbjct: 408 KYQFYHL------SDALLFLPYGVAVDEFQHFVYENPNATPAERKQAWRAIERKYMPTKD 461

Query: 251 TNTFQQLKECQNTYYGIPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKD 310
                        Y G  Y+E   +  R SH+      Y  Y L++  A   W+   E  
Sbjct: 462 -------------YDGNDYLERGGFWQRQSHIYTTAFYYIDYTLAQICAFQFWKRSRENY 508

Query: 311 PFSRDSGDAYRLNCLSHGGGKPASKLVSDF-LQKDITAESLT------NSLMQELDKSS 362
               ++ + Y L     GG KP ++LV    L        +          +  +D  S
Sbjct: 509 K---EAWNDY-LTLCRQGGSKPFTELVRVANLISPFEDGCVQSVVGGIEGWLNSVDDQS 563


>3sks_A Putative oligoendopeptidase F; structural genomics, center for
           structural genomics of infec diseases, csgid, protease,
           hydrolase; 2.05A {Bacillus anthracis}
          Length = 567

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 43/228 (18%), Positives = 74/228 (32%), Gaps = 40/228 (17%)

Query: 149 VDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRVIKSFAKHYIG 208
           +D L HE GHA     +R  ++         +  E+ S+ MEFF      +K F +    
Sbjct: 354 IDVLTHEAGHAFQVYESR-KFEIPEYNWPTYEACEIHSMSMEFFTWP--WMKLFFE---- 406

Query: 209 GQPMPEEMLQSFCLSKKLFQASEMQAQVFYSALDLEY---------HSSEVTNTFQQLKE 259
                E+  +           S     + Y     EY          S E        + 
Sbjct: 407 -----EDADK-----YYFSHLSSALLFLPYGVSVDEYQHYVYENPEASPEERK--TAWRN 454

Query: 260 CQNTYYG------IPYIEHTAWQHRFSHLVGYGAKYYSYLLSRAVASWIWQSYFEKDPFS 313
            +  Y          Y+E   +  R  H+      Y  Y L++  A   W+   +     
Sbjct: 455 IEKKYLPHRDYEDNDYLERGGFWQRQGHIYSSPFYYIDYTLAQICALQFWKRARDNRQ-- 512

Query: 314 RDSGDAYRLNCLSHGGGKPASKLVSDF-LQKDITAESLTNSLMQELDK 360
            ++ + Y +N    GG K   +LV    L        +  S++ E++ 
Sbjct: 513 -EAWEDY-VNLCQQGGSKSFLELVEVANLTSPFAEGCV-KSVITEIEA 557


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 39/252 (15%), Positives = 84/252 (33%), Gaps = 80/252 (31%)

Query: 117 LSNGSYQNPIVVLMLNLPTPRWSSPCLL-------TPAMVDNLFHE-------------M 156
           LS+GS ++ ++V     PT  +     L        P   +    +             +
Sbjct: 11  LSHGSLEHVLLV-----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65

Query: 157 GHAMHSM--LARTDYQHVTGTRCATDF-------AEVPSVLMEFFASDP-------RVIK 200
           G+    +       +  V    C T+F        ++ ++  +    +         +IK
Sbjct: 66  GYVSSLVEPSKVGQFDQVLNL-CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124

Query: 201 SF--AKHYIGGQPMPEEMLQSFCLSKKLFQA-SEMQAQVFYSAL------DLEYHSSEVT 251
           ++  A+  +  +P  ++   S      LF+A  E  AQ+   A+        +Y      
Sbjct: 125 NYITARI-MAKRPFDKK-SNS-----ALFRAVGEGNAQLV--AIFGGQGNTDDY------ 169

Query: 252 NTFQQLKECQNTYYGI--PYIEHTAWQ-HRFSHLVGYGAKYYSYLLSRAVASWIW----- 303
             F++L++   TY+ +    I+ +A              K ++  L+  +  W+      
Sbjct: 170 --FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSNT 225

Query: 304 --QSYFEKDPFS 313
             + Y    P S
Sbjct: 226 PDKDYLLSIPIS 237



 Score = 29.6 bits (66), Expect = 2.1
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 44/130 (33%)

Query: 53   FNKIYGITLQHVEANNGELWSSDVYKLAVTHE--------KEGLLGYIY---CDFFERQK 101
            F   YG ++  +  NN          L + H         +E     I+    D   + +
Sbjct: 1653 FKDTYGFSILDIVINNPV-------NLTI-HFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704

Query: 102  KPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVDNLFHEM----- 156
            K  ++           ++ ++++   +L     T +++ P L         F ++     
Sbjct: 1705 KIFKEI------NEHSTSYTFRSEKGLLSA---T-QFTQPALTLMEKA--AFEDLKSKGL 1752

Query: 157  --------GH 158
                    GH
Sbjct: 1753 IPADATFAGH 1762


>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
           protein ST initiative; 2.50A {Enterococcus faecium}
          Length = 587

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 42/241 (17%), Positives = 79/241 (32%), Gaps = 48/241 (19%)

Query: 152 LFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFF--------ASDPRVIKSFA 203
           L HEMGH++HS   R++ Q       +   AE+ S   E            DPRV     
Sbjct: 367 LVHEMGHSVHSYFTRSN-QPYVYGDYSIFLAEIASTTNENILTEYLLETEKDPRVRAYVL 425

Query: 204 KHYIGGQPMPEEMLQSFC--LSKKLFQASEMQAQVFYSALDLEYHSSEVT-NTFQQL-KE 259
            HY+      +    +         F+         ++  +       +T         +
Sbjct: 426 NHYL------DGFKGTVFRQTQFAEFE------HFMHTEDE---KGVPLTSEYLSDSYGK 470

Query: 260 CQNTYYG---IPYIEHTAWQHRFSHLVGYGAKY-YSYLLSRAVASWIWQSYFEKDPFSRD 315
               YYG       E      R  H   Y   Y + Y    + AS + +    ++P   +
Sbjct: 471 LNAKYYGPAVEEDPEIKFEWSRIPHF--YYNYYVFQYSTGFSAASALAKKILNQEP---E 525

Query: 316 SGDAYRLNCLSHGGGKPASKLV---------SDFLQKDI-TAESLTNSLMQELDKSSYEQ 365
           + + Y L  L  G      +++         + +++  +   E   N L + +D+  +  
Sbjct: 526 ALENY-LAYLKAGNSDYPVEVMKKAGVDMTQAAYIEDAMSMFEQRLNELEELIDREGHHH 584

Query: 366 N 366
           +
Sbjct: 585 H 585


>3ce2_A Putative peptidase; structural genomics, unknown function, P
           protein structure initiative; 2.60A {Chlamydophila
           abortus}
          Length = 618

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 152 LFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLME 190
           + HE GH+MHS  +R  +Q     +     AE+ S L E
Sbjct: 400 IAHEGGHSMHSYFSR-KHQPFHDAQYPIFLAEIASTLNE 437


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 39.1 bits (90), Expect = 0.002
 Identities = 59/413 (14%), Positives = 111/413 (26%), Gaps = 125/413 (30%)

Query: 26  RDKLKLTGIDFAPY-FSLGTC------MEGLNNLFNKIYGITLQHVEANNGELWSSDVYK 78
                   +DF  +  +L  C      +E L  L  +I        +        S   K
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-------HSSNIK 224

Query: 79  LAVTHEKEGLLGYIYCDFFERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRW 138
           L +   +  L         + +   N  C   +     L N   QN       NL     
Sbjct: 225 LRIHSIQAELR-----RLLKSKPYEN--C-LLV-----LLN--VQNAKAWNAFNL----- 264

Query: 139 SSPCLLTPAMVDNLFHEMGHAMHSMLARTDYQHVTGTRCATDFAEVPSVLMEFFASDPRV 198
           S   LLT                     T ++ VT    A     +         +   V
Sbjct: 265 SCKILLT---------------------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 199 IKSFAKHYIGGQP--MPEEMLQSFCLSKKLFQAS--EMQAQV-FYSALDLEYHSSEVTNT 253
                K Y+  +P  +P E+L +      +   S  +  A    +  ++ +  ++ + ++
Sbjct: 304 KSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 254 FQQLK--ECQNTYYG---------IPY--IEHTAWQ--------------HRFSHLVGYG 286
              L+  E +  +           IP   +    W               H++S +    
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 287 AKYYSYLLS-----------------RAVASWIWQSYFEKDPFSRDSGDAYRLNCLSH-- 327
            +    + S                   V  +     F+ D       D Y  + + H  
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 328 GGGKPA------SKLVSD--FLQKDI-------TAESLTNSLMQELDKSSYEQ 365
              +          +  D  FL++ I        A     + +Q+L    Y+ 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKP 532



 Score = 33.3 bits (75), Expect = 0.16
 Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 29/135 (21%)

Query: 6   KNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCMEGLNNLFNKIYGITLQHVE 65
                 Y    I +           L  I+                LF  ++ +  + +E
Sbjct: 466 PPYLDQYFYSHIGH----------HLKNIE----------HPERMTLFRMVF-LDFRFLE 504

Query: 66  A---NNGELWSSDVYKLAVTHEKEGLLGYIY--CDFFERQKKPNQDCHFTIRGGRKLSNG 120
               ++   W++    L    + +    YI      +ER    N    F  +    L   
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAILDFLPKIEENLICS 562

Query: 121 SYQNPIVVLMLNLPT 135
            Y + ++ + L    
Sbjct: 563 KYTD-LLRIALMAED 576


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.17
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 14/44 (31%)

Query: 4  KKKNKKKGYILWDIAYVSNKAKRDKLKLTGIDFAPYFSLGTCME 47
          +K+  KK   L           +  LKL   D AP  ++   ME
Sbjct: 18 EKQALKK---L-----------QASLKLYADDSAPALAIKATME 47



 Score = 28.0 bits (61), Expect = 3.2
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 23/53 (43%)

Query: 98  ERQKKPNQDCHFTIRGGRKLSNGSYQNPIVVLMLNLPTPRWSSPCLLTPAMVD 150
           E+Q          ++   KL             L L     S+P L   A ++
Sbjct: 18  EKQ---------ALK---KLQAS----------LKLYADD-SAPALAIKATME 47


>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
           riken structural genomics/proteomics initiative, RSGI;
           HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
           PDB: 1ult_A* 1v26_A*
          Length = 541

 Score = 28.2 bits (64), Expect = 5.1
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 179 TDFAEVPSV---LMEFFASDPRVIKSFAKHYIGGQPMPEEMLQSF 220
           T  A VP+V   L ++  S    +K+  +  +GG   P  ++  F
Sbjct: 269 TFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF 313


>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A
           {Francisella tularensis}
          Length = 346

 Score = 27.6 bits (62), Expect = 7.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 104 NQDCHFTIRGGRKLSN 119
           NQ+ H  +RGG    N
Sbjct: 223 NQNGHVILRGGASGPN 238


>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited;
           beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP
           G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB:
           1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A
           1ofq_A 1ofr_A* 1og0_A*
          Length = 370

 Score = 27.3 bits (61), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 104 NQDCHFTIRGGRKLSN 119
           N+ C   +RGG+K +N
Sbjct: 241 NEHCFVILRGGKKGTN 256


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,645,348
Number of extensions: 325539
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 21
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)