Query psy4041
Match_columns 162
No_of_seqs 69 out of 71
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 23:51:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2297|consensus 100.0 3E-41 6.5E-46 298.2 7.6 109 45-162 1-112 (412)
2 KOG2297|consensus 79.6 1.3 2.9E-05 40.9 2.3 78 46-123 5-85 (412)
3 PF05997 Nop52: Nucleolar prot 69.2 1.7 3.7E-05 35.8 0.3 10 20-29 50-59 (217)
4 TIGR02742 TrbC_Ftype type-F co 60.2 2.7 6E-05 32.9 -0.1 42 39-97 3-45 (130)
5 PF14821 Thr_synth_N: Threonin 54.1 19 0.00042 25.4 3.4 48 71-118 10-62 (79)
6 PF14026 DUF4242: Protein of u 46.6 10 0.00023 26.8 1.0 26 124-160 38-63 (77)
7 PF12091 DUF3567: Protein of u 45.7 62 0.0014 24.4 5.1 62 36-99 6-73 (85)
8 PF12872 OST-HTH: OST-HTH/LOTU 39.6 34 0.00074 22.5 2.6 47 71-117 2-54 (74)
9 CHL00098 tsf elongation factor 37.1 31 0.00066 28.9 2.5 60 81-145 21-80 (200)
10 cd04951 GT1_WbdM_like This fam 36.0 34 0.00073 26.8 2.5 50 68-117 309-358 (360)
11 PHA02690 hypothetical protein; 34.0 53 0.0012 25.1 3.2 31 87-119 21-51 (90)
12 PRK12332 tsf elongation factor 31.7 40 0.00086 28.1 2.4 60 81-145 24-83 (198)
13 TIGR01417 PTS_I_fam phosphoeno 30.4 34 0.00074 32.3 2.0 61 17-85 317-379 (565)
14 PF13616 Rotamase_3: PPIC-type 29.6 76 0.0016 23.1 3.3 46 73-119 37-92 (117)
15 PF02954 HTH_8: Bacterial regu 28.7 37 0.00079 21.1 1.3 25 76-100 7-31 (42)
16 COG1080 PtsA Phosphoenolpyruva 28.3 27 0.0006 33.9 1.0 62 18-86 320-382 (574)
17 PF02767 DNA_pol3_beta_2: DNA 28.2 14 0.0003 26.7 -0.7 23 41-63 14-36 (116)
18 cd01191 INT_phiCTX_C phiCTX ph 26.4 75 0.0016 24.0 2.9 44 69-112 152-195 (196)
19 PF00627 UBA: UBA/TS-N domain; 24.9 1E+02 0.0022 18.5 2.8 21 77-97 17-37 (37)
20 cd00194 UBA Ubiquitin Associat 24.8 97 0.0021 18.2 2.6 22 76-97 15-36 (38)
21 smart00165 UBA Ubiquitin assoc 23.9 1E+02 0.0022 18.0 2.6 21 77-97 16-36 (37)
22 PF08359 TetR_C_4: YsiA-like p 23.9 1.7E+02 0.0036 20.9 4.2 46 68-120 88-133 (133)
23 cd05029 S-100A6 S-100A6: S-100 23.1 92 0.002 22.1 2.7 52 68-119 27-83 (88)
24 PF04255 DUF433: Protein of un 21.8 80 0.0017 20.8 2.0 12 50-61 10-21 (56)
25 PF08491 SE: Squalene epoxidas 21.7 1.1E+02 0.0023 27.1 3.3 59 26-85 52-111 (276)
26 COG4479 Uncharacterized protei 20.7 1.2E+02 0.0026 22.6 2.9 40 64-103 13-54 (74)
27 PF00570 HRDC: HRDC domain Blo 20.4 59 0.0013 21.0 1.2 43 73-117 25-68 (68)
28 cd08781 Death_UNC5-like Death 20.3 1.4E+02 0.003 21.3 3.2 26 72-97 2-30 (83)
29 PF04252 RNA_Me_trans: Predict 20.3 28 0.00061 29.5 -0.5 16 114-129 84-99 (196)
30 KOG1071|consensus 20.3 63 0.0014 29.8 1.7 63 80-145 65-127 (340)
No 1
>KOG2297|consensus
Probab=100.00 E-value=3e-41 Score=298.24 Aligned_cols=109 Identities=57% Similarity=0.898 Sum_probs=105.7
Q ss_pred eeccccCCcccccceeecccccccccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhhcccc-
Q psy4041 45 MNQKTEKPVLSGQRIKTRKRDEKEKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAGGLL- 123 (162)
Q Consensus 45 Msqk~eKP~L~G~RIKTRKRdek~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILiaGGlL- 123 (162)
|+++++||+|+||||||||||++++|||++|||+++|||++++||||+|+|+||+.|++||||||||.|||||++||++
T Consensus 1 ~~~k~~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~ 80 (412)
T KOG2297|consen 1 SSQKTEKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQ 80 (412)
T ss_pred CCccccCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccccCCCCcccceeeccccCceeEeecccchHhhhhccC
Q psy4041 124 --GKTLDPTTRAGVMVCRICKTTACIFEAQEDMQSLKNFEQ 162 (162)
Q Consensus 124 --Gs~~ddg~~~~~~~~~~~~t~~cIF~a~~d~e~ik~y~q 162 (162)
|+.+|||++ +|+||||+|++++|+|++|+|
T Consensus 81 pg~~~sddge~---------~t~~cvfda~e~~E~i~~~~q 112 (412)
T KOG2297|consen 81 PGGVKSDDGER---------HTSYCVFDAEEKREAIRNSVQ 112 (412)
T ss_pred CCCccccccCc---------cCceeEeecCchHHHHHHHHH
Confidence 899999997 588999999999999999986
No 2
>KOG2297|consensus
Probab=79.60 E-value=1.3 Score=40.90 Aligned_cols=78 Identities=8% Similarity=-0.179 Sum_probs=72.7
Q ss_pred eccccCCcccccceeecccccccccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHh---hhccc
Q psy4041 46 NQKTEKPVLSGQRIKTRKRDEKEKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDIL---IAGGL 122 (162)
Q Consensus 46 sqk~eKP~L~G~RIKTRKRdek~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdIL---iaGGl 122 (162)
.+|+.+|...+.+-|+++|+...+.++.-+-.++++.......+...+.++.++.+...+|.++...++.|. -.||.
T Consensus 5 ~~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~pg~~ 84 (412)
T KOG2297|consen 5 TEKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQPGGV 84 (412)
T ss_pred ccCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCCCCc
Confidence 578999999999999999999999999999999999999988899999999999999999999999999885 56887
Q ss_pred c
Q psy4041 123 L 123 (162)
Q Consensus 123 L 123 (162)
.
T Consensus 85 ~ 85 (412)
T KOG2297|consen 85 K 85 (412)
T ss_pred c
Confidence 7
No 3
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=69.20 E-value=1.7 Score=35.83 Aligned_cols=10 Identities=70% Similarity=1.248 Sum_probs=8.5
Q ss_pred hhhhcCCCcE
Q psy4041 20 LMWMCDKPEV 29 (162)
Q Consensus 20 ~~~~~~~~~~ 29 (162)
.|||||||.+
T Consensus 50 ~mWmsDkpl~ 59 (217)
T PF05997_consen 50 CMWMSDKPLV 59 (217)
T ss_pred HHHhcCCchh
Confidence 5999999964
No 4
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=60.23 E-value=2.7 Score=32.88 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=22.5
Q ss_pred eEEEEEeeccccCCcccccceeecccccccccC-ccchHHHHHHhhhcCCCCHHHHHHHH
Q psy4041 39 KFVSYCMNQKTEKPVLSGQRIKTRKRDEKEKYD-PAGFRDYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 39 ~~vs~~Msqk~eKP~L~G~RIKTRKRdek~K~D-P~~FRDaIv~gLn~~~gDLEavaK~L 97 (162)
.||||||....=|..+ + +.+++. |.+|| |+ .+|++.+.++.+
T Consensus 3 vFvS~SMP~~~Lk~l~---------~-~a~~~g~~~VlR-----G~--~~~~~~~T~~~i 45 (130)
T TIGR02742 3 VFVSFSMPEPLLKQLL---------D-QAEALGAPLVIR-----GL--LDNGFKATATRI 45 (130)
T ss_pred EEEEcCCCHHHHHHHH---------H-HHHHhCCeEEEe-----CC--CCCCHHHHHHHH
Confidence 4999999644222222 1 222333 66655 55 355676666654
No 5
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=54.08 E-value=19 Score=25.42 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=27.9
Q ss_pred CccchHHHHHHhhhcCCC-----CHHHHHHHHHhcCCcchhhhhhhhHHHHhh
Q psy4041 71 DPAGFRDYILSGLNAAGT-----DLEAVSKFLDIAGSKVDYRRYGEALFDILI 118 (162)
Q Consensus 71 DP~~FRDaIv~gLn~~~g-----DLEavaK~LD~aGSkLDYrRYge~LFdILi 118 (162)
.+..|.+||++||..-|| .+-.+.+.--..-..++|.--+-.++..++
T Consensus 10 ~~vsf~eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f~ 62 (79)
T PF14821_consen 10 PPVSFKEAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPFL 62 (79)
T ss_dssp CEE-HHHHHHH-SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHHC
T ss_pred CCcCHHHHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999987665 555555442123456777777766666666
No 6
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=46.59 E-value=10 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=18.5
Q ss_pred ccccCCCCcccceeeccccCceeEeecccchHhhhhc
Q psy4041 124 GKTLDPTTRAGVMVCRICKTTACIFEAQEDMQSLKNF 160 (162)
Q Consensus 124 Gs~~ddg~~~~~~~~~~~~t~~cIF~a~~d~e~ik~y 160 (162)
-+++.+.+. .-|||+.|| |-|+|+..
T Consensus 38 ~s~v~~d~~----------k~~Cly~Ap-~~eaV~~~ 63 (77)
T PF14026_consen 38 RSYVSEDDG----------KIFCLYEAP-DEEAVREH 63 (77)
T ss_pred EEEEecCCC----------eEEEEEECC-CHHHHHHH
Confidence 566665445 689999998 56667654
No 7
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=45.71 E-value=62 Score=24.44 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=43.7
Q ss_pred cCceEEEEEeeccccCCcc--cccceeeccccccccc-C---ccchHHHHHHhhhcCCCCHHHHHHHHHh
Q psy4041 36 GEDKFVSYCMNQKTEKPVL--SGQRIKTRKRDEKEKY-D---PAGFRDYILSGLNAAGTDLEAVSKFLDI 99 (162)
Q Consensus 36 ~~~~~vs~~Msqk~eKP~L--~G~RIKTRKRdek~K~-D---P~~FRDaIv~gLn~~~gDLEavaK~LD~ 99 (162)
.||-|+-..+.-..+.|.| +|.-|-- |+..|+-| | .+.||..|-.... ...+.|.|-.||++
T Consensus 6 nSd~y~VV~~~~~~~~~~l~~gGyEIVD-K~~~rEifi~G~~Ae~Fr~~V~~li~-~~Pt~EevDdfL~~ 73 (85)
T PF12091_consen 6 NSDNYCVVEFPPDAGHPALARGGYEIVD-KNARREIFIDGSWAEMFREDVQALIA-SEPTQEEVDDFLGG 73 (85)
T ss_pred cCCceEEEEecCCCCccchhcCCcEEee-cCCCceEEeCcHHHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Confidence 4677777776555556777 7888877 66666555 3 5679988766555 45699999999964
No 8
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=39.57 E-value=34 Score=22.45 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=29.8
Q ss_pred CccchHHHHHHhhhc-CC----CCHHHHHHHHHhcCCcchhhhhhh-hHHHHh
Q psy4041 71 DPAGFRDYILSGLNA-AG----TDLEAVSKFLDIAGSKVDYRRYGE-ALFDIL 117 (162)
Q Consensus 71 DP~~FRDaIv~gLn~-~~----gDLEavaK~LD~aGSkLDYrRYge-~LFdIL 117 (162)
+|..++..|.+.|+. ++ -.+..+...+-..-..+|++.||= .|-|.|
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll 54 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELL 54 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHH
Confidence 467788899999844 32 246666666665568999999997 555554
No 9
>CHL00098 tsf elongation factor Ts
Probab=37.14 E-value=31 Score=28.89 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=43.3
Q ss_pred HhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhhccccccccCCCCcccceeeccccCce
Q psy4041 81 SGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAGGLLGKTLDPTTRAGVMVCRICKTTA 145 (162)
Q Consensus 81 ~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILiaGGlLGs~~ddg~~~~~~~~~~~~t~~ 145 (162)
+.|++++||+|..-.+|-..|-..-..|-+- .-++|.++.++..+.+..++|--.|.++|
T Consensus 21 ~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r-----~~~eG~V~~yiH~~gk~gvlVeln~ETDf 80 (200)
T CHL00098 21 KALQEANGDFEKALESLRQKGLASANKKSTR-----ITTEGLIESYIHTGGKLGVLVEINCETDF 80 (200)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhhHHHHhhcc-----ccccCeEEEEEecCCCEEEEEEEecCccc
Confidence 5688899999999999988886666666443 34678778888654455566666676665
No 10
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=35.99 E-value=34 Score=26.83 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=36.0
Q ss_pred cccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHh
Q psy4041 68 EKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDIL 117 (162)
Q Consensus 68 ~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdIL 117 (162)
...|+..+.++|.+.++......+...+......+..++++.++.+.+++
T Consensus 309 ~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 309 PISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 45788999999999885544344444444444567788999999988875
No 11
>PHA02690 hypothetical protein; Provisional
Probab=34.04 E-value=53 Score=25.09 Aligned_cols=31 Identities=35% Similarity=0.496 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhh
Q psy4041 87 GTDLEAVSKFLDIAGSKVDYRRYGEALFDILIA 119 (162)
Q Consensus 87 ~gDLEavaK~LD~aGSkLDYrRYge~LFdILia 119 (162)
.+=|||+-..| +||+.--|+--.-|||.+++
T Consensus 21 rrYLeAIqrhl--Egs~plLR~~~RlLfDL~lT 51 (90)
T PHA02690 21 RRYLEAIQRHL--EGSTPLLRQMWRLLFDLLLT 51 (90)
T ss_pred hHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHH
Confidence 36799999999 89999999999999998875
No 12
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=31.70 E-value=40 Score=28.07 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=41.1
Q ss_pred HhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhhccccccccCCCCcccceeeccccCce
Q psy4041 81 SGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAGGLLGKTLDPTTRAGVMVCRICKTTA 145 (162)
Q Consensus 81 ~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILiaGGlLGs~~ddg~~~~~~~~~~~~t~~ 145 (162)
+.|++++||+|..-.+|-..|-..--.|-+ -.-+.|+++.++..+.+...++--.|.|+|
T Consensus 24 ~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~-----r~~~eG~i~~~i~~~~~~~~lve~n~ETDF 83 (198)
T PRK12332 24 KALEEANGDMEKAIEWLREKGLAKAAKKAG-----RVAAEGLVGSYIHTGGRIGVLVELNCETDF 83 (198)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhhHHHHhcc-----ccccCceEEEEEecCCCEEEEEEEeccCCc
Confidence 568889999999999998877655444333 345667776666543344566666787775
No 13
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=30.39 E-value=34 Score=32.28 Aligned_cols=61 Identities=28% Similarity=0.276 Sum_probs=43.3
Q ss_pred heehhhhcCCCcEEEEEEecCceEEEEEeeccccCCccc--ccceeecccccccccCccchHHHHHHhhhc
Q psy4041 17 TTVLMWMCDKPEVVIMYQVGEDKFVSYCMNQKTEKPVLS--GQRIKTRKRDEKEKYDPAGFRDYILSGLNA 85 (162)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~vs~~Msqk~eKP~L~--G~RIKTRKRdek~K~DP~~FRDaIv~gLn~ 85 (162)
..++-+|..+|-++=..-+|.||.++|--..+.+-|-|+ |.|+=- -.|..|+.+|-..+..
T Consensus 317 ~~i~~~~~~~pv~iRtlDig~DK~~~~~~~~~E~NP~LG~RgiR~~l--------~~~~lf~~QlrAI~ra 379 (565)
T TIGR01417 317 KTVLEAMESDAVIVRTLDIGGDKELPYLNFPKEENPFLGYRAIRLAL--------EREEILRTQLRAILRA 379 (565)
T ss_pred HHHHHHhCCCceEEECCCCCCcccccccCCCCCCCccccchhhhhcc--------cCHHHHHHHHHHHHHH
Confidence 346778999997777889999999998633456678776 444332 1488999887665543
No 14
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=29.65 E-value=76 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=33.1
Q ss_pred cchHHHHHHhhhcCCCCHHHHHHHHH------hcCCcchhhhh----hhhHHHHhhh
Q psy4041 73 AGFRDYILSGLNAAGTDLEAVSKFLD------IAGSKVDYRRY----GEALFDILIA 119 (162)
Q Consensus 73 ~~FRDaIv~gLn~~~gDLEavaK~LD------~aGSkLDYrRY----ge~LFdILia 119 (162)
..-.|.|++.|+ .|.||+++|+..- ..|.+|.|.++ ...|.+.++.
T Consensus 37 k~~a~~i~~~l~-~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~~ 92 (117)
T PF13616_consen 37 KKKADSILKQLK-SGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAFS 92 (117)
T ss_dssp HHHHHHHHHHHH-CTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHHc
Confidence 567899999999 7789999999875 24566887773 3444444443
No 15
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=28.74 E-value=37 Score=21.08 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=19.5
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHhc
Q psy4041 76 RDYILSGLNAAGTDLEAVSKFLDIA 100 (162)
Q Consensus 76 RDaIv~gLn~~~gDLEavaK~LD~a 100 (162)
++.|.+.|..++|+...+|+.|.-.
T Consensus 7 ~~~i~~aL~~~~gn~~~aA~~Lgis 31 (42)
T PF02954_consen 7 KQLIRQALERCGGNVSKAARLLGIS 31 (42)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHTS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCCC
Confidence 4667888999999999999999543
No 16
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=28.26 E-value=27 Score=33.88 Aligned_cols=62 Identities=31% Similarity=0.388 Sum_probs=48.1
Q ss_pred eehhhhcCCCcEEEEEEecCceEEEEEeeccccCCcccccceeecccccccccC-ccchHHHHHHhhhcC
Q psy4041 18 TVLMWMCDKPEVVIMYQVGEDKFVSYCMNQKTEKPVLSGQRIKTRKRDEKEKYD-PAGFRDYILSGLNAA 86 (162)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~vs~~Msqk~eKP~L~G~RIKTRKRdek~K~D-P~~FRDaIv~gLn~~ 86 (162)
.|+-||.+||-++=..-+|.||-++|--..+.+-|-|+= |-+.--.| |..||.||=..|-..
T Consensus 320 ~vlea~~g~pviiRTlDiGGDK~lpyl~lp~E~NPfLG~-------RaIRl~l~~~~if~tQLRAilRAS 382 (574)
T COG1080 320 AVLEAMGGKPVIIRTLDIGGDKPLPYLNLPKEENPFLGY-------RAIRLSLERPEIFRTQLRAILRAS 382 (574)
T ss_pred HHHHHcCCCceEEEecccCCCCcCCCCCCccccCchhhh-------HHHHHhhccHHHHHHHHHHHHHhh
Confidence 578999999999999999999999987444567888842 22333344 789999999888773
No 17
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=28.23 E-value=14 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=17.4
Q ss_pred EEEEeeccccCCcccccceeecc
Q psy4041 41 VSYCMNQKTEKPVLSGQRIKTRK 63 (162)
Q Consensus 41 vs~~Msqk~eKP~L~G~RIKTRK 63 (162)
|+|++|....+|.|+|+.++...
T Consensus 14 v~fa~s~d~~r~~L~Gv~~~~~~ 36 (116)
T PF02767_consen 14 VAFAASKDESRPILNGVLFEIEN 36 (116)
T ss_dssp HGGGS-SSTTSGGGGEEEEEEET
T ss_pred eeEEEecCCCCceeeeEEEEEEC
Confidence 46777776779999999999743
No 18
>cd01191 INT_phiCTX_C phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various phage and bacterial integrases, including those similar to phage integrases: Bordetella and Pseudomonas phiCTX; E. coli Rac, Qin, and Shiga toxin 2 933W; and Salmonella typhimurium LT2 Gifsy-2 and Fels-1; and a putative pore-forming cytotoxin integrase from Vibrio parahaemolyticus O3:K6.
Probab=26.44 E-value=75 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=35.6
Q ss_pred ccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhh
Q psy4041 69 KYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEA 112 (162)
Q Consensus 69 K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~ 112 (162)
++-|-.||......+.+.+.+++.+++-|--+.-+.-|++|+-.
T Consensus 152 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~~~~~Y~~~ 195 (196)
T cd01191 152 YRNPYQMRHTFASWMLTAGANPAFIADQMGHKSAEMVFKHYGKW 195 (196)
T ss_pred cCCcccchHHHHHHHHHCCCCHHHHHHHhCCCchhhHHHHHhcc
Confidence 45688999999999988889999999999555445678899853
No 19
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=24.90 E-value=1e+02 Score=18.45 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=13.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHH
Q psy4041 77 DYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 77 DaIv~gLn~~~gDLEavaK~L 97 (162)
+...+.|..+++|+|....+|
T Consensus 17 ~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 17 EQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHhC
Confidence 344556666777887776665
No 20
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=24.80 E-value=97 Score=18.15 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=15.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHH
Q psy4041 76 RDYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 76 RDaIv~gLn~~~gDLEavaK~L 97 (162)
++.++..|..+++|++....+|
T Consensus 15 ~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 15 REEARKALRATNNNVERAVEWL 36 (38)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 5666667777777877776665
No 21
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=23.92 E-value=1e+02 Score=18.02 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=12.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHH
Q psy4041 77 DYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 77 DaIv~gLn~~~gDLEavaK~L 97 (162)
+.+++.|..+++|++....+|
T Consensus 16 ~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 16 EEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 355556666667777665554
No 22
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=23.92 E-value=1.7e+02 Score=20.88 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=25.7
Q ss_pred cccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhhc
Q psy4041 68 EKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAG 120 (162)
Q Consensus 68 ~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILiaG 120 (162)
...||..-+..|+-.++ ..+.+.+- .+.+.|....++.++++++-|
T Consensus 88 ~d~d~~~~~~~i~G~i~------~~v~~w~~-~~~~~~l~~~~~~~~~l~l~g 133 (133)
T PF08359_consen 88 KDLDPELAARFIFGMIN------HTVLDWVL-NDGKFDLEDIAEELMDLLLNG 133 (133)
T ss_dssp TT--HHHHHHHHHHHHH------HHHHHHHH-TTT-S-CGGGHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHH------HHHHHHHh-cCCCCCHHHHHHHHHHHhhcC
Confidence 33445555554444443 12334443 477899999999999999876
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=23.09 E-value=92 Score=22.15 Aligned_cols=52 Identities=12% Similarity=0.253 Sum_probs=35.7
Q ss_pred cccCccchHHHHHHh--hhc--CCCCHHHHHHHHHhcCC-cchhhhhhhhHHHHhhh
Q psy4041 68 EKYDPAGFRDYILSG--LNA--AGTDLEAVSKFLDIAGS-KVDYRRYGEALFDILIA 119 (162)
Q Consensus 68 ~K~DP~~FRDaIv~g--Ln~--~~gDLEavaK~LD~aGS-kLDYrRYge~LFdILia 119 (162)
-..+..-||+.+-+. +.+ ...+++.+-+.+|..++ +++|..|-..+..+.+|
T Consensus 27 g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 27 NTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred CEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 345566788776431 222 34578889999998775 89999987777766654
No 24
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.84 E-value=80 Score=20.82 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=7.7
Q ss_pred cCCcccccceee
Q psy4041 50 EKPVLSGQRIKT 61 (162)
Q Consensus 50 eKP~L~G~RIKT 61 (162)
-+|++.|.||..
T Consensus 10 G~P~i~GTRI~v 21 (56)
T PF04255_consen 10 GQPVIRGTRIPV 21 (56)
T ss_dssp G--EETTSS-BH
T ss_pred CcceEcCceecH
Confidence 489999999987
No 25
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.67 E-value=1.1e+02 Score=27.06 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCcEEEEEEecCceEEEEEeecccc-CCcccccceeecccccccccCccchHHHHHHhhhc
Q psy4041 26 KPEVVIMYQVGEDKFVSYCMNQKTE-KPVLSGQRIKTRKRDEKEKYDPAGFRDYILSGLNA 85 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~vs~~Msqk~e-KP~L~G~RIKTRKRdek~K~DP~~FRDaIv~gLn~ 85 (162)
+|--+++||+|+..- ..-.--..+ -|+.++.-+|.-=++...+.=|+..|+++.+.+++
T Consensus 52 ~~~pil~YqI~~~et-R~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~ 111 (276)
T PF08491_consen 52 KPGPILLYQISSNET-RVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALED 111 (276)
T ss_pred CCCcEEEEEcCCCce-EEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhcc
Confidence 477889999998742 111111223 57666656666666777788888888888887765
No 26
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=1.2e+02 Score=22.61 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=28.2
Q ss_pred cccccccCccchHHHHHHhh--hcCCCCHHHHHHHHHhcCCc
Q psy4041 64 RDEKEKYDPAGFRDYILSGL--NAAGTDLEAVSKFLDIAGSK 103 (162)
Q Consensus 64 Rdek~K~DP~~FRDaIv~gL--n~~~gDLEavaK~LD~aGSk 103 (162)
|+-|.+=|-+.|++.+.+-. .....|++.++.+|...++=
T Consensus 13 R~Pk~~d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f 54 (74)
T COG4479 13 RNPKSKDDKTELANLAFDDHSFPKHTDDFHEISDYLETNADF 54 (74)
T ss_pred cCCCCCChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCc
Confidence 45555556677788777643 34558999999999876653
No 27
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=20.42 E-value=59 Score=21.04 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=27.1
Q ss_pred cchHHHHHHhhhc-CCCCHHHHHHHHHhcCCcchhhhhhhhHHHHh
Q psy4041 73 AGFRDYILSGLNA-AGTDLEAVSKFLDIAGSKVDYRRYGEALFDIL 117 (162)
Q Consensus 73 ~~FRDaIv~gLn~-~~gDLEavaK~LD~aGSkLDYrRYge~LFdIL 117 (162)
.+|.|..+..+.. .+.+.+++.+.- .=++--.++||+.+.+++
T Consensus 25 ~Il~~~~L~~ia~~~P~s~~~L~~i~--g~~~~~~~~~g~~il~~I 68 (68)
T PF00570_consen 25 RILSDEALLEIAKRLPTSIEELLQIP--GMGKRKVRKYGDEILEII 68 (68)
T ss_dssp HHS-HHHHHHHHHH--SSHHHHHTST--TCGHHHHHHCHHHHHHHH
T ss_pred cccCHHHHHHHHHhCCCCHHHHHHcc--CCCHHHHHHHHHHHHhhC
Confidence 4677777777766 567888766542 123345679999998874
No 28
>cd08781 Death_UNC5-like Death domain found in Uncoordinated-5 homolog family. Death Domain (DD) found in Uncoordinated-5 (UNC-5) homolog family, which includes Unc5A, B, C and D in vertebrates. UNC5 proteins are receptors for secreted netrins (netrin-1, -3 and -4) that are involved in diverse processes like axonal guidance, neuronal migration, blood vessel patterning, and apoptosis. They are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit
Probab=20.35 E-value=1.4e+02 Score=21.27 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.2
Q ss_pred ccchHHHHHHhhhcC---CCCHHHHHHHH
Q psy4041 72 PAGFRDYILSGLNAA---GTDLEAVSKFL 97 (162)
Q Consensus 72 P~~FRDaIv~gLn~~---~gDLEavaK~L 97 (162)
|-.-|..|-..|+.+ |+|...+|..|
T Consensus 2 p~~~r~~Lc~~LD~~~~~g~dWr~LA~~L 30 (83)
T cd08781 2 PYSIRQKLCSSLDPPNPRGNDWRLLAKKL 30 (83)
T ss_pred CHHHHHHHHHHcCCCCCCCCCHHHHHHHh
Confidence 456688888888864 58999999999
No 29
>PF04252 RNA_Me_trans: Predicted SAM-dependent RNA methyltransferase; InterPro: IPR007364 This family of proteins are predicted to be alpha/beta-knot SAM-dependent RNA methyltransferases [].
Probab=20.32 E-value=28 Score=29.49 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=13.7
Q ss_pred HHHhhhccccccccCC
Q psy4041 114 FDILIAGGLLGKTLDP 129 (162)
Q Consensus 114 FdILiaGGlLGs~~dd 129 (162)
||+++.||+||.-+..
T Consensus 84 fd~fvfGGILGD~PPr 99 (196)
T PF04252_consen 84 FDYFVFGGILGDHPPR 99 (196)
T ss_pred ccEEEECcccCCCCCC
Confidence 8999999999876654
No 30
>KOG1071|consensus
Probab=20.26 E-value=63 Score=29.75 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhhccccccccCCCCcccceeeccccCce
Q psy4041 80 LSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAGGLLGKTLDPTTRAGVMVCRICKTTA 145 (162)
Q Consensus 80 v~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILiaGGlLGs~~ddg~~~~~~~~~~~~t~~ 145 (162)
=+.|.+++|||+...++|-.++-+.-. .-|+-+=.---+=||+|-+++||.. +++=-.|.|+|
T Consensus 65 KkALee~~gDl~~A~~~L~k~aqk~g~-~~A~K~~sR~t~eGlIgv~~~~~r~--vlvElNCETDF 127 (340)
T KOG1071|consen 65 KKALEECGGDLVLAEEWLHKKAQKEGW-SKAAKKASRTTKEGLIGVLQEDGRT--VLVELNCETDF 127 (340)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHhhh-hHHhhhcccccccceeEEEEeCCeE--EEEEeecccch
Confidence 456788889999998888776655433 2344444444566788999998733 88888898876
Done!