Query psy4041
Match_columns 162
No_of_seqs 69 out of 71
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 23:52:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jy5_A Ubiquilin-1; UBA, alter 52.4 8.4 0.00029 24.5 2.2 31 68-98 17-49 (52)
2 2bwb_A Ubiquitin-like protein 52.1 8.7 0.0003 24.0 2.2 25 73-97 17-43 (46)
3 2knz_A Ubiquilin-4; cytoplasm, 51.9 11 0.00039 23.9 2.8 30 70-99 18-49 (53)
4 1vej_A Riken cDNA 4931431F19; 48.6 13 0.00043 25.9 2.7 31 68-98 34-66 (74)
5 1wr1_B Ubiquitin-like protein 44.5 13 0.00044 24.5 2.1 32 68-99 22-55 (58)
6 2dah_A Ubiquilin-3; UBA domain 40.4 21 0.00071 23.0 2.6 33 68-100 14-48 (54)
7 1wud_A ATP-dependent DNA helic 31.8 19 0.00063 24.6 1.4 43 74-119 37-81 (89)
8 2kv2_A Bloom syndrome protein; 31.5 17 0.00059 24.5 1.2 45 73-119 30-75 (85)
9 2rhf_A DNA helicase RECQ; HRDC 28.5 18 0.00062 23.7 0.9 43 74-118 29-72 (77)
10 4fu3_A Regulation of nuclear P 27.7 52 0.0018 23.2 3.3 43 70-119 4-46 (135)
11 2cwb_A Chimera of immunoglobul 25.9 42 0.0014 24.7 2.6 32 68-99 71-104 (108)
12 2rrd_A BLM HRDC domain, HRDC d 25.4 28 0.00095 24.6 1.4 43 74-119 46-90 (101)
13 1abv_A Delta subunit of the F1 24.9 29 0.00098 24.3 1.4 17 107-123 8-24 (134)
14 1z96_A DNA-damage, UBA-domain 24.3 70 0.0024 18.1 2.9 20 78-97 20-39 (40)
15 1ify_A HHR23A, UV excision rep 23.9 56 0.0019 20.2 2.5 22 76-97 22-43 (49)
16 3fro_A GLGA glycogen synthase; 22.9 67 0.0023 24.7 3.3 50 68-117 378-427 (439)
17 2dna_A Unnamed protein product 22.2 90 0.0031 21.3 3.5 33 68-100 24-58 (67)
18 2ooa_A E3 ubiquitin-protein li 20.8 79 0.0027 21.0 2.9 19 87-105 22-40 (52)
19 1dv0_A DNA repair protein HHR2 20.1 73 0.0025 19.7 2.5 27 72-98 13-40 (47)
No 1
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=52.44 E-value=8.4 Score=24.49 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=23.9
Q ss_pred cccCccch--HHHHHHhhhcCCCCHHHHHHHHH
Q psy4041 68 EKYDPAGF--RDYILSGLNAAGTDLEAVSKFLD 98 (162)
Q Consensus 68 ~K~DP~~F--RDaIv~gLn~~~gDLEavaK~LD 98 (162)
++.---+| |++.++.|..++||+|....+|-
T Consensus 17 ~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 17 EQLSAMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33444678 88888899888889998888884
No 2
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=52.11 E-value=8.7 Score=24.02 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred cch--HHHHHHhhhcCCCCHHHHHHHH
Q psy4041 73 AGF--RDYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 73 ~~F--RDaIv~gLn~~~gDLEavaK~L 97 (162)
-+| |++.++.|..++||+|....+|
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456 5677888888888888877776
No 3
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=51.93 E-value=11 Score=23.86 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=22.9
Q ss_pred cCccch--HHHHHHhhhcCCCCHHHHHHHHHh
Q psy4041 70 YDPAGF--RDYILSGLNAAGTDLEAVSKFLDI 99 (162)
Q Consensus 70 ~DP~~F--RDaIv~gLn~~~gDLEavaK~LD~ 99 (162)
.---+| |++.++.|..++||+|....+|-.
T Consensus 18 L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 18 LNSMGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334567 788888888888888888888854
No 4
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.63 E-value=13 Score=25.87 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=24.1
Q ss_pred cccCccch--HHHHHHhhhcCCCCHHHHHHHHH
Q psy4041 68 EKYDPAGF--RDYILSGLNAAGTDLEAVSKFLD 98 (162)
Q Consensus 68 ~K~DP~~F--RDaIv~gLn~~~gDLEavaK~LD 98 (162)
++.-.-+| |+++++.|..+.||+|....+|-
T Consensus 34 ~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 34 EELKALGFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44445678 78888999988899998888874
No 5
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.49 E-value=13 Score=24.52 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=23.4
Q ss_pred cccCccch--HHHHHHhhhcCCCCHHHHHHHHHh
Q psy4041 68 EKYDPAGF--RDYILSGLNAAGTDLEAVSKFLDI 99 (162)
Q Consensus 68 ~K~DP~~F--RDaIv~gLn~~~gDLEavaK~LD~ 99 (162)
++.-.-+| |++.++.|..+.||+|....+|-+
T Consensus 22 ~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 22 RQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33444567 677888888888899888888753
No 6
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.39 E-value=21 Score=23.02 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=24.3
Q ss_pred cccCccch--HHHHHHhhhcCCCCHHHHHHHHHhc
Q psy4041 68 EKYDPAGF--RDYILSGLNAAGTDLEAVSKFLDIA 100 (162)
Q Consensus 68 ~K~DP~~F--RDaIv~gLn~~~gDLEavaK~LD~a 100 (162)
++.-.-+| +++.++.|..++||+|....+|-+.
T Consensus 14 ~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 14 EQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34444578 4567899999899999988888643
No 7
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=31.82 E-value=19 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=31.3
Q ss_pred chHHHHHHhhhc-CCCCHHHHHHHHHhcC-CcchhhhhhhhHHHHhhh
Q psy4041 74 GFRDYILSGLNA-AGTDLEAVSKFLDIAG-SKVDYRRYGEALFDILIA 119 (162)
Q Consensus 74 ~FRDaIv~gLn~-~~gDLEavaK~LD~aG-SkLDYrRYge~LFdILia 119 (162)
+|.|+.+..+.. .+.+++++.+. .| +.--.+|||+.|.+++=.
T Consensus 37 If~D~tL~eiA~~~P~t~~eL~~i---~Gvg~~k~~~yG~~~l~~I~~ 81 (89)
T 1wud_A 37 VFNDATLIEMAEQMPITASEMLSV---NGVGMRKLERFGKPFMALIRA 81 (89)
T ss_dssp HCCHHHHHHHHHHCCCSHHHHHTS---TTCCHHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHhCCCCHHHHhhC---CCCCHHHHHHHHHHHHHHHHH
Confidence 689998887776 57788886542 22 334678999999998743
No 8
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=31.52 E-value=17 Score=24.51 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.8
Q ss_pred cchHHHHHHhhhc-CCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhh
Q psy4041 73 AGFRDYILSGLNA-AGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIA 119 (162)
Q Consensus 73 ~~FRDaIv~gLn~-~~gDLEavaK~LD~aGSkLDYrRYge~LFdILia 119 (162)
-+|.|+.+..+.. .+.+++++.+.= .-| .--.+|||+.|.+++-.
T Consensus 30 ~If~d~tL~~iA~~~P~t~~eL~~i~-Gvg-~~k~~~yG~~~l~~i~~ 75 (85)
T 2kv2_A 30 NIFNTVTLKKLAESLSSDPEVLLQID-GVT-EDKLEKYGAEVISVLQK 75 (85)
T ss_dssp HHCCHHHHHHHHHHCCSCHHHHHTSS-SCC-HHHHHHTHHHHHHHHHH
T ss_pred eeECHHHHHHHHHhCCCCHHHHhhCC-CCC-HHHHHHHHHHHHHHHHH
Confidence 3699998888877 567888755321 112 33788999999998754
No 9
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=28.50 E-value=18 Score=23.74 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=29.8
Q ss_pred chHHHHHHhhhc-CCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhh
Q psy4041 74 GFRDYILSGLNA-AGTDLEAVSKFLDIAGSKVDYRRYGEALFDILI 118 (162)
Q Consensus 74 ~FRDaIv~gLn~-~~gDLEavaK~LD~aGSkLDYrRYge~LFdILi 118 (162)
+|.|+.+..+.. .+.+++++.+.= --+.--.+|||+.|.+++=
T Consensus 29 I~~d~~L~~iA~~~P~t~~eL~~i~--Gvg~~k~~~yG~~~l~~i~ 72 (77)
T 2rhf_A 29 VFTNATLEALAARQPRTLAELAEVP--GLGEKRIEAYGERILDAIN 72 (77)
T ss_dssp HCCHHHHHHHHHHCCCSHHHHTTST--TTCHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHhCCCCHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Confidence 589998887776 567888754321 1133456899999999873
No 10
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=27.74 E-value=52 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=31.2
Q ss_pred cCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhh
Q psy4041 70 YDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIA 119 (162)
Q Consensus 70 ~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILia 119 (162)
|++..|.+. ++.|+........++.++ ++++++++.+-+++.-
T Consensus 4 f~~~~l~~~-L~~L~~s~~sI~~~s~w~------l~~~~~a~~iv~~i~~ 46 (135)
T 4fu3_A 4 FSESALEKK-LSELSNSQQSVQTLSLWL------IHHRKHAGPIVSVWHR 46 (135)
T ss_dssp CCHHHHHHH-HHHCCSSTTHHHHHHHHH------HHTGGGHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHccccHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 555666544 467776677888888887 6789999998887653
No 11
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=25.93 E-value=42 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=24.6
Q ss_pred cccCccch--HHHHHHhhhcCCCCHHHHHHHHHh
Q psy4041 68 EKYDPAGF--RDYILSGLNAAGTDLEAVSKFLDI 99 (162)
Q Consensus 68 ~K~DP~~F--RDaIv~gLn~~~gDLEavaK~LD~ 99 (162)
++.-.-+| |+..++.|..++||+|+...+|-+
T Consensus 71 ~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 71 QQLRDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 55556778 568888888888899888888754
No 12
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=25.44 E-value=28 Score=24.64 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=30.8
Q ss_pred chHHHHHHhhhc-CCCCHHHHHHHHHhcC-CcchhhhhhhhHHHHhhh
Q psy4041 74 GFRDYILSGLNA-AGTDLEAVSKFLDIAG-SKVDYRRYGEALFDILIA 119 (162)
Q Consensus 74 ~FRDaIv~gLn~-~~gDLEavaK~LD~aG-SkLDYrRYge~LFdILia 119 (162)
+|.|+.+..+.. .+.+++++.+. .| +.--.+|||+.|.+++-.
T Consensus 46 If~D~tL~eiA~~~P~t~~eL~~I---~Gvg~~k~~~yG~~~L~~I~~ 90 (101)
T 2rrd_A 46 IFNTVTLKKLAESLSSDPEVLLQI---DGVTEDKLEKYGAEVISVLQK 90 (101)
T ss_dssp HCCHHHHHHHHHHCCCCHHHHHTS---TTCCHHHHHHTHHHHHHHHHH
T ss_pred eECHHHHHHHHHhCCCCHHHHhhC---CCCCHHHHHHHHHHHHHHHHH
Confidence 689998888777 57788886543 12 233456999999998754
No 13
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=24.86 E-value=29 Score=24.35 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.2
Q ss_pred hhhhhhHHHHhhhcccc
Q psy4041 107 RRYGEALFDILIAGGLL 123 (162)
Q Consensus 107 rRYge~LFdILiaGGlL 123 (162)
+|||.+||++-...|.+
T Consensus 8 ~rYA~AL~~~A~e~~~l 24 (134)
T 1abv_A 8 RPYAKAAFDFAVEHQSV 24 (134)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHhcCCH
Confidence 79999999998887777
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.30 E-value=70 Score=18.11 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=9.8
Q ss_pred HHHHhhhcCCCCHHHHHHHH
Q psy4041 78 YILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 78 aIv~gLn~~~gDLEavaK~L 97 (162)
...+.|..+++|+|....+|
T Consensus 20 ~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 20 EAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 33444555555555544443
No 15
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.88 E-value=56 Score=20.24 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHhhhcCCCCHHHHHHHH
Q psy4041 76 RDYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 76 RDaIv~gLn~~~gDLEavaK~L 97 (162)
|++.+..|..+++|+|....+|
T Consensus 22 ~~~a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 22 RERVVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHHHHHTTTSCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 3445555555555665555555
No 16
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=22.87 E-value=67 Score=24.65 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=35.5
Q ss_pred cccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHh
Q psy4041 68 EKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDIL 117 (162)
Q Consensus 68 ~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdIL 117 (162)
...||..+.++|.+.++......+...+.-.....+.++.+.++.+-+++
T Consensus 378 ~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 427 (439)
T 3fro_A 378 KAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAY 427 (439)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 45689999999999998434455555444333336688888888888776
No 17
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.22 E-value=90 Score=21.26 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=24.3
Q ss_pred cccCccch--HHHHHHhhhcCCCCHHHHHHHHHhc
Q psy4041 68 EKYDPAGF--RDYILSGLNAAGTDLEAVSKFLDIA 100 (162)
Q Consensus 68 ~K~DP~~F--RDaIv~gLn~~~gDLEavaK~LD~a 100 (162)
+..-.-+| |++.++.|..+.||+|+...+|-+.
T Consensus 24 ~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 24 ECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44445567 6677888888889999888888653
No 18
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=20.80 E-value=79 Score=21.02 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHHhcCCcch
Q psy4041 87 GTDLEAVSKFLDIAGSKVD 105 (162)
Q Consensus 87 ~gDLEavaK~LD~aGSkLD 105 (162)
|=|-+++-+.|.++.+++|
T Consensus 22 GFsr~~ai~AL~~a~nnve 40 (52)
T 2ooa_A 22 GYAFEEVKRALEIAQNNVE 40 (52)
T ss_dssp TCCHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 4444444445544444443
No 19
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=20.10 E-value=73 Score=19.70 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.4
Q ss_pred ccch-HHHHHHhhhcCCCCHHHHHHHHH
Q psy4041 72 PAGF-RDYILSGLNAAGTDLEAVSKFLD 98 (162)
Q Consensus 72 P~~F-RDaIv~gLn~~~gDLEavaK~LD 98 (162)
--+| |+..++.|..+++|.|..+.+|=
T Consensus 13 ~mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 13 ALGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp TTTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3455 46777999999999999998883
Done!