Query psy4041
Match_columns 162
No_of_seqs 69 out of 71
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 23:52:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4041.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4041hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vi0a2 a.121.1.1 (A:78-194) H 62.3 5.2 0.00038 25.0 4.2 45 69-120 69-113 (117)
2 d1abva_ a.70.1.1 (A:) N-termin 39.8 5.4 0.00039 25.8 1.4 17 107-123 8-24 (105)
3 d2bisa1 c.87.1.8 (A:1-437) Gly 35.1 13 0.00096 26.8 3.1 50 68-117 376-425 (437)
4 d1ok7a2 d.131.1.1 (A:123-244) 31.4 3.2 0.00023 27.8 -0.9 22 41-62 20-41 (122)
5 d1f44a2 d.163.1.1 (A:130-343) 30.8 23 0.0017 22.4 3.4 41 68-111 155-197 (214)
6 d1vpka2 d.131.1.1 (A:121-243) 28.7 3.9 0.00029 27.6 -0.8 23 41-63 21-43 (123)
7 d1ofcx1 a.4.1.3 (X:799-850) SA 28.3 6.2 0.00045 24.5 0.2 37 78-115 9-46 (52)
8 d1x3ha2 g.39.1.3 (A:43-74) Leu 26.2 8.6 0.00063 22.0 0.5 9 137-145 1-9 (32)
9 d1veja1 a.5.2.1 (A:8-68) 49314 26.2 25 0.0018 22.2 2.9 32 66-97 25-58 (61)
10 d2hbka1 a.60.8.4 (A:421-516) E 25.1 15 0.0011 23.4 1.7 44 73-118 42-86 (96)
11 d1wvka_ g.82.1.1 (A:) Expresse 25.0 14 0.0011 25.1 1.6 22 124-145 34-55 (86)
12 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 24.4 29 0.0021 21.2 2.8 24 76-99 23-46 (50)
13 d1pn0a1 c.3.1.2 (A:1-240,A:342 23.7 2.3 0.00017 30.3 -3.0 16 108-123 2-17 (360)
14 d1umqa_ a.4.1.12 (A:) Photosyn 22.8 17 0.0012 21.9 1.5 29 76-104 22-50 (60)
15 d1de4c1 a.48.2.1 (C:609-756) T 21.6 14 0.00099 26.3 0.9 12 104-115 1-12 (148)
16 d2daha1 a.5.2.1 (A:8-48) Ubiqu 20.2 31 0.0022 20.1 2.2 23 76-98 17-39 (41)
No 1
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=62.27 E-value=5.2 Score=25.00 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=31.2
Q ss_pred ccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhhhc
Q psy4041 69 KYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAG 120 (162)
Q Consensus 69 K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdILiaG 120 (162)
..||..++..|+..++- -+...+- .+...|....++.++++++-|
T Consensus 69 d~d~~~~a~~i~g~i~~------~~~~w~~-~~~~~~~~~~~~~~~~~~~~G 113 (117)
T d1vi0a2 69 GLDVRLARQMIFGTIDE------TVTTWVM-NDQKYDLVALSNSVLELLVSG 113 (117)
T ss_dssp TCCHHHHHHHHHHHHHH------HHHHHHH-TTTCSCGGGGHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH------HHHHHHh-cCCCCCHHHHHHHHHHHHHHH
Confidence 46677777776665531 1122332 588899999999999999876
No 2
>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}
Probab=39.81 E-value=5.4 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.4
Q ss_pred hhhhhhHHHHhhhcccc
Q psy4041 107 RRYGEALFDILIAGGLL 123 (162)
Q Consensus 107 rRYge~LFdILiaGGlL 123 (162)
||||.+||++-.-.|.+
T Consensus 8 rrYAkALf~lA~e~~~l 24 (105)
T d1abva_ 8 RPYAKAAFDFAVEHQSV 24 (105)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCCh
Confidence 89999999999888877
No 3
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=35.10 E-value=13 Score=26.78 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=35.0
Q ss_pred cccCccchHHHHHHhhhcCCCCHHHHHHHHHhcCCcchhhhhhhhHHHHh
Q psy4041 68 EKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYRRYGEALFDIL 117 (162)
Q Consensus 68 ~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aGSkLDYrRYge~LFdIL 117 (162)
...||..+.++|.+.|+......+...+.--....+.++.+-++.+-+|.
T Consensus 376 ~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~iY 425 (437)
T d2bisa1 376 KAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAY 425 (437)
T ss_dssp CTTCHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56789999999999997655566665554433334567777777777763
No 4
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=31.41 E-value=3.2 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=17.1
Q ss_pred EEEEeeccccCCcccccceeec
Q psy4041 41 VSYCMNQKTEKPVLSGQRIKTR 62 (162)
Q Consensus 41 vs~~Msqk~eKP~L~G~RIKTR 62 (162)
|+|.||....+|.|+|+.++..
T Consensus 20 t~~A~s~de~r~~L~Gv~~~~~ 41 (122)
T d1ok7a2 20 TQFSMAHQDVRYYLNGMLFETE 41 (122)
T ss_dssp HGGGSCSSCSSGGGSEEEEEEE
T ss_pred EeEEEecCCCcceeEeEEEEEe
Confidence 4566777777999999988763
No 5
>d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=30.85 E-value=23 Score=22.41 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=32.2
Q ss_pred cccCccchHHHHHHhhhcCCCCHHHHHHHHHhcC-Cc-chhhhhhh
Q psy4041 68 EKYDPAGFRDYILSGLNAAGTDLEAVSKFLDIAG-SK-VDYRRYGE 111 (162)
Q Consensus 68 ~K~DP~~FRDaIv~gLn~~~gDLEavaK~LD~aG-Sk-LDYrRYge 111 (162)
.++-|-.||-...+.|-+.|-+++.|++.| | ++ ---.||..
T Consensus 155 ~~~t~HslRht~at~l~~~G~~~~~i~~~~---GH~s~~~~~~Y~~ 197 (214)
T d1f44a2 155 LAWSGHSARVGAARDMARAGVSIPEIMQAG---GWTNVNIVMNFIR 197 (214)
T ss_dssp SSCCTTHHHHHHHHHHHHTTCCHHHHHHHH---TCCCHHHHHHHTT
T ss_pred cCCchhhhhcccchHHHHCCCCHHHHHHHh---CCCCHHHHHHHhh
Confidence 456788999999999998999999999999 5 33 23456654
No 6
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=28.72 E-value=3.9 Score=27.59 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.5
Q ss_pred EEEEeeccccCCcccccceeecc
Q psy4041 41 VSYCMNQKTEKPVLSGQRIKTRK 63 (162)
Q Consensus 41 vs~~Msqk~eKP~L~G~RIKTRK 63 (162)
|+|.+|....+|.|+|+.++-..
T Consensus 21 v~fA~s~d~~r~~L~Gv~~~~~~ 43 (123)
T d1vpka2 21 VIFAAAKDEFMRNLNGVFWELHK 43 (123)
T ss_dssp HGGGSCCCTTCTTTSEEEEEEET
T ss_pred eeEEeccCCccceEEeEEEEEec
Confidence 45667777779999999887643
No 7
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=28.28 E-value=6.2 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHhhhcCC-CCHHHHHHHHHhcCCcchhhhhhhhHHH
Q psy4041 78 YILSGLNAAG-TDLEAVSKFLDIAGSKVDYRRYGEALFD 115 (162)
Q Consensus 78 aIv~gLn~~~-gDLEavaK~LD~aGSkLDYrRYge~LFd 115 (162)
+.++++..-| .|+|.+++.++. -+.-+-+||+.+|++
T Consensus 9 ~Fi~a~ekyGR~d~~~Ia~e~~~-Kt~eEV~~Y~~vFw~ 46 (52)
T d1ofcx1 9 QFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWE 46 (52)
T ss_dssp HHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 5677777755 799999999942 244788999999886
No 8
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.23 E-value=8.6 Score=22.02 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=7.9
Q ss_pred eeccccCce
Q psy4041 137 VCRICKTTA 145 (162)
Q Consensus 137 ~~~~~~t~~ 145 (162)
||+.|+.||
T Consensus 1 VC~~C~~PF 9 (32)
T d1x3ha2 1 VCGDCFTSF 9 (32)
T ss_dssp BCSSSCCBS
T ss_pred CcCccCCcC
Confidence 799999876
No 9
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.21 E-value=25 Score=22.23 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=24.4
Q ss_pred cccccCccch--HHHHHHhhhcCCCCHHHHHHHH
Q psy4041 66 EKEKYDPAGF--RDYILSGLNAAGTDLEAVSKFL 97 (162)
Q Consensus 66 ek~K~DP~~F--RDaIv~gLn~~~gDLEavaK~L 97 (162)
.-+..---+| ++..++.|..++||+++..++|
T Consensus 25 QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~L 58 (61)
T d1veja1 25 ELEELKALGFANRDANLQALVATDGDIHAAIEML 58 (61)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3344444567 6777899999999999988888
No 10
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.06 E-value=15 Score=23.41 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=30.8
Q ss_pred cchHHHHHHhhhc-CCCCHHHHHHHHHhcCCcchhhhhhhhHHHHhh
Q psy4041 73 AGFRDYILSGLNA-AGTDLEAVSKFLDIAGSKVDYRRYGEALFDILI 118 (162)
Q Consensus 73 ~~FRDaIv~gLn~-~~gDLEavaK~LD~aGSkLDYrRYge~LFdILi 118 (162)
-+|.|..+..|.. .+.+.+++.+.. .-+.--.++||+.|.+++=
T Consensus 42 ~Vl~d~~L~~iA~~~P~~~~eL~~i~--g~~~~~~~~~g~eil~~I~ 86 (96)
T d2hbka1 42 FVMPNQLLAALVAYTPTDVIGVVSLT--NGVTEHVRQNAKLLANLIR 86 (96)
T ss_dssp HHCCHHHHHHHHHHCCCSHHHHHTCT--TCCCHHHHHTHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHCCCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 4567777776666 567888876554 2234567899999999863
No 11
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.00 E-value=14 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=15.9
Q ss_pred ccccCCCCcccceeeccccCce
Q psy4041 124 GKTLDPTTRAGVMVCRICKTTA 145 (162)
Q Consensus 124 Gs~~ddg~~~~~~~~~~~~t~~ 145 (162)
|+-+...+.++-.+|.||+.+|
T Consensus 34 ~SQlk~n~~A~~i~C~vCrqtF 55 (86)
T d1wvka_ 34 GSQLEANKKAMSIQCKVCMQTF 55 (86)
T ss_dssp SCSSCCCCTTCCEEETTTTEEE
T ss_pred hhHHHHHHHhhccCcHHHHhHH
Confidence 3455555666678999999886
No 12
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.40 E-value=29 Score=21.21 Aligned_cols=24 Identities=25% Similarity=0.080 Sum_probs=19.9
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHh
Q psy4041 76 RDYILSGLNAAGTDLEAVSKFLDI 99 (162)
Q Consensus 76 RDaIv~gLn~~~gDLEavaK~LD~ 99 (162)
++..++.|..++||.++..+.|-+
T Consensus 23 ~~~Ni~AL~~t~GdV~~Aie~Ll~ 46 (50)
T d2dnaa1 23 YNANLQALIATDGDTNAAIYKLKS 46 (50)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 567889999999999998888743
No 13
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=23.73 E-value=2.3 Score=30.30 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=14.2
Q ss_pred hhhhhHHHHhhhcccc
Q psy4041 108 RYGEALFDILIAGGLL 123 (162)
Q Consensus 108 RYge~LFdILiaGGlL 123 (162)
+|.|..+||+|+||=+
T Consensus 2 ~~~~~~yDV~IvGaG~ 17 (360)
T d1pn0a1 2 KYSESYCDVLIVGAGP 17 (360)
T ss_dssp CEEEEEEEEEEECCSH
T ss_pred CCCCCCCCEEEECcCH
Confidence 6889999999999876
No 14
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=22.81 E-value=17 Score=21.94 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=23.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHhcCCcc
Q psy4041 76 RDYILSGLNAAGTDLEAVSKFLDIAGSKV 104 (162)
Q Consensus 76 RDaIv~gLn~~~gDLEavaK~LD~aGSkL 104 (162)
|+.|.+.|..++|+.-..|+.|...=++|
T Consensus 22 r~~I~~aL~~~~gn~~~aA~~LGIsR~TL 50 (60)
T d1umqa_ 22 WEHIQRIYEMCDRNVSETARRLNMHRRTL 50 (60)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHCCCHHHH
Confidence 67899999999999999999995433333
No 15
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=14 Score=26.26 Aligned_cols=12 Identities=42% Similarity=0.946 Sum_probs=8.9
Q ss_pred chhhhhhhhHHH
Q psy4041 104 VDYRRYGEALFD 115 (162)
Q Consensus 104 LDYrRYge~LFd 115 (162)
|||.+|++.|=.
T Consensus 1 LD~~~Ya~~L~~ 12 (148)
T d1de4c1 1 LDYERYNSQLLS 12 (148)
T ss_dssp CCGGGHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888887743
No 16
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.23 E-value=31 Score=20.12 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=18.7
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHH
Q psy4041 76 RDYILSGLNAAGTDLEAVSKFLD 98 (162)
Q Consensus 76 RDaIv~gLn~~~gDLEavaK~LD 98 (162)
++..++.|..++||+++..+.|-
T Consensus 17 ~~~Ni~AL~~t~Gdv~~Aie~Ll 39 (41)
T d2daha1 17 REANLQALIATGGDVDAAVEKLR 39 (41)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45678889999999999888774
Done!