RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4041
         (162 letters)



>d2gica1 a.260.1.1 (A:2-422) Nucleoprotein {Vesicular stomatitis
           indiana virus [TaxId: 11277]}
          Length = 421

 Score = 27.9 bits (62), Expect = 0.56
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 70  YDPAGFRDYILSGLNAAGTDLEAVSKFLDIAGSKVDYR 107
              +  R Y+  GL +    +  V+ +L  A   +  +
Sbjct: 45  KSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGK 82


>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
           {Janthinobacterium sp. J3 [TaxId: 213804]}
          Length = 268

 Score = 26.7 bits (57), Expect = 1.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 93  VSKFLDIAGSKVDYRRYGEALFDILIAGG 121
           V +F++  G +  Y   G+    ILI GG
Sbjct: 3   VERFVNAGGVETRYLEAGKGQPVILIHGG 31


>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas
           paucimobilis, UT26, LinB [TaxId: 13689]}
          Length = 298

 Score = 26.4 bits (56), Expect = 1.8
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 87  GTDLEAVSKFLDIAGSKVDYRRYGEALFDILIAGG 121
           G       KF++I G ++ Y   G     +   G 
Sbjct: 3   GAKPFGEKKFIEIKGRRMAYIDEGTGDPILFQHGN 37


>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 355

 Score = 26.4 bits (56), Expect = 2.1
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 3   AFSGDYLCASISCATTVLMWMCD 25
            F G  L A++       + + D
Sbjct: 331 NFKGKTLVAAVEKDGQSFLEILD 353


>d1dysa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola
           insolens, Cel6b [TaxId: 34413]}
          Length = 345

 Score = 25.7 bits (56), Expect = 3.0
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 104 VDYRRYGEALFDILIAGGLLGKTLDPTTRAGVMVCRICKTTAC 146
            D  RY   + + +   GL  + +   +R  +   R      C
Sbjct: 239 PDESRYATNIANAMRQRGLPTQFIIDQSRVALSGARSEWGQWC 281


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 597,034
Number of extensions: 26537
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 6
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)