BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4044
(460 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357630297|gb|EHJ78517.1| putative transposon Ty3-I Gag-Pol polyprotein [Danaus plexippus]
Length = 500
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 180/345 (52%), Gaps = 77/345 (22%)
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT 203
+TCLPFGL P+ FA +TNWIA LRN G+R +VYLDD L NQ L++ A+
Sbjct: 61 ITCLPFGLIPVPRTFASVTNWIAELLRNHGIRCVVYLDDFLRANQSKSALQNDIAGALKM 120
Query: 204 LQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLP------------LEKQS----- 246
+++L W +N ++SVL P Q ++LGI W+ ++KSL L KQS
Sbjct: 121 MRTLGWMINFQKSVLAPTQCLEFLGITWDTKRNTKSLSGQKCLTLRKALYLLKQSKWSLR 180
Query: 247 ------------------------TIQRYLLTLT----------------QIQWWSVALH 266
T+Q Y L +++WW +
Sbjct: 181 QYQSIMGRLKFASFVTRRGRLHCRTLQYYSRQLPKTHPHRRVSIPQPVQPELEWWLEEIG 240
Query: 267 RSSPIFPQAPQV--FVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALE 324
S PI Q PQ+ ++T+ASN+GWGA ++ S+ W+ + A++
Sbjct: 241 GSMPI--QIPQLTNLLTTNASNTGWGAQLNEISISRTWT----------------KPAIQ 282
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPG 384
LQ+ +L+Q+DN+TVVSYI+KEGGT+S KLL + L + + N+ L+A+YIPG
Sbjct: 283 LDQDGLQNSQILLQTDNRTVVSYINKEGGTQSLKLLEQTRRLLSVLDKVNMHLIAQYIPG 342
Query: 385 KFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFATANS 429
++N D+LSRQK P+WHL+ E T IF WG PEID FA+ +
Sbjct: 343 RYNVEVDALSRQKACPEWHLITEATTKIFQMWGCPEIDFFASKTA 387
>gi|326678616|ref|XP_689703.4| PREDICTED: enzymatic polyprotein-like [Danio rerio]
Length = 585
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 32/366 (8%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
F ++ R+ ++ D+ IDL AYFHV I P H++FL + + LPFGL+
Sbjct: 99 FRMLTQRRILQCVRPRDWFAAIDLKDAYFHVSILPRHRQFLRFAFEGRAWQYKVLPFGLS 158
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVN 212
+P+VF KL LR G+R++ YLDD L+ L + L+ L VN
Sbjct: 159 LSPRVFTKLAEGALAPLRLAGIRILSYLDDWLILAHSREQLIMHRDEVLRHLRLLGLQVN 218
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPL-----EKQSTIQRYLLTLTQIQWWSVALHR 267
E+S L PVQ +LG+ LDS ++ L + LL + +Q W HR
Sbjct: 219 REKSKLAPVQRISFLGM----ELDSITMRLLGHMASAAAVTPLGLLHMRPLQHWLHDRHR 274
Query: 268 SS--------------PIFPQA--------PQVFVSTDASNSGWGAIVDNHSLGGVWSDH 305
S P F QA V VSTDASN+GWGA+ H+ G+W
Sbjct: 275 VSVTALCRRALSPWNDPSFLQAGVPLGQASSHVVVSTDASNTGWGAVCRGHAAAGLWKGA 334
Query: 306 QEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
Q WHIN E+ AV AL R LPVL+ + VL+++D+ +YI++ GG +S ++ +
Sbjct: 335 QLHWHINRLELLAVFLALHRFLPVLERQHVLVRTDSTAAAAYINRMGGMRSRRMSQLARR 394
Query: 366 LFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLF 424
L + +L A ++PG N AD+LSRQ P +W L PE Q I+A++G +IDLF
Sbjct: 395 LLLWSHPRLKSLRAIHVPGTLNRAADALSRQLLRPGEWRLHPESVQLIWARFGEAQIDLF 454
Query: 425 ATANSA 430
A+ +A
Sbjct: 455 ASPENA 460
>gi|301618694|ref|XP_002938748.1| PREDICTED: hypothetical protein LOC100127807 [Xenopus (Silurana)
tropicalis]
Length = 4048
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 175/337 (51%), Gaps = 1/337 (0%)
Query: 91 KKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFG 150
++F + + V ++ G+FL +D+ AY HVPI P HQ +L ++ T LPFG
Sbjct: 764 RRFKMESVRSVIRAMEPGEFLTSLDMKDAYLHVPIFPPHQAYLRFAFQGQHLQFTALPFG 823
Query: 151 LASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWS 210
L+SAP++F K+ + +A +LR G+ + YLDDLL+ + S + TLQ W+
Sbjct: 824 LSSAPRIFTKIMSTMAAHLRVQGVCITPYLDDLLIKARSSHQAERDLTQTMQTLQEFGWT 883
Query: 211 VNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSP 270
+N ++S L P Q +LG +++ LP EK + + L Q S+
Sbjct: 884 INRQKSFLIPSQRMPFLGFIFDTHQGRVLLPEEKVQKLISLVQELKTTQRPSIRHCMKGR 943
Query: 271 IFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVL 330
+ ++TDAS SGWGA G+WS+ + IN+ E+ A+ A+ L
Sbjct: 944 SLEEPRWQVITTDASLSGWGATFKTQIAQGLWSESEGTLPINILEIRAIFRAVVHWEEQL 1003
Query: 331 QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWA 390
D+ V IQSDN T V+Y++++GGTKS E+ +F A + A +IPG N A
Sbjct: 1004 VDQDVRIQSDNATAVAYLNRQGGTKSVAAASEISKIFRWAETRVTQISAVHIPGVVNWEA 1063
Query: 391 DSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLFAT 426
D LSR P +W L EV +I +WG P++DL A+
Sbjct: 1064 DFLSRHYVDPTEWELNTEVFDYITTKWGQPDLDLMAS 1100
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/467 (29%), Positives = 221/467 (47%), Gaps = 74/467 (15%)
Query: 33 LISWISDHPPNQDSFF---EVARHTAILLLLCSGRRVHDL---TLLLSSRDG-FQDLGDR 85
+S + P Q +F E R T +++ + +R ++ +DG F+ + D
Sbjct: 1773 FMSRVPHQAPKQQAFLSIIEKLRKTGVIVPVPQNQRFRGFYSNLFIVPKKDGSFRPILDL 1832
Query: 86 AFLS----LKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
L+ KF + + + L+ GDFL +D+ AY HVPI HQ++L +R+
Sbjct: 1833 KLLNRWIVYHKFKMESVRTIIRALEPGDFLASLDIRDAYLHVPIFQPHQQYLRFAFRNQH 1892
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
+ LPFGL+SAP++F K+ +A +LR G+ ++ YLDDLL+ + L + +
Sbjct: 1893 FQFIALPFGLSSAPRIFTKIMASMAAFLRVRGVFIMPYLDDLLIKARSKTLAEHNVQLTI 1952
Query: 202 ATLQSLRWSVNLERSVLWP----------------------------------------- 220
+L+ WS+NL++S L P
Sbjct: 1953 QSLRMFGWSINLDKSSLSPSQNMIFLGLQFQTDIQKVFLPRDKQLKIQRSTRILRATARP 2012
Query: 221 -VQTC-QYLGIMWNPTLDSKSL------PLE--------KQSTIQRYLL---TLTQIQWW 261
+Q C + LG+M + T+++ S PL+ + S QR L TL + WW
Sbjct: 2013 TIQMCMRVLGLMVS-TMEAVSFAQFHLRPLQTAVLKLWNRTSLHQRITLPEDTLRSLSWW 2071
Query: 262 SVALH-RSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVR 320
F + + V+TDAS +GWGA + G+W+ + + IN+ E+ A+
Sbjct: 2072 LTPERLTQGKTFLEPVWLIVTTDASLTGWGATFQGKAAQGLWTQEEALLPINILELRAIL 2131
Query: 321 SALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMAR 380
AL+ L+++ V IQSDN T V+YI+++GGT+S + +EV + + A R L A
Sbjct: 2132 LALQSWERFLRNQAVRIQSDNATAVAYINRQGGTRSNRANQEVSFILEWAERTATLLSAI 2191
Query: 381 YIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLFAT 426
+IPG N AD LSR P +W L + + +WG+PEIDL A+
Sbjct: 2192 HIPGVSNVEADFLSRHHLDPGEWQLHQDAFLCLTRRWGMPEIDLMAS 2238
>gi|326671087|ref|XP_002660956.2| PREDICTED: enzymatic polyprotein-like [Danio rerio]
Length = 714
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 184/366 (50%), Gaps = 32/366 (8%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
F ++ R+ ++ D+ IDL AYFHV I P H++FL + + LPFGL+
Sbjct: 107 FRMLTQRRILQCVRPRDWFAAIDLKDAYFHVSILPRHRQFLRFAFEGRAWQYKVLPFGLS 166
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVN 212
+P VF KL LR G+R++ YLDD L+ L + L+ L VN
Sbjct: 167 LSPWVFTKLAEGALAPLRLAGIRILNYLDDWLILAHSREQLIMHRDKVLRHLRLLGLQVN 226
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPL-----EKQSTIQRYLLTLTQIQWWSVALHR 267
E+S L PVQ +LG+ LDS ++ L + LL + +Q W HR
Sbjct: 227 REKSKLAPVQRISFLGM----ELDSITMRLLGHMASAAAVTPLGLLHMRPLQHWLHDRHR 282
Query: 268 --------------SSPIFPQA--------PQVFVSTDASNSGWGAIVDNHSLGGVWSDH 305
+ P F QA V VSTDASN+GWGA+ H+ G+W
Sbjct: 283 VLVTALCRRALSPWNDPSFLQAGVPLGQASSHVVVSTDASNTGWGAVCRGHAAAGLWKGA 342
Query: 306 QEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
Q WHIN E+ AV AL R LPVL+ + VL+++D+ +YI++ GG +S ++ +
Sbjct: 343 QLHWHINRLELLAVFLALHRFLPVLERQHVLVRTDSMAAAAYINRMGGMRSRRMSQLARR 402
Query: 366 LFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLF 424
L + +L A ++PG N AD+LSRQ P +W L P+ Q I+A++G +IDLF
Sbjct: 403 LLLWSHPRLKSLRAIHVPGTINRAADALSRQLLRPGEWRLHPKSVQLIWARFGEAQIDLF 462
Query: 425 ATANSA 430
A+ +A
Sbjct: 463 ASPENA 468
>gi|17066696|gb|AAL35360.1|AF442732_3 reverse transcriptase/ribonuclease H/putative methyltransferase
[Tetraodon nigroviridis]
Length = 785
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 189/402 (47%), Gaps = 64/402 (15%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
F ++ + + ++ D+ V IDL+ AYFH+ I P+H++FL Y+ Y +PFGL+
Sbjct: 272 FRMLTYKVLCSSIRPNDWFVTIDLADAYFHIAIYPAHRKFLRFAYQGAAYEFQRIPFGLS 331
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVN 212
AP+VF+K LRN G+R+ Y+DD L+ + + + + + L++L ++VN
Sbjct: 332 LAPRVFSKCVEAALFPLRNSGIRIFSYIDDYLVCSHSREQVITDSVTVLRHLRNLGFTVN 391
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQST------------------------- 247
+S L P Q YLG+ N L E++ T
Sbjct: 392 ETKSRLEPSQYTDYLGLTLNSLSYRVRLSTEREQTFNHCLALFQLGKMVTFRLCLRLLGL 451
Query: 248 -------IQRYLLTLTQIQWWSVALHRSS------------------------------- 269
++ LL + +Q W +L S
Sbjct: 452 MASVISVVRLGLLMMRDVQRWVASLRLCSRKHLSRRVRVTARCMAALRPWRDPAALTAGV 511
Query: 270 PIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPV 329
P+ + +V ++TDAS GWGA + + GVWS +HIN+ EM AV AL LP
Sbjct: 512 PLGAVSSRVTLTTDASLWGWGATLSGRTANGVWSQQMAQFHINVLEMQAVFLALRHFLPY 571
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L + VL+++DN +VV+YI+++GGT+S +L L + ++L A ++ G N
Sbjct: 572 LYGRHVLVKTDNSSVVAYINRQGGTRSQQLHELARRLVLWSSSRLLSLRATHVAGVLNRG 631
Query: 390 ADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
AD LSR L +W L P+V I+ ++G +DLFA+ +A
Sbjct: 632 ADLLSRGNPLYGEWRLHPQVVAQIWQRYGKAAVDLFASQENA 673
>gi|170819710|gb|ACB38665.1| reverse transcriptase [Daphnia pulex]
Length = 1291
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 189/408 (46%), Gaps = 73/408 (17%)
Query: 90 LKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L KF HF++ + +++GD+L K+DL AYF V ++ H+++L + ++
Sbjct: 723 LNKFIRYQHFKMENLESVRFLVRKGDWLAKVDLKDAYFTVAVKKEHRKYLRFRWGKRVFE 782
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT 203
C+ FGLA P+VF K+ + +LR G+R+++YLDD+L+ N+ L + +
Sbjct: 783 FNCMAFGLA--PRVFTKILKTVMAFLRRKGIRLVIYLDDILVLNESKEGLVADVNTVLEL 840
Query: 204 LQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTI--------------- 248
LQSL + +N E+S++ P Q +YLG++ + S SLP K + +
Sbjct: 841 LQSLGFLINWEKSIIAPTQVIEYLGLIVDSNDPSFSLPCAKAAAVRKMCETALSEGKVSL 900
Query: 249 ---------------------------QRYLLTLTQ-------------------IQWWS 262
QR+ ++ Q + WW
Sbjct: 901 RTIASIQGNFAWAIPAIPFAQSHYRSLQRFYISNAQRVDFNLEAKVRLSPSAALDLGWWV 960
Query: 263 VALHRSSP--IFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVR 320
+ +++ FP+ P + + +DAS +GWGA+ + + G W+ HIN E+
Sbjct: 961 ANIEKANGKMFFPREPDLEIFSDASLTGWGAVCNGVTTRGPWTVQDMNKHINELELLGAF 1020
Query: 321 SALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMAR 380
A++ + + I DN T VSY++K GGTKS L +A+ +I++ A
Sbjct: 1021 FAIQTFSAQTSNIAIRIFLDNSTAVSYVNKCGGTKSAALTNTAKAISAWCEEKSISVEAV 1080
Query: 381 YIPGKFNTWADSLSR-QKELPDWHLLPEVTQHIFAQWGVPEIDLFATA 427
++ G+ N AD SR + + DW L + I W + ++DLFA++
Sbjct: 1081 HLAGELNVIADRESRAEADTSDWRLDATIFSRISEIWEM-DVDLFASS 1127
>gi|384498610|gb|EIE89101.1| hypothetical protein RO3G_13812 [Rhizopus delemar RA 99-880]
Length = 370
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 178/368 (48%), Gaps = 20/368 (5%)
Query: 83 GDRAFLSLKKFHLINHFRVPDF-----------LQRGDFLVKIDLSQAYFHVPIRPSHQR 131
G R +LKK + + +VP F ++ +LV IDLS A+ H+ + +
Sbjct: 10 GIRPVFNLKKLN--EYLKVPHFKMETIREGSQMIRPNAYLVSIDLSDAFLHIALHSDSRW 67
Query: 132 FLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSV 191
FL + +++ +Y PF L S+ VF K+ I + + G R+ YLDD +L
Sbjct: 68 FLRLKWKNQVYQYCTTPFDLVSSLFVFTKVCRPILEHFCSQGFRISAYLDDWILAASTKQ 127
Query: 192 LLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRY 251
L + +A VA LQ L W VN ++SVL P Q + LG + +SLP++K I+R
Sbjct: 128 LAIQRVQAVVALLQQLGWMVNFKKSVLTPTQQLERLGFVLITHTMMESLPMKKLRDIRRS 187
Query: 252 LLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHI 311
+ L+ ++ + T S++GW NH G W+ + I
Sbjct: 188 SKQVGSFAISPARLYTRYLLYYKH-----QTVKSDTGWRCSWQNHRAHGYWNPIEAAQSI 242
Query: 312 NLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV 371
N +E+ A AL + V + +LI++ N T +SYI+K+GGT+S LL +++ +
Sbjct: 243 NWRELKAAHLAL-KTFRVPKISTILIRTVNATSLSYINKQGGTRSPPLLELATEVWNWCL 301
Query: 372 RHNITLMARYIPGKFNTWADSLSRQKELPD-WHLLPEVTQHIFAQWGVPEIDLFATANSA 430
RHNI + A++I G +NT AD SRQ + W + P V + + WG IDLFA +
Sbjct: 302 RHNIMIQAQHIYGIYNTIADIESRQTFFKNQWQIKPSVFEELNKIWGPFTIDLFADRTTK 361
Query: 431 AFLVQGGP 438
G P
Sbjct: 362 LLPSSGVP 369
>gi|170819724|gb|ACB38666.1| reverse transcriptase [Daphnia pulex]
Length = 757
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/407 (27%), Positives = 181/407 (44%), Gaps = 71/407 (17%)
Query: 90 LKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L +F HF++ + L++GD++VK+DL AY +P+ PSHQ+FL ++ ++
Sbjct: 187 LNQFIQYEHFKMENLDSARFLLRKGDWMVKLDLKDAYLTIPVHPSHQKFLRFKWKGRIFQ 246
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT 203
CL FGLA AP++F K+ + +LR GMR+I+YLDD+L+ N+ + V
Sbjct: 247 FKCLAFGLAPAPRIFTKILKAVMGFLRKQGMRLIIYLDDILILNRSREGAAKDFKQVVDL 306
Query: 204 LQSLRWSVNLERSVLWPVQTCQYLG----------------------------------- 228
L L + +N E++V P Q +YLG
Sbjct: 307 LLQLGFLINWEKTVADPAQKLEYLGLMLDSCRLSFALPSAKALAVKSMCESALAVDSISL 366
Query: 229 -----IMWNPTLDSKSLPLEKQ--STIQRYLLTLTQ-------------------IQWW- 261
IM N T ++P + ++Q Y ++ + +QWW
Sbjct: 367 REIASIMGNFTWAIPAIPFAQAHFRSMQSYYISRARRAGYDLKTKCVLSAAARLDLQWWI 426
Query: 262 -SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVR 320
S+ + R FP + + TDAS SGWGA + G W+ HIN E+
Sbjct: 427 SSLKVDRDKLFFPDVTDLEIYTDASLSGWGACCNGVRTRGSWTAADTKKHINELELVGAL 486
Query: 321 SALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMAR 380
A++ + I DN T V+Y++ GGT+S +L L +I++ A
Sbjct: 487 FAVQAFAAKSSSISIRIYLDNVTAVAYVNHCGGTRSKELTLVSAELTSWCEARDISIEAV 546
Query: 381 YIPGKFNTWADSLSRQK-ELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
++ G+ N AD SR + DW L P V + I W ++D+FA+
Sbjct: 547 HVAGRLNVIADEESRAGPDSGDWKLDPMVFERIQQLWP-SDVDVFAS 592
>gi|345495977|ref|XP_001604972.2| PREDICTED: hypothetical protein LOC100121360 [Nasonia vitripennis]
Length = 1198
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 177/353 (50%), Gaps = 30/353 (8%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ L +GDF+ ++DL +AYF +PI +++FL +++ LY LPFGL+SAP VF K+
Sbjct: 450 NLLNKGDFMCRLDLKEAYFLIPIHDEYKKFLRFKHKNQLYQFNVLPFGLSSAPFVFTKIG 509
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ-------SLRWSVN--- 212
I N+LR G+RV++YLDD L+ + +A TL+ +R ++
Sbjct: 510 KPIVNWLRKNGVRVVIYLDDFLILGRSEEECSFNINSADMTLELPQEKRVKIREMIDILL 569
Query: 213 -LERSVLWPVQTCQYLGIMWNPT-----LDSKSLPLEKQSTIQRYL------LTLT---- 256
+ER + + C + + P L K L L K++ ++ +TL+
Sbjct: 570 KMERVKVKVIAKCIGVLVAACPAVAYGWLYYKHLELIKRNALRSNFKRMDKWITLSLEAK 629
Query: 257 -QIQWW-SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLK 314
+++WW S L + I + + +DAS +GWGAI N G W+ + HIN
Sbjct: 630 EELKWWQSQILIAKNKIRSSNFDLEIFSDASTTGWGAICGNKKANGFWNREEREMHINFL 689
Query: 315 EMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHN 374
E+ A AL+ +K +L++ DN T ++YI+K GG K +L + +++ +
Sbjct: 690 EIKAAFLALKCFAAHSLNKQILLRIDNITALAYINKMGGIKHKELHALTKVIWEWCIERE 749
Query: 375 ITLMARYIPGKFNTWADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFAT 426
I + A YI K N AD SR + +W L Q I ++G P IDLFA+
Sbjct: 750 IWIFAEYIASKENI-ADEGSRITNVDTEWELANFAFQKIVKEFGYPSIDLFAS 801
>gi|327286446|ref|XP_003227941.1| PREDICTED: hypothetical protein LOC100566709 [Anolis carolinensis]
Length = 1049
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 191/412 (46%), Gaps = 88/412 (21%)
Query: 91 KKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFG 150
++F ++ + FL++G + +DL AYFH+ +R SH+RFLS + D +Y LPFG
Sbjct: 121 RRFRMVTLATILPFLRKGAWFATVDLRDAYFHISVRRSHRRFLSFLIGDVIYSFNVLPFG 180
Query: 151 LASAPQV-------------------FAKLTNWIA----------------NYLRNLGM- 174
LA+AP+V F + +W+ ++L+ LG+
Sbjct: 181 LATAPRVFTKCMSVVAAALRQRGITIFPYIDDWLLVSDSRPQLEFDVSFTLSFLQGLGLI 240
Query: 175 -----------RVIVYLDDLLLGNQDSVLLRS-----QARAAVATLQSLRWS-------- 210
+ I ++ L+ DS+ R+ + R+ A++ LR S
Sbjct: 241 INEEKSHLHPSQTIQFIGALM----DSIAERAYLPEERFRSIRASISQLRMSGQASAWHV 296
Query: 211 -------------VNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQ 257
V+L R + P+Q + ++NP DS+ L +++ L
Sbjct: 297 QSILGHMASTTSLVDLARLRMRPLQF--WFLKVFNPLFDSQRTLLRPPASV------LES 348
Query: 258 IQWW--SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKE 315
++WW L + P P P + ++TDAS GWGA ++ ++ G WS HINL E
Sbjct: 349 LEWWLKRHNLLKGLPFHPPTPSLELTTDASQDGWGAHLNGMTINGRWSAQHRTLHINLLE 408
Query: 316 MFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNI 375
+ AV AL +L+ V + +DN TV Y++K+GGT S LL+ ++D V I
Sbjct: 409 LLAVERALHAFDRLLRGNTVRLVTDNTTVKFYLNKQGGTHSRLLLQTSMRIWDWCVDRRI 468
Query: 376 TLMARYIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLFAT 426
L A ++PGK N AD+LSR +W L + + + +WG P IDLFA+
Sbjct: 469 NLQAVHLPGKDNALADALSRTTTSNHEWQLNNKEFRLLARRWGWPAIDLFAS 520
>gi|326676637|ref|XP_003200633.1| PREDICTED: hypothetical protein LOC100537191, partial [Danio rerio]
Length = 417
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 46/340 (13%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
F ++ R+ ++ D+ IDL AYFHV I P H++FL + + LPFGL+
Sbjct: 15 FRMLTQRRILQCVRPRDWFAAIDLKYAYFHVSILPRHRQFLRFAFEGRAWQYKVLPFGLS 74
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDD-LLLGNQDSVLLRSQARAAVATLQSLRWSV 211
+P+VF KL LR G+R++ YLDD L+L + L+ + R + L+ L V
Sbjct: 75 LSPRVFTKLAEGALAPLRLTGIRILNYLDDWLILAHLREQLIVHRDR-VLRHLRLLGLQV 133
Query: 212 NLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPI 271
N E+S L PVQ +LG ++ S+ + S +Q P+
Sbjct: 134 NREKSKLAPVQRISFLG------MELDSITMNDPSFLQ-----------------AGVPL 170
Query: 272 FPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
+ V STDASN+GWG IN E+ AV AL+R LPVL+
Sbjct: 171 GQASSHVVDSTDASNTGWG--------------------INRLELLAVFLALQRFLPVLE 210
Query: 332 DKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWAD 391
+ +L+++D+ +YI++ GG S ++ + L + +L A ++PG N AD
Sbjct: 211 QQHMLVRTDSTAAAAYINRMGGMSSRRMSQLARRLLLWSHPRLKSLCAIHVPGTLNRAAD 270
Query: 392 SLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
+LSRQ P +W L PE Q I+A++G +IDLFA+ +A
Sbjct: 271 ALSRQLLRPGEWRLHPESVQLIWARFGEAQIDLFASPENA 310
>gi|292630533|ref|XP_002667924.1| PREDICTED: hypothetical protein LOC100333442 [Danio rerio]
Length = 762
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 173/365 (47%), Gaps = 39/365 (10%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGL 151
KF ++ + LQ D+ V IDL AYFH+ I PSH+RFL + Y LPFGL
Sbjct: 297 KFKMLTISTIMSQLQSEDWFVTIDLKDAYFHISIHPSHRRFLRFAFGGKAYQYRVLPFGL 356
Query: 152 ASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSV 211
A +P+ FAK+ + LR G+R++ YLDD L+ + +LL + ++ L +
Sbjct: 357 ALSPRTFAKVVDAALAPLRLQGIRILNYLDDWLILARSRLLLVQHRGVVLTHIEKLVLQL 416
Query: 212 NLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRY-----------------LLT 254
N ++SVL P QT +L I +K + L + T++++ LL
Sbjct: 417 NQKKSVLVPAQTTTFLSI----RAAAKRIKLGQAITVKQFQKLLGLLAAASNIIPLGLLH 472
Query: 255 LTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGA---------IVDNHSLGGVWSDH 305
+ +Q W + F +F + AS A + +LG +H
Sbjct: 473 MRPLQRWL-----KTRGFSLRGNLFRTIKASRCCLQALSIWKKLWFLSQGPTLG---REH 524
Query: 306 QEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
HIN EM AV AL P ++ VL+++D +VVSYI+ +GG S L R +
Sbjct: 525 HFHMHINCLEMLAVFQALRHFFPQVRGHHVLVKTDKTSVVSYINHQGGLNSRPLCRLAKR 584
Query: 366 LFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLF 424
+ A ++L A YIPG N AD LSRQ+ P W L P+V I+ ++ +I+LF
Sbjct: 585 ILLWAQGRLLSLKAAYIPGPMNVGADLLSRQRLEPGGWRLHPKVVAAIWQRFSKADINLF 644
Query: 425 ATANS 429
A +
Sbjct: 645 ACQKT 649
>gi|190702585|gb|ACE75468.1| reverse transcriptase and recombinase [Glyptapanteles indiensis]
Length = 1167
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 182/405 (44%), Gaps = 66/405 (16%)
Query: 83 GDRAFL----SLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRF 132
GD F+ L K+ L HF++ DF + +G F+ IDL AYF +PI ++++
Sbjct: 378 GDYRFVLNLKDLNKYILTFHFKMEDFRTAIKLMSKGCFMGTIDLKDAYFLIPIANKYRKY 437
Query: 133 LSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVL 192
L +++ L+ C+PFGL P +F K++ IAN+LR+LG +VYLD L +D
Sbjct: 438 LRFMWKQLLFEWACVPFGLNIGPWLFTKISKPIANFLRSLGFLSVVYLDYWLCFGRDIEE 497
Query: 193 LRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG-IMWNPTLDSKSLP---------- 241
+ L+S+ + VN ++S P CQ+LG +++ K+L
Sbjct: 498 CLNNLNQTKQCLESIGFVVNKDKSTPLPNMRCQFLGQLIYTLITKFKNLKTCSIREFAQF 557
Query: 242 ----------------LEKQSTIQRYLLTL-----------------TQIQWWSVA-LHR 267
K Q+YL L T + WW L
Sbjct: 558 VRNITAACPAVQYGWVYSKSLERQKYLALLKSSGNYDAKMKLSACLITDLNWWQKNILVT 617
Query: 268 SSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKL 327
++ I Q ++ +STDAS +GWGA ++ G W + + I E+ A L+
Sbjct: 618 ANQIRQQHYKLEISTDASLTGWGAACNHELYNGAWYGEELNYSIIHLELIAAYFGLQCFA 677
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
+D +L++ DN T +SYI++ GG + L ++ +HN+ + A YI K N
Sbjct: 678 EDKRDCEILLRIDNTTAISYINRMGGIQYPSLNAIAREIWQWCEQHNLWITASYIASKEN 737
Query: 388 TWADSLSR------QKELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
AD SR + EL DW Q I +G PEIDLFA+
Sbjct: 738 IKADYGSRIVNPDTEWELADWAF-----QRIVKNFGTPEIDLFAS 777
>gi|357609981|gb|EHJ66772.1| hypothetical protein KGM_00439 [Danaus plexippus]
Length = 264
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 110/193 (56%), Gaps = 1/193 (0%)
Query: 235 LDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQV-FVSTDASNSGWGAIV 293
L S L QS IQ T++ WW + S I P+ V TDAS+ WGA+V
Sbjct: 64 LHSNKLRKCPQSQIQFSEEVRTELIWWMENIDGESSIHPKRMSTNHVITDASDIQWGALV 123
Query: 294 DNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGG 353
+N + G W H WH NL++M AV +A+ K L++ V++ +DN+TVV+YI EGG
Sbjct: 124 NNELMKGAWEHHHTNWHCNLEDMSAVLTAISVKAMELRNSTVILHNDNKTVVTYIKNEGG 183
Query: 354 TKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIF 413
T+S +LL L +L NI L R++PG NT AD LSR + +WH+ + T +F
Sbjct: 184 TRSCQLLELTRQLLNLVDHFNIVLYPRHLPGLLNTEADHLSRNRVAVEWHIRDKETLRLF 243
Query: 414 AQWGVPEIDLFAT 426
+ WG P++DLFA+
Sbjct: 244 SLWGTPDLDLFAS 256
>gi|301620562|ref|XP_002939645.1| PREDICTED: e3 ubiquitin-protein ligase HUWE1-like [Xenopus (Silurana)
tropicalis]
Length = 5647
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 177/388 (45%), Gaps = 70/388 (18%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN- 163
L+ +FL +D+ AY HVPI P HQ+FL Y D Y LPFGL+SAP++F K+
Sbjct: 1149 LEPQEFLTSLDMKDAYLHVPIHPLHQKFLRFAYHDHHYQFVALPFGLSSAPRIFTKIMAT 1208
Query: 164 ----------WIANYLRNLGMR---VIVYLDDLLLGNQ------------DSVLLRSQA- 197
+I YL +L ++ + L+DL L Q S L+ SQ
Sbjct: 1209 MAALLRVRGVYITPYLDDLLIKAPSIHQALEDLNLSIQTLQNFGWTINRPKSCLVPSQRI 1268
Query: 198 ----------RAAV----ATLQSLRWSVNLERSVLWP-VQTC-QYLGIMWNPTLDSKSLP 241
R V + R V +S+ P ++ C + LG+M T +++P
Sbjct: 1269 QFLGLLLDTRRGKVLLPEEKIHKTRLLVRQLKSIPKPSLRFCMKVLGVMVAST---EAVP 1325
Query: 242 LEK-----------------QSTIQRYLL---TLTQIQWWSVALHRS-SPIFPQAPQVFV 280
+ S QR L TL + WW H + F +
Sbjct: 1326 FAQFHLRALQRNVISEWRRHHSLNQRISLSTQTLDSLNWWLTPPHLTQGKSFADPNWQII 1385
Query: 281 STDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSD 340
+TDAS SGWGA N S G+WS + IN+ E+ A+ AL L + IQSD
Sbjct: 1386 TTDASLSGWGATFQNLSAQGLWSAAESRLPINILEIRAIFRALTHWETRLTGLAIRIQSD 1445
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNI-TLMARYIPGKFNTWADSLSR-QKE 398
N T VSY++++GGT+S E+ + A HN+ + A +IPG N AD LSR Q +
Sbjct: 1446 NATAVSYLNRQGGTRSVAAAGEISKILRWA-EHNVPQISAVHIPGLLNWEADYLSRYQID 1504
Query: 399 LPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
+W L PEV I QWG P++DL A+
Sbjct: 1505 PTEWELHPEVFDLIVTQWGEPDLDLMAS 1532
>gi|357613897|gb|EHJ68774.1| putative reverse transcriptase/ribonuclease H/putative
methyltransferase-like protein [Danaus plexippus]
Length = 182
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 267 RSSPIFPQAPQV-FVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALER 325
R SPI P+ V TDAS+ WGA+V+N + W HQ WH N KEM AV +A+
Sbjct: 6 RQSPIHPKRMSTNHVITDASDIQWGALVNNEFIKDAWEHHQTNWHCNPKEMSAVLTAISV 65
Query: 326 KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGK 385
K L++ ++Q+DN+TVV++I EGGT+S +LL L +L NI L ++PG
Sbjct: 66 KAMELRNSTEILQNDNKTVVTFIKNEGGTRSRQLLELTRQLLNLVDHFNIVLSPHHLPGL 125
Query: 386 FNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFA 425
NT AD LSR + +WH+ + T +F WG P++DLFA
Sbjct: 126 LNTEADRLSRNRAAVEWHIRDKETLRLFNLWGTPDLDLFA 165
>gi|384497823|gb|EIE88314.1| hypothetical protein RO3G_13025 [Rhizopus delemar RA 99-880]
Length = 1062
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 190/421 (45%), Gaps = 78/421 (18%)
Query: 80 QDLGDRAFLSLKKFHLI---NHFR------VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R +LK+ + HF+ V + D+LV IDLS A+ H+ + P +
Sbjct: 371 KDGGIRPVFNLKRLNQYLDAPHFKMETIREVALMINPNDYLVSIDLSDAFLHIGLHPESR 430
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAP-------------------QVFAKLTNWI-ANYLR 170
RFL + ++D +Y FGL+++P ++ A L +WI A +
Sbjct: 431 RFLRLKWKDQVYQYCTTAFGLSTSPFVFSKVCRPILEHFRSQGYRISAYLDDWILAANTK 490
Query: 171 NLGMR----VIVYLDDL--LLGNQDSVLLRSQ---------------ARAAVATLQSLRW 209
L ++ V+ L L L+ + SVL +Q A + L+ LR
Sbjct: 491 QLAIQQAQTVVNLLQQLGWLINFKKSVLTPTQQLKHLGFVLNTKTMTASLPMKKLRDLRR 550
Query: 210 SVN------------LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR-----YL 252
S+ + SV +Q + ++ L ++ L K T+ +
Sbjct: 551 SIKQILDHPRRQTPRVIHSVTMRIQATTF--AIFPARLYTRRLLYHKNQTVHMDKDWDHP 608
Query: 253 LTLTQ-----IQWW--SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDH 305
++L Q +QWW ++ L P P V DASN+GWG NH G W+
Sbjct: 609 VSLDQESQQELQWWYNNLKLWNGRSFLPTTPSETVYVDASNTGWGCSWRNHRTHGYWTPE 668
Query: 306 QEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
+ IN +E+ A AL+ P L++ VLI++DN T ++YI+K+GGT+S L+
Sbjct: 669 EAQQSINWRELKAAYLALQ-TFPTLRNTTVLIRTDNTTSMTYINKQGGTRSLPLMTLATQ 727
Query: 366 LFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPD-WHLLPEVTQHIFAQWGVPEIDLF 424
++ +++NI L A+YI G N AD SR++ + W + P + Q I WG +DLF
Sbjct: 728 VWTWCLKNNIMLQAQYIQGIHNKVADFESRRQYFKNLWMIKPAIFQQINRMWGPYSVDLF 787
Query: 425 A 425
A
Sbjct: 788 A 788
>gi|348525970|ref|XP_003450494.1| PREDICTED: hypothetical protein LOC100698500 [Oreochromis
niloticus]
Length = 1418
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 179/406 (44%), Gaps = 71/406 (17%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
+L +F ++ ++ + + GD+ IDL+ AYFHV I P H++FL + Y
Sbjct: 268 YLRTYRFKMLTLRQLLNAVGPGDWFATIDLTDAYFHVAIHPKHRQFLRFAFEGVAYEYLV 327
Query: 147 LPFGLASAPQVFAK-------------------LTNW----------------IANYLRN 171
LPFGL+ AP+ F K L +W + ++++
Sbjct: 328 LPFGLSLAPRTFTKCAEAALAPLRERGIRILAYLDDWALVACSREQAETQLSLVLSHIQT 387
Query: 172 LGMRVIVYLDDLLLGNQDSVL------LRSQARAA---VATLQSLRWSVNLERSVLWPVQ 222
LG V L+ Q S L L S+AR + VA L R + + Q
Sbjct: 388 LGFSVNFQKSSLIPSQQISFLGLEICSLSSRARLSEHRVAAFHRCLAQFQLGRRLRF--Q 445
Query: 223 TCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLT-------------------LTQIQWWSV 263
T L M + L L K QR+ L+ + ++ W
Sbjct: 446 TILRLLGMMASMIAVVPLGLLKMRAFQRWTLSHHLCASRHLRRRLPVTASCMLALRPWRE 505
Query: 264 A--LHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRS 321
LH+ S I VSTDAS GWGA+ S+ G+WS Q HIN E+ V
Sbjct: 506 PRLLHQGSRIGRVLFCKVVSTDASLRGWGALCKGASVRGIWSTAQRQLHINHLELLTVFL 565
Query: 322 ALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARY 381
AL+ PVL+ + VL+++DN TVVSYI+++GGT+S LL+ +L H ++ +
Sbjct: 566 ALKHFHPVLEGQHVLVRTDNSTVVSYINRQGGTRSLPLLKLSRSLLLWCSVH---FLSTH 622
Query: 382 IPGKFNTWADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFAT 426
+P N D LSR L +W L P + I+ +G P+IDLFA+
Sbjct: 623 VPCHLNLGPDLLSRGGPLVREWRLHPLIVAQIWDLFGKPQIDLFAS 668
>gi|301622063|ref|XP_002940362.1| PREDICTED: LOW QUALITY PROTEIN: midasin-like [Xenopus (Silurana)
tropicalis]
Length = 6288
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 142/331 (42%), Gaps = 61/331 (18%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
F+ +F + + V + +F+ +D+ AY H+PI P HQ+FL ++ Y
Sbjct: 2762 TFIRFARFKMESLRSVIAAMNPQEFMTAVDIKDAYLHIPIFPPHQKFLRFAFKGHHYQFQ 2821
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
LPFGL +AP++F K+ + LR + V YLD L+ + RS+ + TL
Sbjct: 2822 ALPFGLTTAPRIFTKVMAAVTATLRKQALSVTPYLDILIKAPSYAAAQRSRD-TVLQTLT 2880
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ---RYLLT-------- 254
L W++N +S L P Q +LG+ ++ LP +K S IQ R LLT
Sbjct: 2881 ELSWTINYSKSTLTPSQRITFLGLTFDTRSQRVFLPPDKISKIQSLVRNLLTTPLSSVRF 2940
Query: 255 -------------------------------------LTQ-----------IQWWSVALH 266
LTQ ++WW H
Sbjct: 2941 AMRTLGSMVASMEAVPFSQFHLRELQWNILDQWTRKSLTQTMVLRHRTRASLRWWLHKTH 3000
Query: 267 RSSPIFPQAPQ-VFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALER 325
S P + ++TDAS GWGA+ + G+WS + IN+ E+ AV AL
Sbjct: 3001 LSVGKSLGDPHWLIITTDASLQGWGAVFQAQTAQGLWSHREAQLPINILELRAVHRALLH 3060
Query: 326 KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKS 356
L + IQSDN T V+Y++ +GGT+S
Sbjct: 3061 WQNQLSGLPIRIQSDNATTVAYLNHQGGTRS 3091
>gi|357631473|gb|EHJ78947.1| reverse transcriptase [Danaus plexippus]
Length = 242
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 96/147 (65%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
DF+Q D+LVKI++ QAYFH+ + +H+RFL VVY++ ++ +T L G++S P+ F +T
Sbjct: 60 DFIQDHDWLVKIEIHQAYFHLLVAETHRRFLRVVYKEEIFQLTALLLGVSSVPRTFGTVT 119
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
NW+A LRN G+ ++VYLDD LL NQ+ L +Q +A L+SL +N+++S+
Sbjct: 120 NWVAEILRNQGICLVVYLDDFLLANQNRNKLIAQVAETLAILKSLGRYLNVKKSMTELTH 179
Query: 223 TCQYLGIMWNPTLDSKSLPLEKQSTIQ 249
+YLG++W+ +LP K +I+
Sbjct: 180 KLEYLGLVWDIQSQIIALPTRKVLSIK 206
>gi|391332305|ref|XP_003740576.1| PREDICTED: enzymatic polyprotein-like [Metaseiulus occidentalis]
Length = 390
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 155/348 (44%), Gaps = 62/348 (17%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+ +IDL A+ +P+ S Q FL+ +R+ +YC + LPFGL ++P+VF KL + L
Sbjct: 16 YFARIDLQDAFLSIPVHESSQLFLAFHWREQMYCWSRLPFGLKTSPRVFTKLLKPVVARL 75
Query: 170 RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGI 229
R G+ +IVYLDD LL L LQSL +++N +S L P + YLG
Sbjct: 76 RQEGISLIVYLDDFLLIADSPSRLAVNVLRTTTLLQSLGYTINFAKSALEPARQVTYLGY 135
Query: 230 MWNPTLDSKSLPLEKQSTIQ---RYLLTLTQIQWWSV-----ALHRSSPIFPQ------- 274
+ + + S+PL K+ I+ R+LL L +I ++ L+ + I
Sbjct: 136 VLDASCMRLSVPLGKRIQIKEDIRHLLLLPRITLRALYRILGKLNALTTIVRSLRYHCAS 195
Query: 275 -APQVFVSTDASNS----------------GWGAIVDNHSLG------------------ 299
A VF +T S++ W A +DN + G
Sbjct: 196 LAKLVFETTRQSHTLDVQLRLPTATRVDLLWWEANLDNIASGPIRPPLVSLEITTDSSLE 255
Query: 300 --GVWSDHQ----------EMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSY 347
G W+D + + HIN E+ AV A++ + D + I++D+ +
Sbjct: 256 GWGAWTDGRASGGAWTYDDKRLHINALELKAVFLAVQSLAGQVSDTTIAIRTDSTNAMHC 315
Query: 348 IHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
I+ G +S KL R L A N+ L A +IPG N AD+LSR
Sbjct: 316 INNFGSLRSPKLDRLSRELRAWAFERNVHLKASHIPGVHNDIADALSR 363
>gi|357609714|gb|EHJ66600.1| putative transposon Ty3-I Gag-Pol polyprotein [Danaus plexippus]
Length = 421
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 235 LDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQV-FVSTDASNSGWGAIV 293
L S L QS IQ T++ WW + SPI P+ + TDAS+ WGA+V
Sbjct: 158 LQSNKLRKCPQSQIQFSEEVRTELIWWMENIGGQSPIHPKRMSTNHIITDASDIQWGALV 217
Query: 294 DNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGG 353
+N + G W HQ +H NLKEM AV +A+ K L++ V++Q+DN+TVV+Y+ EGG
Sbjct: 218 NNELIKGAWEHHQTNYHCNLKEMSAVLTAISVKAMELRNSTVILQNDNKTVVTYMKNEGG 277
Query: 354 TKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPD 401
T+S +LL L +L + NI L + ++PG NT A +S ++L D
Sbjct: 278 TRSHQLLELTRQLLNLLDQFNIVLRSHHLPGLLNTEA-CISETRKLRD 324
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 182 DLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLP 241
D+L D +L +Q + A+ L L W V E+ + P ++ YLG +WNP+ ++K LP
Sbjct: 48 DILSQQLDRDILTTQVQVAIQFLTDLGWWVYTEKLIQTPTRSIDYLGEVWNPSFNTKFLP 107
Query: 242 LEKQSTIQRYL 252
+K I++ L
Sbjct: 108 SDKLQRIRQIL 118
>gi|301624101|ref|XP_002941349.1| PREDICTED: hypothetical protein LOC100486655 [Xenopus (Silurana)
tropicalis]
Length = 2901
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 11/242 (4%)
Query: 33 LISWISDHPPNQDSFFEVAR---HTAILLLLCSG---RRVHDLTLLLSSRDG-FQDLGD- 84
+S +S P QD+F + + +++ + G R + ++ +DG F+ + D
Sbjct: 2024 FMSRLSPDPHKQDAFLSIIQDLLEEKVIVPVPPGDKFRGFYSNLFIVPKKDGSFRPVLDL 2083
Query: 85 ---RAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
AF+ +F + + V + +FLV +D+ AY HVPI P H +FL V ++
Sbjct: 2084 KHLNAFIRASRFKMESLRSVIAAMNPNEFLVALDIKDAYLHVPIFPPHWKFLRFVVKNKH 2143
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
+ T LPFGL SAP++F K+ + A LR+ G+ + YLDDLLL SQ +
Sbjct: 2144 FQFTALPFGLTSAPRIFTKIMSAAAASLRSRGVSITPYLDDLLLKAPSRPAATSQFSLVM 2203
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWW 261
TL +L W +N+ +S L P Q +LG++++ LP EK IQ + L
Sbjct: 2204 DTLTTLGWKINITKSRLTPAQRMPFLGMLFDTARQRVYLPPEKIGRIQSLVRQLIHTPQP 2263
Query: 262 SV 263
S+
Sbjct: 2264 SI 2265
>gi|270004735|gb|EFA01183.1| hypothetical protein TcasGA2_TC010509 [Tribolium castaneum]
Length = 921
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 83 GDRAFLSLK---KFHLINHFRVPD------FLQRGDFLVKIDLSQAYFHVPIRPSHQRFL 133
+R L+LK +F +HF++ D ++ F+ IDL AYF +PIR S ++++
Sbjct: 418 SERFILNLKHLNRFLKPSHFKMEDSRTVTKLIEENIFMATIDLKDAYFLLPIRKSDKKYI 477
Query: 134 SVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLL 193
+R+ LY TC+PFGL++AP F KL + ++LR + +VYLDD L+ +
Sbjct: 478 RFKFREQLYEFTCMPFGLSTAPYAFTKLMKPVTSFLRIHNIVCVVYLDDFLIFGKSEQSC 537
Query: 194 RSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEK 244
++ + + LQ+L + +N E+S P Q C++LG +++ SLP EK
Sbjct: 538 QNNVKTVITLLQNLGFIINFEKSNCQPSQRCKFLGFVFDSVKMRISLPREK 588
>gi|301619133|ref|XP_002938952.1| PREDICTED: transposon Ty3-G Gag-Pol polyprotein-like [Xenopus
(Silurana) tropicalis]
Length = 707
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 277 QVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVL 336
Q V+TDAS GWGA G WS + HIN E+ AV AL ++ K V
Sbjct: 434 QEIVTTDASRVGWGATWPPKVCQGTWSRQELKLHINALELKAVFYALLHWQTCMKGKHVR 493
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
IQSDN T V+Y++++GGT+S LREV + A H + L A +IPG N AD LSR
Sbjct: 494 IQSDNSTTVAYLNRQGGTRSASALREVSRIMTWAETHQVLLSAVFIPGIQNWEADYLSRT 553
Query: 397 KELP-DWHLLPEVTQHIFAQWGVPEIDLFAT 426
P +W L PE+ Q I +WG+P +D+ A+
Sbjct: 554 TLDPGEWKLKPEIFQQIVKKWGLPCLDIMAS 584
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 71 LLLSSRDGFQDLGDRAFLSL---KKFHLINHFRVPDF------LQRGDFLVKIDLSQAYF 121
L++ +DG G R L+L KF F++ L F+ KID+ AY
Sbjct: 161 FLVAKKDG----GFRPVLNLHPLNKFVRYERFKMESLPSIIRSLSPNLFMSKIDIKDAYL 216
Query: 122 HVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLD 181
H+PI HQRFL + + LPFGL SAP+VF K+ + LR G+ V YLD
Sbjct: 217 HIPINAFHQRFLRFAIGQSHFQFQALPFGLTSAPRVFTKVLGALLAVLRLQGVHVTAYLD 276
Query: 182 DLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKS-L 240
DL++ Q S R + TL+ W +N ++S+L P Q ++LG+ N T+D K L
Sbjct: 277 DLIVTAQSEKEANSHTRECLHTLRQHGWIINRKKSLLSPTQALEFLGMQIN-TVDRKVFL 335
Query: 241 PLEKQSTIQR 250
PL K T+Q+
Sbjct: 336 PLHKAITLQQ 345
>gi|301612402|ref|XP_002935710.1| PREDICTED: transposon Ty3-I Gag-Pol polyprotein-like, partial
[Xenopus (Silurana) tropicalis]
Length = 683
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 254 TLTQIQWWSVALHRSSPIFPQAPQ-VFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
T + WW + H Q P+ + ++TDAS GWGA++ + + G W+ + IN
Sbjct: 397 TRVAMTWWLNSTHLEKGRSLQEPKWLILTTDASLQGWGAVMGHLTAQGTWTAAETRLPIN 456
Query: 313 LKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVR 372
+ E+ AVR AL L + +QSDN T V+Y++ +GGT+S + L+EV + A
Sbjct: 457 ILEIRAVRLALCHWQNRLTGCDIKVQSDNATTVAYLNHQGGTRSRQALKEVSRILTWAEA 516
Query: 373 HNITLMARYIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLFAT 426
+ L A YIPG N AD LSRQ+ P +W L P + Q I A WG+PE+DL A+
Sbjct: 517 REVRLSAIYIPGLENWQADYLSRQRLDPGEWALNPGIFQDIVALWGLPEVDLMAS 571
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
AF+ +F + + V + +FLV +D+ AY HVPI P H +FL ++ + T
Sbjct: 170 AFIRFSRFKMESLRSVISAMNPNEFLVALDIKDAYLHVPIFPPHWKFLRFALKNQHFQFT 229
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
LPFGL SAP++F K+ + A LR+ G+ + YLDDLLL SQ + L
Sbjct: 230 ALPFGLTSAPRIFTKIMSAAAASLRSRGVSITPYLDDLLLKAPSLPAATSQLSLVMDFLT 289
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ 249
+L W +N +S L P Q +LG++++ T LP EK + IQ
Sbjct: 290 ALGWKINTAKSRLTPSQRMPFLGMVFDTTEQRVLLPPEKITRIQ 333
>gi|345485146|ref|XP_003425202.1| PREDICTED: hypothetical protein LOC100121748 [Nasonia vitripennis]
Length = 678
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 61 CSGRR---VHDLTLLLSSRDGFQDLGDRAFLSLKKFHLI---NHFRVPD------FLQRG 108
CS R V D+ L+ S + R L+LKK + H ++ D RG
Sbjct: 310 CSFRSNQFVSDMFLVPKSNEK-----SRLILNLKKLNKFIENRHLKLEDGRTVITLKSRG 364
Query: 109 DFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANY 168
F+ IDL AY+ +PI H++FL + D LY LPFGL+ AP VF K+ + ++
Sbjct: 365 CFMGSIDLKDAYYLIPIHEEHRKFLRFQFNDQLYEYLVLPFGLSVAPFVFTKIFKPVVSH 424
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
LR +G+ +++YLDD+L+ Q R + L+ L +N +S L P +TCQYLG
Sbjct: 425 LRRVGILLVIYLDDILILAQSYNECLESIRTVITVLEQLGIVINYTKSQLIPTRTCQYLG 484
Query: 229 IMWNPTLDSKSLPLEKQ 245
++N S LP++K+
Sbjct: 485 FLYNSQNMSVELPIDKR 501
>gi|384486631|gb|EIE78811.1| hypothetical protein RO3G_03516 [Rhizopus delemar RA 99-880]
Length = 918
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 35/258 (13%)
Query: 90 LKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L KF +HF++ L++ D + KIDL AY VP+ +RFL+ +++ T+Y
Sbjct: 340 LNKFVQCHHFKMEGIPALRSLLEKDDLICKIDLKDAYVVVPLHQQSRRFLTFLHQGTVYQ 399
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT 203
L FGL+ AP++F+KL + LR G++++ YLDD+ L + + + + +A
Sbjct: 400 YKSLAFGLSVAPRIFSKLMRYAVEPLRRKGIKLVYYLDDICLVAKSMKEMNANMQETLAH 459
Query: 204 LQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEK------------------- 244
L++L + +N ++S L P + ++LG +N + +LP +K
Sbjct: 460 LKNLGFLINYKKSSLQPQKIQEFLGFQFNTSTMQITLPQQKLKKIVSRIRQRDLAKSLHV 519
Query: 245 -----QSTIQRYLLTLTQIQWWS--VALHRSSPIFPQ---APQVFVSTDASNSGWGAIVD 294
+S Q + +QWW H PI + P + + DAS+SG+G
Sbjct: 520 HHQNWESPCQLTRKSFEDLQWWENFSGQHNGLPIHKEDFKTPAIDIYVDASDSGYGVSSA 579
Query: 295 NHSLGGVWSDHQEMWHIN 312
G W+ ++ IN
Sbjct: 580 ELETHGFWTKEEQSTSIN 597
>gi|270017202|gb|EFA13648.1| hypothetical protein TcasGA2_TC015886 [Tribolium castaneum]
Length = 872
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
F+ F + +H V L R F+ IDL AY +PI+ H+++L + LY TC
Sbjct: 356 FVETTHFKIEDHKVVCKLLSRNCFMAVIDLKDAYHLIPIQKCHRKYLRFTFLGRLYEYTC 415
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
+PFGL++AP VF KL + YLR+ + ++YLDD LL + + L+
Sbjct: 416 MPFGLSTAPYVFTKLMKPLVAYLRSHNLLSVLYLDDFLLMDNSYLQSLHNISMTCKMLEG 475
Query: 207 LRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR 250
L + +N E+S L P QT +YLG +++ + + LPL+KQ I +
Sbjct: 476 LGFLINYEKSQLTPNQTVRYLGFIYDSSNMTVRLPLDKQQCITK 519
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
Query: 258 IQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMF 317
+ WW V + + P + + +DAS SGWG S G W++ + HIN E+
Sbjct: 588 LNWWEVHISSRKSLLPPKFVLEIFSDASLSGWGIFCGGESTHGHWNEKERSKHINFLELL 647
Query: 318 AVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITL 377
A L+ L VL++ DN T V+YI++ GG K L + ++ + +
Sbjct: 648 AASFGLKCFAKNLSGCCVLLRIDNTTAVAYINRMGGVKHPHLHALAKEIWQWCEERKLWI 707
Query: 378 MARYIPGKFNTWADSLSRQ-KELPDWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
A YI NT AD SR+ ++ L P + I + +PE+DLFA+ N+
Sbjct: 708 FASYIKSSHNTEADWESRRLSPETEFELAPYAFRKICTFFQIPEVDLFASRNNT 761
>gi|327282171|ref|XP_003225817.1| PREDICTED: FYVE and coiled-coil domain-containing protein 1-like
[Anolis carolinensis]
Length = 2543
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 133/304 (43%), Gaps = 63/304 (20%)
Query: 155 PQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLE 214
P+VF K +A LR G+ V Y+DD L+ + L + LQSL VN E
Sbjct: 1567 PRVFTKCMAVVAAALRLRGVTVYPYIDDWLITSDSRNQLLIDIDITLFLLQSLGLIVNKE 1626
Query: 215 RSVLWPVQTCQYLGIMWNPTLDSKSLPLEK----QSTIQRYLL----TLTQIQ------- 259
+S L P Q+ Q++G + + LP ++ + IQ+ +L T QIQ
Sbjct: 1627 KSQLEPTQSIQFIGAIIDSVSQKAFLPEDRFQTLKDNIQKVILQKHITARQIQIILGHMA 1686
Query: 260 ----------------------------------------------WWSVALHRSS--PI 271
WW+ + + + P
Sbjct: 1687 STTSVTPHARLHMRILQAWFLSTYNPLVHNHNIRLSFPLEVRQSLFWWTNSNNVCAGLPF 1746
Query: 272 FPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
P P + ++TD+S GWGA N ++ G+W+ + HIN E+ AV AL+ P L
Sbjct: 1747 KPSDPTITLTTDSSTQGWGAHTGNLTVHGIWTKEEAKEHINYLELLAVEKALKAFEPALT 1806
Query: 332 DKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWAD 391
VV + +DN T Y++K+GGT S +LL+ L++ + N+ L A ++PG+ N AD
Sbjct: 1807 GHVVQVITDNTTTKYYLNKQGGTHSPQLLQLSVRLWNWCIERNVDLRAIHLPGEQNILAD 1866
Query: 392 SLSR 395
LSR
Sbjct: 1867 QLSR 1870
>gi|345484330|ref|XP_003425006.1| PREDICTED: hypothetical protein LOC100679608 [Nasonia vitripennis]
Length = 1189
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Query: 81 DLGDRAFLSLKKFHLI---NHFRVPDFLQR------GDFLVKIDLSQAYFHVPIRPSHQR 131
D R L+LK F+ I +HF++ D FL ID+ A++ +PI ++
Sbjct: 413 DGSHRFILNLKNFNKIVINHHFKIEDIKTVVQLTFPNYFLASIDIEDAFYLIPIHVESRK 472
Query: 132 FLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSV 191
FL ++ +Y CLPFGL +AP +F K+ +A Y+R+LG ++YLDD+L
Sbjct: 473 FLRFKVKEKIYEFVCLPFGLCTAPLIFTKIMKVVAKYVRSLGFTSVIYLDDILCIESSVN 532
Query: 192 LLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRY 251
+ ++ L+ L + +N ++S L P +CQ+LG + + + LP EK+ I +
Sbjct: 533 KCKKNINETISVLEWLGFRINYKKSNLTPSTSCQFLGFIIDTQKYAILLPNEKRKAIYKL 592
Query: 252 LLTLTQIQWWSV 263
L+ ++ S+
Sbjct: 593 LVEFLDLKRCSI 604
>gi|384499664|gb|EIE90155.1| hypothetical protein RO3G_14866 [Rhizopus delemar RA 99-880]
gi|384499676|gb|EIE90167.1| hypothetical protein RO3G_14878 [Rhizopus delemar RA 99-880]
Length = 190
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 83/150 (55%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
V L++ D+LV IDLS A+ H+P+ P+ ++FL ++ +Y T PFGLAS +F K
Sbjct: 7 VAHLLRKIDYLVSIDLSDAFLHIPVHPNSRKFLRFKWKSQVYQYTTTPFGLASVLYLFTK 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
+ I + R G+RV YLDD +L + L V LQ L W VN ++SVL P
Sbjct: 67 ICQPILEWARTQGIRVSAYLDDWILAAESKKLALQHTNMLVQQLQQLGWVVNTKKSVLSP 126
Query: 221 VQTCQYLGIMWNPTLDSKSLPLEKQSTIQR 250
+ ++LG + T + SLP +K ++R
Sbjct: 127 TRKLEHLGFCLDTTTMTASLPAKKIRDLRR 156
>gi|384501405|gb|EIE91896.1| hypothetical protein RO3G_16607 [Rhizopus delemar RA 99-880]
Length = 601
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 80 QDLGDRAFLSLKKFHL---INHFR------VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R+ +LK+ + HF+ V + D+LV IDLS A+ HV + P +
Sbjct: 357 KDSGIRSVFNLKRLNQYLDAPHFKMETIREVALMINPNDYLVSIDLSDAFLHVGLHPELR 416
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDS 190
RFL + ++D +Y FGL+++P VF+K+ I + R+ G R+ YL D +L
Sbjct: 417 RFLWLKWKDQVYQYCTAAFGLSTSPFVFSKVYRPILEHFRSQGYRISAYLYDWILAANTK 476
Query: 191 VLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR 250
L QA+ V LQ L W +N ++S L P Q ++L + N + SLPL++ ++R
Sbjct: 477 QLAIQQAQIVVNLLQQLGWLINFKKSALTPTQQLEHLSFVLNTKTMTASLPLKELRDLRR 536
>gi|384495518|gb|EIE86009.1| hypothetical protein RO3G_10719 [Rhizopus delemar RA 99-880]
Length = 640
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
++ F + +V +Q GD++ IDLS A+ H+P+ P H+R+L ++ ++Y
Sbjct: 376 YIDCPHFKMETIQQVSLMVQPGDYMTSIDLSDAFLHLPVHPEHRRYLRFYWKGSVYQFKT 435
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
PFGL+ P F K+T I + R G+R+ YLDD + + + + L S
Sbjct: 436 TPFGLSIVPYWFTKVTKPILEWARQQGIRLSAYLDDWITLGKTKAEATKHTQMILQCLTS 495
Query: 207 LRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEK 244
L W VNL++S P QT ++LG + + LP +K
Sbjct: 496 LGWPVNLKKSQTQPTQTLEHLGFELDSQTMTARLPGKK 533
>gi|301632434|ref|XP_002945290.1| PREDICTED: hypothetical protein LOC100497369, partial [Xenopus
(Silurana) tropicalis]
Length = 1160
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 32/242 (13%)
Query: 33 LISWISDHPPNQDSFFEVARH---TAILLLLCSGRRV---HDLTLLLSSRDG-FQDLGD- 84
+S +S PP Q +F + + +++ + S R + L+ RDG F+ + D
Sbjct: 535 FMSRLSQDPPKQSAFLAIIQDLLDERVIMQVPSEERFRGYYSNLFLVPKRDGSFRPILDL 594
Query: 85 ---RAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
FL +F + + V + ++LV +D+ AY H
Sbjct: 595 KKLNTFLRFSRFKMESLRSVIAAMGHNEYLVALDIKDAYLH------------------- 635
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
T LPFGL SAP++F K+ +A LR G+ + YLDDLLL SQ
Sbjct: 636 --FTALPFGLTSAPRIFTKIMAAVAASLRAQGVSITPYLDDLLLKAPSQSAATSQLELVT 693
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWW 261
+TL SL W +NLE+S L P + +LG++++ LP EK S IQ L Q Q
Sbjct: 694 STLTSLGWKINLEKSRLTPSRRMPFLGMIFDTAQQRVFLPPEKISQIQDLTRRLIQSQGP 753
Query: 262 SV 263
S+
Sbjct: 754 SI 755
>gi|66828689|ref|XP_647698.1| hypothetical protein DDB_G0267338 [Dictyostelium discoideum AX4]
gi|60475843|gb|EAL73775.1| hypothetical protein DDB_G0267338 [Dictyostelium discoideum AX4]
Length = 161
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+ VL P
Sbjct: 67 LLRHVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKIVLEP 126
Query: 221 VQTCQYLGIMWNPTLDSKSL----PLEKQSTI 248
Q+ +LG+ +DSKS+ P EK+ ++
Sbjct: 127 TQSITFLGL----QIDSKSMKLLVPKEKKKSV 154
>gi|167739|gb|AAA33195.1| ORF3 [Dictyostelium discoideum]
Length = 608
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 90/163 (55%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 70 TYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 129
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + + L
Sbjct: 130 TMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLV 189
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTI 248
L + +NLE+SVL P Q+ +LG+ + +P EK+ ++
Sbjct: 190 KLGFKLNLEKSVLEPTQSITFLGLQIDSVSMKLLVPKEKKKSV 232
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 26/204 (12%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN---- 295
+P + +S I +L+ L Q ++L FP V ++TDAS SG GA +
Sbjct: 295 IPQDVKSEISHWLIVLNQWNGKEISL------FPSYDYV-LTTDASESGAGATLKKGNKV 347
Query: 296 -HSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGG- 353
+ WS Q N +EM A+ A + L + IQ+DN T +SYI+++GG
Sbjct: 348 IKTWSFQWSTTQSNMSSNRREMLALLMAYQALCRKLNSCKLKIQTDNTTTLSYINRQGGQ 407
Query: 354 TKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-----------DW 402
+ +L E L+ ++ + L+ +IPG FN AD LSR E+ +W
Sbjct: 408 IQDLSVL--FEQLWKQCLKKKVNLIGEHIPGFFNVKADHLSRLSEMNHKSSTRVIKSYNW 465
Query: 403 HLLPEVTQHIFAQWGVPEIDLFAT 426
L EV I Q+G ++DLFA+
Sbjct: 466 QLKKEVFNRIQLQFGQIQMDLFAS 489
>gi|903714|gb|AAA70202.1| unknown protein [Dictyostelium discoideum]
Length = 608
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 90/163 (55%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 70 TYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 129
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + + L
Sbjct: 130 TMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLV 189
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTI 248
L + +NLE+SVL P Q+ +LG+ + +P EK+ ++
Sbjct: 190 KLGFKLNLEKSVLEPTQSITFLGLQIDSVSMKLLVPKEKKKSV 232
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 26/204 (12%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN---- 295
+P E +S I +L L Q ++L FP V ++TDAS SG GA +
Sbjct: 295 IPQEVKSEISHWLTVLNQWNGKEISL------FPSYDYV-LTTDASESGAGATLKKGNKV 347
Query: 296 -HSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGG- 353
+ WS Q N +EM A+ A + L + + IQ+DN T +SYI+++GG
Sbjct: 348 IKTWSFQWSTTQSNMSSNRREMLALLMAYQALCRKLNNCKLKIQTDNTTTLSYINRQGGQ 407
Query: 354 TKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-----------DW 402
+ +L E L+ ++ + L+ +IPG FN AD LSR E+ +W
Sbjct: 408 IQDLSVL--FEQLWKQCLKKKVNLIGEHIPGFFNVKADHLSRLSEMNHKSSTRVIKSYNW 465
Query: 403 HLLPEVTQHIFAQWGVPEIDLFAT 426
L EV I Q+G ++DLFA+
Sbjct: 466 QLKKEVFNRIQLQFGQIQMDLFAS 489
>gi|66802990|ref|XP_635338.1| hypothetical protein DDB_G0291223 [Dictyostelium discoideum AX4]
gi|60463654|gb|EAL61838.1| hypothetical protein DDB_G0291223 [Dictyostelium discoideum AX4]
Length = 300
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
++++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 135 SYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 194
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + A+ L
Sbjct: 195 TMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKAMDLLV 254
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPL 242
L + +NLE+SVL P Q+ +LG+ +DS S+ L
Sbjct: 255 KLGFKLNLEKSVLEPTQSITFLGLQ----IDSVSMKL 287
>gi|327278553|ref|XP_003224026.1| PREDICTED: serine/threonine-protein kinase WNK2-like [Anolis
carolinensis]
Length = 2370
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 60/101 (59%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RGD+ V IDL AYFHV IR H+RFL + + Y T LPFGL +AP+VF K+ +A
Sbjct: 1827 RGDYFVSIDLRDAYFHVAIRKGHRRFLCLKVLNQTYQFTVLPFGLVTAPRVFTKVVAVVA 1886
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL 207
+LR G+ V YLDD LL D VLLR + L SL
Sbjct: 1887 AHLRLQGITVFPYLDDWLLVESDPVLLRRHVDVTLTLLDSL 1927
>gi|340383595|ref|XP_003390302.1| PREDICTED: hypothetical protein LOC100640973 [Amphimedon
queenslandica]
Length = 878
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 158/372 (42%), Gaps = 72/372 (19%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG F+ K+DL AY HVP+ P Q L++ + Y T LPFGL+SAP++F + + ++
Sbjct: 472 RGAFMAKLDLKAAYRHVPVHPDDQSLLAIRWGGATYLDTALPFGLSSAPKIFTAMADGLS 531
Query: 167 NYLRNLGM-RVIVYLDDLLLG-NQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ G+ + YLDD Q + R AV + L + V E+ V+ P T
Sbjct: 532 WCMMCEGVSHFLHYLDDFFFCPPQHPGRCQQSLRVAVNLCEHLGFPVAPEK-VVGPATTL 590
Query: 225 QYLGIMWNPTLDSKSLPLEK----------------------QSTI-------------- 248
+LGI + LP K QS +
Sbjct: 591 VFLGIELDSIKMEMRLPQGKLERLQGSLGWWLTRESVTKKQLQSIVGQLSDAAVVVRPGR 650
Query: 249 ---------------QRYLLTLTQ-----IQWWSVALH--RSSPIFPQAPQV-FVSTDAS 285
Q +L+ L Q +QWW+ + +FP P + V++DAS
Sbjct: 651 TFIRSLIEASKIPRKQDHLVRLNQECRADLQWWNSFIQNWNGVALFPGRPLLETVTSDAS 710
Query: 286 NS-GWGAIVDNHSLGGVWSDHQ--EMW---HINLKEMFAVRSALERKLPVLQDKVVLIQS 339
S G GA++++ G W Q W +I KE+F V A + + V ++
Sbjct: 711 GSWGCGALLED---GSAWFQFQWPAPWRDANIATKELFPVVLAAALWGSRWRGRRVRYRT 767
Query: 340 DNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKEL 399
DNQ VVS + K L+ + +LF + +I +IPG+ N AD+LSR K +
Sbjct: 768 DNQAVVSALANY-SAKDPPLVHLLRSLFFIEAYFDIEHSVVHIPGEDNGAADALSRDKRV 826
Query: 400 PDWHLLPEVTQH 411
+ LLP+ + +
Sbjct: 827 TFFSLLPQASPY 838
>gi|384495516|gb|EIE86007.1| hypothetical protein RO3G_10717 [Rhizopus delemar RA 99-880]
Length = 264
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 283 DASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQ 342
DASNSGWG G W++ + IN +E+ A AL+ P L + VLI++DN
Sbjct: 38 DASNSGWGCAYLTQRAHGYWTNQEAQMSINWRELKAAFLALQ-AFPHLTNTTVLIRTDNT 96
Query: 343 TVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPD- 401
T ++YI+K+GGTKSF L+ L+ ++ + L++ ++ N AD SR+ +
Sbjct: 97 TSLAYINKQGGTKSFSLMTLATTLWKWCLQRGLMLVSSHVSDIHNCKADYESRRSFTKNL 156
Query: 402 WHLLPEVTQHIF-AQWGVPEIDLFA 425
W + PEV + +QWG +D+FA
Sbjct: 157 WQVKPEVFNSLLQSQWGPHGVDMFA 181
>gi|322784671|gb|EFZ11526.1| hypothetical protein SINV_09160 [Solenopsis invicta]
Length = 328
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 254 TLTQIQWWS-VALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
+ +QWW V +PI Q + + +D+S +GWGA +N + G WS + HIN
Sbjct: 123 AIEDLQWWKRVVPLGYNPIRVQKFNMEIYSDSSTTGWGAYCNNVRISGFWSKKERKCHIN 182
Query: 313 LKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVR 372
E+ A AL+ L +L++ DN T ++Y++K GG K L ++ +
Sbjct: 183 YLELKAAFLALQSFASELVSCEILLRLDNTTAIAYVNKAGGIKFPHLSELARKIWQWCEK 242
Query: 373 HNITLMARYIPGKFNTWADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFAT 426
I + A YIP N AD+ SR + +W L E+ + I +G +IDLFA+
Sbjct: 243 RKIWITASYIPSSENIEADAASRITNIDTEWELSDEIFKKIERSFGPFDIDLFAS 297
>gi|66828825|ref|XP_647766.1| hypothetical protein DDB_G0267210 [Dictyostelium discoideum AX4]
gi|60475915|gb|EAL73842.1| hypothetical protein DDB_G0267210 [Dictyostelium discoideum AX4]
Length = 968
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 92/177 (51%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 149 TYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 208
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + + L
Sbjct: 209 AMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLV 268
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWS 262
L + +NLE+ VL P Q +LG+ + +P EK+ + + + ++ S
Sbjct: 269 KLGFKLNLEKIVLEPTQLITFLGLQIDSVSMKLLVPKEKKKGVIKEIRNFLKLDCCS 325
>gi|301620378|ref|XP_002939554.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like [Xenopus
(Silurana) tropicalis]
Length = 4555
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 274 QAPQ-VFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD 332
Q PQ + ++TDAS GWGA++ + + G W+ + IN+ E+ AVR AL L
Sbjct: 2352 QEPQWLILTTDASLQGWGAVMGHLTAQGTWAAAETRLPINILEIRAVRLALCHWQNRLTG 2411
Query: 333 KVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADS 392
+ +QSDN T V+Y++ +GGT+S + L+EV + A + L A YIPG N AD
Sbjct: 2412 CDIKVQSDNATTVAYLNHQGGTRSQQALKEVSRILTWAEAREVRLSAIYIPGLENWQADY 2471
Query: 393 LSRQKELP-DWHLLPEVTQHIF 413
LSRQ+ P +W L P + Q I
Sbjct: 2472 LSRQRLDPGEWALNPGIFQDIM 2493
>gi|357601798|gb|EHJ63156.1| hypothetical protein KGM_09197 [Danaus plexippus]
Length = 129
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%)
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
++ V++Q+D +TV++YI EGGT+S LL+ L +L NI L +++PG NT
Sbjct: 3 FRNSTVILQNDKKTVLTYIKNEGGTRSRHLLKLTGQLLNLVDHFNIVLRLQHLPGLLNTE 62
Query: 390 ADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
AD LSR DW++ E T +F+ WG P++DLFAT
Sbjct: 63 ADRLSRNHAAVDWYIRDEETSRLFSLWGTPDLDLFAT 99
>gi|66828855|ref|XP_647781.1| hypothetical protein DDB_G0267240 [Dictyostelium discoideum AX4]
gi|60475930|gb|EAL73857.1| hypothetical protein DDB_G0267240 [Dictyostelium discoideum AX4]
Length = 818
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 74/127 (58%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+SVL P
Sbjct: 67 LLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEP 126
Query: 221 VQTCQYL 227
Q+ +L
Sbjct: 127 TQSITFL 133
>gi|340377297|ref|XP_003387166.1| PREDICTED: hypothetical protein LOC100634483 [Amphimedon
queenslandica]
Length = 1302
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 54/358 (15%)
Query: 81 DLGDRAFLSLKKFHLINH--FRVP-DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVY 137
D G ++ K F+L + F+ D+ + +L DL Y HV I HQ +L +
Sbjct: 597 DNGCAKIVAQKPFYLFKYEDFKTALDYFEEDAYLFTFDLKSGYHHVDIHSEHQTYLGFQW 656
Query: 138 RDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQA 197
Y T LPFGL++A +F KL + Y++ G+R+++YLDD ++ + S SQA
Sbjct: 657 EHKFYVFTVLPFGLSTACSIFTKLLWHVVKYIQACGIRLVLYLDDGIVSVKAS---ESQA 713
Query: 198 RAAVA----TLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLL 253
AA TL + E+S P + +LG ++ LD QR +
Sbjct: 714 IAASKLVEDTLVKAGLVIKKEKSNFVPPKHASWLG--FDIDLD------------QRIIK 759
Query: 254 TLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINL 313
T+ W SV L S G I+ S+ D + L
Sbjct: 760 TIMDCNWNSVRLVASVV-------------------GKII---SMCLALGDIARLRTRFL 797
Query: 314 KEMFAVRSALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV 371
+ RS+ + V + +L DN + S+ ++ G++ +L E A+F LA+
Sbjct: 798 YFLIQSRSSWHDSITVTAEAKDELLFWLDN--IGSFNGRQVGSRKTELQSETIAIFKLAI 855
Query: 372 RHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFATANS 429
++NI + +I N AD S + DW L V Q I AQWG ID A +++
Sbjct: 856 QNNIIEL-EWIQ---NEVADYFSCIVDYDDWGLSCSVFQLIEAQWGPHTIDRIAISSN 909
>gi|66828719|ref|XP_647713.1| hypothetical protein DDB_G0267304 [Dictyostelium discoideum AX4]
gi|60475858|gb|EAL73789.1| hypothetical protein DDB_G0267304 [Dictyostelium discoideum AX4]
Length = 833
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 82/148 (55%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY +V + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLYVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+SVL
Sbjct: 67 LLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEL 126
Query: 221 VQTCQYLGIMWNPTLDSKSLPLEKQSTI 248
Q+ +LG+ +P EK+ ++
Sbjct: 127 TQSITFLGLQIGSISMKLLVPKEKKKSV 154
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN---- 295
+P + +S I +L L Q ++L FP V ++TDAS SG GA +
Sbjct: 214 IPQDVKSEISHWLTVLNQWNGKEISL------FPSYDYV-LTTDASESGAGATLKKGNKV 266
Query: 296 -HSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGG- 353
+ WS Q N +EM A+ A + L + + IQ+DN T +SYI+++GG
Sbjct: 267 IKTWSFQWSTTQSNMSSNRREMLALLMAYQALCQKLNNCKLKIQTDNTTTLSYINRQGGQ 326
Query: 354 TKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKE 398
+ +L E L+ ++ + L+ +IPG FN A S ++E
Sbjct: 327 IQDLSVL--FEQLWKQCLKKKVNLIGEHIPGFFNVKAPQPSFREE 369
>gi|159465941|ref|XP_001691170.1| hypothetical protein CHLREDRAFT_180868 [Chlamydomonas reinhardtii]
gi|158270313|gb|EDO96179.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1199
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 149/378 (39%), Gaps = 94/378 (24%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRD----TLYCMTCLPFGLASAPQVFAKLTNWI 165
+L K DL+ + H + P +RF++ +R+ L LPFG + +P +F +LT
Sbjct: 507 YLGKRDLASGFHHCVLAPEARRFMA--FRNPATGALQRYVALPFGASQSPAIFCELTAAA 564
Query: 166 ANYL------RNLGMRVIVYLDD-LLLGNQDSVLLRSQARAAVATLQ-SLRWSVNLERSV 217
R L +R+ Y DD +++G Q + ++ + A V + W + ++
Sbjct: 565 TTIFQSECDRRGLQVRIFTYCDDFMIIGQQHADVVGAFAVMDVLGAELGFTWKLEKDQGR 624
Query: 218 LWPVQTCQYLGIMWNP-------TLDSKS---------LPLEKQSTIQRYLL-------- 253
Q ++LG+M++ T D + L +Q +QR L
Sbjct: 625 DTACQQLEFLGMMFDTVRLEMRITPDKRQRYAAAIRALLDAAEQGAVQRQDLESVAGKLT 684
Query: 254 ------------------------------------TLTQIQWWSVALHRSSPIFPQAPQ 277
L +QWW L S ++ A Q
Sbjct: 685 FVARACRWGYTFLQSVYDALFSLQQPAPRVLSLEPAALEDLQWWWEVLRADSSVWDGARQ 744
Query: 278 VFVS-------------------TDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFA 318
V+ TDAS +G+GA + L GV+S Q HI E+ A
Sbjct: 745 CTVAELELVRGEFADAQSGAVIFTDASGAGFGAAWEEAELQGVFSAQQRQSHIAWLELTA 804
Query: 319 VRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLM 378
V AL+ P L+ + VL++ DN V+ ++ G T+ + L +LA++ +
Sbjct: 805 VVRALQTWAPRLKGRRVLVRCDNTQAVAAVN-HGSTRVKEGRSLCRQLAELAMQAGFEVR 863
Query: 379 ARYIPGKFNTWADSLSRQ 396
A +I G NT AD LSRQ
Sbjct: 864 AEHIAGVANTRADRLSRQ 881
>gi|66828741|ref|XP_647724.1| hypothetical protein DDB_G0267326 [Dictyostelium discoideum AX4]
gi|60475869|gb|EAL73800.1| hypothetical protein DDB_G0267326 [Dictyostelium discoideum AX4]
Length = 818
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 72/127 (56%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L LR++ + VI YLDDLL+ S + + L L + +NLE+SVL P
Sbjct: 67 LLRPALRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMNLLVKLGFKLNLEKSVLEP 126
Query: 221 VQTCQYL 227
Q+ L
Sbjct: 127 TQSITLL 133
>gi|307196129|gb|EFN77817.1| hypothetical protein EAI_17025 [Harpegnathos saltator]
Length = 251
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Query: 256 TQIQWWSVALHRSSPIFPQA---PQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
T++ WW + ++ F A +F+ DAS SG +++N + G W++ ++ HIN
Sbjct: 3 TELIWWRTHIITTNSFFRLAVIDTTIFI--DASISGSRVVLENKQIHGFWTEIEKRQHIN 60
Query: 313 LKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVR 372
E+ A+ AL+ L+D+ +L++ DN T V I+K G K K + ++ A
Sbjct: 61 WLELKAIWFALQSFEAELKDRHILLRVDNTTAVVCINKMEGIKYPKFNKLATQIWSWAEN 120
Query: 373 HNITLMARYIPGKFNTWADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
+N L A +IP N AD LSR K L +W L I +G PE+DLFAT+ +A
Sbjct: 121 NNNWLHAEHIPSTSNVVADRLSRLKNLDTEWELATYAFNKITTSFGFPELDLFATSLNA 179
>gi|440797650|gb|ELR18732.1| reverse transcriptase, partial [Acanthamoeba castellanii str. Neff]
Length = 406
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 278 VFVSTDASNSGWGAIVDNHSL--GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV 335
V + T+AS SGWGA +L G WS HIN+ ++ VR+ + P LQ K +
Sbjct: 149 VILETNASLSGWGASSSCQTLTAAGWWSSDDSKSHINILKLATVRNTILALQPHLQGKAI 208
Query: 336 LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
L++ +N V++++ GG +S + R + + L R +I L + Y+PG N+ AD LSR
Sbjct: 209 LMRCNNIATVAHLNHMGG-QSVAMNRVQKEIHLLCKRLHIQLSSAYLPGLCNSEADRLSR 267
Query: 396 QKELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
+WHL E + I +WG ID AT
Sbjct: 268 LHPHHEWHLSREAFESINKKWGPHSIDQTAT 298
>gi|301611041|ref|XP_002935061.1| PREDICTED: hypothetical protein LOC100489410 [Xenopus (Silurana)
tropicalis]
Length = 952
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 104/249 (41%), Gaps = 63/249 (25%)
Query: 195 SQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLT 254
SQ + +TL SL W +NLE+S L P + +LG++++ L LP EK IQ
Sbjct: 564 SQLKLVTSTLTSLGWKINLEKSRLTPSRRMPFLGMIFDTALQRVFLPPEKIFRIQDLTCR 623
Query: 255 LTQI--------------------------------------QWWSVALHRSSPIFP--- 273
L Q QW +L + I P
Sbjct: 624 LIQSPSPSIRFAMHVLGSMVSSIEAVPFAQFHLRDLQWNILDQWTRTSLSQRFRILPKTQ 683
Query: 274 ------------------QAPQ-VFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLK 314
Q P ++TDAS SGWGA++D+ S G WS + + IN+
Sbjct: 684 ASLEWWLNSSQLAKGRSLQEPHWRLLTTDASLSGWGAVLDHLSAQGTWSKTEALLPINIL 743
Query: 315 EMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHN 374
E+ AVR AL L + + +QSDN T V+Y++ +GGT+S + LREV + A
Sbjct: 744 EIRAVRLAL---LHWQHLQAIKVQSDNATTVAYLNHQGGTQSCQALREVSLILTWAETQE 800
Query: 375 ITLMARYIP 383
+R P
Sbjct: 801 SRFDSRLHP 809
>gi|345484016|ref|XP_003424926.1| PREDICTED: hypothetical protein LOC100677975 [Nasonia vitripennis]
Length = 791
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 3/172 (1%)
Query: 257 QIQWW-SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKE 315
+++WW S L + I + + ++AS +GWGAI N G W+ + HIN E
Sbjct: 436 ELKWWQSQILIAKNKIRSSNFDLEIFSNASTTGWGAICGNKKANGFWNREEREIHINFLE 495
Query: 316 MFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNI 375
+ A AL+ +K +L++ DN T ++YI+K GG K +L + +++ + I
Sbjct: 496 IKAAFLALKCFAAHSLNKQILLRIDNITALAYINKMGGIKHKELHALTKVIWEWCIEREI 555
Query: 376 TLMARYIPGKFNTWADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFAT 426
+ A YI K N AD SR + +W L Q I ++G P IDLFA+
Sbjct: 556 WIFAEYIASKENI-ADEGSRITNVDTEWELANFAFQKIVKEFGYPSIDLFAS 606
>gi|66828695|ref|XP_647701.1| hypothetical protein DDB_G0267342 [Dictyostelium discoideum AX4]
gi|60475845|gb|EAL73777.1| hypothetical protein DDB_G0267342 [Dictyostelium discoideum AX4]
Length = 925
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++A ++F
Sbjct: 114 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAHRIFTM 173
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+SVL P
Sbjct: 174 LLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLIKLGFKLNLEKSVLEP 233
Query: 221 VQTCQYL 227
Q+ L
Sbjct: 234 TQSITLL 240
>gi|66799767|ref|XP_628809.1| hypothetical protein DDB_G0294180 [Dictyostelium discoideum AX4]
gi|60462163|gb|EAL60396.1| hypothetical protein DDB_G0294180 [Dictyostelium discoideum AX4]
Length = 558
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 75/133 (56%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 426 TYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 485
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + + L
Sbjct: 486 TMPFGLSTAPRIFTMLLRPVLRMLRDIKVSVIAYLDDLLIVGSTKEECLSNFKKTMELLV 545
Query: 206 SLRWSVNLERSVL 218
L + +NLE+SVL
Sbjct: 546 KLGFKLNLEKSVL 558
>gi|301605299|ref|XP_002932298.1| PREDICTED: treslin-like [Xenopus (Silurana) tropicalis]
Length = 2063
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 64 RRVHDLTLLLSSRDG-FQDLGDRAFLS----LKKFHLINHFRVPDFLQRGDFLVKIDLSQ 118
R ++ L+ DG F+ + D FL+ +KF + + LQ GD +V +DL
Sbjct: 892 RGIYSRVFLVPKPDGRFRLIIDLKFLNQYIRKEKFRMETIKSAINILQEGDLMVTLDLKD 951
Query: 119 AYFHVPIRPSHQRFL--SVVYRDTLYCMT--CLPFGLASAPQVFAKLTNWIANYLRNLGM 174
AY HVPI P ++FL +V ++L+ + LPFG+ SA +VF K+ IA R G+
Sbjct: 952 AYLHVPIHPLSRKFLRIAVYLGNSLHHLQFRALPFGINSATRVFTKVIVVIAAAFRQRGV 1011
Query: 175 RVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
V+ YLDD L+ L ++ L S W +N E+S+L P
Sbjct: 1012 FVVPYLDDWLIKASSLTQLSRHQDLVISMLSSHGWIINEEKSILQP 1057
>gi|307197138|gb|EFN78492.1| hypothetical protein EAI_11211 [Harpegnathos saltator]
Length = 134
Score = 78.6 bits (192), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Query: 248 IQRYLLTLTQIQWWSVALHR--SSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDH 305
I +Y+L + WW V+L SS I + + +DASN+GWGA + W+
Sbjct: 1 IPKYILE--NLDWWKVSLTSGSSSTIKRDKFNLVIYSDASNTGWGATDGRRKIYKFWNKE 58
Query: 306 QEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
Q+ WHIN KE+ AV+ A+E ++ +L++ DN T ++YI+K G K K
Sbjct: 59 QKSWHINYKELLAVKYAVENLASERRNCRILLRVDNTTAIAYINKMGSVKFQKFNELARK 118
Query: 366 LFDLAVRHNITLMARY 381
++ A + I LMA Y
Sbjct: 119 IWQWAEKRKIILMASY 134
>gi|384501230|gb|EIE91721.1| hypothetical protein RO3G_16432 [Rhizopus delemar RA 99-880]
Length = 359
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 94 HLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLAS 153
H+IN Q G L + A+ H+ + PS +++L V+++ L+ PFGL
Sbjct: 167 HIIND-------QTGRSLSRYRSFDAFLHLHLHPSSRKYLRFVWQNRLFQFRTTPFGLNI 219
Query: 154 APQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNL 213
P F K T I + R G+R+ YLDD ++ + + + + ++ L++L W VN
Sbjct: 220 VPFWFTKTTRLIVQWARQQGIRLSAYLDDWIIMGETKEIFQRHLQKVLSCLRNLGWLVND 279
Query: 214 ERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQ 257
E+S P T ++LG + N SLP +K IQR L L Q
Sbjct: 280 EKSNFEPSPTIEHLGFVLNTITMQASLPGKKLRDIQRSLKQLFQ 323
>gi|340381946|ref|XP_003389482.1| PREDICTED: hypothetical protein LOC100637556 [Amphimedon
queenslandica]
Length = 550
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 150/389 (38%), Gaps = 63/389 (16%)
Query: 62 SGRRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYF 121
S R + DL+ S D D + S++ + N + L RG L K DL AY
Sbjct: 115 SRRMIVDLSC--PSGSSVNDGIDPSLASIRYASVDNAVEIIRSLGRGALLTKFDLKDAYR 172
Query: 122 HVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIV-YL 180
VP+ PS L +++ ++ CLPFGL SAP+ F+ + + +A G+ V YL
Sbjct: 173 IVPVHPSDHHRLGIMWEGAIFVDCCLPFGLRSAPKFFSAIADSLAWVFGCYGLVSQVHYL 232
Query: 181 DDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM-----WNPTL 235
DD L S + +L S+ ++ P +LGI+ W L
Sbjct: 233 DDFLFLEPPGHTNSSIVPLVSSICCTLGVSLAAHKTE-GPATCLTFLGIVVDFTHWELRL 291
Query: 236 DSKSLPL--------EKQSTIQR------------------------YLLTLTQ-----I 258
L L + S+ +R + + LT+ I
Sbjct: 292 PDDKLELVYALLQVWSRHSSCRRRELESFLGHLSHAAVVIRQARQPHFFVRLTRGAKADI 351
Query: 259 QWWSVALHR---SSPIFPQAPQVFVSTDASNS-GWGAIVDNHSLGGVWSDHQEMWHINLK 314
WW L R S P P V V TDA+ S G G + G W Q W L+
Sbjct: 352 SWWLCFLRRWNGRSFFPPSTPSVHVYTDAAGSFGCGGF----QVRGPW--FQLAWPGELR 405
Query: 315 EMFAVRSALERKLPVL------QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFD 368
AV + + + + +V SDN+ VV ++K G + L + L
Sbjct: 406 RSIAVLELIPVVIAAMLWGSSWRGSMVCFHSDNEAVVKVLNK-GFARDSSLSHLLRCLAL 464
Query: 369 LAVRHNITLMARYIPGKFNTWADSLSRQK 397
LA H + A ++PG N AD+LSR
Sbjct: 465 LAAFHGFHICAIHVPGWLNDAADALSRNN 493
>gi|301624526|ref|XP_002941553.1| PREDICTED: hypothetical protein LOC100487066 [Xenopus (Silurana)
tropicalis]
Length = 1511
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 329 VLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNT 388
++ K V IQSDN T V+Y++++GGT+S LREV + A H + L A +IPG N
Sbjct: 507 AMKGKHVRIQSDNSTTVAYLNRQGGTRSASALREVSRIMTWAETHRVLLSAIFIPGIQNW 566
Query: 389 WADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEIDLFAT 426
AD LSR P +W L E+ Q + A+WG P +D+ A+
Sbjct: 567 EADYLSRTTLDPGEWKLKEEIFQQLVAKWGQPCLDVMAS 605
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVP 124
L+S +DG G L KF F++ L F+ KID+ AY H+P
Sbjct: 211 FLVSKKDG----GVLNLHPLNKFVRYERFKMESLPSIIRGLTPNVFMSKIDIKDAYIHIP 266
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
I P HQRFL + Y L FGL SAP+VF K+ + +R G+ V YLDDL+
Sbjct: 267 INPFHQRFLRFTLGQSHYQFQALSFGLTSAPRVFTKVLGALLAVVRLQGIHVTAYLDDLI 326
Query: 185 LGNQ 188
L Q
Sbjct: 327 LTAQ 330
>gi|301623455|ref|XP_002941032.1| PREDICTED: hypothetical protein LOC100491299 [Xenopus (Silurana)
tropicalis]
Length = 704
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 135/311 (43%), Gaps = 32/311 (10%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAP---QVFAKLTN 163
+G L K D+ A+ +PI P L ++ + CLP G + + ++FA
Sbjct: 373 QGSLLAKTDIESAFRLLPIHPDSHYLLGFHFQGAYFYDKCLPMGCSISCKYFEMFATFLE 432
Query: 164 WIANYLRNLGMRVIVYLDDLLL-----GNQDSVLLRSQARAAVATLQSLRWSVNLERS-V 217
W+ + V YLDD L N S+LL + S ++ V + R
Sbjct: 433 WVIKFESGANF-VTHYLDDFLFLGPRGSNTCSILLNTFLH------YSSKFGVPIAREKT 485
Query: 218 LWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL--------LTLTQIQWWSVALHRSS 269
+ P + Q+LGI + LP K S ++ + L L IQ +
Sbjct: 486 VAPTTSLQFLGIEIDTMHMEFRLPEAKISKLKSLIASALVAKKLKLKHIQSLIGTCWQED 545
Query: 270 PIFPQAPQVFVSTDASNS-GWGAIVDNHSLGGVWSDH---QEM-WHINLKEMFAVRSALE 324
I A Q+F TDA+ S G+GA + W QE+ ++ L E+F V ALE
Sbjct: 546 FIENSAIQLF--TDAAGSTGFGAYLSGRWCCAAWPSEWRKQELTGNLVLLEIFPVLVALE 603
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPG 384
L ++ +L+ N VV I+ KS ++R + L LA+ HNI L A++IPG
Sbjct: 604 IWGSWLANRRILLFCHNMGVVQVINNLSA-KSPPVVRVMRHLVFLALMHNIWLRAKHIPG 662
Query: 385 KFNTWADSLSR 395
N AD+LSR
Sbjct: 663 CQNILADALSR 673
>gi|322784669|gb|EFZ11524.1| hypothetical protein SINV_02587 [Solenopsis invicta]
Length = 82
Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
F+ +DL AY VP+ H++FL + D LY TCLPFGL+++P VF KL + N+L
Sbjct: 6 FMGSLDLKDAYHVVPVHKDHRKFLRFKFLDKLYQFTCLPFGLSTSPYVFTKLMKPVMNHL 65
Query: 170 RNLGMRVIVYLDDLLL 185
R G+ ++YLDD+L
Sbjct: 66 RLRGIVTVIYLDDILF 81
>gi|340383235|ref|XP_003390123.1| PREDICTED: hypothetical protein LOC100636300 [Amphimedon
queenslandica]
Length = 857
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 143/336 (42%), Gaps = 53/336 (15%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG F+VK D+ +AY ++PI P L V + T++ LPFGL SAP++F+ + +
Sbjct: 505 RGAFIVKADIKEAYRNIPIHPDDYGLLGVQWNGTVFVDKFLPFGLRSAPKIFSAVADAAQ 564
Query: 167 NYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA--AVATLQSLRWSVN--LERSVLWPV 221
L G+R V+ YLDD L + R+QA A + TL S+ S+ LE S L
Sbjct: 565 WVLTENGVRQVLHYLDDFAL------VERNQATALESKITLCSVFGSLGLPLEPSKLEGP 618
Query: 222 QTC-QYLGIMWNPTLDSKSLPLEKQSTI--------------QRYLLTLTQIQWWSVALH 266
TC +LGI + LP +K + +R L +LT + + +
Sbjct: 619 TTCLTFLGIEVDTVSLQLRLPTDKLDRLLNELKEVQGRKVISKRELQSLTGLLQHACKVV 678
Query: 267 RSSPIFPQ----------APQVFVSTDASN-----------SGWGAIV----DNHSLGGV 301
R F Q AP + + + S W + HS +
Sbjct: 679 RPGRAFLQRLYALEKVGSAPDHHIRLNVAARADVMWWQLFVSHWNGVSMLCDPKHSKADI 738
Query: 302 -WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLL 360
W E I +KE+ V A + K+++ DNQ VV +I +K L+
Sbjct: 739 QWPLDLEPTSIQVKELIPVVIAAALFGRSWRGKLIVFSVDNQAVV-HILNNTHSKESHLM 797
Query: 361 REVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
+ L A ++ A +IPG+ NT AD+LSR
Sbjct: 798 HLIRLLAFYASYYDFWFRAEHIPGRCNTLADALSRN 833
>gi|391331107|ref|XP_003739992.1| PREDICTED: uncharacterized protein LOC100907926 [Metaseiulus
occidentalis]
Length = 416
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Query: 260 WWSVALHRSS--PIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMF 317
WWS L + PI + ++TD+S GWGA + GG W+ H + HIN E+
Sbjct: 85 WWSENLDMIAVGPIKLPLVSLEITTDSSLKGWGAWCGQRASGGTWNIHDQNLHINALELK 144
Query: 318 AVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITL 377
A+ A+++ +D + I++DN T + ++ G S L +L+ A NI L
Sbjct: 145 AIFLAVQKLADDQKDTTIAIRTDNTTAMHCVNNFGSLHSSTLNSLTRSLWAWAFERNIFL 204
Query: 378 MARYIPGKFNTWADSLSRQK-ELPDWHLLPEVTQHIFAQWGVPEIDLFA 425
A +IPG N AD LSR + + L + + + A G +IDLFA
Sbjct: 205 KATHIPGTCNDRADLLSRTTCDNHSFSLHDAIFKRLDAAQGPFDIDLFA 253
>gi|327286490|ref|XP_003227963.1| PREDICTED: cadherin-related family member 2-like [Anolis
carolinensis]
Length = 2278
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 76 RDGFQ----DL-GDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+DG Q DL G +++ KKF ++ + L G + IDL AYFHV I P H
Sbjct: 1437 KDGGQRPVLDLRGLNNYINPKKFRMVTLSTILPLLPDGAWFASIDLKDAYFHVAIAPQHH 1496
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYL 180
R+L+ + +C LPFG+++AP+VF K+ +A +LR G+ V Y+
Sbjct: 1497 RYLAFMVAQKAFCFQVLPFGISTAPRVFTKVMAVVAAHLRLQGITVYPYI 1546
>gi|440790615|gb|ELR11896.1| transposon Ty3-G Gag-Pol polyprotein-like family protein, putative
[Acanthamoeba castellanii str. Neff]
Length = 447
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 126/297 (42%), Gaps = 50/297 (16%)
Query: 177 IVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM---WNP 233
+ Y+D++++ +Q R + + L W VN E+S P Q ++LG+M ++
Sbjct: 1 MAYMDNVIILSQSYTEARHHTTFTLHLFKKLGWVVNTEKSDTTPSQCKEFLGLMPTTYDM 60
Query: 234 TLDSKS-----------------------LP---------------LEKQSTIQRYLLTL 255
TL S LP + S+I+ T
Sbjct: 61 TLTVSSDTPRHMDQSQSVVSQGVALTRAILPAKLLLRNAYRDIGRWMSWNSSIKLSPATT 120
Query: 256 TQIQWWSVALH----RSSPIFPQAPQVFVSTDASNSGWGAIVDNHSL--GGVWSDHQEMW 309
++ W L R + + P + + T+AS SGWGA +L G W
Sbjct: 121 NDLEEWRHGLSTWNGRITVLRPH--NIILETNASLSGWGASSSCWTLTAAGWWLSDDSKS 178
Query: 310 HINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDL 369
HIN+ E+ VR+ + LQ KV+L++ DN V++++ GG +S + R + + L
Sbjct: 179 HINVLELAVVRNTILALQLHLQGKVILMRCDNIATVAHLNHMGG-RSIAMNRVWKEIHLL 237
Query: 370 AVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
R +I L + Y+PG N+ AD LS WHL E + I +WG I+ AT
Sbjct: 238 CERLHIQLSSAYLPGLCNSEADCLSHLHPHHKWHLSREAFKLINKKWGPHSINQTAT 294
>gi|384499549|gb|EIE90040.1| hypothetical protein RO3G_14751 [Rhizopus delemar RA 99-880]
Length = 196
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 130 QRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
Q L+ VY+ YC + FGLAS+P VF K+ I + + R+ YLDD +L
Sbjct: 38 QGLLNQVYQ---YCT--ISFGLASSPFVFTKVCRPILEHFYSQSFRISAYLDDWILAAST 92
Query: 190 SVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ 249
L Q A VA LQ L W VN ++S+L P Q +LG + N + + SLP++K I+
Sbjct: 93 KQLAIQQVLAVVALLQQLGWMVNFKKSILTPTQQLGHLGFVSNTSTMTASLPMKKLRDIR 152
Query: 250 RYL 252
R +
Sbjct: 153 RSI 155
>gi|340383518|ref|XP_003390264.1| PREDICTED: hypothetical protein LOC100635540 [Amphimedon
queenslandica]
Length = 1253
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG + KIDL AY VP+RP L + + Y LPFGL SAP +F+ + + +A
Sbjct: 571 RGALMAKIDLKSAYRMVPVRPEDSLLLGIQWEGITYADFALPFGLRSAPILFSAVADGLA 630
Query: 167 NYLRNLGMRV-IVYLDDLLL-GNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
L G+ I YLDD G S++ R A+ Q L V E+ V P +
Sbjct: 631 WALFRSGVEFSIHYLDDFFFCGPPSSLVCRRAMEIALPLCQKLGLPVAPEK-VEGPATSL 689
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYL 252
+LGI N S SLP EK ++++ L
Sbjct: 690 TFLGIQLNSDAMSLSLPQEKLASLKLRL 717
>gi|440792310|gb|ELR13538.1| RNAdirected DNA polymerase subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 774
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 121/315 (38%), Gaps = 50/315 (15%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG +++ DL+Q Y H+ + + L D + LPFGL +P VF K+ +
Sbjct: 496 RGWWMITFDLAQGYHHLLVEEESCQLLGFRVGDRWFRYRVLPFGLRISPWVFTKVVRAMV 555
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA-TLQSLRWSVNLERSVLWPVQTCQ 225
R G+ V YLDD ++ D LR + TL LRW + P Q +
Sbjct: 556 RDWRRQGIVVTSYLDDFVVMAPDCEALRRIRDTVITPTLDQLRWLREPTKGEWEPTQCAE 615
Query: 226 YLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDAS 285
L ++ + WS L R P+ + FVS A
Sbjct: 616 VLALV---------------------------VVRWSHTLRRHRPL---SASTFVSLQAR 645
Query: 286 NSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVV 345
G ++ + W I+ KEM V A++ + + V +SDN VV
Sbjct: 646 --------------GAFAADKLAWPIHHKEMKPVELAVDTLGHYVAGRWVEFESDNVMVV 691
Query: 346 SYIHKEGGTKSF--KLLREVEALFDLAVRHNITLMARYIPGKF-NTWADSLSRQKELPDW 402
+Y+ GG + ++R V A AR+I G N AD LSR + DW
Sbjct: 692 AYLRDGGGPDPWMTDVVRRV--WLRAAAEGCGVYNARWIRGSTDNREADWLSRYSDTDDW 749
Query: 403 HLLPEVTQHIFAQWG 417
L + + Q+G
Sbjct: 750 ELSWDTVAELEQQFG 764
>gi|66799593|ref|XP_628722.1| hypothetical protein DDB_G0294346 [Dictyostelium discoideum AX4]
gi|60462053|gb|EAL60309.1| hypothetical protein DDB_G0294346 [Dictyostelium discoideum AX4]
Length = 541
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 61/100 (61%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 406 TYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 465
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+PFGL++AP++F L + LR++ + VI YLDDLL+
Sbjct: 466 TMPFGLSTAPRIFTMLLRHVLRMLRDINVSVIAYLDDLLI 505
>gi|301603955|ref|XP_002931647.1| PREDICTED: uncharacterized protein KIAA0467-like [Xenopus
(Silurana) tropicalis]
Length = 3874
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 318 AVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITL 377
VRSA R P+ IQ+DN T V+Y++ +GGT+S ++E + A + + +
Sbjct: 892 GVRSARNRGKPIR------IQTDNATAVAYVNHQGGTRSKGAMQEAAHILAWAEENVLAI 945
Query: 378 MARYIPGKFNTWADSLSRQK-ELPDWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
A +IPG N AD LSR+ + +W L P+V Q++ + WG PE+DL A+ +++
Sbjct: 946 SAIHIPGVDNWTADFLSRETLDQGEWALHPQVFQNLTSIWGTPEVDLMASRHNS 999
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%)
Query: 128 SHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGN 187
+H RFL + LPFGLA+ P+VF K+ I LR+ G+ + YLDDLL+
Sbjct: 653 AHHRFLRFAVLGKHFQFVALPFGLATTPRVFTKVLAPIMALLRSQGISITPYLDDLLIKA 712
Query: 188 QDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
S + TLQS W +NL++S L P Q +LG ++N
Sbjct: 713 PTFHQNLSALNQVIQTLQSHGWIINLKKSSLTPSQEMTFLGTVFN 757
>gi|384493499|gb|EIE83990.1| hypothetical protein RO3G_08695 [Rhizopus delemar RA 99-880]
Length = 314
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 88 LSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCL 147
L +K F + ++ + LQ GDFL I L A+ H+ I P H+ L ++ Y L
Sbjct: 100 LPIKHFKMETMQKITNLLQPGDFLTSIYLQDAFHHILIHPRHRHLLRFRWKQQTYQYRVL 159
Query: 148 PFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL-LGN 187
PFGL+ +P +F K+ + + R G+++ YLDDLL +GN
Sbjct: 160 PFGLSLSPLIFTKVLKPVVKWARRQGIQITAYLDDLLIMGN 200
>gi|327268405|ref|XP_003218988.1| PREDICTED: lysine-specific demethylase 6A-like [Anolis
carolinensis]
Length = 1580
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 314 KEMFAVRSALERKL-----------PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
+E FA +A ER + PV K V +Q+DN + YI+K+ GT S KL+
Sbjct: 37 EEDFASLTAEERGVLAGLDSPQGFCPVNPHKTVQVQTDNMVAMYYINKQDGTGSRKLMSL 96
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-DWHLLPEVTQHIFAQWGVPEI 421
+ + H++ L+A +IP N ADSLSR DW L PE +F WG P +
Sbjct: 97 STRFWLWCIAHDVFLVALHIPVLQNGLADSLSRMTSSSHDWQLDPETLHSVFDDWGWPTL 156
Query: 422 DLFATANSAAFLVQGGPL 439
DLFA+ +++ G L
Sbjct: 157 DLFASRHNSQLPRYGARL 174
>gi|340384546|ref|XP_003390772.1| PREDICTED: enzymatic polyprotein-like [Amphimedon queenslandica]
Length = 578
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 68/367 (18%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
++ K+D+ AY VP+ P+ Q L + +R +C LPFGL SAP +F + + ++ +
Sbjct: 149 WMAKLDIQSAYRKVPVHPADQPLLGIHWRGVTFCDRALPFGLRSAPLLFTAVADGLSWAM 208
Query: 170 RNLGM-RVIVYLDDLLLGNQDSVLLRSQA-RAAVATLQSLRWSVNLERSVLWPVQTCQYL 227
G+ +I YLDD ++ QA R AV Q L + V+ P T +L
Sbjct: 209 ECCGVHNLIHYLDDFFFCSRAESSECEQALRTAVNLCQRLGLPAAPHK-VVGPCTTITFL 267
Query: 228 GIMWNPTLDSKSLPLEKQSTI----------QRYLLTLTQIQWWSVALHRSSPI------ 271
GI + LP +KQ+ + +R +T Q+Q L+ ++ I
Sbjct: 268 GIEIDSCRWELRLPEDKQTRLMSILQEWKHDKRQSVTKKQLQSLVGLLNYAARIVRPGRP 327
Query: 272 ----------FPQAP----QVFVSTDASNSGWGAIV---DNHSL-------GGVWSDHQE 307
PQ P ++ V + S W + + S V+SD
Sbjct: 328 FTRSLIEASKIPQEPDHWVRLNVECRSDISWWQEFLRFWNGRSFYPGRPWAATVYSDASG 387
Query: 308 MWHINL--------------KEMFAVRSALERKLPVLQDKVV----------LIQSDNQT 343
W + +++ A + LP++ V L + DN
Sbjct: 388 RWGCGAVCLPVGQWFQVQWPESWYSISIAAKELLPIVVSVAVWGREWAGLRVLSRCDNDA 447
Query: 344 VVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWH 403
VV+ + + G K L ++ L L+ H I L+A ++ G+ N AD+LSR +
Sbjct: 448 VVACL-RSGSAKDPLLAHLLKILALLSALHKIQLVAVHVAGRSNGAADALSRGNSKLFFS 506
Query: 404 LLPEVTQ 410
L+P+ ++
Sbjct: 507 LIPQASR 513
>gi|313236395|emb|CBY11713.1| unnamed protein product [Oikopleura dioica]
Length = 1568
Score = 69.3 bits (168), Expect = 4e-09, Method: Composition-based stats.
Identities = 88/370 (23%), Positives = 149/370 (40%), Gaps = 84/370 (22%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++GD +VK D + Y +P+ ++ + + L FGL +AP ++ +
Sbjct: 224 LLKKGDLMVKYDDKKGYHQMPLAKDSRKMACFEWGGKTFVNNILCFGLPAAPGIYQSMNQ 283
Query: 164 WIANYLRNLGMRVIVYLDDLLL------GNQDSVLLRS-----QARAAVATLQSLRWSVN 212
N+LR G++ +YLDD L+ Q L+ +A ATL +L VN
Sbjct: 284 VGINFLRKNGIKATLYLDDRLVVITPKSEAQRKRLIEGKEVCREAWITAATLVALGGFVN 343
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLP----------LEKQSTIQRYLLT-LTQIQWW 261
+E+S P Q ++LG + + ++ +P L+K + QR L L +I+
Sbjct: 344 IEKSEFIPKQRMEFLGFILDSQTETVEIPQGRWNALKAKLQKAISSQRTSLKELERIRGT 403
Query: 262 SVALHRSSPIFP------------------QAPQVFVSTDASNSGW-------------- 289
++ + +FP Q +T A + W
Sbjct: 404 QASM---AEVFPNMRMLIRQITMLICQAENQGAYEVRATRAVKAEWETWLKFEEAGLKRS 460
Query: 290 ---------GAIV----DNHSLGGV---WSDHQEM-W-------HINLKEMFAVRSALER 325
G I+ NH+ V WS ++ W HI +KE AV+ ALE
Sbjct: 461 WKQQSRQDAGIIIYTDASNHAGAIVVEEWSVSEKFAWDEEYADDHICIKEAVAVKYALEW 520
Query: 326 KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGK 385
L++K V DN +VV G++ K+ R + +++ A+R N+ L ++ K
Sbjct: 521 YAKRLENKRVTFLVDNSSVVD--GAVSGSRDAKMNRILVRIWETALRFNMDLKLEWVSTK 578
Query: 386 FNTWADSLSR 395
AD SR
Sbjct: 579 LQK-ADEPSR 587
>gi|301632006|ref|XP_002945082.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Xenopus (Silurana) tropicalis]
Length = 888
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 158/379 (41%), Gaps = 79/379 (20%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ F K+DL AY + IR + + RD
Sbjct: 161 YRGLNKITVKNRYPLPLISELFDQVRNAKFFTKLDLRGAYNLIRIRVGDEWKTAFNTRDG 220
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF + N+I L LG+ V+VYLDD+L+ + + R+ R
Sbjct: 221 HYEYLVMPFGLCNAPAVFQEFVNYIFRDL--LGLFVVVYLDDILIFSSNQSDHRNHVREV 278
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSL--------PLEKQSTIQ 249
+ L+ LE+ + + V + Q+LG + + +DS + PL ++ +Q
Sbjct: 279 LLRLRRNNLYAKLEKCI-FEVPSVQFLGFVISDEGLAMDSVKVKAILEWAQPLSLRA-LQ 336
Query: 250 RYL-----------------LTLTQIQ--------WWSVALHR---------SSPIF--P 273
R+L LT + W S A+H S+PI P
Sbjct: 337 RFLGFANYYRQFIKNFSLIVAPLTDLTKKGADPSLWSSKAVHAFEFLKNEFVSAPILRHP 396
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRS 321
F V DAS G GA++ +S + + I +E+ AV+
Sbjct: 397 DTSLPFIVEVDASEVGAGAVLSQRHPTTNKMHPCAFFSKKFSPAEVNYDIGNRELLAVKW 456
Query: 322 ALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMA 379
A E R L V++ +D++ ++ YI K F + ALF R N +L
Sbjct: 457 AFEEWRHLLEGAKYPVMVFTDHKNLL-YIE---SAKRFNPRQARWALF--FSRFNFSLTF 510
Query: 380 RYIPGKFNTWADSLSRQKE 398
R PG N AD+LSR E
Sbjct: 511 R--PGSKNIKADALSRSFE 527
>gi|301603744|ref|XP_002931543.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Xenopus (Silurana) tropicalis]
Length = 749
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 154/381 (40%), Gaps = 89/381 (23%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D L+ K+DL AY + IR + + RD
Sbjct: 93 YRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIRGGDEWKTAFNTRDG 152
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF + N I L LG V+VYLDD+L+ +QD RSQ + A
Sbjct: 153 HYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGKSVVVYLDDILIFSQDLETHRSQVKEA 210
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLE--KQSTIQRYLL--TLT 256
++ L+ LE+ + V +LG + + S+ ++ K S IQ++ L +
Sbjct: 211 LSRLRENSLFAKLEKCT-FEVPKISFLGYI----ISSRGFEMDPAKVSAIQKWPLPQSTK 265
Query: 257 QIQ-----------------------------------WWSVALHR---------SSPIF 272
IQ W VAL S+ +
Sbjct: 266 AIQRFIGFANYYRQFIKGFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVL 325
Query: 273 ----PQAPQVFVSTDASNSGWGAIVDN-HSLGG----------VWSDHQEMWHINLKEMF 317
P P F+ DAS+ G GAI+ HS G +S ++ + I +E+
Sbjct: 326 RHPEPHLP-FFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELL 384
Query: 318 AVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHN 374
AV+ ALE R L V I +D++ + +S K +A + L R N
Sbjct: 385 AVKLALEEWRHLLEGASHPVTIYTDHKNLEF-------LQSLKRQNPRQARWSLFFSRFN 437
Query: 375 ITLMARYIPGKFNTWADSLSR 395
L Y PG N AD+LSR
Sbjct: 438 FVLT--YRPGTKNRKADALSR 456
>gi|308500876|ref|XP_003112623.1| hypothetical protein CRE_30767 [Caenorhabditis remanei]
gi|308267191|gb|EFP11144.1| hypothetical protein CRE_30767 [Caenorhabditis remanei]
Length = 1077
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 155/403 (38%), Gaps = 90/403 (22%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCLPFGLASAPQVFA 159
FL + D Y HV I + L+ D LPFGL++AP +F
Sbjct: 554 FLSEACYAATFDFRSGYHHVKISEASSDLLAFSLSDPPSSPFLKFNALPFGLSTAPWLFT 613
Query: 160 KLTNWIANYLRNLGMRVIVYLDDLLL-------GNQDSVLLRSQARAAVATL-------- 204
K+ + R G+ + +YLDD L+ + +++R +AA +
Sbjct: 614 KIFRPLVGRWRAAGINIFLYLDDGLILAKTREEAERAVIMVREDLKAAGVCVAEDKSNWE 673
Query: 205 --------------------------QSLRWSVNLER-----SVLWPVQTCQYLGIM--- 230
SLR ++L + SVL + C YL +
Sbjct: 674 PSAQFTWLGIRGDLTERTVRLTEKRENSLRDQISLLKRSRAPSVLDRQKMCGYLSSLTIV 733
Query: 231 -----------WNPTLDSKSLPLEKQSTIQRYLLT--LTQIQWWSVALHRSSPIFPQA-- 275
+ +++ L + +I+R L ++++ +W L I
Sbjct: 734 AGHEAIGRQRQMASVIAEETVGLGRAGSIRRQLSEGEISELDFWEEKLESGGMIRDMEEE 793
Query: 276 --PQVFVSTDASNSGWGAIVDNHS---------LGGVWSDHQEMWHINLKEMFAVRSALE 324
PQ F+ TDAS G GA++ N S LGG ++ L+E+ AV+ A+E
Sbjct: 794 FEPQWFLFTDASAEGLGAVLKNGSGQTVMKMSELGGTGFQNESS---ALRELRAVQMAVE 850
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREV--EALFDLAVRHNITLMARYI 382
R + + VLI +D+Q V + K ++ +++ E E+L + I +I
Sbjct: 851 R-MASWKRGAVLIHTDSQAAVIILRKGSMRRTLQIVAERVWESLRSIGQAKFI-----WI 904
Query: 383 PGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFA 425
P + N AD SR + DW + + +WG + D FA
Sbjct: 905 PREQNKEADEASRDFDYDDWAVQNWAFEWAQKRWGEVKCDWFA 947
>gi|307183886|gb|EFN70496.1| hypothetical protein EAG_00458 [Camponotus floridanus]
Length = 240
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Query: 260 WWSV-ALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFA 318
WW L +P+ + + +DAS +GWG ++ G W HINL E+ A
Sbjct: 13 WWKKNILFARAPMIEPVYNLEIFSDASRTGWGVFCESQRSHGYWKAEDLELHINLLELMA 72
Query: 319 VRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLM 378
L+ + +L++ DN T ++YI++ ++ L ++ + I +
Sbjct: 73 AFFGLKCFASNKRHCNILLRLDNTTAIAYINRMRDSRYEGLSTLAREIWQWCEQREIWIT 132
Query: 379 ARYIPGKFNTWADSLSRQ-KELPDWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
A YIP K N AD SR+ + ++ L Q I +G PEIDLFA+ +A
Sbjct: 133 ASYIPSKENAEADYESRKLQPETEFELDNSAFQKIVKVFGQPEIDLFASRANA 185
>gi|301632157|ref|XP_002945157.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Xenopus (Silurana) tropicalis]
Length = 873
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 119/445 (26%), Positives = 183/445 (41%), Gaps = 100/445 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ + K+DL AY + I+
Sbjct: 219 GKKDGGLRPCIDYRGLNKITIKNRYPLPLISELFDRVKGANIYTKLDLRGAYNLIRIKEG 278
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 279 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 336
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL-------- 240
+ RS + + L+ LE+ + V + Q+LG + SK L
Sbjct: 337 NLRDHRSHVKVVLQRLRENNLYAKLEKCT-FEVNSVQFLGFH----ISSKGLEMDPEKVR 391
Query: 241 -------PLEKQST-------------IQRYLLTLTQIQ-----------WWSVALHR-- 267
PL ++T I+ + L + I W S A+
Sbjct: 392 AVLDWMQPLSLRATQRFLGFANYYRQFIKNFSLIVAPITDLTKKGADPSLWSSEAVQAFK 451
Query: 268 -------SSPIF--PQAPQVF-VSTDASNSGWGAIVDN-HSL----------GGVWSDHQ 306
S+PI P F V DAS G GAI+ H L +S +
Sbjct: 452 FLKKEFVSAPILRHPDTALPFIVEVDASEVGAGAILSQRHPLTNKLHPCAFFSKKFSPSE 511
Query: 307 EMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ I +E+ A++ A E R L V + +D++ ++ YI +S K L +
Sbjct: 512 ANYDIGNRELLAIKWAFEEWRHLLEGAKHAVSVFTDHKNLL-YI------ESAKRLNPRQ 564
Query: 365 ALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL--PD-WHLLPEVT-QHIFAQWGVP 419
A + L R N ++ Y PG NT AD+LSR E PD +P + + I A GV
Sbjct: 565 ARWALFFSRFNFSIT--YRPGSKNTKADALSRSFEANPPDPRECIPIIPGELIVAALGVD 622
Query: 420 EIDLFATANSAAFLVQGGPLKFPDG 444
I+L +T S+A P+ P G
Sbjct: 623 LINLLSTVQSSA------PVGTPSG 641
>gi|313219624|emb|CBY30545.1| unnamed protein product [Oikopleura dioica]
Length = 631
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
LQ+GD + K D + Y +P+ ++ + + ++ L FG+ +AP ++ L +
Sbjct: 116 MLQKGDVMAKFDDKKGYHQMPLAAESKKMACFKWGNYIFENNILAFGIPAAPGMYQLLNS 175
Query: 164 WIANYLRNLGMRVIVYLDDLLL------GNQDSVLLRSQARA-----AVATLQSLRWSVN 212
N+LR G+++ +YLDD LL N LL + ATL +L VN
Sbjct: 176 VGINFLRQNGIKITLYLDDRLLIISPKSENHRKKLLTEEILCKEVWLVAATLVALGGFVN 235
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL 252
+++S P Q ++LG + + ++ +P + +T+++ +
Sbjct: 236 IKKSEFKPTQRIEFLGFILDTNKETVEIPEGRWNTLKKRM 275
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 6/152 (3%)
Query: 278 VFVSTDASNSGWGAIVDNHSLGG--VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV 335
+ + TDAS +++ L W + HI +KE A+R ALE L K V
Sbjct: 363 LLIYTDASKHAGAIVIEKWKLSEKFAWEEDLAAAHIGIKEAAAIRMALEWYGRNLAKKRV 422
Query: 336 LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
DN +VV G+K ++ +++ ++ LA + I L ++ K AD SR
Sbjct: 423 TFLCDNDSVVQ--GAINGSKDPEMNKQLVRIWMLAQKRKIDLKIEWVSTKLQK-ADDPSR 479
Query: 396 QKELPDWHLLPEVTQHIFAQWGVP-EIDLFAT 426
+ + L E ++ + P EID+ AT
Sbjct: 480 IIDTREQKLTVEGFAYLQSHLQKPFEIDVAAT 511
>gi|313232917|emb|CBY09600.1| unnamed protein product [Oikopleura dioica]
Length = 724
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
LQ+GD + K D + Y +P+ ++ + + ++ L FG+ +AP ++ L +
Sbjct: 209 MLQKGDVMAKFDDKKGYHQMPLAAESKKMACFKWGNYIFENNILAFGIPAAPGMYQLLNS 268
Query: 164 WIANYLRNLGMRVIVYLDDLLL------GNQDSVLLRSQARA-----AVATLQSLRWSVN 212
N+LR G+++ +YLDD LL N LL + ATL +L VN
Sbjct: 269 VGINFLRQNGIKITLYLDDRLLIISPKSENHRKKLLTEEILCKEVWLVAATLVALGGFVN 328
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL 252
+++S P Q ++LG + + ++ +P + +T+++ +
Sbjct: 329 IKKSEFKPTQRIEFLGFILDTNKETVEIPEGRWNTLKKRM 368
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 6/152 (3%)
Query: 278 VFVSTDASNSGWGAIVDNHSLGG--VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV 335
+ + TDAS +++ L W + HI +KE A+R ALE L K V
Sbjct: 456 LLIYTDASKHAGAIVIEKWKLSEKFAWEEDLAAAHIGIKEAAAIRMALEWYGRNLAKKRV 515
Query: 336 LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
DN +VV G+K ++ +++ ++ LA + I L ++ K AD SR
Sbjct: 516 TFLCDNDSVVQGAI--NGSKDPEMNKQLVRIWMLAQKRKIDLKIEWVSTKLQK-ADDPSR 572
Query: 396 QKELPDWHLLPEVTQHIFAQWGVP-EIDLFAT 426
+ + L E ++ + P EID+ AT
Sbjct: 573 IIDTREQKLTVEGFAYLQSHLQKPFEIDVAAT 604
>gi|301614205|ref|XP_002936571.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1232
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 118/445 (26%), Positives = 181/445 (40%), Gaps = 100/445 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ + K+DL AY + IR
Sbjct: 267 GKKDGGLRPCIDYRGLNKITIKNRYPLPLISELFDRVKGANIYTKLDLRGAYNLIRIREG 326
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 327 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 384
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL-------- 240
+ RS + + L+ LE+ + V + Q+LG + SK L
Sbjct: 385 NLSDHRSHVKEVLRRLRENNLYAKLEKCT-FEVNSVQFLGFH----ISSKGLEMDPEKVR 439
Query: 241 -------PLEKQST-------------IQRYLLTLTQIQ-----------WWSVALHR-- 267
PL ++T I+ + L + I W S A+
Sbjct: 440 AVLDWTQPLSLRATQRFLGFANYYRQFIKNFSLIVAPITDLTKKGADPSLWSSEAVQAFN 499
Query: 268 -------SSPIF--PQAPQVF-VSTDASNSGWGAIVDN-HSL----------GGVWSDHQ 306
S+PI P F V DAS G GA++ H L +S +
Sbjct: 500 FLKKEFVSAPILRHPDTALPFIVEVDASEVGAGAVLSQRHPLTNKLHPCAFFSKKFSPSE 559
Query: 307 EMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ I +E+ A++ A E R L V + +D++ ++ YI +S K L +
Sbjct: 560 ANYDIGNRELLAIKWAFEEWRHLLEGAKHAVSVFTDHKNLL-YI------ESAKRLNPRQ 612
Query: 365 ALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL--PD-WHLLPEVTQH-IFAQWGVP 419
A + L R N ++ Y PG NT AD+LSR E PD +P + I A GV
Sbjct: 613 ARWALFFSRFNFSIT--YRPGSKNTKADALSRSFEANPPDPKECIPIIPGELIVAALGVD 670
Query: 420 EIDLFATANSAAFLVQGGPLKFPDG 444
+L +T S+A P+ P G
Sbjct: 671 LTNLLSTVQSSA------PVGTPSG 689
>gi|384484648|gb|EIE76828.1| hypothetical protein RO3G_01532 [Rhizopus delemar RA 99-880]
Length = 234
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ +++ D++ KIDL AY VPI S + FL+ +++ +Y L F L AP++F+K+
Sbjct: 9 EMIEKDDYICKIDLKDAYVVVPIHESSKDFLTFLHQGIIYIYRSLAFRLNIAPRIFSKIM 68
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT-LQSLRWSVNLERSV 217
+ LR +G+R + YL D+ + +RS + A +A+ +Q + +++ S+
Sbjct: 69 KYALEPLRKIGLRFVFYLYDICVDQ-----IRSISPATIASWIQQVMQDADIDTSI 119
>gi|313244785|emb|CBY15491.1| unnamed protein product [Oikopleura dioica]
Length = 724
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L+RGD L K D + Y +P+ ++ + ++ L FGL +AP + L +
Sbjct: 209 LLKRGDLLAKFDDKKGYHQMPLAAESKKMACFKWGGHVFENNILAFGLPAAPGQYQLLNS 268
Query: 164 WIANYLRNLGMRVIVYLDDLLL------GNQDSVLLRSQARA-----AVATLQSLRWSVN 212
N+LR G+++ +YLDD LL Q LL+ + ATL ++ VN
Sbjct: 269 VGINFLRRNGIKITLYLDDRLLVVTPESEEQRQKLLKEEVICKEVWVVAATLVAMGGFVN 328
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLP 241
+E+S P Q ++LG + + ++ +P
Sbjct: 329 IEKSEFKPTQRIEFLGFILDTEKETVEIP 357
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 278 VFVSTDASNSGWGAIVDNHSLGG--VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV 335
+ + TDAS ++++ L W + HI +KE A+R ALE L K V
Sbjct: 456 LLIYTDASKHAGAIVIESWKLSEKFAWEEDLANAHIGIKEAAAIRMALEWYGKNLAKKRV 515
Query: 336 LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
DN +VV G+K ++ +++ ++ LA + +I + ++ K AD SR
Sbjct: 516 TFLCDNDSVVQ--GAVNGSKDPEMNKQLVKIWSLAQKRSIDMKVEWVSTKLQK-ADDPSR 572
>gi|348531493|ref|XP_003453243.1| PREDICTED: receptor tyrosine-protein kinase erbB-4-like
[Oreochromis niloticus]
Length = 1523
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
GD+ IDL+ AYFHV I P H++FL + Y LPF L+ AP+ F K
Sbjct: 12 GDWFATIDLTDAYFHVAIHPKHRQFLRFAFEGVAYEYLVLPFELSLAPRTFTKCAEAALA 71
Query: 168 YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
LR G+R++ YLD S+L R+ AV
Sbjct: 72 PLRERGIRILAYLDLPRRLGSHSLLQRAGGDTAV 105
>gi|301605918|ref|XP_002932608.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1173
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 158/380 (41%), Gaps = 81/380 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ F K+DL AY + IR + + RD
Sbjct: 362 YRGLNKITVKNRYPLPLISELFDQVRNAKFFTKLDLRGAYNLIRIREGDEWKTAFNTRDG 421
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ + + R+ R
Sbjct: 422 HYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGLFVVVYLDDILIFSSNLSDHRNHVREV 479
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSL--------PLEKQSTIQ 249
+ L+ LE+ + + V + Q+LG + + +DS + PL ++ +Q
Sbjct: 480 LLRLRGNNLYAKLEKCI-FEVPSVQFLGFVISDEGLAMDSVKVKAILEWAQPLSLRA-LQ 537
Query: 250 RY-----------------LLTLTQIQ--------WWSVALHR---------SSPIF--P 273
R+ L LT + W S A+H S+PI P
Sbjct: 538 RFLGFANYYRQFIKNFSLILAPLTDLTKKGADPSLWSSKAVHAFEFLKKEFVSAPILRHP 597
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRS 321
F V DAS G GA++ +S + + I +E+ AV+
Sbjct: 598 DTSLPFIVEVDASEVGAGAVLSQRHPTTNKMHPCAFFSKKFSPAEVNYDIGNRELLAVKW 657
Query: 322 ALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
A E R L V++ +D++ +++ +S K L +A + L R N +L
Sbjct: 658 AFEEWRHLLEGAKYPVMVFTDHKNLLN-------IESAKRLNPRQARWALFFSRFNFSLT 710
Query: 379 ARYIPGKFNTWADSLSRQKE 398
R PG N AD+LSR E
Sbjct: 711 FR--PGSKNIKADALSRSFE 728
>gi|301622867|ref|XP_002940748.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1646
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 184/445 (41%), Gaps = 100/445 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ + K+DL AY + IR
Sbjct: 325 GKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDRVKGANIYTKLDLRGAYNLIRIREG 384
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP +F + N I L LG+ V+VYLDD+L+ +
Sbjct: 385 DEWKTAFNTRDGHYEYLVMPFGLCNAPAMFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 442
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL-------- 240
+ RS + + L+ LE+ + V++ Q+LG + SK L
Sbjct: 443 NLGDHRSHVKEVLRRLRENNLYAKLEKCT-FEVKSVQFLGFH----ISSKGLEMDPEKVR 497
Query: 241 -------PLEKQST-------------IQRYLLTLTQIQ-----------WWSVALHR-- 267
PL ++T I+ + L + I W S A+
Sbjct: 498 AVLDWTQPLSLRATQRFLGFANYYRQFIKNFSLIVAPITDLTKKGADPSLWPSEAVQAFN 557
Query: 268 -------SSPIF--PQAPQVF-VSTDASNSGWGAIVDN-HSL----------GGVWSDHQ 306
S+PI P + F V DAS G GA++ H L +S +
Sbjct: 558 FLKKEFVSAPILRHPDSALPFIVEVDASEVGAGAVLSQRHPLTNKLHPCAFFSKKFSPSE 617
Query: 307 EMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ I +E+ A++ A E R L V + +D++ ++ YI +S K L +
Sbjct: 618 VNYDIGNRELLAIKWAFEEWRHLLEGAKHAVSVFTDHKNLL-YI------ESAKRLNPRQ 670
Query: 365 ALFDL-AVRHNITLMARYIPGKFNTWADSLSRQKEL--PD-WHLLPEV-TQHIFAQWGVP 419
A + L R N ++ Y PG NT AD+LSR E PD +P + + I A GV
Sbjct: 671 ARWALFFTRFNFSIT--YRPGSKNTKADALSRSFESNPPDSRECIPIIPGELIVAALGVD 728
Query: 420 EIDLFATANSAAFLVQGGPLKFPDG 444
+L +T S+A P+ P G
Sbjct: 729 LTNLLSTVQSSA------PVGTPSG 747
>gi|301610510|ref|XP_002934795.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1004
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 181/445 (40%), Gaps = 100/445 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ K+DL AY + IR
Sbjct: 209 GKKDGGLRPCIDYRGLNKITIKNRYPLPLISELFDRVKGASIYTKLDLRGAYNLIRIREG 268
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 269 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 326
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL-------- 240
+ RS + + L+ LE+ + V + Q+LG + SK L
Sbjct: 327 NLSDHRSHVKEVLRRLRENNLYAKLEKCT-FEVNSVQFLGFH----ISSKGLEMDPEKVR 381
Query: 241 -------PLEKQST-------------IQRYLLTLTQIQ-----------WWSVALHR-- 267
PL ++T I+ + L + I W S A+
Sbjct: 382 AVLDWTQPLSLRATQRFLGFANYYRQFIKNFSLIVAPITDLTKKGADPSLWSSEAVQAFN 441
Query: 268 -------SSPIF--PQAPQVF-VSTDASNSGWGAIVDN-HSLGG----------VWSDHQ 306
S+PI P F V DAS G GA++ H L +S +
Sbjct: 442 LLKKEFVSAPILRHPDTALPFIVEVDASEVGAGAVLSQRHPLTNKLHPCAFFSRKFSPSE 501
Query: 307 EMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ I +E+ A++ A E R L V + +D++ ++ YI +S + L +
Sbjct: 502 ANYDIGNRELLAIKWAFEEWRHLLEGAKHAVSVFTDHKNLL-YI------ESARRLNPRQ 554
Query: 365 ALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL--PD-WHLLPEVT-QHIFAQWGVP 419
A + L R N ++ Y PG NT AD+LSR E PD +P + + I A GV
Sbjct: 555 ARWALFFSRFNFSIT--YRPGSKNTKADALSRSFEANPPDPRECIPIIPGKLIVAALGVD 612
Query: 420 EIDLFATANSAAFLVQGGPLKFPDG 444
+L +T S+A P+ P G
Sbjct: 613 LTNLLSTVQSSA------PIGTPSG 631
>gi|156335399|ref|XP_001619572.1| hypothetical protein NEMVEDRAFT_v1g224056 [Nematostella vectensis]
gi|156203052|gb|EDO27472.1| predicted protein [Nematostella vectensis]
Length = 213
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 33/138 (23%)
Query: 103 DFLQRGDFLVKIDLSQAYFHV------PIRPSHQRFLSVVYRDTLYCMTCLP--FGLASA 154
D L+RGD L KIDL+ A + P P+ Q V + TL + P FGLASA
Sbjct: 9 DLLRRGDLLNKIDLNNACLTISNFETEPKVPALQ-----VEKPTLAVSSPPPPLFGLASA 63
Query: 155 PQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLE 214
P+VF K+ + +LR G+R+I+YLDD+L+ + L
Sbjct: 64 PRVFTKILKPVVAHLRKRGIRLIIYLDDILIMSASKELAL-------------------- 103
Query: 215 RSVLWPVQTCQYLGIMWN 232
+S+L P + ++LG + N
Sbjct: 104 KSILCPTRELKFLGKVGN 121
>gi|301614289|ref|XP_002936633.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1108
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 182/445 (40%), Gaps = 100/445 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ + K+DL AY + I+
Sbjct: 248 GKKDGGLRPCIDYRGLNKITIKNRYPLPLISELFDRVKGANIYTKLDLRGAYNLIRIKEG 307
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 308 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 365
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL-------- 240
+ RS + + L+ LE+ + V + Q+LG + SK L
Sbjct: 366 NLRDHRSHVKVVLQRLRENNLYAKLEKCT-FEVNSVQFLGFH----ISSKGLEMDPEKVR 420
Query: 241 -------PLEKQST-------------IQRYLLTLTQIQ-----------WWSVALHR-- 267
PL ++T I+ + L + I W S A+
Sbjct: 421 AVLDWMQPLSLRATQRFLGFANYYRQFIKNFSLIVAPITDLTKKGADPSLWSSEAVQAFN 480
Query: 268 -------SSPIF--PQAPQVF-VSTDASNSGWGAIVDN-HSL----------GGVWSDHQ 306
S+PI P F V DAS G GA++ H L +S +
Sbjct: 481 FLKKEFVSAPILRHPDTALPFIVEVDASEVGAGAVLSQRHPLTNKLHPCAFFSKKFSPSE 540
Query: 307 EMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ I +E+ A++ A E R L V + +D++ ++ YI +S K L +
Sbjct: 541 ANYDIGNRELLAIKWAFEEWRHLLEGAKHAVSVFTDHKNLL-YI------ESAKRLNPRQ 593
Query: 365 ALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL--PD-WHLLPEV-TQHIFAQWGVP 419
A + L R N ++ Y G NT AD+LSR E PD +P + + I A GV
Sbjct: 594 ARWALFFSRFNFSIT--YRAGSKNTKADALSRSFEANPPDPRECIPIIPGELIVAALGVD 651
Query: 420 EIDLFATANSAAFLVQGGPLKFPDG 444
I+L +T S+A P+ P G
Sbjct: 652 LINLLSTVQSSA------PVGTPSG 670
>gi|340381288|ref|XP_003389153.1| PREDICTED: hypothetical protein LOC100634784 [Amphimedon
queenslandica]
Length = 1057
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG ++ K+DL AY VP+ P Q L + + D ++C LPFGL SAP+VF + N +A
Sbjct: 427 RGAWMAKLDLRSAYRRVPVHPDDQPLLGMAWDDRIFCDRALPFGLRSAPKVFTAVANALA 486
Query: 167 NYLRNLGMR-VIVYLDDLLL-GNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
++ G+ +I YLDD S + AV L + V + V+ P +
Sbjct: 487 WAMQCEGIGDLIHYLDDFFFWSPATSRDCHTALEIAVPLCNKLGFPVAPHK-VVGPATSL 545
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYL 252
+LG + LP +K S +++ L
Sbjct: 546 IFLGTEIDSLRQEIRLPEDKLSFLKQAL 573
>gi|339232968|ref|XP_003381601.1| putative integrase core domain protein [Trichinella spiralis]
gi|316979569|gb|EFV62345.1| putative integrase core domain protein [Trichinella spiralis]
Length = 941
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ G K+DLS+AY V + +R L + LY LPFG+ASAP +F K+ +
Sbjct: 217 LRGGKTFSKLDLSEAYLQVELDEESKRILVINTHKGLYHYNRLPFGVASAPAIFQKVMDT 276
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + N V YLDD++L R + + L+ ++ E+ + + +
Sbjct: 277 MLAGIPN----VAAYLDDIILTGATDDEHRRTLKLVLGRLKEFGLRIHKEKCIFFQ-REV 331
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDA 284
+YLG + + + + LE + ++ + L P +P + ++ D
Sbjct: 332 EYLGHILSSKVTQERRALELDRRAHKSGGKRKRLLNSPLLLTHYHPEWP----IVLAADT 387
Query: 285 SNSGWGAIV 293
SN G GA+V
Sbjct: 388 SNEGIGAVV 396
>gi|313244116|emb|CBY14967.1| unnamed protein product [Oikopleura dioica]
Length = 725
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 84/370 (22%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++GD +VK D + + +P+ ++ + + L FGL +AP ++ +
Sbjct: 210 LLKKGDLMVKFDDKRGFHQMPLAEESKKMACFEWGGKKFVNNILCFGLPAAPGIYQSMNL 269
Query: 164 WIANYLRNLGMRVIVYLDDLLL---GNQDSVLLR--------SQARAAVATLQSLRWSVN 212
N+LR G++ +YLDD L+ ++ LR +A ATL +L VN
Sbjct: 270 VGINFLRKNGIKATLYLDDRLVVITPKSEAHRLRLLEGKEVCKEAWVTAATLVALGGFVN 329
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEK--------QSTIQRYLLTLTQIQWWSVA 264
+E+S P Q ++LG + + ++ +P + Q + +L +++
Sbjct: 330 IEKSEFIPKQRMEFLGFILDSETETIEIPQSRWLALKTKLQQALNSERTSLKELERIRGT 389
Query: 265 LHRSSPIFP------------------QAPQVFVSTDASNSGWGAIV--DNHSLGGVW-- 302
+ +FP Q T A + W + +N L W
Sbjct: 390 QASMAEVFPNMRMLIRQITMLICQAEIQGAYEVRLTRAVKAEWKTWLNFENSGLKRCWKQ 449
Query: 303 --------------SDHQ-----EMWHIN---------------LKEMFAVRSALERKLP 328
S+H E W+I+ +KE AV+ ALE
Sbjct: 450 QDRQNAGIIIYTDASNHAGAIVVEEWNISEKFAWDEEYASDHICIKEAVAVKYALEWYAK 509
Query: 329 VLQDKVVLIQSDNQTVVSYIHKEG---GTKSFKLLREVEALFDLAVRHNITLMARYIPGK 385
L++K V DN +VV EG G+K ++ + + +++ A++ N+ L ++ K
Sbjct: 510 RLENKKVTFLVDNSSVV-----EGAVSGSKDLRMNKILVRIWETALKFNMDLKLEWVSTK 564
Query: 386 FNTWADSLSR 395
AD SR
Sbjct: 565 LQR-ADEPSR 573
>gi|313228592|emb|CBY07384.1| unnamed protein product [Oikopleura dioica]
Length = 674
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 144/370 (38%), Gaps = 84/370 (22%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++GD +VK D + + +P+ ++ + + L FGL +AP ++ +
Sbjct: 148 LLKKGDLMVKFDDKRGFHQMPLAEESKKMACFEWGGKKFVNNILCFGLPAAPGIYQSMNL 207
Query: 164 WIANYLRNLGMRVIVYLDDLLL---GNQDSVLLR--------SQARAAVATLQSLRWSVN 212
N+LR G++ +YLDD L+ ++ LR +A ATL +L VN
Sbjct: 208 VGINFLRKNGIKATLYLDDRLVVITPKSEAHRLRLLEGKEVCKEAWVTAATLVALGGFVN 267
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEK--------QSTIQRYLLTLTQIQWWSVA 264
+E+S P Q ++LG + + ++ +P + Q + +L +++
Sbjct: 268 IEKSEFIPKQRMEFLGFILDSETETIEIPQSRWLALKAKLQQALNSERTSLKELERIRGT 327
Query: 265 LHRSSPIFP------------------QAPQVFVSTDASNSGWGAIV--DNHSLGGVW-- 302
+ +FP Q T A + W + +N L W
Sbjct: 328 QASMAEVFPNMRMLIRQITMLIGQAEIQGAYEVRLTRAVKAEWKTWLNFENSGLKRCWKQ 387
Query: 303 --------------SDHQ-----EMWHIN---------------LKEMFAVRSALERKLP 328
S+H E W+I+ +KE AV+ ALE
Sbjct: 388 QDRQNAGIIIYTDASNHAGAIVVEEWNISEKFAWDEEYASDHICIKEAVAVKYALEWYAK 447
Query: 329 VLQDKVVLIQSDNQTVVSYIHKEG---GTKSFKLLREVEALFDLAVRHNITLMARYIPGK 385
L++K V DN +VV EG G+K K+ R + +++ A++ N+ L ++
Sbjct: 448 RLENKKVTFLVDNSSVV-----EGAVSGSKDLKMNRILVRIWETALKFNMDLKLEWVSTT 502
Query: 386 FNTWADSLSR 395
AD SR
Sbjct: 503 LQK-ADEPSR 511
>gi|440800943|gb|ELR21969.1| hypothetical protein ACA1_325410 [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 30/202 (14%)
Query: 193 LRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL 252
L++Q+ +A L +L WSVN E+S L P Q ++LG++ + ++ + Q+ I
Sbjct: 9 LQAQS-TTLALLTNLGWSVNWEKSSLEPSQAKEFLGLIVDMMVELRFCIKLSQAAIHNLE 67
Query: 253 LTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
L + W + + P+ D+S + G W H HIN
Sbjct: 68 EWLAGLSKWDGRVVLTWPL-----------DSSTTSMG-----------WWKHCSQ-HIN 104
Query: 313 LKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVR 372
E+ AV AL+ LP L K++L+ +N T V YI K + +FDL
Sbjct: 105 KLELKAVHQALKALLPCLWGKLILLHCNNVTAVVYI------KHLVMNCMTHKIFDLCEH 158
Query: 373 HNITLMARYIPGKFNTWADSLS 394
HNI L+A ++PG N AD LS
Sbjct: 159 HNIQLLAIHLPGVENNRADHLS 180
>gi|391325818|ref|XP_003737424.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 1192
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 153/381 (40%), Gaps = 86/381 (22%)
Query: 101 VPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQV 157
+ D +QR G KIDL AY +P+ S + + V L+ T + FGLASAP
Sbjct: 510 IEDLMQRLAKGRVFSKIDLRSAYHQIPLHESSRDLTAFVSPWGLFRYTRVCFGLASAPAA 569
Query: 158 FAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
F ++ L++L VI YLDD+L+ + + + R + TL VN
Sbjct: 570 FQA---FMEETLKDLEG-VICYLDDVLVVGETRQVHDERVRGLLRTLSERGLKVN--NKC 623
Query: 218 LWPVQTCQYLGIMWN-----PTLDS----KSLPLEKQSTIQRYLLTLTQIQWWSV----- 263
++ V+ ++LG + + P D+ +++P K + R L + V
Sbjct: 624 VFGVEETEFLGHVVSSKGVKPLPDNVKAIENVPEPKNVSQLRSFLGMAGFYLKCVPRYAE 683
Query: 264 ------------------------------ALHRSSP--IFPQAPQVFVSTDASNSGWGA 291
A+ ++P +F A + ++TDAS+ G GA
Sbjct: 684 LVEPLKELLRKEVKFDWRERQRLAFRAVKGAIAEAAPLRVFDPALPLVLTTDASDYGLGA 743
Query: 292 IVDNHSLGGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQ 342
++ G + S+ Q + + KE A A+E+ L + +++D++
Sbjct: 744 VLQQRVNGKLEPLAYASCSLSETQRRYSTSDKEALACVWAIEKWHVYLWGRRFTLKTDHR 803
Query: 343 TVVSYIHKEGG-TKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPD 401
+VS +G +S +L R E L A Y PG N AD+LSR
Sbjct: 804 ALVSLFGTKGADRRSIRLARWAERLGAYA------FDVEYKPGVENVIADALSR------ 851
Query: 402 WHLLPEVTQHIFAQWGVPEID 422
LPE AQ G E+D
Sbjct: 852 ---LPE------AQEGAVEVD 863
>gi|391325812|ref|XP_003737421.1| PREDICTED: uncharacterized protein K02A2.6-like, partial
[Metaseiulus occidentalis]
Length = 1209
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 153/381 (40%), Gaps = 86/381 (22%)
Query: 101 VPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQV 157
+ D +QR G KIDL AY +P+ S + + V L+ T + FGLASAP
Sbjct: 472 IEDLMQRLAKGRVFSKIDLRSAYHQIPLHESSRDLTAFVSPWGLFRYTRVCFGLASAPAA 531
Query: 158 FAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
F ++ L++L VI YLDD+L+ + + + R + TL VN
Sbjct: 532 FQA---FMEETLKDLEG-VICYLDDVLVVGETRQVHDERVRGLLRTLSERGLKVN--NKC 585
Query: 218 LWPVQTCQYLGIMWN-----PTLDS----KSLPLEKQSTIQRYLLTLTQIQWWSV----- 263
++ V+ ++LG + + P D+ +++P K + R L + V
Sbjct: 586 VFGVEETEFLGHVVSSKGVKPLPDNVKAIENVPEPKNVSQLRSFLGMAGFYLKCVPRYAE 645
Query: 264 ------------------------------ALHRSSP--IFPQAPQVFVSTDASNSGWGA 291
A+ ++P +F A + ++TDAS+ G GA
Sbjct: 646 LVEPLRELLRKEVKFDWREKQRLAFRAVKGAIAEAAPLRVFDPALPLVLTTDASDYGLGA 705
Query: 292 IVDNHSLGGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQ 342
++ G + S+ Q + + KE A A+E+ L + +++D++
Sbjct: 706 VLQQRVNGKLEPLAYASCSLSETQRRYSTSDKEALACVWAIEKWHVYLWGRRFTLKTDHR 765
Query: 343 TVVSYIHKEGGT-KSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPD 401
+VS +G +S +L R E L A Y PG N AD+LSR
Sbjct: 766 ALVSLFGTKGADRRSIRLARWAERLGAYA------FDVEYKPGVENVIADALSR------ 813
Query: 402 WHLLPEVTQHIFAQWGVPEID 422
LPE AQ G E+D
Sbjct: 814 ---LPE------AQEGAVEVD 825
>gi|301605883|ref|XP_002932571.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1049
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/445 (26%), Positives = 180/445 (40%), Gaps = 100/445 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ K+D AY + IR
Sbjct: 169 GKKDGGLRPCIDYRGLNKITIKNRYPLPLISELFDRVKGASIYTKLDFRGAYNLILIREG 228
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 229 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 286
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL-------- 240
+ RS + + L+ LE+ + V + Q+LG + SK L
Sbjct: 287 NLSDHRSHVKEVLRRLRENNLYAKLEKCT-FEVNSVQFLGFH----ISSKGLEMDPEKVR 341
Query: 241 -------PLEKQST-------------IQRYLLTLTQIQ-----------WWSVALHR-- 267
PL ++T I+ + L + I W S A+
Sbjct: 342 AVLDWTQPLSLRATQRFLGFANYYRQFIKNFSLIVAPITDLTKKGADPSLWSSEAVQAFN 401
Query: 268 -------SSPIF--PQAPQVF-VSTDASNSGWGAIVDN-HSLGG----------VWSDHQ 306
S+PI P F V DAS G GA++ H L +S +
Sbjct: 402 LLKKEFVSAPILRHPDTALPFIVEVDASEVGAGAVLSQRHPLTNKLHPCAFFSRKFSPSE 461
Query: 307 EMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ I +E+ A++ A E R L V + +D++ ++ YI +S + L +
Sbjct: 462 ANYDIGNRELLAIKWAFEEWRHLLEGAKHAVSVFTDHKNLL-YI------ESARRLNPRQ 514
Query: 365 ALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL--PD-WHLLPEVT-QHIFAQWGVP 419
A + L R N ++ Y PG NT AD+LSR E PD +P + + I A GV
Sbjct: 515 ARWALFFSRFNFSIT--YRPGSKNTKADALSRSFEANPPDPRECIPIIPGELIVAALGVD 572
Query: 420 EIDLFATANSAAFLVQGGPLKFPDG 444
+L +T S+A P+ P G
Sbjct: 573 LTNLLSTVQSSA------PVGTPSG 591
>gi|10058|emb|CAA43185.1| ORF2 [Panagrellus redivivus]
Length = 588
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
+++ K L N + + F++ D+ Y + S +L+ + + M
Sbjct: 59 YITANKIKLENVAIAKSLIPKSGFMLTFDMKSGYHQARMADSELIYLAFRWEGKTFWMKA 118
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
LPFGL+SAP+ F KL LR G+ ++YLDDLL+ ++ + A
Sbjct: 119 LPFGLSSAPEYFTKLFRHPLATLRGDGVNCLLYLDDLLVWSETYEGACEASAKVRALFGK 178
Query: 207 LRWSVNLERSVLWPVQTCQYLGIMWNPT 234
L +N E+S + P + ++LG+++N T
Sbjct: 179 LGVVLNNEKSSVTPQREVKWLGVVFNLT 206
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 276 PQVFV-STDASNSGWGAIV----DNHSLGGVWSDHQEMWHINL---KEMFAVRSALERKL 327
P +V +TDAS +G GA+ D L + + E +L +E+ AV+ AL L
Sbjct: 308 PSEYVFATDASATGVGAVKLNPKDLTELSSAYREFDEYGGNDLEHHRELLAVQFALHHYL 367
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
++ VV +++DNQ + + K G + L V + + + + LM +IP N
Sbjct: 368 ASKKNTVVTVRTDNQNIPRILAKGSGVQELNEL--VLQVTEWCEQRKVELMTTWIPRAMN 425
Query: 388 TWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
+ AD SR+ + DW + E+ + + A++ + D FA+
Sbjct: 426 SAADRASRETDPDDWAISKEIFEKLTAKFQKCQCDRFAS 464
>gi|307201692|gb|EFN81403.1| hypothetical protein EAI_09447 [Harpegnathos saltator]
Length = 251
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Query: 265 LHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALE 324
+H+ + I + + +D S +GWGA G WS HIN E+ A AL+
Sbjct: 12 VHQFNVIHSSPYECEIFSDVSLTGWGASCGMQRTHGWWSIEDRALHINALELKAAFHALK 71
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPG 384
L D +L++ DN T +SYI++ G + L ++ + +I L A YI
Sbjct: 72 CFALHLHDCRILLRIDNTTAISYINRFGSVQYPLLSDLARDMWKWCEKRHILLFASYIAS 131
Query: 385 KFNTWADSLSRQKEL-PDWHLLPEVTQHIFAQWGVPEIDLFATANSA 430
N AD+ SR + +W L + + + +G +IDLFA+ +A
Sbjct: 132 IDNVIADAESRISDTNTEWSLSEQAFRAVEGVFGPFDIDLFASIINA 178
>gi|339257704|ref|XP_003369038.1| reverse transcriptase family protein [Trichinella spiralis]
gi|316966793|gb|EFV51331.1| reverse transcriptase family protein [Trichinella spiralis]
Length = 675
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ G K+DLS+AY V + ++ L + LY LPFG+ASAP +F ++ +
Sbjct: 309 LRGGKTFTKLDLSEAYLQVELDEESKKILVINTHKGLYYYNRLPFGVASAPAIFQQVMDT 368
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + N V YLDD++L R + + L+ + E+ + +
Sbjct: 369 MLAGIPN----VAAYLDDIILTGATDDEYRRTLKLVLGRLKEFGLRIRKEKCTFFQ-REV 423
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDA 284
+YLG + L SK + + + T + L ++A RS +P + ++ DA
Sbjct: 424 EYLGHI----LSSKGIRADPKKTAAFVNMPLPT----NIAKLRSFLEWP----IVLAADA 471
Query: 285 SNSGWGAIV 293
SN G GA+V
Sbjct: 472 SNEGIGAVV 480
>gi|301621282|ref|XP_002939985.1| PREDICTED: hypothetical protein LOC100487960 [Xenopus (Silurana)
tropicalis]
Length = 911
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 144/386 (37%), Gaps = 80/386 (20%)
Query: 84 DRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
DR + + R+ RG + K+D+ A+ +P+ P L Y+ Y
Sbjct: 504 DRELVRVCYTSFDEAIRLVKEAGRGALMAKVDVESAFRLLPVHPESLHLLGCHYKGGYYV 563
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLG--MRVIVYLDDLLLGNQDSVLLRS---QAR 198
CLP G + + F + +I +R VI YLDD L +L + Q
Sbjct: 564 DRCLPMGCSISCAYFEAFSTFIEWVVRKRAGVSAVIHYLDDFLCVGPGHTMLCAVLLQTV 623
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTC-QYLGIMWNPTLDSKSLPLEKQSTIQRYL----- 252
AVA L + V L TC ++LGI + LPL+K ++ +
Sbjct: 624 QAVADL----FGVPLAPDKTEGPSTCLRFLGIEIDTIKQECRLPLDKIQQLREEVGYAQT 679
Query: 253 ---LTLTQIQWWSVALHRSSPIFPQA----------------PQVFVS------------ 281
+TL Q+Q L+ + I P PQ F+
Sbjct: 680 AKKVTLRQLQSLLGKLNFACRIIPMGRVFSRNLALATAGIRQPQHFIRLNKGHKEDLGVW 739
Query: 282 --------------------------TDASNS-GWGAIVDNHSLGGVWS----DHQEMWH 310
TDA+ S G+GA G W + + +
Sbjct: 740 QTFLQGFNGKLYWQSQPRANEEFHFFTDAAGSGGFGAYFQGKWCSGPWPSEWIEDKLTSN 799
Query: 311 INLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK-EGGTKSFKLLREVEALFDL 369
+ L E+F + A+E L ++ V+ +DN +VV I+ G++ L ++ L
Sbjct: 800 LTLLELFPIIVAMELWGTQLANRAVVFYTDNMSVVMAINNLTSGSRPVLCL--LKHLVLR 857
Query: 370 AVRHNITLMARYIPGKFNTWADSLSR 395
++ N+ A+++PG N ADSLSR
Sbjct: 858 CLQLNVRFGAKHVPGYTNEIADSLSR 883
>gi|66828729|ref|XP_647718.1| hypothetical protein DDB_G0267314 [Dictyostelium discoideum AX4]
gi|60475863|gb|EAL73794.1| hypothetical protein DDB_G0267314 [Dictyostelium discoideum AX4]
Length = 316
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K ++ HV + P ++ +++ + Y + FGL++AP++F L + LR++
Sbjct: 200 KTRYQESLLHVLVDPQYRDLFRFLWKGSHYRWKTMSFGLSTAPRIFTMLLRPVLRMLRDI 259
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYL 227
+ VI YLDDLL+ S + + L L + +NLE+SVL P Q+ + L
Sbjct: 260 KVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEPTQSIKNL 314
>gi|301616980|ref|XP_002937928.1| PREDICTED: hypothetical protein LOC100497221 [Xenopus (Silurana)
tropicalis]
Length = 1037
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 146/388 (37%), Gaps = 84/388 (21%)
Query: 84 DRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
DR + + R+ RG + K+D+ A+ +P+ P L ++ Y
Sbjct: 630 DRELVRVCYTSFDEAIRLVKEAGRGALMAKVDVESAFRLLPVHPESIHLLGCHFKGGYYV 689
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLG--MRVIVYLDDLLLGNQDSVLLRSQARAAV 201
CLP G + + F + +I +R VI YLDD L +L
Sbjct: 690 DRCLPMGCSISCAYFEAFSTFIEWVVRKRAGVSAVIHYLDDFLCVGPGHTML------CA 743
Query: 202 ATLQSLRWSVNLERSVLWPVQT-----C-QYLGIMWNPTLDSKSLPLEKQSTIQRYL--- 252
LQ+++ +L L P +T C ++LGI + LPL+K ++ +
Sbjct: 744 VLLQTVQEVADLFGVPLAPDKTEGPSTCLRFLGIEIDTIRQECRLPLDKVQQLKEEVGYA 803
Query: 253 -----LTLTQIQWWSVALHRSSPIFPQA----------------PQVFVS---------- 281
+TL Q+Q L+ + I P PQ F+
Sbjct: 804 QTAKKVTLRQLQSLLGKLNFACRIIPMGRVFSRNLALATAGIRQPQHFIRLNKGHKEDLG 863
Query: 282 ----------------------------TDASNSG-WGAIVDNHSLGGVW----SDHQEM 308
TDA+ SG +GA W S+ +
Sbjct: 864 VWQTFLQGFNGKLYWQSQPRANEEFHFFTDAAGSGGFGAYFQGKWCAAPWPSQWSEDKLT 923
Query: 309 WHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK-EGGTKSFKLLREVEALF 367
++ L E+F + A+E P L ++ V+ +DN +VV I+ G++ L ++ L
Sbjct: 924 SNLTLLELFPIIVAMELWGPQLANQAVVFYTDNMSVVMAINNLTSGSRPVLCL--LKHLV 981
Query: 368 DLAVRHNITLMARYIPGKFNTWADSLSR 395
++ N+ A+++PG N ADSLSR
Sbjct: 982 LRCLQQNVRFGAKHLPGYTNEIADSLSR 1009
>gi|301620539|ref|XP_002939631.1| PREDICTED: hypothetical protein LOC100485640 [Xenopus (Silurana)
tropicalis]
Length = 1037
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 146/388 (37%), Gaps = 84/388 (21%)
Query: 84 DRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
DR + + R+ RG + K+D+ A+ +P+ P L ++ Y
Sbjct: 630 DRELVRVCYTSFDEAIRLVKEAGRGALMAKVDVESAFRLLPVHPESIHLLGCHFKGGYYV 689
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLG--MRVIVYLDDLLLGNQDSVLLRSQARAAV 201
CLP G + + F + +I +R VI YLDD L +L
Sbjct: 690 DRCLPMGCSISCAYFEAFSTFIEWVVRKRAGVSAVIHYLDDFLCVGPGHTML------CA 743
Query: 202 ATLQSLRWSVNLERSVLWPVQT-----C-QYLGIMWNPTLDSKSLPLEKQSTIQRYL--- 252
LQ+++ +L L P +T C ++LGI + LPL+K ++ +
Sbjct: 744 VLLQTVQEVADLFGVPLAPDKTEGPSTCLRFLGIEIDTIRQECRLPLDKVQQLKEEVGYA 803
Query: 253 -----LTLTQIQWWSVALHRSSPIFPQA----------------PQVFVS---------- 281
+TL Q+Q L+ + I P PQ F+
Sbjct: 804 QTAKKVTLRQLQSLLGKLNFACRIIPMGRVFSRNLALATAGIRQPQHFIRLNKGHKEDLG 863
Query: 282 ----------------------------TDASNSG-WGAIVDNHSLGGVW----SDHQEM 308
TDA+ SG +GA W S+ +
Sbjct: 864 VWQTFLQGFNGKLYWQSQPRANEEFHFFTDAAGSGGFGAYFQGKWCAAPWPSQWSEDKLT 923
Query: 309 WHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK-EGGTKSFKLLREVEALF 367
++ L E+F + A+E P L ++ V+ +DN +VV I+ G++ L ++ L
Sbjct: 924 SNLTLLELFPIIVAMELWGPQLANQAVVFYTDNMSVVMAINNLTSGSRPVLCL--LKHLV 981
Query: 368 DLAVRHNITLMARYIPGKFNTWADSLSR 395
++ N+ A+++PG N ADSLSR
Sbjct: 982 LRCLQQNVRFGAKHLPGYTNEIADSLSR 1009
>gi|211925532|dbj|BAG81989.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 569
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 77/385 (20%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 149 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 206
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 207 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 262
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG---------IMWNPTLDSKS 239
+ RA L + +N+++ L+ V + +LG + N L +S
Sbjct: 263 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLGHHIDSTGISPLPNRILALES 321
Query: 240 LPLEKQST-IQRY--------------------LLTLTQIQWWSVALHRSS-PIFPQAPQ 277
P+ T ++R+ L L + SV L + F +A Q
Sbjct: 322 FPIPTTLTQLRRFIGIINYYRRFIPHCADILQPLTDLLGCKEKSVTLPSVAIAAFERAKQ 381
Query: 278 ------------------VFVSTDASNSGWGA----IVDNHS-----LGGVWSDHQEMWH 310
+ ++TDASN+ GA +V+N S Q +
Sbjct: 382 AIAHATKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLAFFSQKMQAAQTRYS 441
Query: 311 INLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLA 370
+E+ A+ A+ +L+ + IQ+D++ + + + S + +R ++ +
Sbjct: 442 TFGRELLAIYLAIRHFRHLLEGRSFTIQTDHKPLTYAFNAKPDRYSPREIRHLDYI---- 497
Query: 371 VRHNITLMARYIPGKFNTWADSLSR 395
T RY PG N AD+LSR
Sbjct: 498 --SQFTTDIRYTPGSDNVVADALSR 520
>gi|211925530|dbj|BAG81988.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 530
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 77/385 (20%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 110 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 167
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 168 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 223
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG---------IMWNPTLDSKS 239
+ RA L + +N+++ L+ V + +LG + N L +S
Sbjct: 224 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLGHHIDSTGISPLPNRILALES 282
Query: 240 LPLEKQST-IQRY--------------------LLTLTQIQWWSVALHRSS-PIFPQAPQ 277
P+ T ++R+ L L + SV L + F +A Q
Sbjct: 283 FPIPTTLTQLRRFIGIINYYRRLIPHCADILQPLTDLLGCKEKSVTLPSVAIAAFERAKQ 342
Query: 278 ------------------VFVSTDASNSGWGA----IVDNHS-----LGGVWSDHQEMWH 310
+ ++TDASN+ GA +V+N S Q +
Sbjct: 343 AIAHATKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLAFFSQKMQAAQTRYS 402
Query: 311 INLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLA 370
+E+ A+ A+ +L+ + IQ+D++ + + + S + +R ++ +
Sbjct: 403 TFGRELLAIYLAIRHFRHLLEGRSFTIQTDHKPLTYAFNAKPDRYSPREIRHLDYI---- 458
Query: 371 VRHNITLMARYIPGKFNTWADSLSR 395
T RY PG N AD+LSR
Sbjct: 459 --SQFTTDIRYTPGSDNVVADALSR 481
>gi|301632403|ref|XP_002945275.1| PREDICTED: genome polyprotein-like [Xenopus (Silurana) tropicalis]
Length = 565
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 139/366 (37%), Gaps = 86/366 (23%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAP---QVFAKLTN 163
+G L K D+ A+ +PI P L ++ + CLP G + + ++FA
Sbjct: 178 QGSLLAKTDIESAFRLLPIHPDSHYLLGFHFQGAYFYDKCLPMGCSISCKYFEMFATFLE 237
Query: 164 WIANYLRNLGMRVIVYLDDLLL-----GNQDSVLLRSQARAAVATLQSLRWSVNLERS-V 217
W+ + V YLDD L N S+LL + L + ++ V + R
Sbjct: 238 WVIKFESGANF-VTHYLDDFLFLGPRESNTCSILLNT------FLLYAKKFGVPIAREKT 290
Query: 218 LWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL--------LTLTQIQWWSVALHRSS 269
+ P + Q+LGI + LP K + ++ + L L IQ L+ ++
Sbjct: 291 VAPTTSLQFLGIEIDTMRMEFRLPEAKITKLKSLIASALVAKKLKLKHIQSLIGHLNFAT 350
Query: 270 PIFPQAPQVF------VSTDASNSGW---------------------------------- 289
I P +VF ++ +N W
Sbjct: 351 RIIPMG-RVFNRRLIVLTMGITNPNWHIRIPTSVKEDLLIWRQFLSFYNGRTCWQEDFIE 409
Query: 290 -----------GAIVDNHSLGGVWS---------DHQEMWHINLKEMFAVRSALERKLPV 329
G+ L G W + + ++ L E+F V ALE
Sbjct: 410 NSAIQLFTDAAGSTGFGAYLSGCWCCAAWPTEWREQELTGNLVLLEIFPVLVALEIWGSW 469
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L ++ +L+ DN VV I+ KS +++ + L LA++HNI L A++IPG N
Sbjct: 470 LANRRILLFCDNMGVVQVINNLSA-KSPPVVKVMRHLVFLALKHNIWLKAKHIPGCQNIL 528
Query: 390 ADSLSR 395
ADSLSR
Sbjct: 529 ADSLSR 534
>gi|12958098|gb|AAK07486.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 1311
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 77/385 (20%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 498 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 555
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 556 DIPKTAITTPFDLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 611
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG---------IMWNPTLDSKS 239
+ RA L + +N+++ L+ V + +LG + N L +S
Sbjct: 612 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLGHHIDSTGISPLPNRILALES 670
Query: 240 LPLEKQST-IQRY--------------------LLTLTQIQWWSVALHRSS-PIFPQAPQ 277
P+ T ++R+ L L + SV L + F +A Q
Sbjct: 671 FPIPTTLTQLRRFIGIINYYRRFIPHCADILQPLTDLLGCKEKSVTLPSVAIAAFERAKQ 730
Query: 278 ------------------VFVSTDASNSGWGA----IVDNHS-----LGGVWSDHQEMWH 310
+ ++TDASN+ GA +V+N S Q +
Sbjct: 731 AIAHATKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLAFFSQKMQAAQTRYS 790
Query: 311 INLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLA 370
+E+ A+ A+ +L+ + IQ+D++ + + + S + +R ++ +
Sbjct: 791 TFGRELLAIYLAIRHFRHLLEGRSFTIQTDHKPLTYAFNAKPDRYSPREIRHLDYI---- 846
Query: 371 VRHNITLMARYIPGKFNTWADSLSR 395
T RY PG N AD+LSR
Sbjct: 847 --SQFTTDIRYTPGSDNVVADALSR 869
>gi|48696606|ref|YP_024968.1| polymerase [Ross's goose hepatitis B virus]
gi|325441|gb|AAA45748.1| polymerase [Ross's goose hepatitis B virus]
Length = 785
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L++ +Y P G+ +P + T + + + R
Sbjct: 442 ISLDLSQAFYHLPLNPACSSRLAISDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 501
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S++ A + LQ L +N +++ PV ++LG +
Sbjct: 502 RFNVWTFTYMDDFLLCHPNARHLNSRSHAVCSFLQELGVRINFDKTTPSPVTEIKFLGYL 561
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D K + +E Q + R ++ QI W
Sbjct: 562 ----IDDKFMKIEDQRWNELRQVIKKIQIGKW 589
>gi|291237364|ref|XP_002738605.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 556
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 150/373 (40%), Gaps = 72/373 (19%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN---W 164
G L KID+ A+ P+R L + + LPFGL SAP +F ++ + W
Sbjct: 153 GSLLAKIDVKHAFRLCPVRKEDWHLLGFFWEGCYFFDRVLPFGLRSAPYLFNRIADAIHW 212
Query: 165 IANYLRNLGMRVIVYLDDLL---LGNQDS------VLLRS-------------QARAAVA 202
I ++ R + YLDD L L N ++ V+L+S + +V
Sbjct: 213 IVSH-RARNTDFLHYLDDFLTVGLANTNACQHNMDVMLQSCHHLGVPIATEKVEGPCSVI 271
Query: 203 T-----LQSLRWSVNLERSVLWPV----------QTC---QYLGIMWNPTLDSKSLP--- 241
T L ++ + L + L + TC + L ++ + K +P
Sbjct: 272 TFLGVELDTVNMVIRLPKDKLADLLIKLPSCLTRHTCSKRELLSLIGCLSFACKCIPAGR 331
Query: 242 --------LEKQSTIQRYLLTLTQ-----IQWWSVALHR-------SSPIFPQAPQVFVS 281
+ +T ++TLT +QWW L +P + +P+ +
Sbjct: 332 IFLRRMIDISMTATSLSQVITLTDEFWHDVQWWCDFLPSWNGTASLLNPNWIPSPEFELF 391
Query: 282 TDASNS-GWGAIVDNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPVLQDKVVLI 337
TDAS + G+GA H W + ++ I KE+ + + + +
Sbjct: 392 TDASATLGYGAFYKGHWFTNTWPTFITNDPLYSIACKELLPILLSSLIWGHLWFGLRIRF 451
Query: 338 QSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQK 397
DN +VV I K+G + ++++ V LF A +N +M +I G N ADSLSRQ+
Sbjct: 452 HCDNISVVQ-IWKKGSSSCPRIMQLVRLLFFTAASNNFHVMISHISGFNNDIADSLSRQQ 510
Query: 398 ELPDWHLLPEVTQ 410
L L P+ +
Sbjct: 511 ILRFQRLAPQADR 523
>gi|291237354|ref|XP_002738600.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 443
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 151/397 (38%), Gaps = 80/397 (20%)
Query: 91 KKFHLINHFRVPD---FLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM 144
K+ H + + R+ D F+ + G L KID+ A+ P+R L + +
Sbjct: 17 KEDHSLVYSRIDDAVAFIHKHGHGSLLAKIDVKHAFRLCPVRKEDWHLLGFFWEGCYFFD 76
Query: 145 TCLPFGLASAPQVFAKLTN---WIANYLRNLGMRVIVYLDDLL-LGNQDSVLLRSQARAA 200
LPFGL SAP +F ++ + WI ++ R + YLDD L +G ++ +
Sbjct: 77 RVLPFGLRSAPYLFNRIADAIHWIVSH-RARNTDFLHYLDDFLTVGPANTNACQHNMDVM 135
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLP--------------LEKQS 246
+ + L + E+ V P +LG+ + LP L + +
Sbjct: 136 LQSCHHLGVPIATEK-VEGPCSVITFLGVELDTVNMVIRLPKDKLADLLVKLPSWLTRHT 194
Query: 247 TIQRYLLTLT------------------------------------------QIQWWSVA 264
+R LL+L +QWW
Sbjct: 195 CSKRELLSLIGCLSFACKCIPAGRIFLRRMIDISMTATSLSQVITLTDEFWHDVQWWCDF 254
Query: 265 LHR-------SSPIFPQAPQVFVSTDASNS-GWGAIVDNHSLGGVWSD---HQEMWHINL 313
L +P + +P+ + TDAS + G+GA H W + ++ I
Sbjct: 255 LPSWNGTASLLNPNWIPSPEFELFTDASATLGYGAFYKGHWFANTWPTFITNDPLYSIAW 314
Query: 314 KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRH 373
KE+ + + + + DN +VV I K+G + ++++ V LF A +
Sbjct: 315 KELLPILLSSLIWGHLWYGLRIRFHCDNISVVQ-IWKKGSSSCPRIMQLVRLLFFTAASN 373
Query: 374 NITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQ 410
N +M +I G N ADSLSRQ+ L L P+ +
Sbjct: 374 NFHVMISHISGFNNDIADSLSRQQILRFQRLAPQADR 410
>gi|313236762|emb|CBY12015.1| unnamed protein product [Oikopleura dioica]
Length = 486
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++GD +VK D + + +P+ ++ + + L FGL +AP ++ +
Sbjct: 210 LLKKGDLMVKYDDKRGFHQMPLAEESKKMACFEWGGKKFVNNILCFGLPAAPGIYQNMNL 269
Query: 164 WIANYLRNLGMRVIVYLDDLLL-------GNQDSVL----LRSQARAAVATLQSLRWSVN 212
N+LR G++ +YLDD L+ ++ +L + +A ATL +L VN
Sbjct: 270 VGINFLRKNGIKATLYLDDRLIIITPKSEAHRQKLLEGKEVCKEAWITAATLVALGGFVN 329
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLP 241
+E+S P Q ++LG + + ++ +P
Sbjct: 330 IEKSEFIPKQRMEFLGFILDSETETIEIP 358
>gi|313235656|emb|CBY11109.1| unnamed protein product [Oikopleura dioica]
Length = 428
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++GD +VK D + + +P+ ++ + + L FGL +AP ++ +
Sbjct: 22 LLKKGDLMVKYDDKRGFHQMPLAEESKKMACFEWGGKKFVNNILCFGLPAAPGIYQNMNL 81
Query: 164 WIANYLRNLGMRVIVYLDDLLL-------GNQDSVL----LRSQARAAVATLQSLRWSVN 212
N+LR G++ +YLDD L+ ++ +L + +A ATL +L VN
Sbjct: 82 VGINFLRKNGIKATLYLDDRLIIITPKSEAHRQKLLEGKEVCKEAWITAATLVALGGFVN 141
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLP 241
+E+S P Q ++LG + + ++ +P
Sbjct: 142 IEKSEFIPKQRMEFLGFILDSETETIEIP 170
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 274 QAPQVFVSTDASNSGWGAIVD--NHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
Q + + TDASN +V+ N S W + HI +KE AV+ ALE L+
Sbjct: 265 QNAGIIIYTDASNHAGAIVVEEWNISEKFAWDEEYASDHICIKEAVAVKYALEWYAKRLE 324
Query: 332 DKVVLIQSDNQTVVSYIHKEG---GTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNT 388
+K V DN +VV EG G+K ++ + + +++ A++ N+ L ++ K
Sbjct: 325 NKKVTFLVDNSSVV-----EGAVSGSKDLRMNKILVRIWETALKFNMDLKLEWVSTKLQK 379
Query: 389 WADSLSR 395
AD SR
Sbjct: 380 -ADEPSR 385
>gi|308500992|ref|XP_003112681.1| hypothetical protein CRE_30766 [Caenorhabditis remanei]
gi|308267249|gb|EFP11202.1| hypothetical protein CRE_30766 [Caenorhabditis remanei]
Length = 838
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 151/403 (37%), Gaps = 90/403 (22%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCLPFGLASAPQVFA 159
FL + D Y H+ I + L+ D LPFGL++AP +F
Sbjct: 315 FLSEACYAATFDFRSGYHHIKISEASSDLLAFSLSDPPSSPFLKFNALPFGLSTAPWLFT 374
Query: 160 KLTNWIANYLRNLGMRVIVYL-DDLLLGNQDSV------LLRSQARAAVATL-------- 204
K+ + R G+ + +YL D L+L ++R +AA +
Sbjct: 375 KIFRPLVGRWRAAGINIFLYLDDGLILAKTREEAERAVRMVREDLKAAGVCVAEDKSNWV 434
Query: 205 --------------------------QSLRWSVNLER-----SVLWPVQTCQYLGIM--- 230
SLR ++L + SVL + C YL +
Sbjct: 435 PSAQFTWLGIRGDLSERTVRLTGKRENSLRDQISLLKRSRAPSVLDRQKMCGYLSSLTIV 494
Query: 231 -----------WNPTLDSKSLPLEKQSTIQRYLLT--LTQIQWWSVALHRSSPIFPQA-- 275
+ ++ LE+ +I+R L ++++ +W L I
Sbjct: 495 AGHEAIGRQRQMASVVAEETDGLERAGSIRRQLSEGEISELDFWKEKLESGGMIRGMEEE 554
Query: 276 --PQVFVSTDASNSGWGAIVDNHS---------LGGVWSDHQEMWHINLKEMFAVRSALE 324
PQ F+ TDAS G GA++ N S LGG ++ L+E+ AV A+E
Sbjct: 555 FEPQWFLFTDASAEGLGAVLKNGSGQTVMRMSELGGTGFQNE---SSALRELRAVLMAVE 611
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREV--EALFDLAVRHNITLMARYI 382
R + + VLI +D+Q V + K ++ + + E E+L + I +I
Sbjct: 612 R-MASWKRGAVLIHTDSQAAVIILRKGSMKRALQSVAERVWESLRSIGQAKYI-----WI 665
Query: 383 PGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFA 425
P + N AD SR + DW + + +WG + D FA
Sbjct: 666 PREQNKEADEASRDFDYDDWAVQNWAFEWAQKRWGEVKCDWFA 708
>gi|301628678|ref|XP_002943476.1| PREDICTED: hypothetical protein LOC100496977 [Xenopus (Silurana)
tropicalis]
Length = 639
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 100 RVPDF---LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ D L G K+DLSQAY +P+ + +++L++ ++ LPFG+ SAP
Sbjct: 417 RIEDLFASLAGGKRFSKLDLSQAYLQIPVHENSRKYLTITTHKGMFVYNRLPFGITSAPS 476
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+F + + L + V +LDD+L+ +D S A + L+ V E+
Sbjct: 477 IFQRAMEQVLQGLPS----VHCFLDDILITGRDDAHHLSNLEAVLNRLEKCGLRVKKEKC 532
Query: 217 VLWPVQTCQYLGIM 230
+ + +YLG M
Sbjct: 533 EFFK-NSLEYLGHM 545
>gi|40786826|gb|AAR89920.1| polymerase protein [Ross's goose hepatitis B virus]
Length = 786
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L++ +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAISDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG +
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGVRINFDKTTPSPVTEIKFLGYL 562
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D K + +E Q + R ++ QI W
Sbjct: 563 ----IDDKFMKIEDQRWNELRQVIKKIQIGKW 590
>gi|270015991|gb|EFA12439.1| hypothetical protein TcasGA2_TC016174 [Tribolium castaneum]
Length = 467
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F +DL Y+H+P+ + + + +D Y T +PFGL +AP VF ++ N
Sbjct: 317 LAGGKFFTSLDLFSGYYHIPVSEDSIHYTAFITQDGHYEFTRVPFGLTNAPAVFQRMINT 376
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
LR +V++YLDD+L+ R + LQ ++NL++ Q
Sbjct: 377 ALGQLR--FSKVLIYLDDILIPAPTISESLHLLRIVLKVLQDNGLTLNLKKCYFLKKQ-I 433
Query: 225 QYLG 228
+YLG
Sbjct: 434 EYLG 437
>gi|301614961|ref|XP_002936954.1| PREDICTED: hypothetical protein LOC100494000 [Xenopus (Silurana)
tropicalis]
Length = 965
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 136/360 (37%), Gaps = 74/360 (20%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG + K+D+ A+ +P+ P L ++ Y CLP G + + F + +I
Sbjct: 581 RGALMAKVDVESAFRLLPVHPESLHLLGCHFKGGYYVDRCLPMGCSISCSYFEAFSTFIE 640
Query: 167 NYLRNLG--MRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+R VI YLDD L +L + V + L + V L TC
Sbjct: 641 WVVRKRAGVSAVIHYLDDFLCVGPGHTMLCAVLLRTVQAVADL-FGVPLAPDKTEGPSTC 699
Query: 225 -QYLGIMWNPTLDSKSLPLEKQSTIQRYL--------LTLTQIQWWSVALHRSSPIFPQA 275
++LGI + LP +K ++ + +TL Q+Q L+ + I P
Sbjct: 700 LRFLGIEIDTVRQECRLPQDKIQQLKEEVAYAQAAKKVTLRQLQSLLGKLNFACRIIPMG 759
Query: 276 ----------------PQVFVS-------------------------------------- 281
PQ F+
Sbjct: 760 RVFSRNLALATAGIRQPQHFIRLNKGHKEDLGVWKTFLQGFNGKLYWHNQPRANEEFHFF 819
Query: 282 TDASNS-GWGAIVDNHSLGG----VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVL 336
TDA+ S G+GA W++ + ++ L E+F + A+E P L ++ V+
Sbjct: 820 TDAAGSGGFGAYFQGKWCAAPWPREWTETKLTSNLTLLELFPIIVAMELWGPQLANQAVV 879
Query: 337 IQSDNQTVVSYIHK-EGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+DN +VV I+ G++ L ++ L ++ N+ A+++PG N ADSLSR
Sbjct: 880 FYTDNMSVVMAINNLTSGSRPVLCL--LKHLVLRCLQLNVKFGAKHVPGYTNEIADSLSR 937
>gi|391335687|ref|XP_003742221.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 540
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F KIDLS+AY VP+ Q L++ L+ M LPFG+ +AP +F +L +
Sbjct: 335 LSNGRFFSKIDLSEAYLQVPVEAGSQSILTINTPKGLFKMKRLPFGIKTAPSIFQRLMDS 394
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L + YLDD+++ + V + L ++ L++ +
Sbjct: 395 LVSDLPG----TVAYLDDIMVSSGTKVEHEQRVIQLFKRLNDFNLTIRLDKCSFLKDEI- 449
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 450 RFLGFILN 457
>gi|391334995|ref|XP_003741883.1| PREDICTED: uncharacterized protein K02A2.6-like, partial
[Metaseiulus occidentalis]
Length = 890
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F KIDL++AY + + P + +++ L+ MT LPFGL +AP +F ++ +
Sbjct: 560 LAGGKFFSKIDLAEAYLQIEVHPDDRNLITINTPKGLFEMTRLPFGLKTAPSLFQRIMDE 619
Query: 165 IANYLRNLGM-RVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+G+ +YLDD+L+ + + R + +A +Q + + +E+ Q
Sbjct: 620 TL-----VGIPGTAIYLDDILVTGRTAKEHRDRVLKVMAKIQKGGFRIRMEKCSFLQKQI 674
Query: 224 CQYLGIMWN 232
+YLG + +
Sbjct: 675 -KYLGFIID 682
>gi|301631326|ref|XP_002944749.1| PREDICTED: transposon Ty3-I Gag-Pol polyprotein-like [Xenopus
(Silurana) tropicalis]
Length = 1182
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DLSQAY +P+ + +++L++ ++ LPFG+ SAP +F +
Sbjct: 96 LAGGKRFSKLDLSQAYLQIPVHENSRKYLTITTHKGMFVYNRLPFGITSAPSIFQRAMEQ 155
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ L + V +LDD+L+ +D S A + L+ V E+ + +
Sbjct: 156 VLQGLPS----VHCFLDDILITGRDDAHHLSNLEAVLNRLEKCGLRVKREKCEFFK-NSL 210
Query: 225 QYLGIM 230
+YLG M
Sbjct: 211 EYLGHM 216
>gi|432888034|ref|XP_004075034.1| PREDICTED: uncharacterized protein LOC101156905 [Oryzias latipes]
Length = 1290
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 132/327 (40%), Gaps = 68/327 (20%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R ++ KF R+ D ++R +L IDL + Y+ VP+ Q + + L
Sbjct: 946 RYLNAMSKFDSYPTPRIDDLIERLGKAKYLTTIDLCKGYWQVPLTARSQEYTAFRTPWGL 1005
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
+ T LPFGL AP F +L + + L L YLDD++
Sbjct: 1006 FEFTVLPFGLHGAPATFQRLMDQV---LGGLDGFACAYLDDIV----------------- 1045
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWW 261
+ S W +LE L ++ +G+ NP + IQR L T
Sbjct: 1046 --VYSTTWDEHLEH--LKVLECLHSVGLTVNPAKAEAAF-----RDIQRSLST------- 1089
Query: 262 SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINL-------- 313
+ LH SP F + + TDAS G GA++ L G D + +I+
Sbjct: 1090 NPVLH--SPDFDKP--FTLQTDASERGIGAVL----LQGAPGDQHPVAYISRKLMPRETR 1141
Query: 314 -----KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFD 368
KE A++ A++ L + +++D++ +S++ + T ++ R A+
Sbjct: 1142 YSTVEKEALAIKWAMDSFKYYLLGREFTLETDHK-ALSWLERMKDTNG-RITRWYLAMQP 1199
Query: 369 LAVRHNITLMARYIPGKFNTWADSLSR 395
+ +YIPGK N AD LSR
Sbjct: 1200 FCYK------VKYIPGKDNATADYLSR 1220
>gi|301622164|ref|XP_002940410.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 977
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ + K+DL AY + I+
Sbjct: 47 GKKDGGLRPCIDYRGLNKITIKNRYPLPLISELFDRVKGANIYTKLDLRGAYNLIRIKEG 106
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 107 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 164
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTI 248
+ RS + + L+ LE+ + V + Q+LG + SK L ++ +
Sbjct: 165 NLSDHRSHVKEVLRRLRENNLYAKLEKCT-FEVNSVQFLGFH----ISSKGLEMDPEKV- 218
Query: 249 QRYLLTLTQ 257
R +L TQ
Sbjct: 219 -RAVLDWTQ 226
>gi|327267666|ref|XP_003218620.1| PREDICTED: hypothetical protein LOC100555260 [Anolis carolinensis]
Length = 658
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 280 VSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQS 339
++TDAS GWGA + N + G WS ++ HIN E+ A+ A++ + +++V+ + +
Sbjct: 511 LTTDASTLGWGAHLQNLTAHGRWSTQEQKLHINALELLAMEKAMKSFTRLTENQVIQLVT 570
Query: 340 DNQTVVSYIHKEGGTKSF 357
DN TV +YI++EG S
Sbjct: 571 DNTTVKAYINREGPAHSI 588
>gi|9625572|ref|NP_039822.1| P-protein [Duck hepatitis B virus]
gi|81936185|sp|Q66403.1|DPOL_DHBVQ RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
gi|59062|emb|CAA42769.1| P-protein [Duck hepatitis B virus]
Length = 788
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D K + +E+ I+ R ++ +I W
Sbjct: 565 ----IDQKFMKIEESRWIELRTVIKKIKIGAW 592
>gi|357630418|gb|EHJ78555.1| hypothetical protein KGM_22402 [Danaus plexippus]
Length = 233
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+D + VVSYI+KEGGT+S KLL L + + NI L+A+YIPG++N D+LSR
Sbjct: 177 TDKRIVVSYINKEGGTRSLKLLELTRWLLSVLDKVNIHLIAQYIPGRYNVEVDALSR 233
>gi|313214780|emb|CBY41042.1| unnamed protein product [Oikopleura dioica]
Length = 725
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++GD ++K D + + +P+ ++ + + L FGL +AP ++ +
Sbjct: 210 LLKKGDLMIKFDDKRGFHQMPLAEESKKMACFEWGGKKFVNNILCFGLPAAPGIYQSMNL 269
Query: 164 WIANYLRNLGMRVIVYLDD-LLLGNQDSVLLR----------SQARAAVATLQSLRWSVN 212
N+LR G++ +YLDD L++ S R +A ATL +L VN
Sbjct: 270 VGINFLRKNGIKATLYLDDRLVIVTPKSKAHRQRLIEGKEVCKEAWLTAATLVALGGFVN 329
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLP 241
+E+S P Q ++LG + + ++ +P
Sbjct: 330 IEKSEFIPKQRMEFLGFILDSETETIEIP 358
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 274 QAPQVFVSTDASNSGWGAIVD--NHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
Q + + TDASN +++ N S W + HI +KE AV+ ALE L+
Sbjct: 453 QNAGIIIYTDASNHAGAIVIEEWNISEKFAWDEEYASDHICIKEAVAVKYALEWYAKRLE 512
Query: 332 DKVVLIQSDNQTVVSYIHKEG---GTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNT 388
+K V DN +VV EG G+K ++ + + +++ A++ N+ L ++ K
Sbjct: 513 NKKVTFLVDNSSVV-----EGAVSGSKDLRMNKILVRIWETALKFNMDLKLEWVSTKLQK 567
Query: 389 WADSLSR 395
AD SR
Sbjct: 568 -ADEPSR 573
>gi|9625571|ref|NP_039821.1| hypothetical protein DHBVgp3 [Duck hepatitis B virus]
gi|59061|emb|CAA42768.1| unnamed protein product [Duck hepatitis B virus]
Length = 838
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 495 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 554
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 555 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQ 614
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D K + +E+ I+ R ++ +I W
Sbjct: 615 ----IDQKFMKIEESRWIELRTVIKKIKIGAW 642
>gi|40786831|gb|AAR89924.1| polymerase protein [Ross's goose hepatitis B virus]
Length = 783
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L++ +Y P G+ +P + T + + + R
Sbjct: 440 ISLDLSQAFYHLPLNPASSSRLAISDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 499
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG +
Sbjct: 500 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGVRINFDKTTPSPVTEIKFLGYL 559
Query: 231 WNPTLDSKSLPLEKQ 245
+D K + +E Q
Sbjct: 560 ----IDDKYMKIEDQ 570
>gi|37549281|gb|AAQ93079.1| P protein [Duck hepatitis B virus]
Length = 788
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + +S L S + A LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNSRHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKYMKIEE 574
>gi|308483543|ref|XP_003103973.1| hypothetical protein CRE_02412 [Caenorhabditis remanei]
gi|308258630|gb|EFP02583.1| hypothetical protein CRE_02412 [Caenorhabditis remanei]
Length = 1473
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+F +IDL++AY V + P Q+ L + L+ LPFG+ SAP +F ++ +
Sbjct: 657 LNGGNFFTQIDLAEAYLQVEMDPDSQKLLVINTHLGLFTYNRLPFGVKSAPGIFQQIMDT 716
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L V YLDD+++ + +Q + + +E+ ++
Sbjct: 717 MLNGLEG----VFTYLDDIIICGSTIEEHNERVLKVFGRIQEYGFRIKMEKCSFL-MEEI 771
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 772 KFLGFIIN 779
>gi|301609203|ref|XP_002934174.1| PREDICTED: hypothetical protein LOC100494971 [Xenopus (Silurana)
tropicalis]
Length = 1899
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + IR + + RD
Sbjct: 415 YRGLNKITVKNRYPLPLISKLFDRVKGATVFSKLDLRGAYNLIRIREGDEWKTAFNTRDG 474
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N+I L LG V+VYLDD+L+ + + R+ +
Sbjct: 475 HYEYLVMPFGLCNAPAVFQELVNYIFRDL--LGRTVVVYLDDILIYSNNLSDHRAHVQEV 532
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ L+ +E+ V + V + +LG +
Sbjct: 533 LFRLRQNHLYAKIEKCV-FEVSSVHFLGYI 561
>gi|432939100|ref|XP_004082581.1| PREDICTED: uncharacterized protein LOC101155559 [Oryzias latipes]
Length = 1196
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYF 121
+++ +DG Q R + +K + ++ F R+ D ++R ++ +DL + Y+
Sbjct: 620 VMVPKKDGSQ----RPCIDFRKVNAVSCFDAYPMPRIDDLVERVGTAKYITTLDLCKGYW 675
Query: 122 HVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLD 181
+P+ + +++ + LY T +PFGL AP F +L + + LR YLD
Sbjct: 676 QIPLDETSKQYTAFCAPTGLYHFTVMPFGLHGAPATFQRLMDAV---LRGFEAFSAAYLD 732
Query: 182 DLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGI 229
D+++ +Q RA ++ ++ ++N ++ W QYLG
Sbjct: 733 DVVIFSQSWEDHLMHLRAVLSAIEGAGLTLNAQK-CEWAKGEVQYLGF 779
>gi|307212135|gb|EFN87992.1| hypothetical protein EAI_06111 [Harpegnathos saltator]
Length = 213
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 280 VSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQS 339
+ +DAS + WGA + WS HIN E+ A +AL L D VL++
Sbjct: 6 IFSDASLNRWGASCGDSRTHVWWSADDRALHINTLELKAAFNALRCFTADLSDCDVLLRI 65
Query: 340 DNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKE- 398
DN T ++YI+K G + +L + NI + A I N AD SR K+
Sbjct: 66 DNTTALAYINKFGSVQYPRLPAISGEIGCWCEERNIFIFALTISSMENFIADCESRCKDP 125
Query: 399 LPDWHLLPEVTQHIFAQWGVPEIDLFATA 427
+W L E Q + +G +I+LFA+A
Sbjct: 126 GTEWCLSDEAFQQVNKAFGPFDINLFASA 154
>gi|147841519|emb|CAN68662.1| hypothetical protein VITISV_004407 [Vitis vinifera]
Length = 605
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ + K+DL Y + IR + + +D LY +PFGL++AP F +L
Sbjct: 267 DRLEGHEVFTKLDLRSDYHQICIRLGDEWKTNFKTKDGLYEWLVMPFGLSNAPSTFMRLM 326
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
N + + +G V+VY DD+L+ ++D S R + LQ+ + +NL++
Sbjct: 327 NQVLHSF--IGKFVVVYFDDILIYSKDEEEHLSHLREVLLALQANKLYINLKKC 378
>gi|326669542|ref|XP_003199037.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1487
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 164/394 (41%), Gaps = 98/394 (24%)
Query: 80 QDLGDRAFLSLKKFHLIN-HFRVP--------DFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R + + + I +R P + L+ + K+DL AY + I+ +H+
Sbjct: 552 KDGGLRPCIDYRGLNAITVKYRYPLPLVPAALELLRTAKYFTKLDLRSAYNLIRIKKNHE 611
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQD 189
+ Y +PFGLA++P VF N + R++ R VIVY+DD+L+ ++
Sbjct: 612 WKTAFSTSSGHYEYLVMPFGLANSPSVFQAFIN---DVFRDMLNRWVIVYIDDILIYSES 668
Query: 190 SVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQST-- 247
S RA + L R LE+ + +LG + + ++ + +++Q
Sbjct: 669 LEEHISHVRAVLQRLIEHRLYAKLEKCEFHQT-SISFLGYI----IGTEGVAMDEQKVQA 723
Query: 248 ------------IQRY--------------------LLTLTQ-----IQWWSVA------ 264
+QR+ L +LT+ I+W A
Sbjct: 724 VLKWPKPRTIKELQRFLGFANFYRRFIRNFSLVASPLTSLTRGKGSIIKWNDTAERAFAK 783
Query: 265 -LHR--SSPIF----PQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDH------------ 305
HR ++PI P+ P V DASN+G GAI+ G H
Sbjct: 784 LKHRFATAPILHHPNPELP-FIVEIDASNTGIGAILSQKQ-GSPSKSHPCAFFSRKLNSA 841
Query: 306 QEMWHINLKEMFAVRSALER---KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
++ + + +E+ A+++A+E L + K +I +D++ + YIH S K L
Sbjct: 842 EQNYDVGNRELLAMKAAMEEWRHWLEGAKHKFTVI-TDHKN-LEYIH------SAKRLNP 893
Query: 363 VEALFDL-AVRHNITLMARYIPGKFNTWADSLSR 395
+A + L R + T+ YIPG N AD+LSR
Sbjct: 894 RQARWALFFTRFDFTVT--YIPGSKNVKADALSR 925
>gi|382948090|gb|AFG33160.1| DNA polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGXXVYYFRKAPMGVGLSPFXLHXFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 268
>gi|56155209|gb|AAV80394.1| polyprotein [Hordeum vulgare subsp. vulgare]
Length = 1486
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 157/389 (40%), Gaps = 81/389 (20%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVP 124
L + +DG + L + L K + N + +P+ L+ K+DL Y +
Sbjct: 599 LFVKKKDGTERLC-VDYRPLNKKTIKNKYPLPNINELFEQLKGAKVFSKLDLRMGYHQIR 657
Query: 125 IRPSHQRFLSVVYRDTL--YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD 182
IR + +R + Y T + FGL +AP F +L N+I + +N V +YLDD
Sbjct: 658 IR--EEDIPKTAFRTSFGSYEYTVMSFGLPNAPPTFCRLMNYIFSPFKN--EFVFLYLDD 713
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG-------------- 228
+L+ ++D R + L+ + + W ++ YLG
Sbjct: 714 ILVFSEDEEEHEKHLRLVLDKLREYKLYAKFSKCEFW-LKEVVYLGHIISAEGIKVDPSK 772
Query: 229 ----IMWNPTLDSKSLP------------LEKQSTIQRYLLTLTQ--IQW-WSVALH--- 266
+ W P + K L +E S I + L +L Q +++ WS
Sbjct: 773 VQAIVEWEPPQNVKQLRSFLGLAGYCRRFVENFSKIAKPLSSLLQKGVKYVWSPECQLAF 832
Query: 267 -------RSSPIFPQAP-------QVFVSTDASNSGWGAIVDNHSLGGVWSDHQ-----E 307
S+P+ AP QVF DAS G+GA++ ++ Q +
Sbjct: 833 DTLKEKLTSTPVL--APPDDSKPYQVFC--DASLQGFGAVLMQDRKVVAYTSRQLKPAEK 888
Query: 308 MWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALF 367
+ ++ E+ AV AL +L D+ V + +D+++ + YI + + + R VE L
Sbjct: 889 NYPVHDLELAAVVHALMTWRHLLLDRKVEVFTDHKS-LKYIFTQPNL-NLRQTRWVEMLQ 946
Query: 368 DLAVRHNITLMARYIPGKFNTWADSLSRQ 396
D Y PGK N AD+LSR+
Sbjct: 947 DF------NPSVEYTPGKANVVADALSRK 969
>gi|311036256|gb|ADP55744.1| polymerase [Duck hepatitis B virus]
Length = 787
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 564 ----IDQKYMKIEE 573
>gi|270016456|gb|EFA12902.1| hypothetical protein TcasGA2_TC001990 [Tribolium castaneum]
Length = 933
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 148/355 (41%), Gaps = 45/355 (12%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+DL +AY +P+ S + L+ T + FGL +A Q F + + + N L
Sbjct: 505 VDLVRAYHQIPVEASSIPKTATTTPFGLFEFTRMQFGLRNAAQSFQRFIHEVLNGLHF-- 562
Query: 174 MRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM--- 230
YL+D+L+ + R L ++N E+ + ++LG
Sbjct: 563 --CFPYLNDILIASTSERERTDHLRKVFERLLKYGLTINPEKCSFGNSK-VKFLGYEVSA 619
Query: 231 --WNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSP----IFPQAPQ-VFVSTD 283
P D K++T RYL + Q S H + I P A + ++ D
Sbjct: 620 DGTKPLTDRVKSKTAKRTTKHRYLGPPNRKQHSSCVKHDLAQAMLLIHPTATDTISLTVD 679
Query: 284 ASNSGWGAIVDNHSLGGVW----------SDHQEMWHINLKEMFAVRSALERKLPVLQDK 333
AS+ GA+++ + GG W + Q+ + +E+ A+ SA++ L+ +
Sbjct: 680 ASDFAMGAVLEQNQ-GGSWKLLSFFSKKLTPAQQKYSTYDRELLAIYSAVKALQHFLEGR 738
Query: 334 VVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSL 393
+I +D++ +V + ++ + + R ++ + T + +I GK N AD+L
Sbjct: 739 HFVIYTDHKPLVYALTQKSDKATPRQARHLDYI------SQFTTVINHISGKSNVVADTL 792
Query: 394 SRQKELP-----DWHLLPEVTQHIFAQWGVPEID-LFATANSAAFLVQGGPLKFP 442
SR E+ D+ L E +Q PE+ L A +S A +Q P+K P
Sbjct: 793 SRISEIDTPTPIDYQTLRE------SQDVDPELQTLLAQPDSTALKLQ-YPVKSP 840
>gi|302319038|gb|ADL14709.1| P protein [Duck hepatitis B virus]
Length = 787
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 564 ----IDDKFMKIEE 573
>gi|270014457|gb|EFA10905.1| hypothetical protein TcasGA2_TC001731 [Tribolium castaneum]
Length = 1398
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ + +DL Y+ +PI + + + S V Y +PFGL +AP+VF +
Sbjct: 618 DRLQGAKYFSSLDLKSGYYQIPISENSRHYTSFVTPSGQYEYLRMPFGLTNAPRVFQRFM 677
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N N LR + VYLDD+LL + R + L++ ++N ++ +
Sbjct: 678 N---NLLRPVSKIAAVYLDDVLLHSNTEGQALCDLREVLDVLRAEGLTLNFQKCAFLK-E 733
Query: 223 TCQYLG 228
T +LG
Sbjct: 734 TVHFLG 739
>gi|44829149|gb|AAS47828.1| polyprotein [Duck hepatitis B virus]
Length = 788
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + LT + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLLTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLG 562
>gi|45775514|gb|AAS77351.1| polyprotein [Duck hepatitis B virus]
Length = 788
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDEKYMKIEE 574
>gi|384483422|gb|EIE75602.1| hypothetical protein RO3G_00306 [Rhizopus delemar RA 99-880]
Length = 841
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 358 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 417
Query: 171 NLGMRVIVYLDDLLLGN-QDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGI 229
N V VY+DD+++G DS+ QA +AV + + + + ++ LG
Sbjct: 418 N----VHVYVDDIVIGTPGDSMENHYQAVSAVIDRLTQHNMILNPQKCHFGKRSVHLLGF 473
Query: 230 MWNPTLDSKSL---PLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASN 286
+ KSL ++ +Q + ++ I +V L SP P ++V+TDASN
Sbjct: 474 CISEK--GKSLDPHDIDWTPELQVHFQSIKDISCSNVVL---SPYDP-TKSLYVATDASN 527
Query: 287 SGWGAIV 293
+G GA++
Sbjct: 528 TGVGAVL 534
>gi|1326016|emb|CAA86713.1| TY3-2 orfB [Saccharomyces cerevisiae]
Length = 1099
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 170/411 (41%), Gaps = 95/411 (23%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHF---RVPDFLQR---GDFLVKIDLSQAYFHV 123
+L+ +DG F+ D + +L K + + F R+ + L R +DL Y +
Sbjct: 386 VLVPKKDGTFRLCVD--YRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 443
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
P+ P + + V Y T +PFGL +AP FA+ ++A+ R+L V VYLDD+
Sbjct: 444 PMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFRDLRF-VNVYLDDI 499
Query: 184 L-------------------LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ-T 223
L L N++ ++ + + + A + L +S+ +++ + P+Q
Sbjct: 500 LIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK--IAPLQHK 557
Query: 224 C----------------QYLGIM-----WNPTLDSKSLPLEKQSTIQRYLLTLTQ----- 257
C ++LG++ + P + P IQ ++ +Q
Sbjct: 558 CAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP------IQLFICDKSQWTEKQ 611
Query: 258 ---IQWWSVALHRSSPIFP--QAPQVFVSTDASNSGWGAI---VDNHS----LGGVWSDH 305
I+ AL S + P ++TDAS G GA+ VDN + + G +S
Sbjct: 612 DKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKS 671
Query: 306 QEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLR 361
E N E+ + AL +L K +++D+ +++S +K R
Sbjct: 672 LESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPA------R 725
Query: 362 EVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHI 412
V+ D ++ TL Y+ G N AD++SR + + PE ++ I
Sbjct: 726 RVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAI----YTITPETSRPI 770
>gi|308458622|ref|XP_003091647.1| hypothetical protein CRE_18271 [Caenorhabditis remanei]
gi|308255420|gb|EFO99372.1| hypothetical protein CRE_18271 [Caenorhabditis remanei]
Length = 727
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 139/350 (39%), Gaps = 87/350 (24%)
Query: 115 DLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGM 174
DL Y+ +P++ + + L+ LPFGLA++P +F + L LG
Sbjct: 214 DLLAGYWQLPLKEESKEITAFAIGSELFEWNVLPFGLATSPAIFQAAMECVVGDL--LGT 271
Query: 175 RVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWS-VNLERSVLWPV-QTCQYLGIMWN 232
V VY+DDLL+ +++ ++ A L+ + S + L+ S W + YLG M
Sbjct: 272 CVFVYVDDLLIASEN---MKEHAIHVQTILERIEKSGMKLKASKCWIAREEVDYLGHMIT 328
Query: 233 PT-LDSKSLPLEKQSTIQR-------------------YLLTLTQIQW------------ 260
P + ++ ++K R ++++ ++I +
Sbjct: 329 PEGVKTEEAKVDKMKKFARPEDVKQLQSFLGLVGYYRNFIMSYSKIAYPLNFLTSKKNAW 388
Query: 261 -WSVALHR----------SSPIFPQA-PQVFVS--------TDASNSGWGAIVDNHSLGG 300
W S+P+ Q P+ +S TDAS G GA++ + G
Sbjct: 389 VWGTEQENAFVQLKSSVCSAPVLKQPDPETAISGARPYLIYTDASRQGVGAVLAQEANDG 448
Query: 301 ----------VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK 350
+ + +HI E A+ AL R ++ V++ +D++ ++S +
Sbjct: 449 EQHPIAFASKSLTSAETRYHITDLEALAMMFALRRFRTIIYGSQVIVFTDHKPLISLMR- 507
Query: 351 EGGTKSFKLLREVEALFDLAVRHNITLMA-----RYIPGKFNTWADSLSR 395
G++ L D +R +I L+ Y+ GK N AD+LSR
Sbjct: 508 --GSR----------LADRLMRWSIELIEFNPKIVYVKGKANVVADALSR 545
>gi|291239314|ref|XP_002739568.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 827
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 146/393 (37%), Gaps = 82/393 (20%)
Query: 78 GFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVY 137
DL D+ SL + + G L K D+ A+ +PI S + +
Sbjct: 415 SINDLIDKDEYSLSYVRVDDAITATQQAGHGALLCKTDIVDAFKLLPIHSSLWHLYGINW 474
Query: 138 RDTLYCMTCLPFGLASAPQVFAKLTN---WIANYLRNLGMRVIVY-LDDLLLGNQDSVLL 193
+D Y L FG S P++F +L+ WIA++ N G+ +++ LDD L D+
Sbjct: 475 QDNFYFFVRLAFGSRSNPKIFDQLSTAICWIAHH--NYGINKMLHLLDDFL--TIDAPSY 530
Query: 194 RSQARAAVATLQSLRWSVNLE-RSVLWPVQTCQYLGIMWNPTLDSKSLPLEK-------- 244
++ A+ TL R + L + P T ++LGI + LPL K
Sbjct: 531 DAERTMALLTLIFGRLGIPLAPHKTVGPTTTLEFLGIKLDTIKMEARLPLVKLNRLLDLL 590
Query: 245 ------QSTIQRYLLT---------------------LTQIQWWSVALHRSSPIFPQAPQ 277
+S + LL+ L ++ + LH I ++ Q
Sbjct: 591 DEFLLRRSCTKHQLLSLLGHLNFACRVVPPGRTFMSRLIELSKGTQKLHHHVGISSKSKQ 650
Query: 278 VFVSTDASNSGWGAI-----------------VDNHSLG------GVWSDHQEMWHINLK 314
SGW I D +G G W E W NL+
Sbjct: 651 DIRMWKEFLSGWNGISLFLDRYLTPAPDMQLFTDASGIGHGGYFRGYW--FHEKWETNLR 708
Query: 315 --EMFAVRSALERKLPVL----------QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
++ A ++ P++ K +L DN V ++K G +KS +++
Sbjct: 709 LDHDKSLSIAFQQLYPIVVAALLWGHQWTRKHILFHCDNMATVHIVNK-GRSKSPSIMKL 767
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ L A H+ A +IPGK N AD+LSR
Sbjct: 768 MRRLVITAASHSFMFSAVHIPGKSNIIADALSR 800
>gi|146291076|sp|Q7LHG5.2|YI31B_YEAST RecName: Full=Transposon Ty3-I Gag-Pol polyprotein; AltName:
Full=Gag3-Pol3; AltName: Full=Transposon Ty3-2 TYA-TYB
polyprotein; Contains: RecName: Full=Capsid protein;
Short=CA; AltName: Full=p24; Contains: RecName:
Full=Spacer peptide p3; Contains: RecName:
Full=Nucleocapsid protein p11; Short=NC; Contains:
RecName: Full=Ty3 protease; Short=PR; AltName: Full=p16;
Contains: RecName: Full=Spacer peptide J; Contains:
RecName: Full=Reverse transcriptase/ribonuclease H;
Short=RT; Short=RT-RH; AltName: Full=p55; Contains:
RecName: Full=Integrase p52; Short=IN; Contains: RecName:
Full=Integrase p49; Short=IN
Length = 1498
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 694 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 753
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 754 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 809
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 810 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 867
Query: 256 TQI------------QWWS---VALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 868 SKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGA 927
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 928 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 987
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 988 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAI--- 1036
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1037 -YTITPETSRPI 1047
>gi|391325581|ref|XP_003737311.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 1605
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + KIDLS+AY +P+ Q+ L++ LY M LPFG+ +AP +F +L +
Sbjct: 547 LNGGTWFSKIDLSEAYLQIPVDAESQKLLTINTPKGLYRMKRLPFGIKTAPSIFQRLMDT 606
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ L YLDD+++ ++ ++ L L + Q
Sbjct: 607 LVADLEG----TTAYLDDIIVTSKTKAEHENRILKLFGRLAEFGLKAQLNKCSFMKSQI- 661
Query: 225 QYLGIM 230
QYLG +
Sbjct: 662 QYLGFI 667
>gi|301610293|ref|XP_002934698.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1244
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 78 GFQDLGDRAFLS---LKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + L K + N + +P D ++ + K+DL AY + IR
Sbjct: 397 GKKDGGLRPCIDYRWLNKITVKNRYPLPLISELFDRVKGANIYTKLDLRGAYNLIRIREG 456
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ +
Sbjct: 457 DEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSS 514
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQ 245
+ R + + L+ LE+ + V + Q+LG + SK L ++ +
Sbjct: 515 NLSDHRCHVKEVLRRLRENNLYAKLEKCT-FEVDSVQFLGFH----ISSKGLEMDPE 566
>gi|6322110|ref|NP_012184.1| gag-pol fusion protein [Saccharomyces cerevisiae S288c]
gi|285812571|tpg|DAA08470.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288c]
Length = 1498
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 694 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 753
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 754 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 809
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 810 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 867
Query: 256 TQI------------QWWS---VALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 868 SKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGA 927
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 928 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 987
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 988 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAI--- 1036
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1037 -YTITPETSRPI 1047
>gi|301605558|ref|XP_002932423.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1406
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L KF + N + +P D ++ K+DL AY + IR + + RD
Sbjct: 233 YRGLNKFTVKNRYPLPLISELFDRVKGATIFSKLDLRGAYNLIRIREGDEWKTAFNTRDG 292
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N I L LG V+VYLDD+L+ + R+ +
Sbjct: 293 HYEYLVMPFGLCNAPAVFQELVNDIFRDL--LGRSVVVYLDDILIYSNSLSDHRAHVQEV 350
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
++ L+ +E+ + + V + +LG +
Sbjct: 351 LSRLRQHHLYAKIEKCI-FEVSSVHFLGYI 379
>gi|118861|sp|P17192.1|DPOL_HPBDB RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
gi|325450|gb|AAA45754.1| P protein [Duck hepatitis B virus]
Length = 788
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNIWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKFMKIEE 574
>gi|308471722|ref|XP_003098091.1| hypothetical protein CRE_11332 [Caenorhabditis remanei]
gi|308269432|gb|EFP13385.1| hypothetical protein CRE_11332 [Caenorhabditis remanei]
Length = 1387
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+F +IDL++AY V + P Q+ L + L+ LPFG+ SAP +F ++ +
Sbjct: 572 LNGGNFFTQIDLAEAYLQVEMDPDSQKLLVINTHLGLFTYNRLPFGVKSAPGIFQQIMDT 631
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L V YLDD+++ + +Q + + +E+ ++
Sbjct: 632 MLNGLEG----VSTYLDDIIICGSTIEEHNERVLKVFGRIQEYGFRIKMEKCSFL-MEEI 686
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 687 KFLGFIIN 694
>gi|410026811|gb|AFV52546.1| DNA polymerase [Duck hepatitis B virus]
Length = 788
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + A R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGAEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDEKYMKIEE 574
>gi|173088|gb|AAA35184.1| has homology to retroviral pol genes; ORF2 TYB3-2 (5' end of coding
region not precisely determined), partial [Saccharomyces
cerevisiae]
Length = 1221
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 147/361 (40%), Gaps = 85/361 (23%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 417 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 476
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 477 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 532
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TC----------------QYLGIM-----WNPTL 235
+ A + L +S+ +++ + P+Q C ++LG++ + P
Sbjct: 533 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 590
Query: 236 DSKSLPLEKQSTIQRYLLTLTQ--------IQWWSVALHRSSPIFP--QAPQVFVSTDAS 285
+ P IQ ++ +Q I+ AL S + P ++TDAS
Sbjct: 591 SKIAQP------IQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDAS 644
Query: 286 NSGWGAI---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKV 334
G GA+ VDN + + G +S E N E+ + AL +L K
Sbjct: 645 KDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKH 704
Query: 335 VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLS 394
+++D+ +++S +K R V+ D ++ TL Y+ G N AD++S
Sbjct: 705 FTLRTDHISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAIS 756
Query: 395 R 395
R
Sbjct: 757 R 757
>gi|308448685|ref|XP_003087722.1| hypothetical protein CRE_23282 [Caenorhabditis remanei]
gi|308253265|gb|EFO97217.1| hypothetical protein CRE_23282 [Caenorhabditis remanei]
Length = 1135
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+F +IDL++AY V + P Q+ L + L+ LPFG+ SAP +F ++ +
Sbjct: 572 LNGGNFFTQIDLAEAYLQVEMDPDSQKLLVINTHLGLFTYNRLPFGVKSAPGIFQQIMDT 631
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L V YLDD+++ + +Q + + +E+ ++
Sbjct: 632 MLNGLEG----VSTYLDDIIICGSTIEEHNERVLKVFGRIQEYGFRIKMEKCSFL-MEEI 686
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 687 KFLGFIIN 694
>gi|360045497|emb|CCD83045.1| hypothetical protein Smp_185440 [Schistosoma mansoni]
Length = 989
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 69/353 (19%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ +DL Y+ +PI+ S + + RD Y +PFGLA AP F +L
Sbjct: 197 DRLQNATVFTVLDLRSGYWQLPIKESDRSKTAFTIRDKQYQFRRMPFGLAGAPFTFRRLM 256
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
+ + L N V VY DD+++ +Q A + ++ +N ++S +
Sbjct: 257 SLLLRDLDN----VEVYGDDVVVYSQTETDHVKHVEAVLKRIEEFGLRINKDKSQMAKSS 312
Query: 223 TCQYLGIMWNP----------TLDSKSLPLEKQSTIQ---------RY------------ 251
+ N T+ + ++P K+ Q R+
Sbjct: 313 ITLLGHKVGNGEIKPLPEKILTIKNVAVPNSKRKLRQFLGRAAFYSRFIRNFNEIAAPLY 372
Query: 252 -LLTLTQIQWWSVALHRSSPI------------FPQAPQVF-VSTDASNSGWGAIVDNHS 297
LL+ T+ W +A + I P+ + F V+TDAS+ G GA++
Sbjct: 373 KLLSNTKFSWTEIAQQTFNQIKNMLDDRQMTLRLPELEKPFTVTTDASDHGIGAVLSQSD 432
Query: 298 -----LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTV--VSYIHK 350
V + ++ + KE A+ A+++ P L + I++D++ + +
Sbjct: 433 RVVEYASRVLTPAEQKYSTIEKECLAIVWAVDKWRPYLLGRRFHIETDHKPLQWLQTARD 492
Query: 351 EGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR---QKELP 400
G + ++R E +D ++ H +PGK N AD LSR + ELP
Sbjct: 493 PRGKSARWMIRLQE--YDFSIGH--------VPGKENVMADYLSRPDMEAELP 535
>gi|308452573|ref|XP_003089094.1| hypothetical protein CRE_06222 [Caenorhabditis remanei]
gi|308243277|gb|EFO87229.1| hypothetical protein CRE_06222 [Caenorhabditis remanei]
Length = 1388
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+F +IDL++AY V + P Q+ L + L+ LPFG+ SAP +F ++ +
Sbjct: 572 LNGGNFFTQIDLAEAYLQVEMDPDSQKLLVINTHLGLFTYNRLPFGVKSAPGIFQQIMDT 631
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L V YLDD+++ + +Q + + +E+ ++
Sbjct: 632 MLNGLEG----VSTYLDDIIICGSTIEEHNERVLKVFGRIQEYGFRIKMEKCSFL-MEEI 686
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 687 KFLGFIIN 694
>gi|302853331|ref|XP_002958181.1| hypothetical protein VOLCADRAFT_99387 [Volvox carteri f.
nagariensis]
gi|300256450|gb|EFJ40715.1| hypothetical protein VOLCADRAFT_99387 [Volvox carteri f.
nagariensis]
Length = 701
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 32/177 (18%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+VK+DL+ A++H+PIR + +RF + LY M LP G ++P F+K+ + + R
Sbjct: 73 MVKVDLADAFYHIPIRAADRRFFVFRFCGVLYQMNALPMGWLNSPYWFSKIMRNVVRFWR 132
Query: 171 N--------------------------------LGMRVIVYLDDLLLGNQDSVLLRSQAR 198
+ LG RV+ YLDD L R A+
Sbjct: 133 DPLAAVGGGRRRLSPPLPPHQFFPSDRCARPARLGARVLPYLDDFLFVFASEEQARLGAQ 192
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTL 255
+++ L S + + P Q+ +LGI N +P K + ++R + L
Sbjct: 193 WVRESIEFLGLSCHPTKCQWEPSQSVYHLGITVNTAEGLFEVPAGKLAKLRRLAVGL 249
>gi|38017495|gb|AAR08050.1| polyprotein [Duck hepatitis B virus]
Length = 788
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDEKYMKIEE 574
>gi|82592700|gb|ABB84517.1| polyprotein [Duck hepatitis B virus]
Length = 787
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 561
>gi|308464032|ref|XP_003094286.1| hypothetical protein CRE_11440 [Caenorhabditis remanei]
gi|308248024|gb|EFO91976.1| hypothetical protein CRE_11440 [Caenorhabditis remanei]
Length = 1388
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+F +IDL++AY V + P Q+ L + L+ LPFG+ SAP +F ++ +
Sbjct: 572 LNGGNFFTQIDLAEAYLQVEMDPDSQKLLVINTHLGLFTYNRLPFGVKSAPGIFQQIMDT 631
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L V YLDD+++ + +Q + + +E+ ++
Sbjct: 632 MLNGLEG----VSTYLDDIIICGSTIEEHNERVFKVFGRIQEYGFRIKMEKCSFL-MEEI 686
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 687 KFLGFIIN 694
>gi|1945323|emb|CAA97115.1| TY3B [Saccharomyces cerevisiae]
gi|1945324|emb|CAA97117.1| TY3B [Saccharomyces cerevisiae]
Length = 1547
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 668 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 727
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 728 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 783
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 784 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 841
Query: 256 TQI------------QW---WSVALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 842 SKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGA 901
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 902 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 961
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 962 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAV--- 1010
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1011 -YTITPETSRPI 1021
>gi|410026807|gb|AFV52543.1| DNA polymerase [Duck hepatitis B virus]
Length = 788
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKFMKIEE 574
>gi|326677050|ref|XP_003200740.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1402
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 160/391 (40%), Gaps = 92/391 (23%)
Query: 80 QDLGDRAFLSLKKFHLIN-HFRVP--------DFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R + + + I +R P + L+ + K+DL AY + I+ +H+
Sbjct: 500 KDGGLRPCIDYRGLNAITVKYRYPLPLVPAALELLRTAKYFTKLDLRSAYNLIRIKKNHE 559
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQD 189
+ Y +PFGLA++P VF N + R++ R VIVY+DD+L+ ++
Sbjct: 560 WKTAFSTSSGHYEYLVMPFGLANSPFVFQAFIN---DVFRDMLNRWVIVYIDDILIYSES 616
Query: 190 SVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYL--------GIMWNPTLDSKSLP 241
S RA + L R LE+ QT Y G+ + L
Sbjct: 617 LEEHISHVRAVLQRLIEHRLYAKLEKCEFH--QTSIYFLGYIIGTEGVAMDEQKVQAVLK 674
Query: 242 LEKQSTI---QRY--------------------LLTLTQ-----IQWWSVA-------LH 266
K TI QR+ L +LT+ I+W A H
Sbjct: 675 WPKPRTIKELQRFLGFANFYRRFIRNFSLVASPLTSLTRGKGSIIKWNDTAERAFAKLKH 734
Query: 267 R--SSPIF----PQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDH------------QEM 308
R ++PI P+ P V DASN+G GAI+ G H ++
Sbjct: 735 RFATAPILHHPNPELP-FIVEIDASNTGIGAILSQKQ-GSPSKSHPCAFFSRKLNSAEQN 792
Query: 309 WHINLKEMFAVRSALER---KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
+ + +E+ A+++A+E L + K +I +D++ + YIH S K L +A
Sbjct: 793 YDVGNRELLAMKAAMEEWRHWLEGAKHKFTVI-TDHKN-LEYIH------SAKRLNPRQA 844
Query: 366 LFDL-AVRHNITLMARYIPGKFNTWADSLSR 395
+ L R + T+ YIPG N AD+LSR
Sbjct: 845 RWALFFTRFDFTVT--YIPGSKNVKADALSR 873
>gi|6321547|ref|NP_011624.1| gag-pol fusion protein [Saccharomyces cerevisiae S288c]
gi|285812302|tpg|DAA08202.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288c]
Length = 1547
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 668 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 727
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 728 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 783
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 784 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 841
Query: 256 TQI------------QW---WSVALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 842 SKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGA 901
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 902 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 961
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 962 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAV--- 1010
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1011 -YTITPETSRPI 1021
>gi|340381502|ref|XP_003389260.1| PREDICTED: hypothetical protein LOC100638994 [Amphimedon
queenslandica]
Length = 804
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
L K DL AY VP+ P+ L +V+ Y CLPFGL SAP++F+ L++ +A
Sbjct: 155 LTKFDLQDAYRIVPVHPADHHRLGIVWEGRTYVDRCLPFGLRSAPKIFSALSDALAWIFA 214
Query: 171 NLGMRVIV-YLDDLLL 185
+ G+ V YLDD L
Sbjct: 215 SFGLVSQVHYLDDFLF 230
>gi|296142307|gb|ADG96108.1| polymerase [Duck hepatitis B virus]
Length = 788
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDEKYMKIEE 574
>gi|134034966|sp|Q99315.3|YG31B_YEAST RecName: Full=Transposon Ty3-G Gag-Pol polyprotein; AltName:
Full=Gag3-Pol3; AltName: Full=Transposon Ty3-1 TYA-TYB
polyprotein; Contains: RecName: Full=Capsid protein;
Short=CA; AltName: Full=p24; Contains: RecName:
Full=Spacer peptide p3; Contains: RecName:
Full=Nucleocapsid protein p11; Short=NC; Contains:
RecName: Full=Ty3 protease; Short=PR; AltName: Full=p16;
Contains: RecName: Full=Spacer peptide J; Contains:
RecName: Full=Reverse transcriptase/ribonuclease H;
Short=RT; Short=RT-RH; AltName: Full=p55; Contains:
RecName: Full=Integrase p61; Short=IN; Contains: RecName:
Full=Integrase p58; Short=IN
Length = 1547
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 668 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 727
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 728 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 783
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 784 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 841
Query: 256 TQI------------QW---WSVALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 842 SKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGA 901
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 902 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 961
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 962 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAV--- 1010
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1011 -YTITPETSRPI 1021
>gi|228423|prf||1803562C pol protein
Length = 837
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 494 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 553
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 554 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 611
>gi|84801|pir||S08405 hypothetical protein 2 - silkworm transposon mag
Length = 1178
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 88 LSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
++L K I+ F VP L F K+DLSQAY + + + + L
Sbjct: 299 VTLNKVLAIDRFPVPKMEDLFSNLSGNKFFTKLDLSQAYNQIVLSERSSEYTVINTHRGL 358
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
+ + L +GLAS+P +F KL + N +N+ V+V+ DD+L+ NQD L S ++
Sbjct: 359 FKYSRLVYGLASSPGIFQKL---MVNMFKNVP-NVVVFYDDILIRNQD---LDSHLKSIK 411
Query: 202 ATLQSL-RWSVNLERSVL-WPVQTCQYLGIM 230
L L R+ + ++RS + V +YLG +
Sbjct: 412 EVLDILERYGLKIKRSKCEFMVTEVRYLGFI 442
>gi|281205563|gb|EFA79753.1| hypothetical protein PPL_07444 [Polysphondylium pallidum PN500]
Length = 1918
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 72/351 (20%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G KIDL Q Y + + + Q + ++ T LPFGL +AP F +L + I
Sbjct: 922 GVLFSKIDLLQGYHQIRVHENDQSKTAFRTSFGVFQYTVLPFGLTNAPACFQRLMDSI-- 979
Query: 168 YLRN-LGMRVIVYLDDLLLGN---------QDS---VLLRSQARAAVATLQSLRWSVNLE 214
+ R+ + +++VYLDDLL+ QD V L +Q + + + + +LE
Sbjct: 980 FQRHVIAKKLLVYLDDLLIKTNIDDEDKHIQDVLEIVDLLNQNKLKIKLTKCIFGQYSLE 1039
Query: 215 -------RSVLWPVQTCQYLGIM-WNPTLDSKSLP------------LEKQSTIQRYLLT 254
+ L P+ + L I W + + L + K S I+ L+
Sbjct: 1040 YLGHIIGHNKLIPIND-KILAIKNWKQPITKRELRGFLGLTNYYRKFIPKLSEIEAPLID 1098
Query: 255 LTQ----IQWWSV----------ALHRSSPIF-PQAPQVF-VSTDASNSGWGAIVDNHSL 298
+T+ +W + + SS +F P F + DASN G G ++ +
Sbjct: 1099 ITRKNKLFKWEDIHTETFNLIKNQISDSSFLFIPDYKLTFHIDCDASNDGIGHVIYQYKD 1158
Query: 299 GGVWSDHQEM--------------WHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTV 344
D++++ +H+ +E+ A++ ALE +L ++I +D+Q +
Sbjct: 1159 NIEQEDNKQIVLYGSKKFNTTERDYHVFEQEVMAIKHALESNYHMLLGYKIVIHTDHQNI 1218
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ +K KL+R ++ +F N TL+ Y G N AD LSR
Sbjct: 1219 LFINNKLNDNTKPKLIRWLQYIFSF----NPTLI--YKKGSDNVIADGLSR 1263
>gi|326671833|ref|XP_003199533.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1159
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 153/399 (38%), Gaps = 94/399 (23%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ F K+DL AY V IR + +
Sbjct: 465 YRGLNDITIKNRYPLPLMSSAFELLQGSGFFTKLDLRNAYHLVRIREGDEWKTAFNTPTG 524
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ +PFGL +AP VF L N + LR++ + V VYLDD+L+ + R
Sbjct: 525 HFEYRVMPFGLTNAPAVFQTLVN---DVLRDMVNKFVFVYLDDILIFSHSLQEHIQHVRQ 581
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + + E+ L+ ++ +LG + + PT DS+
Sbjct: 582 VLQRLLENQLYIKAEK-CLFHTRSVPFLGFIVSAEGIRVDPAKVRAVSNWPTPDSR---- 636
Query: 243 EKQSTIQRYL------------------------LTLTQIQWWS---VALHRSSPIFPQA 275
+QR+L T T QW S A R F A
Sbjct: 637 ---KALQRFLGFSNFYCRFVRNYSQIAASLTALTSTKTPFQWSSQAQAAFERLKTCFSSA 693
Query: 276 P---------QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKE 315
P Q V DAS G GA++ SL G V S + + I +E
Sbjct: 694 PVLSFPDPERQFIVEVDASEVGVGAVLSQRSLADGKVHPCAYFSHRLSPAERNYDIGNRE 753
Query: 316 MFAVRSALERKLPVLQ--DKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-R 372
+ AV+ AL+ L+ + L+ +D++ + Y+ +S K L +A + L R
Sbjct: 754 LLAVKLALDEWRHWLEGTSEPFLVWTDHKN-LEYV------RSAKRLNSRQARWALFFGR 806
Query: 373 HNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQH 411
N L Y PG N D+LSRQ + P L P+ H
Sbjct: 807 FNFIL--SYRPGSKNVKPDALSRQFDGPGDSLTPKPIIH 843
>gi|147845507|emb|CAN80599.1| hypothetical protein VITISV_016761 [Vitis vinifera]
Length = 1404
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 140/360 (38%), Gaps = 67/360 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 650 YRALNKVTVKNKYPIPLIADLFDQLGRAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 709
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL +AP F L N I + YL V+VYLDD+++ + R
Sbjct: 710 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVIYSNTLKEHEEHLRK 766
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLG-------IM-----------WNP---TLDSK 238
L+ V E+ + + +LG +M W+P ++
Sbjct: 767 VFKILRQNELYVKKEKCS-FAKEEVSFLGHRIRDGKLMMDDSKVKAIQEWDPPTKGYSAR 825
Query: 239 SLPLEKQSTIQRYLLTLTQIQWWSVALHRS----------SPI--FPQAPQVF-VSTDAS 285
+ PL LL + W ++ P+ P +VF V TDAS
Sbjct: 826 AAPLTD-------LLKKNKAWEWDERCQQAFENLKKAVTEEPVLALPDHTKVFEVHTDAS 878
Query: 286 NSGWGAIV--DNHSLG---GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSD 340
+ G ++ D H + +D + + + KEM A+ L L ++++D
Sbjct: 879 DFAIGGVLMQDRHPIAFESRKLNDTERRYTVQEKEMTAIIHCLRTWRHYLLGSHFIVKTD 938
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALF-DLAVRHNITLMARYIPGKFNTWADSLSRQKEL 399
N SY + K L +A + D + TL Y PG N A++LSR+ EL
Sbjct: 939 N-IATSYFQTQ------KKLSPKQARWQDFLAEFDYTL--EYKPGSANHVANALSRKVEL 989
>gi|281211438|gb|EFA85602.1| hypothetical protein PPL_01385 [Polysphondylium pallidum PN500]
Length = 1905
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 72/351 (20%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G KIDL Q Y + + + Q + ++ T LPFGL +AP F +L + I
Sbjct: 909 GVLFSKIDLLQGYHQIRVHENDQSKTAFRTSFGVFQYTVLPFGLTNAPACFQRLMDSI-- 966
Query: 168 YLRN-LGMRVIVYLDDLLLGN---------QDS---VLLRSQARAAVATLQSLRWSVNLE 214
+ R+ + +++VYLDDLL+ QD V L +Q + + + + +LE
Sbjct: 967 FQRHVIAKKLLVYLDDLLIKTNIDDEDKHIQDVLEIVDLLNQNKLKIKLTKCIFGQYSLE 1026
Query: 215 -------RSVLWPVQTCQYLGIM-WNPTLDSKSLP------------LEKQSTIQRYLLT 254
+ L P+ + L I W + + L + K S I+ L+
Sbjct: 1027 YLGHIIGHNKLIPIND-KILAIKNWKQPITKRELRGFLGLTNYYRKFIPKLSEIEAPLID 1085
Query: 255 LTQ----IQWWSV----------ALHRSSPIF-PQAPQVF-VSTDASNSGWGAIVDNHSL 298
+T+ +W + + SS +F P F + DASN G G ++ +
Sbjct: 1086 ITRKNKLFKWEDIHTETFNLIKNQISDSSFLFIPDYKLTFHIDCDASNDGIGHVIYQYKD 1145
Query: 299 GGVWSDHQEM--------------WHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTV 344
D++++ +H+ +E+ A++ ALE +L ++I +D+Q +
Sbjct: 1146 NIEQEDNKQIVLYGSKKFNTTERDYHVFEQEVMAIKHALESNYHMLLGYKIVIHTDHQNI 1205
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ +K KL+R ++ +F N TL+ Y G N AD LSR
Sbjct: 1206 LFINNKLNDNTKPKLIRWLQYIFSF----NPTLI--YKKGSDNVIADGLSR 1250
>gi|26800779|emb|CAD29586.1| polymerase [Crane hepatitis B virus]
Length = 786
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGTEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + A LQ L +N ++ PV ++LG +
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCTFLQELGIRINFDKMTPSPVSEIRFLGYI 562
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D + + +E+ I+ R ++ QI W
Sbjct: 563 ----IDEQFMKIEESRWIELRQVIKKIQIGQW 590
>gi|536873|gb|AAA98435.1| POL3 [Saccharomyces cerevisiae]
Length = 1270
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 391 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 450
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 451 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 506
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 507 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 564
Query: 256 TQI------------QWWS---VALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 565 SKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGA 624
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 625 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 684
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 685 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAV--- 733
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 734 -YTITPETSRPI 744
>gi|232018|sp|P30028.1|DPOL_HPBDC RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
gi|325437|gb|AAA45745.1| polymerase [Duck hepatitis B virus]
Length = 787
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVTEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 564 ----IDQKFMKIEE 573
>gi|3218461|emb|CAA06987.1| polymerase [Duck hepatitis B virus]
Length = 788
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASNSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGVRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKFMKIEE 574
>gi|340383987|ref|XP_003390497.1| PREDICTED: uncharacterized protein K02A2.6-like [Amphimedon
queenslandica]
Length = 1319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DL AY VP+ +++ ++ L+ LPFG+ASAP +F ++
Sbjct: 534 LSGGKVFSKLDLKHAYLQVPLDEDSKKYTTINTPKGLFQYERLPFGVASAPSLFQRI--- 590
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N LR+L +V VYLDD+L+ +D+ + + L+S ++ + + V +
Sbjct: 591 MENLLRDLP-QVSVYLDDILVTGRDTSDHLNNLHLVLQRLESAGLTLKKSKCT-FAVPSV 648
Query: 225 QYLG 228
+YLG
Sbjct: 649 EYLG 652
>gi|49247994|ref|YP_031695.1| DNA-directed DNA polymerase [Snow goose hepatitis B virus]
gi|4530333|gb|AAD21980.1| DNA-directed DNA polymerase [Snow goose hepatitis B virus]
Length = 787
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLG 561
>gi|4530343|gb|AAD21990.1| DNA-directed DNA polymerase [Snow goose hepatitis B virus]
Length = 787
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLG 561
>gi|382948098|gb|AFG33164.1| DNA polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 268
>gi|308475019|ref|XP_003099729.1| hypothetical protein CRE_23634 [Caenorhabditis remanei]
gi|308266384|gb|EFP10337.1| hypothetical protein CRE_23634 [Caenorhabditis remanei]
Length = 1538
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 77/345 (22%), Positives = 141/345 (40%), Gaps = 77/345 (22%)
Query: 115 DLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGM 174
DL Y+ +P++ + + L+ LPFGLA++P +F + L LG
Sbjct: 1096 DLLAGYWQLPLKEESKEITAFAIGSELFEWNVLPFGLATSPAIFQAAMECVVGDL--LGT 1153
Query: 175 RVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWS-VNLERSVLWPV-QTCQYLGIMWN 232
V VY+DDLL+ +++ ++ A L+ + S + L+ S W + YLG M
Sbjct: 1154 CVFVYVDDLLIASEN---MKEHAIHVQTILERIEKSGMKLKASKCWIAREEVDYLGHMIT 1210
Query: 233 P----TLDSKSLPLEK----------QSTI------QRYLLTLTQIQW------------ 260
P T ++K ++K QS + + ++++ ++I +
Sbjct: 1211 PEGVKTEEAKVDKMKKFARPEDVKQLQSFLGLVGYYRNFIMSYSKIAYPLNFLTSKKNAW 1270
Query: 261 -WSVALHR----------SSPIFPQA-PQVFVS--------TDASNSGWGAIVDNHSLGG 300
W S+P+ Q P+ +S TDAS G GA++ + G
Sbjct: 1271 VWGTEQENAFVQLKSSVCSAPVLRQPDPETAISGARPYLIYTDASRQGVGAVLAQEANDG 1330
Query: 301 ----------VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK 350
+ + +HI E A+ AL R ++ V++ +D++ ++S +
Sbjct: 1331 EQHPIAFASKSLTSAETRYHITDLEALAMMFALRRFRTIIYGSQVIVFTDHKPLISLM-- 1388
Query: 351 EGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
G + +L+R L + + Y+ GK N AD+LSR
Sbjct: 1389 RGSRLADRLMRWSIELIEFNPK------IVYVKGKANVVADALSR 1427
>gi|4530353|gb|AAD22000.1| DNA-directed DNA polymerase [Snow goose hepatitis B virus]
Length = 787
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLG 561
>gi|45775510|gb|AAS77348.1| polyprotein [Duck hepatitis B virus]
Length = 788
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTDIRFLGNQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDEKYMKIEE 574
>gi|365991279|ref|XP_003672468.1| hypothetical protein NDAI_0K00353 [Naumovozyma dairenensis CBS 421]
gi|343771244|emb|CCD27225.1| hypothetical protein NDAI_0K00353 [Naumovozyma dairenensis CBS 421]
Length = 1249
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 145/337 (43%), Gaps = 65/337 (19%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+DL Y +P+ P+ + V Y T +PFGL +AP FA+ ++A+ R+L
Sbjct: 389 LDLHSGYHQIPMNPTDMDKTAFVTPTGKYEYTVMPFGLVNAPSTFAR---YMADLFRDLE 445
Query: 174 MRVIVYLDDLLLGNQ---------DSVLLRSQARAAVATLQSLRWSVN--------LERS 216
V VYLDD+L+ + D VL R +A + ++ + + R+
Sbjct: 446 F-VNVYLDDILIFSNDLESHWKHIDVVLSRLDQEKLIAKKKKCHFAQSEVQFLGYIIGRN 504
Query: 217 VLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTLTQ------------IQWWS 262
+ PVQ C+ + P T+ + + ++++ ++ + W
Sbjct: 505 KIKPVQEKCEAINRFPVPKTIKEAQRFVGMINYYRKFIKDCSRKVRPLVDFISRNVPWGD 564
Query: 263 V------ALHR---SSPI---FPQAPQVFVSTDASNSGWGAIV----DNHSLGGV----- 301
+ L R S P+ F + + ++TDAS G GA++ DN LG V
Sbjct: 565 LQDDAFATLKRDLMSEPLLVPFKRDAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSK 624
Query: 302 -WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLL 360
++ Q + E+ A+ LE +L K ++++D+ +++S +++ + +
Sbjct: 625 SLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHFVLRTDHISLLSIQNQKEPARRVQRW 684
Query: 361 REVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + FD ++ Y+PG N AD++SR K
Sbjct: 685 LDTLSEFDFSL--------AYLPGPKNVVADAISRAK 713
>gi|326664467|ref|XP_003197819.1| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1299
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G KIDL+ AY V + + L++ L+ LPFG++SAP +F ++
Sbjct: 499 LSGGTIFSKIDLASAYQQVLLEDESKELLTINTHRGLFVYNRLPFGVSSAPSIFQRI--- 555
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N +R+L VIVYLDDLL+ + + +A + LQ V + Q
Sbjct: 556 MENLMRDLD--VIVYLDDLLVTGKTEQEHLQRLQAVLKRLQENGLRVKKSKCEFGKSQI- 612
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 613 EYLGFVLN 620
>gi|336258170|ref|XP_003343904.1| hypothetical protein SMAC_09594 [Sordaria macrospora k-hell]
Length = 585
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 129/318 (40%), Gaps = 38/318 (11%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
+ + K+D+ QA+ + + P H+ + R Y LPFGL P F + N
Sbjct: 197 ISQAKVFTKVDIRQAFHRIRMHPDHEDLTTFRTRYGAYKYKVLPFGLTGGPSSFQRFINE 256
Query: 165 I-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ YL N Y+DD+L+ + D + L+ ++++ + V
Sbjct: 257 VLMGYLDNF---CSAYIDDILIYSNDQEDHDKHVDMVLRRLEEAGLQADIKKCA-FSVTK 312
Query: 224 CQYLGIMWNPTLDSKSLPLEKQSTIQRYLL--TLTQIQWWSVALHRSSPIFPQAPQVFVS 281
++LG + D S+ EK + ++ + + T+ +Q + + ++
Sbjct: 313 TKFLGFIIG--TDGISVDPEKVAAVKEWKVPNTVKSVQEFLGFCNFYRKFIKDFSRIAKP 370
Query: 282 -TDASNSGWGAIVDNHSLGGVWSDHQE--MWH-----------------INLKEMFAVRS 321
T+ + ++H+ GG+ S QE WH ++ KE+ AV
Sbjct: 371 LTNLTKKDLAFKWNDHASGGLMSQLQEDGEWHPVAFYSETMNSAEFNYPVHDKELMAVMK 430
Query: 322 ALERKLPVLQD-KVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMAR 380
+E+ P L+ K I +D+Q + + K + + +R E L + R
Sbjct: 431 GIEQWQPELKGTKPFTIFTDHQALEYFNTKR--VLNGRQVRWSETLSEYQFRMT------ 482
Query: 381 YIPGKFNTWADSLSRQKE 398
Y PGK N AD+LSR+ E
Sbjct: 483 YRPGKDNVAADALSRKLE 500
>gi|382948100|gb|AFG33165.1| DNA polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 268
>gi|382948094|gb|AFG33162.1| DNA polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 268
>gi|26800785|emb|CAD29590.1| polymerase [Crane hepatitis B virus]
Length = 785
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + R
Sbjct: 442 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGTEISR 501
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + A LQ L +N ++ PV ++LG +
Sbjct: 502 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCTFLQELGIRINFDKMTPSPVNEIRFLGYV 561
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D + + +E+ I+ R ++ QI W
Sbjct: 562 ----IDEQFMKIEESRWIELRQVIKKIQIGQW 589
>gi|15150397|gb|AAK85436.1|AF404406_1 polyprotein [Duck hepatitis B virus]
Length = 787
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVTEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 564 ----IDQKFMKIEE 573
>gi|4530338|gb|AAD21985.1| DNA-directed DNA polymerase [Snow goose hepatitis B virus]
Length = 787
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLG 561
>gi|4530348|gb|AAD21995.1| DNA-directed DNA polymerase [Snow goose hepatitis B virus]
Length = 787
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNEIRFLG 561
>gi|382948092|gb|AFG33161.1| DNA polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 268
>gi|147842155|emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]
Length = 1292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + R KIDL Y + IRP + S +D LY + FGL +AP F ++
Sbjct: 619 DMMVRSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLYEWLVMLFGLTNAPSTFMRIM 678
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS------ 216
+ +G V+VY DD+L+ ++ + + TL++ ++ +NL++
Sbjct: 679 TQVLKPF--IGRFVVVYFDDILIYSRSCEDHEEHLKQVMCTLKAEKFYINLKKYPEKIKA 736
Query: 217 -VLWPVQT 223
V WPV T
Sbjct: 737 IVDWPVPT 744
>gi|432912293|ref|XP_004078859.1| PREDICTED: uncharacterized protein LOC101161832 [Oryzias latipes]
Length = 1807
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 74/355 (20%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D +Q K+DL AY V I+ + + Y +PFGL +AP VF +L
Sbjct: 380 DSIQGARIFSKLDLRNAYHLVRIKEGDEWKTAFKTPLGHYEYLVMPFGLTNAPAVFQRLV 439
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR+ L V VYLDD+L+ ++D S R+ + L V E+
Sbjct: 440 N---DVLRDFLNFFVFVYLDDILVYSKDISQHESHVRSVLQRLAENHLFVKAEKCAFH-T 495
Query: 222 QTCQYLGIM------------------WNPTLDSKSLP------------LEKQSTIQRY 251
+ +LG + W P + K L + S+I
Sbjct: 496 TSVPFLGYIFEAGSIRPDPAKIEAVSQWEPPTNRKKLQQFLGFANFYRRFIRNYSSIAAP 555
Query: 252 LLTLTQI----QWWSVA---------LHRSSPIFPQAP---QVFVSTDASNSGWGAIVDN 295
L LT + W + A L S+PI Q Q V DAS+SG G ++
Sbjct: 556 LTQLTSVAKPFSWNATAQSAFDHLKKLFVSAPILIQLDPDRQFIVEVDASDSGVGGVLSQ 615
Query: 296 HSLG-----------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSDNQ 342
+G S + + + +E+ A++ ALE L+ ++ +D++
Sbjct: 616 REVGTNKLKPCAFFSKKLSPAERNYDVGNRELLAIKLALEEWRHWLEGAAHPFIVWTDHK 675
Query: 343 TVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQ 396
++Y+ ++ K L +A + L R N T+ Y PG NT D+LSR+
Sbjct: 676 N-LAYL------RTAKRLNSRQARWCLFFDRFNFTIT--YRPGSRNTKPDALSRK 721
>gi|268571541|ref|XP_002641077.1| Hypothetical protein CBG17454 [Caenorhabditis briggsae]
Length = 1022
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 17/205 (8%)
Query: 53 HTAILLLLCSGRRVHDLTLLLSSRDGFQDLGDRAFL-----SLKKFHLINHFRVPD---- 103
H + LL +G V + ++ S D G + L +L K FR+ D
Sbjct: 262 HEEVGKLLEAGVVVETINPIVCSPLQVADNGKKLRLILDLTALNKGIETPRFRLEDWRAV 321
Query: 104 --FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCLPFGLASAPQV 157
FL++ ++ D Y H+ I L+ D Y T LPFGL+SAP +
Sbjct: 322 WSFLEKANYAATFDFKSGYHHIKIADPSSDLLAFSLSDPPLAPFYKFTALPFGLSSAPWL 381
Query: 158 FAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
F K+ + R G+++ +Y+DD L+ + R L + +V E+S
Sbjct: 382 FTKVFRPLVGRWREKGVKIFLYIDDGLILAKTREEAVEAVRLVREGLAAAGVTVEEEKSF 441
Query: 218 LWPVQTCQYLGIMWNPTLDSKSLPL 242
P + +LGI + L +KS+ L
Sbjct: 442 WTPSEQFTWLGIKCD--LVTKSIRL 464
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 12/184 (6%)
Query: 276 PQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINL-KEMFAVRS--ALERKLPVLQD 332
P ++ TDAS G GA++ N VW E+ ++ KE A+R A+E L++
Sbjct: 567 PTWYLYTDASAEGMGAVLKNSRKETVWQ-ASEIGDVSFRKESSALRELRAVEFATRTLRE 625
Query: 333 KV---VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
++ + I SD+Q VS + K G+ +L + E ++D +V +IP + NT
Sbjct: 626 QIRGAISIHSDSQAAVSVLKK--GSMKLELHKVAERVWD-SVEQIGPARFLWIPREENTE 682
Query: 390 ADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFATANSAAFLVQGGPLKFPDGINPIS 449
AD+ SR+ + DW + + +WG + DLFA+ +A V ++P+ + +
Sbjct: 683 ADAASREFDTDDWGVQNWAFEWAQKRWGHVKCDLFASERNAKHSVYFS--RYPEPTSSGT 740
Query: 450 TSYD 453
++D
Sbjct: 741 DAFD 744
>gi|327262042|ref|XP_003215835.1| PREDICTED: LOW QUALITY PROTEIN: cation-independent
mannose-6-phosphate receptor-like [Anolis carolinensis]
Length = 2641
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 258 IQWWSVALHRSS-----PIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
+QWW+ HR++ P P ++TDAS +GWG N + G W+ + HIN
Sbjct: 2124 LQWWT---HRNNICVGVPFRPSDLSTTITTDASLTGWGTFSGNLATHGHWTSTEITHHIN 2180
Query: 313 LKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTK 355
+ ++ A+ L +L + V + +DN TV+ YI+K+G K
Sbjct: 2181 VLKLLALFKGLRVFQDILSNTTVQVCTDNTTVMWYINKQGDDK 2223
>gi|378788723|gb|AFC40211.1| polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 268
>gi|26800782|emb|CAD29588.1| polymerase [Crane hepatitis B virus]
Length = 785
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + R
Sbjct: 442 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGTEISR 501
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + A LQ L +N ++ PV ++LG +
Sbjct: 502 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCTFLQELGIRINFDKMTPSPVNEIRFLGYV 561
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D + + +E+ I+ R ++ QI W
Sbjct: 562 ----IDEQFMKIEESRWIELRQVIKKIQIGQW 589
>gi|378788725|gb|AFC40212.1| polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 268
>gi|301608924|ref|XP_002934033.1| PREDICTED: hypothetical protein LOC100492780 [Xenopus (Silurana)
tropicalis]
Length = 699
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 138/355 (38%), Gaps = 68/355 (19%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAP---QVFAKLTN 163
RG + K D+ A+ +P+ P L + + CLP G + + ++F+
Sbjct: 298 RGALMAKSDIESAFRLLPVHPDCFHLLGCTFGGYNFVDMCLPMGCSISCYYFELFSTFLE 357
Query: 164 WIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLE-------RS 216
W+ ++ YLDD L +D +++ V T ++ LE R+
Sbjct: 358 WMVAQ-ETACKSLLHYLDDFLFVAED----KTEGPVTVITFLGIQIDDKLEALSRLIDRA 412
Query: 217 V------LWPVQTCQYLGIMWNPTLDSKSLPLEK-------QSTI--------------- 248
V L VQT LG M K +P+ + +T+
Sbjct: 413 VTARKLTLKQVQT--LLGHM---VFACKVMPMGRAFCRRLSMATVGVKAPHHYIRISKNH 467
Query: 249 -------QRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNS-GWGAIVDNHSLGG 300
Q +L + W A S P + + TDA++S G GA
Sbjct: 468 REDLMLWQSFLAEYNGMTCWQAAAVDS-------PDIELFTDAASSVGLGAFFQGEWCAE 520
Query: 301 VWSDHQE----MWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKS 356
W E + ++ E+F + A L ++ V DNQ+VV I+++ + S
Sbjct: 521 RWPKTWEGSDLLRNLTFLELFPILVASFLWGESLSNRRVTFWCDNQSVVHVINRQT-SSS 579
Query: 357 FKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQH 411
+L + AL +R NI A+++PG N+ ADSLSR + + W L P +Q
Sbjct: 580 PPVLELLRALVLQCLRLNIWFKAQHVPGVKNSIADSLSRFQFMEFWRLAPNASQR 634
>gi|326675162|ref|XP_003200292.1| PREDICTED: uncharacterized protein K02A2.6 [Danio rerio]
Length = 1299
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G KIDL+ AY V + + L++ L+ LPFG++SAP +F ++
Sbjct: 499 LSGGTIFSKIDLASAYQQVLLEDESKELLTINTHRGLFVYNRLPFGVSSAPSIFQRI--- 555
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N +R+L VIVYLDDLL+ + + +A + LQ V + Q
Sbjct: 556 MENLMRDLD--VIVYLDDLLVTGKTEQEHLQRLQAVLKRLQENGLRVKKSKCEFGKSQI- 612
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 613 EYLGFVLN 620
>gi|125835738|ref|XP_001337220.1| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1299
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G KIDL+ AY V + + L++ L+ LPFG++SAP +F ++
Sbjct: 499 LSGGTIFSKIDLASAYQQVLLEDESKELLTINTHRGLFVYNRLPFGVSSAPSIFQRI--- 555
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N +R+L VIVYLDDLL+ + + +A + LQ V + Q
Sbjct: 556 MENLMRDLD--VIVYLDDLLVTGKTEQEHLQRLQAVLKRLQENGLRVKKSKCEFGKSQI- 612
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 613 EYLGFVLN 620
>gi|31506005|gb|AAP47822.1| polymerase [Duck hepatitis B virus]
Length = 786
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|365984457|ref|XP_003669061.1| hypothetical protein NDAI_0C01570 [Naumovozyma dairenensis CBS 421]
gi|343767829|emb|CCD23818.1| hypothetical protein NDAI_0C01570 [Naumovozyma dairenensis CBS 421]
Length = 1247
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 145/337 (43%), Gaps = 65/337 (19%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+DL Y +P+ P+ + V Y T +PFGL +AP FA+ ++A+ R+L
Sbjct: 389 LDLHSGYHQIPMNPTDMDKTAFVTPTGKYEYTVMPFGLVNAPSTFAR---YMADLFRDLE 445
Query: 174 MRVIVYLDDLLLGNQ---------DSVLLRSQARAAVATLQSLRWSVN--------LERS 216
V VYLDD+L+ + D VL R +A + ++ + + R+
Sbjct: 446 F-VNVYLDDILIFSNDLESHWKHIDVVLSRLDQEKLIAKKKKCHFAQSEVQFLGYIIGRN 504
Query: 217 VLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTLTQ------------IQWWS 262
+ PVQ C+ + P T+ + + ++++ ++ + W
Sbjct: 505 KIKPVQEKCEAINRFPVPKTIKEAQRFVGMINYYRKFIKDCSRKVRPLVDFISRNVPWGD 564
Query: 263 V------ALHR---SSPI---FPQAPQVFVSTDASNSGWGAIV----DNHSLGGV----- 301
+ L R S P+ F + + ++TDAS G GA++ DN LG V
Sbjct: 565 LQDDAFATLKRDLMSEPLLVPFKRDAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSK 624
Query: 302 -WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLL 360
++ Q + E+ A+ LE +L K ++++D+ +++S +++ + +
Sbjct: 625 SLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHFVLRTDHISLLSIQNQKEPARRVQRW 684
Query: 361 REVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + FD ++ Y+PG N AD++SR K
Sbjct: 685 LDTLSEFDFSL--------AYLPGPKNVVADAISRAK 713
>gi|20136727|gb|AAM11780.1|AF493986_1 polymerase [Duck hepatitis B virus]
Length = 786
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|22415757|gb|AAM94957.1| reverse transcriptase [Volvox carteri f. nagariensis]
Length = 829
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 3/174 (1%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
FL + VP +L D+L D Y+ + + +L++ +R
Sbjct: 279 CFLRYRPVKYERLAEVPSYLLPEDWLYTTDDKSGYWQLSLHEREHTYLAMRWRGQTLFWP 338
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
LPFGLA A ++ + + LR LG+R+ +DD + + Q A V L
Sbjct: 339 HLPFGLAPACHLYTSMKLEVFRPLRQLGVRMSFLIDDQMGAAGSKAAAQFQCGAVVRLLA 398
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQ 259
+L ++++L + L P + ++LG+ + + +P +K + R+ LTQ++
Sbjct: 399 ALGFTLSLSKCQLIPRRRVRFLGMEVDAEAQAFRVPDDK---LARFRALLTQLE 449
>gi|382948096|gb|AFG33163.1| DNA polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 268
>gi|365984847|ref|XP_003669256.1| hypothetical protein NDAI_0C03530 [Naumovozyma dairenensis CBS 421]
gi|343768024|emb|CCD24013.1| hypothetical protein NDAI_0C03530 [Naumovozyma dairenensis CBS 421]
Length = 1263
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 145/337 (43%), Gaps = 65/337 (19%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+DL Y +P+ P+ + V Y T +PFGL +AP FA+ ++A+ R+L
Sbjct: 389 LDLHSGYHQIPMNPTDMDKTAFVTPTGKYEYTVMPFGLVNAPSTFAR---YMADLFRDLE 445
Query: 174 MRVIVYLDDLLLGNQ---------DSVLLRSQARAAVATLQSLRWSVN--------LERS 216
V VYLDD+L+ + D VL R +A + ++ + + R+
Sbjct: 446 F-VNVYLDDILIFSNDLESHWKHIDVVLSRLDQEKLIAKKKKCHFAQSEVQFLGYIIGRN 504
Query: 217 VLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTLTQ------------IQWWS 262
+ PVQ C+ + P T+ + + ++++ ++ + W
Sbjct: 505 KIKPVQEKCEAINRFPVPKTIKEAQRFVGMINYYRKFIKDCSRKVRPLVDFISRNVPWGD 564
Query: 263 V------ALHR---SSPI---FPQAPQVFVSTDASNSGWGAIV----DNHSLGGV----- 301
+ L R S P+ F + + ++TDAS G GA++ DN LG V
Sbjct: 565 LQDDAFATLKRDLMSEPLLVPFKRDAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSK 624
Query: 302 -WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLL 360
++ Q + E+ A+ LE +L K ++++D+ +++S +++ + +
Sbjct: 625 SLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHFVLRTDHISLLSIQNQKEPARRVQRW 684
Query: 361 REVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + FD ++ Y+PG N AD++SR K
Sbjct: 685 LDTLSEFDFSL--------AYLPGPKNVVADAISRAK 713
>gi|254587271|emb|CAX83692.1| Gap-Pol polyprotein [Schistosoma japonicum]
Length = 1350
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F K+DL+ AY V + P+ + L++ L+ T LPFG+ +AP +F +L +
Sbjct: 569 LNGGSFFAKLDLADAYLQVEVEPTCRELLTINTHRGLFQYTRLPFGVKTAPAIFQQLMDT 628
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I L V VYLDD+L+ + L ++ + ++ + + E+ + + +
Sbjct: 629 ILLDLTG----VAVYLDDILVVAESPNELYNRLATVLKQIEDHGFHLRPEKCQFY-LTSV 683
Query: 225 QYLGIMWNPT 234
+YLG +++ +
Sbjct: 684 KYLGFIFDKS 693
>gi|189536989|ref|XP_001338057.2| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 88 LSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
L++ + + + +P L G K+D+S AY + + S +++++V L
Sbjct: 423 LTVNRASSVEQYPIPKVEDLFTQLAGGQKFSKLDMSHAYQQIMLDESAKKYVTVNTHKGL 482
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL-GNQDSVLLRSQARAA 200
Y LPFG+AS+P +F + I L++ V+VYLDD+L+ G D LR+
Sbjct: 483 YTYCRLPFGVASSPAIFQRTMEGILQNLKH----VVVYLDDILVTGANDEEHLRNLEE-- 536
Query: 201 VATLQSLRWS-VNLERSVLWPVQTCQYLG 228
L+ L+ S + L+RS C++LG
Sbjct: 537 --VLRRLKSSGLRLKRS------KCEFLG 557
>gi|325428|gb|AAA62819.1| polymerase [Duck hepatitis B virus]
Length = 786
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|33088067|gb|AAP82857.1| polymerase [Duck hepatitis B virus]
gi|33088071|gb|AAP82860.1| polymerase [Duck hepatitis B virus]
Length = 786
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|33088059|gb|AAP82851.1| polymerase [Duck hepatitis B virus]
gi|33088063|gb|AAP82854.1| polymerase [Duck hepatitis B virus]
Length = 786
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|28629158|gb|AAO49486.1|AF505512_1 polymerase [Duck hepatitis B virus]
Length = 786
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|118863|sp|P17193.1|DPOL_HPBDW RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
gi|325446|gb|AAA45751.1| P protein [Duck hepatitis B virus]
Length = 788
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKFMRIEE 574
>gi|311036249|gb|ADP55738.1| polymerase [Duck hepatitis B virus]
Length = 786
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 560
>gi|378788719|gb|AFC40209.1| polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 268
>gi|31415506|gb|AAP44980.1| DNA polymerase [Duck hepatitis B virus]
Length = 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 493 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 552
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 553 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 610
>gi|326680534|ref|XP_003201542.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1673
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 94/392 (23%)
Query: 80 QDLGDRAFLSLKKFHLIN-HFRVP--------DFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R + + + I +R P + L+ + K+DL AY + I+ +H+
Sbjct: 449 KDGGLRPCIDYRGLNAITVKYRYPLPLVPAALELLRTAKYFTKLDLRSAYNLIRIKKNHE 508
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQD 189
+ Y +PFGLA++P VF N + R++ R VIVY+DD+L+ ++
Sbjct: 509 WKTAFSTSSGHYEYLVMPFGLANSPSVFQAFIN---DVFRDMLNRWVIVYIDDILIYSES 565
Query: 190 SVLLRSQARAAVATLQSLRWSVNLERS-----------------------------VLWP 220
S RA + L R LE+ + WP
Sbjct: 566 LEEHISHVRAVLQRLIEHRLYAKLEKCEFHQTSISFLGYIIGTEGVAMDEQKVQAVLKWP 625
Query: 221 ----VQTCQ--------YLGIMWNPTLDSKSLP---------LEKQSTIQRYLLTLTQIQ 259
++ Q Y + N +L + L ++ T +R L
Sbjct: 626 KPRTIKELQRFLGFANFYRRFIRNFSLVASPLTSLTRGKGSIIKGNDTAERAFAKLKHRF 685
Query: 260 WWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDH------------QE 307
+ LH +P P V DASN+G GAI+ G H ++
Sbjct: 686 ATAPILHHPNPELP----FIVEIDASNTGIGAILSQKQ-GSPSKSHPCAFFSRKLNSAEQ 740
Query: 308 MWHINLKEMFAVRSALER---KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVE 364
+ + +E+ A+++A+E L + K +I +D++ + YIH S K L +
Sbjct: 741 NYDVGNRELLAMKAAMEEWRHWLEGAKHKFTVI-TDHKN-LEYIH------SAKRLNPRQ 792
Query: 365 ALFDL-AVRHNITLMARYIPGKFNTWADSLSR 395
A + L R + T+ YIPG N AD+LSR
Sbjct: 793 ARWALFFTRFDFTVT--YIPGSKNVKADALSR 822
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ +DL AY V I + + R + LPFG+ +AP VF L
Sbjct: 1479 ELLQGAQVFTMLDLHNAYHLVRILEGDEWKRAFNTRTGHFEFLVLPFGVTNAPAVFQDLV 1538
Query: 163 NWIANYLRNLGMR-VIVYLDDLLL 185
N + LR++ + V VYLDD+L+
Sbjct: 1539 N---DMLRDMVNKFVFVYLDDILI 1559
>gi|326664020|ref|XP_003197713.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1459
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 160/400 (40%), Gaps = 107/400 (26%)
Query: 80 QDLGDRAFLSLKKFHLIN-HFRVP--------DFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R + + + I +R P + L+ + K+DL AY + I+ +H+
Sbjct: 546 KDGGLRPCIDYRGLNAITVKYRYPLPLVPAALELLRTAKYFTKLDLRSAYNLIRIKKNHE 605
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQD 189
+ Y +PFGLA++P VF N + R++ R VIVY+DD+L+ ++
Sbjct: 606 WKTAFSTSSGHYEYLVMPFGLANSPSVFQAFIN---DVFRDMLNRWVIVYIDDILIYSES 662
Query: 190 SVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQST-- 247
S RA + L R LE+ + +LG + + ++ + +++Q
Sbjct: 663 LEEHISHVRAVLQRLIEHRLYAKLEKCEFHQT-SISFLGYI----IGTEGVAMDEQKVQA 717
Query: 248 ------------IQRY--------------------LLTLTQ-----IQWWSVA------ 264
+QR+ L +LT+ I+W A
Sbjct: 718 VLKWPKPRTIKELQRFLGFANFYRRFIQNFSLVASPLTSLTRGKGSIIKWNDTAERAFAK 777
Query: 265 -------------LHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDH------ 305
LH +P P V DASN+G GAI+ G H
Sbjct: 778 KYRLKYRFATAPILHHPNPELP----FIVEIDASNTGIGAILSQKQ-GSPSKSHPCAFFS 832
Query: 306 ------QEMWHINLKEMFAVRSALER---KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKS 356
++ + + +E+ A+++A+E L + K +I +D++ + YIH S
Sbjct: 833 RKLNSAEQNYDVGNRELLAMKAAMEEWRHWLEGAKHKFTVI-TDHKN-LEYIH------S 884
Query: 357 FKLLREVEALFDL-AVRHNITLMARYIPGKFNTWADSLSR 395
K L +A + L R + T+ YIPG N AD+LSR
Sbjct: 885 AKRLNPRQARWALFFTRFDFTVT--YIPGSKNVKADALSR 922
>gi|378788721|gb|AFC40210.1| polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 268
>gi|31415504|gb|AAP44979.1| DNA polymerase [Duck hepatitis B virus]
Length = 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 493 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 552
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 553 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 610
>gi|28195287|gb|AAO27306.1| TyB3p [Saccharomyces paradoxus]
Length = 1255
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/411 (23%), Positives = 174/411 (42%), Gaps = 95/411 (23%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHF---RVPDFLQR---GDFLVKIDLSQAYFHV 123
+L+ +DG F+ D + +L K + + F R+ + L R +DL Y +
Sbjct: 360 VLVPKKDGTFRLCVD--YRALNKVTISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 417
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
P+ P + + V Y T +PFGL +AP FA+ ++A+ R+L V VYLDD+
Sbjct: 418 PMDPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADIFRDLRF-VNVYLDDI 473
Query: 184 LLGNQ---------DSVLLR----------SQARAAVATLQSLRWSVNLERSVLWPVQ-T 223
L+ ++ D+VL R + + A ++ L +++ +++ + P+Q
Sbjct: 474 LIFSESQEEHWKHLDTVLGRLKKENLIVKKKKCKFASEQIEFLGYNIGIQK--ITPLQHK 531
Query: 224 C----------------QYLGIM-----WNPTLDSKSLPLEKQSTIQRYLLTLTQ----- 257
C ++LG++ + P + P IQ ++ +Q
Sbjct: 532 CAAIRDFPKPRTVKQAQRFLGMINYYRRFIPNCSKIAQP------IQLFICDKSQWTEEQ 585
Query: 258 ---IQWWSVALHRSSPIFPQAPQVF--VSTDASNSGWGAIVD-----NHSLG--GVWSDH 305
I+ AL S + P + ++TDAS G GA+++ N +G G +S
Sbjct: 586 DKAIEKLKFALCNSPVLVPFNNKAIYRLTTDASKDGIGAVLEEVNAKNALVGVVGYFSKS 645
Query: 306 QEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLR 361
E N E+ + AL +L K +++D+ +++S +K + R
Sbjct: 646 LESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKN------EPAR 699
Query: 362 EVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHI 412
V+ D +N TL Y+ G N AD++SR + + PE+ Q I
Sbjct: 700 RVQRWLDDLATYNFTL--EYLAGPKNVVADAISRAV----YTITPEIPQPI 744
>gi|378788717|gb|AFC40208.1| polymerase, partial [Duck hepatitis B virus]
Length = 292
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 151 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 210
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 211 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 268
>gi|326668112|ref|XP_003198741.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1136
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 153/392 (39%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR +R D Y +PFGLA++P VF N
Sbjct: 291 LRSAQYFTKLDLRSAYNLIRIRQGDERKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 350
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA L ++ + + S QTC
Sbjct: 351 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAMPKRL--IKNQLYAKSSKCEFHQTC 406
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 407 ISFLGYIISPEGMAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 466
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 467 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 526
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 527 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 586
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 587 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEI 639
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ QW + + L A N+ +
Sbjct: 640 PDEPIIKSPLIVAPIQWDIDQEILQAAENNPS 671
>gi|2982231|gb|AAC06354.1| DNA polymerase [Duck hepatitis B virus]
Length = 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 493 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 552
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 553 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 610
>gi|1706510|sp|P03162.2|DPOL_DHBV1 RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
gi|325433|gb|AAA45742.1| DNA polymerase (putative; gene 6); putative [Duck hepatitis B
virus]
Length = 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 493 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 552
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 553 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 610
>gi|147861248|emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
Length = 1521
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D +V KIDL Y + IRP + S +D LY
Sbjct: 681 AINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLY 740
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+PFGL +AP F ++ + +G V+VY DD+L+ ++ + +
Sbjct: 741 EWLVMPFGLTNAPSTFMRIMTQVLKPF--IGRFVVVYFDDILIYSRSCEDHEEHLKQVMR 798
Query: 203 TLQSLRWSVNLERSVL 218
TL++ ++ +NL++
Sbjct: 799 TLRAEKFYINLKKCTF 814
>gi|326664810|ref|XP_003197890.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1486
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 580 LQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 637
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 638 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 693
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 694 QSVQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIHNFSQLA 751
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 752 APLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 811
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G V S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 812 SQRSASDGKVHPCAYFSHRLSSAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 871
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI KS K L +A + L R N T+ Y PG N D+LSR
Sbjct: 872 HKN-LEYI------KSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSR 918
>gi|372220276|ref|YP_004956864.1| unnamed protein product [Parrot hepatitis B virus]
gi|364506331|gb|AEW50169.1| polymerase [Parrot hepatitis B virus]
Length = 795
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G + +DLSQA++H+P+ P+ L++ +++Y P G+ +P + I +
Sbjct: 448 GMHRISLDLSQAFYHIPLNPASGSRLAISDGESVYYFRKTPMGVGISPFFLHLFSAAIGS 507
Query: 168 YL-RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQY 226
+ R + Y+DD LL + ++ L + + A LQ +N ++ PV T ++
Sbjct: 508 EISRRFNIWTFTYMDDFLLCHPNARHLNAVSHAVCTFLQEFGIRINFDKMTPSPVTTIRF 567
Query: 227 LGIMWN 232
LG N
Sbjct: 568 LGYEIN 573
>gi|340380841|ref|XP_003388930.1| PREDICTED: uncharacterized protein K02A2.6-like [Amphimedon
queenslandica]
Length = 1148
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DL AY +P+ + ++F ++ L+ LPFG++SAP +F +
Sbjct: 382 LAGGKIFSKLDLKHAYLQIPLDEASKKFTTINTPKGLFQYERLPFGVSSAPSLFQRT--- 438
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I N L +L V VY+DD+L+ D + A + TL+ ++ + + V +
Sbjct: 439 IENLLSHL-QHVCVYIDDILVTGTDDADHLNNLHAVLQTLEEAGLTLK-QSKCKFGVPSV 496
Query: 225 QYLG 228
+YLG
Sbjct: 497 EYLG 500
>gi|340368029|ref|XP_003382555.1| PREDICTED: uncharacterized protein K02A2.6-like [Amphimedon
queenslandica]
Length = 1573
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DL AY +P+ + ++F ++ L+ LPFG++SAP +F +
Sbjct: 470 LAGGKIFSKLDLKHAYLQIPLDEASKKFTTINTPKGLFQYERLPFGVSSAPSLFQRT--- 526
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I N L +L V VY+DD+L+ D + A + TL+ ++ + + V +
Sbjct: 527 IENLLSHL-QHVCVYIDDILVTGTDDADHLNNLHAVLQTLEEAGLTLK-QSKCKFGVPSV 584
Query: 225 QYLG 228
+YLG
Sbjct: 585 EYLG 588
>gi|172044504|sp|P0C691.1|DPOL_DHBV3 RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
Length = 786
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 560
>gi|315360731|gb|ADU05359.1| polymerase [Duck hepatitis B virus]
Length = 786
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 560
>gi|291236625|ref|XP_002738239.1| PREDICTED: polyprotein-like, partial [Saccoglossus kowalevskii]
Length = 861
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 79 FQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYR 138
+L D+ S+ + + F L G + K D++ A+ +P+ PS + +
Sbjct: 604 LNELIDKETFSMSYIRIDDAFEELKRLGAGAHMNKFDITDAFKQIPLHPSIWHLHGIKWD 663
Query: 139 DTLYCMTCLPFGLASAPQVFAKLTN---WIANYLRNLGMRVIVY-LDDLLLGNQ-DSVLL 193
Y L FG S+P++F KL+ WIA Y ++ I++ LDD L +Q + L
Sbjct: 664 GRYYFFARLVFGSRSSPKIFDKLSQAICWIAEY--KFDVKFILHLLDDFLTIDQFEETAL 721
Query: 194 RSQARAAVATLQSLRWSVNL---ERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR 250
RS ++ + L S+N+ L P Q +YLGIM N LP K+ I
Sbjct: 722 RS-----MSVMTMLFKSLNIPLAAHKTLGPTQELEYLGIMLNSRDLQAFLPTNKKERITT 776
Query: 251 YLLTLT 256
+ T
Sbjct: 777 IISEFT 782
>gi|340382146|ref|XP_003389582.1| PREDICTED: uncharacterized protein K02A2.6-like [Amphimedon
queenslandica]
Length = 982
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DL AY +P+ + ++F ++ L+ LPFG++SAP +F +
Sbjct: 205 LAGGKIFSKLDLKHAYLQIPLDEASKKFTTINTPKGLFQYERLPFGVSSAPSLFQRT--- 261
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I N L +L V VY+DD+L+ D + A + TL+ ++ + + V +
Sbjct: 262 IENLLSHL-QHVCVYIDDILVTGTDDADHLNNLHAVLQTLEEAGLTLK-QSKCKFGVPSV 319
Query: 225 QYLG 228
+YLG
Sbjct: 320 EYLG 323
>gi|147810220|emb|CAN78060.1| hypothetical protein VITISV_003931 [Vitis vinifera]
Length = 1037
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 128/325 (39%), Gaps = 43/325 (13%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L R + K+DL Y+ V I + + V R Y +PFGL +AP F L
Sbjct: 229 DQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCTLM 288
Query: 163 NWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N I + YL L V+VYLDD+++ + R L+ V E+ +
Sbjct: 289 NKIFHPYLDKL---VVVYLDDIVIYSNTLKEHEEHLRKVFKILRQNELYVKKEKCS-FAK 344
Query: 222 QTCQYLG-------IMWNPTLDSKSL------PLEKQSTIQRYLLTLTQIQWWSVALH-- 266
+ +LG +M + DSK P K ++ +L + + A
Sbjct: 345 EEVSFLGHRIRDGKLMMD---DSKVKAIQEWDPPTKVPQLRSFLGLVNYYRRCQQAFEDL 401
Query: 267 ----RSSPI--FPQAPQVF-VSTDASNSGWGAIV--DNHSLG---GVWSDHQEMWHINLK 314
P+ P +VF V TDAS+ G ++ + H + +D + + + K
Sbjct: 402 KKAVTEEPVLALPDHTKVFEVHTDASDFAIGGVLMQERHPIAFESRKLNDAERRYTVQEK 461
Query: 315 EMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHN 374
EM + L L ++++DN SY + KL + D +
Sbjct: 462 EMTVIVHCLRTWRHYLLGSHFIVKTDN-VATSYFQTQK-----KLSPQQARWQDFLAEFD 515
Query: 375 ITLMARYIPGKFNTWADSLSRQKEL 399
TL Y PG N AD+LSR+ EL
Sbjct: 516 STL--EYKPGSPNHVADALSRKAEL 538
>gi|326678715|ref|XP_003201148.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1361
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 153/375 (40%), Gaps = 79/375 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P D LQ F K+DL AY V +R + +
Sbjct: 448 YRGLNDITIKNRYPLPLMSSAFDLLQGARFFTKLDLRNAYHLVRMREGDEWKTAFNTPTG 507
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + R
Sbjct: 508 HFEYLVLPFGLTNAPAVFQALVN---DVLRDMINQFVFVYLDDILIFSSTMQEHVQHVRR 564
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT---LDSKSL-------PLEKQSTIQ 249
+ L + V E+ + VQ+ +LG + + +D + P + + +Q
Sbjct: 565 VLQRLLENQLYVKAEK-CKFHVQSVSFLGHIISVEGLRMDPAKVRAVSDWPPPDSRKALQ 623
Query: 250 RYL----------------------LTLTQIQW-WSVA----------LHRSSPIF---P 273
R+L LT T+I++ WSVA L S+PI
Sbjct: 624 RFLGFANFYRRFIRNFGRVAAPLTALTSTRIRFGWSVAAQTAFDHLKSLFTSAPILITPD 683
Query: 274 QAPQVFVSTDASNSGWGAIV-----DNHSLGGVWSDH-----QEMWHINLKEMFAVRSAL 323
A Q V DAS G GA++ DN + H + + + +E+ AVR AL
Sbjct: 684 PARQFVVEVDASEVGVGAVLSQTAQDNKLHPCAYFSHCLSPTERNYDVGNRELLAVRLAL 743
Query: 324 ERKLPVLQDKVV--LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMAR 380
L+ V L+ +D++ + YI ++ K L +A + L R N TL
Sbjct: 744 GEWRHWLEGAAVPFLVWTDHRN-LQYI------QTAKRLNARQARWALFFGRFNFTLS-- 794
Query: 381 YIPGKFNTWADSLSR 395
Y PG N+ D+LSR
Sbjct: 795 YRPGSKNSKPDALSR 809
>gi|326677789|ref|XP_003200913.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1465
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 152/386 (39%), Gaps = 82/386 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY V I+ + ++ Y +PFGL +AP VF
Sbjct: 618 EILQGATIFTKLDLRNAYHLVRIKEGDEWKTALNTPTGHYEYQVMPFGLVNAPAVFQAFI 677
Query: 163 NWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR + R V VYLDD+L+ + R ++ L R V LE+S V
Sbjct: 678 N---DVLRKMLNRLVFVYLDDILIFSSSCEEHVQHVRQVLSQLLRHRLFVKLEKSEFH-V 733
Query: 222 QTCQYLGIMWNPT---LDSKSL------PLEKQ-STIQRYL------------------- 252
+LG + + +D + P + +QR+L
Sbjct: 734 SKVLFLGFIVSKCSLQMDPGKIKAVLDWPQPRSVKEVQRFLGFANFYRRFIRGFSSIAEP 793
Query: 253 ------LTLTQIQWWSVA---------LHRSSPIF----PQAPQVFVSTDASNSGWGAIV 293
T W +A L S+PIF P+ P V V DAS+ G GA++
Sbjct: 794 LTALTKKTAKSFVWTEMANKAFNRLKSLFTSAPIFALPDPELPFV-VEVDASDIGIGAVL 852
Query: 294 DNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSD 340
S L + Q + I +E+ AV+ ALE L+ LI +D
Sbjct: 853 SQRSKTDNKLHPCAYLSHRLTPAQRNYDIGKRELLAVKVALEEWRHWLEGAKHPFLIWTD 912
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL 399
++ ++YI + K L +A + L R + TL Y PG N+ D+LSRQ
Sbjct: 913 HKN-LTYI------REAKRLNSRQARWALFFNRFDFTLS--YRPGSKNSKPDALSRQFGS 963
Query: 400 PDWHLLPEV---TQHIFA--QWGVPE 420
D PE+ T + QWG+ E
Sbjct: 964 LDSETTPELILPTSRVVGAIQWGIEE 989
>gi|308471499|ref|XP_003097980.1| hypothetical protein CRE_10442 [Caenorhabditis remanei]
gi|308269548|gb|EFP13501.1| hypothetical protein CRE_10442 [Caenorhabditis remanei]
Length = 876
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+F +IDL++A+ V + P Q+ L + L+ LPFG+ SAP +F ++ +
Sbjct: 105 LNGGNFFTQIDLAEAHLQVEMDPDSQKLLVINTHLGLFTYNRLPFGVKSAPGIFQQIMDT 164
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L V YLDD+++ + +Q + + +E+ ++
Sbjct: 165 MLNGLEG----VSTYLDDIIICGSTIEEHNERVFKVFGRIQEYGFRIKMEKCSFL-MEEI 219
Query: 225 QYLGIMWN 232
++LG + N
Sbjct: 220 KFLGFIIN 227
>gi|301613474|ref|XP_002936224.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1086
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + IR + + RD
Sbjct: 233 YRGLNKITVKNRYPLPLISELFDRVKSATIFSKLDLRGAYNLIRIREGDEWKTAFNTRDG 292
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N I L LG V+VYLDD+L+ + R+ +
Sbjct: 293 HYEYLVMPFGLCNAPAVFQELVNDIFRDL--LGRSVVVYLDDILIYSNSLSDHRAHVQEV 350
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
++ L+ +E+ + + V + +LG +
Sbjct: 351 LSRLRQHHLYAKIEKCI-FEVSSVHFLGYI 379
>gi|326674110|ref|XP_003200072.1| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1299
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G +IDL+ AY V + + L++ L+ LPFG++SAP +F ++
Sbjct: 499 LSGGTMFSRIDLASAYQQVLLEDESKELLTINTHRGLFVYNRLPFGVSSAPSIFQRI--- 555
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N +R+L VIVYLDDLL+ + + +A + LQ V + Q
Sbjct: 556 MENLMRDLD--VIVYLDDLLVTGKTEQEHLQRLQAVLKRLQENGLRVKKSKCEFGKSQI- 612
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 613 EYLGFVLN 620
>gi|301608376|ref|XP_002933764.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1076
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + IR + + RD
Sbjct: 244 YRGLNKITVKNRYPLPLISELFDRVKGATVFSKLDLRGAYNLIRIREGDEWKTAFNTRDG 303
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N I L LG V+VYLDD+L+ + + R+ +
Sbjct: 304 HYEYLVMPFGLCNAPAVFQELVNDIFRDL--LGRTVVVYLDDILIYSNNLSDHRAHVQEV 361
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ L+ +E+ V + V + +LG +
Sbjct: 362 LLRLRQNHLYAKIEKCV-FEVSSVHFLGYI 390
>gi|301617641|ref|XP_002938255.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1213
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 156/390 (40%), Gaps = 80/390 (20%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL +AY + I+ + + RD
Sbjct: 483 YRGLNKITVKNRYPLPLISELFDRVKGASIFTKLDLRRAYNLIRIKEGDEWKTAFNTRDG 542
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF + N I L LG V+VYLDD+L+ + + R
Sbjct: 543 HYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGRHVVVYLDDILIYSSNLEDHRCHVLEV 600
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG-IMWNPTLDSKSLPLE---------KQSTIQR 250
+ L+ LE+ + + V + +LG I+ + L+ + +E IQR
Sbjct: 601 LLRLRQHHLYAKLEKCI-FEVPSVHFLGYIISHQGLEMEPTKVEGILNWAQPLSLRAIQR 659
Query: 251 YL----------------------LTLTQIQ---WWSVALHR---------SSPIF--PQ 274
+L LT + W S A+ S+P+ P
Sbjct: 660 FLGFANYYRQFVKGFSSLVAPITALTKKGVDPSIWSSEAIKAFKLLKEAFISAPVLLHPD 719
Query: 275 APQVF-VSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRSA 322
+ F V DAS G GA++ +S + + I KE+ AV+ A
Sbjct: 720 STLPFLVEVDASEVGAGAVLSQRHPVTCKVHPCAFFSRKFSPTEANYDIGNKELLAVKWA 779
Query: 323 LERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDL-AVRHNITLMA 379
E +L+ V + +D++ ++ YI +S K L +A + L R N L
Sbjct: 780 FEEWKHLLEGAKHPVTVFTDHKNLL-YI------ESAKRLNPRQARWALFFTRFNFILT- 831
Query: 380 RYIPGKFNTWADSLSRQ-KELPDWHLLPEV 408
Y PG N AD+LSR P HL P+
Sbjct: 832 -YRPGSKNIKADALSRSFVSCPKEHLEPDT 860
>gi|17932882|emb|CAC80811.1| polymerase [Stork hepatitis B virus]
Length = 790
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T I A R
Sbjct: 447 ISLDLSQAFYHLPLNPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEISR 506
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + + L S + A LQ +N ++ PV T ++LG
Sbjct: 507 RFNVWTFSYMDDFLLCHPSARHLNSISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG 564
>gi|17932890|emb|CAC80817.1| polymerase [Stork hepatitis B virus]
Length = 790
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T I A R
Sbjct: 447 ISLDLSQAFYHLPLNPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEISR 506
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + + L S + A LQ +N ++ PV T ++LG
Sbjct: 507 RFNVWTFSYMDDFLLCHPSARHLNSISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG 564
>gi|17932894|emb|CAC80820.1| polymerase [Stork hepatitis B virus]
Length = 790
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T I A R
Sbjct: 447 ISLDLSQAFYHLPLNPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEISR 506
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + + L S + A LQ +N ++ PV T ++LG
Sbjct: 507 RFNVWTFSYMDDFLLCHPSARHLNSISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG 564
>gi|326680555|ref|XP_003201549.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1445
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 152/375 (40%), Gaps = 79/375 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P D LQ F K+DL AY V +R + +
Sbjct: 551 YRGLNDITIKNRYPLPLMSSAFDLLQGARFFTKLDLRNAYHLVRMREGDEWKTAFNTPTG 610
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + R
Sbjct: 611 HFEYLVLPFGLTNAPAVFQALVN---DVLRDMINQFVFVYLDDILIFSSTMQEHVQHVRR 667
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT---LDSKSL-------PLEKQSTIQ 249
+ L + V E+ VQ+ +LG + + +D + P + + +Q
Sbjct: 668 VLQRLLENQLYVKAEKCKFH-VQSVSFLGHIISVEGLRMDPAKVRAVSDWPPPDSRKALQ 726
Query: 250 RYL----------------------LTLTQIQW-WSVA----------LHRSSPIF---P 273
R+L LT T+I++ WSVA L S+PI
Sbjct: 727 RFLGFANFYRRFIRNFGRVAAPLTALTSTRIRFGWSVAAQTAFDHLKSLFTSAPILITPD 786
Query: 274 QAPQVFVSTDASNSGWGAIV-----DNHSLGGVWSDH-----QEMWHINLKEMFAVRSAL 323
A Q V DAS G GA++ DN + H + + + +E+ AVR AL
Sbjct: 787 PARQFVVEVDASEVGVGAVLSQTAQDNKLHPCAYFSHCLSPTERNYDVGNRELLAVRLAL 846
Query: 324 ERKLPVLQDKVV--LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMAR 380
L+ V L+ +D++ + YI ++ K L +A + L R N TL
Sbjct: 847 GEWRHWLEGAAVPFLVWTDHRN-LQYI------QTAKRLNARQARWALFFGRFNFTL--S 897
Query: 381 YIPGKFNTWADSLSR 395
Y PG N+ D+LSR
Sbjct: 898 YRPGSKNSKPDALSR 912
>gi|40786837|gb|AAR89929.1| polymerase protein [Duck hepatitis B virus]
Length = 787
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P P+ L++ +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPFNPASSSRLAISDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + + + LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNAISHSVCSFLQELGVRINFDKTTPSPVNEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLE 243
+D K L +E
Sbjct: 564 ----IDQKYLKIE 572
>gi|301607281|ref|XP_002933262.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1065
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ F K+DL AY + IR + + RD
Sbjct: 263 YRGLNKITVKNRYPLPLISELFDQVRNAKFFTKLDLRGAYNLIRIRVGDEWKTAFNTRDG 322
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ + + R+ R
Sbjct: 323 HYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGLFVVVYLDDILIFSSNQSDHRNHVREV 380
Query: 201 VATL 204
+ L
Sbjct: 381 LLRL 384
>gi|67625725|tpe|CAJ00251.1| TPA: gag-pol polyprotein [Schistosoma mansoni]
Length = 1154
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 139/356 (39%), Gaps = 75/356 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ +DL Y+ +PI+ S + + RD Y +PFGLA AP F +L
Sbjct: 492 DRLQNATVFTVLDLRSGYWQLPIKESDRSKTAFTIRDKQYQFRRMPFGLAGAPFTFRRLM 551
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
+ + L N V VY DD+++ +Q A + ++ +N ++S +
Sbjct: 552 SLLLRDLDN----VEVYGDDVVVYSQTETDHAKHVEAVLKRIEEFGLRINKDKSQMAKSS 607
Query: 223 TCQYLGIMWNPTLDSKSLPLEKQSTIQRY------------------------------- 251
+ N + K LP EK TI+
Sbjct: 608 ITLLGHKVGNGEI--KPLP-EKILTIKNVAVPNSRRKLRQFLGRAAFYSRFIKNFNEIAA 664
Query: 252 ----LLTLTQIQWWSVALHRSSPI------------FPQAPQVF-VSTDASNSGWGAIVD 294
LL+ T+ W A + I P+ + F V+TDAS+ G GA++
Sbjct: 665 PLYKLLSNTKFSWTETAQQTFNQIKNVLDDRQMTLRLPELEKPFTVTTDASDHGIGAVLS 724
Query: 295 NHS-----LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTV--VSY 347
+ V + ++ + KE A+ A+++ P L + I++D++ + +
Sbjct: 725 QSNRVVEYASRVLTPAEQKYSTIEKECLAIVWAVDKWRPYLLGRRFHIETDHKPLQWLQT 784
Query: 348 IHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR---QKELP 400
G + ++R E +D ++ H +PGK N AD LSR + ELP
Sbjct: 785 ARDPRGKLARWMIRLQE--YDFSIGH--------VPGKENVMADYLSRPDMEAELP 830
>gi|291225352|ref|XP_002732664.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 553
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 150/397 (37%), Gaps = 83/397 (20%)
Query: 91 KKFHLINHFRVPD---FLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM 144
K+ H + + R+ D F+ + G L KID+ A+ P+R L + +
Sbjct: 130 KEDHSLVYSRIDDAVAFIHKHGHGSLLAKIDVKHAFRLCPVRKEDWHLLGFFWEGCYFFD 189
Query: 145 TCLPFGLASAPQVFAKLTN---WIANYLRNLGMRVIVYLDDLL-LGNQDSVLLRSQARAA 200
LPFGL SAP +F ++ + WI ++ R + YLDD L +G +S +
Sbjct: 190 RVLPFGLRSAPYLFNRIADAIHWIVSH-RARNKDFLHYLDDFLTVGPANSNACQHNMDVM 248
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLP--------------LEKQS 246
+ + L + E+ V P +LG+ + LP L + +
Sbjct: 249 LQSCHHLGVPIATEK-VEGPCSVITFLGVELDTVNMVIRLPKDKLADLLVKLPSWLTRHT 307
Query: 247 TIQRYLLTLT------------------------------------------QIQWWSVA 264
+R LL+L +QWW
Sbjct: 308 CSKRELLSLIGCLSFACKCIPAGRIFLRSMIDISMTATSLSQVITLTDEFWHDVQWWCDF 367
Query: 265 LHR-------SSPIFPQAPQVFVSTDASNS-GWGAIVDNHSLGGVWS---DHQEMWHINL 313
L +P + +P+ + TDAS + G+G + H W + ++ I
Sbjct: 368 LPSWNGTASLLNPNWIPSPEFELFTDASATLGYG---EGHWFANTWPTFITNDPLYSIAW 424
Query: 314 KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRH 373
KE+ + + + DN +VV I K+G + ++++ V LF A +
Sbjct: 425 KELLPILLSSLIWGHSWYGLRIRFHCDNISVVQ-IWKKGSSSCPRIMQLVRLLFFTAASN 483
Query: 374 NITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQ 410
N +M +I G N ADSLSRQ+ L L P+ +
Sbjct: 484 NFHVMISHISGFNNDIADSLSRQQILRFQRLAPQADR 520
>gi|326667102|ref|XP_003198486.1| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1177
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G KIDL+QAY V + +++ ++ LY L FG++SAP +F ++
Sbjct: 365 LSGGKVFSKIDLAQAYQQVLLDDDSKKYTTINTHKGLYVYNRLAFGISSAPSIFQRI--- 421
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDS 190
+ N +++L +V+VYLDDLL+ +D
Sbjct: 422 MENLMKDL--KVVVYLDDLLIVGKDE 445
>gi|270015520|gb|EFA11968.1| hypothetical protein TcasGA2_TC004049 [Tribolium castaneum]
Length = 1585
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 100 RVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFA 159
R+P F +F +DL Y+ VP+ P + V +D Y +PFGL +AP VF
Sbjct: 910 RLPGF----EFFTTLDLFSGYYQVPMSPESIPLTAFVTQDGHYEFLRMPFGLTNAPAVFM 965
Query: 160 KLTNWIANYLRNLGMRVIVYLDDLLL 185
+L N + LR +V+ Y+DD+L+
Sbjct: 966 RLINNVLGQLR--FTKVLCYMDDVLI 989
>gi|189242355|ref|XP_001810254.1| PREDICTED: similar to protease, reverse transcriptase, ribonuclease
H, integrase [Tribolium castaneum]
Length = 1071
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 144/367 (39%), Gaps = 72/367 (19%)
Query: 88 LSLKKFHLINHFR-VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLS-VVYRDTLYCMT 145
+S K + I H + D L+ + KIDL Q Y+ VP+ + + V L+
Sbjct: 289 VSQKDAYPIPHINGILDKLRGAKYFSKIDLKQGYWQVPLAEESKPITAFTVPNRGLFQFK 348
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL SAP F +L + + + G YLDD+++ + + L+
Sbjct: 349 VMPFGLHSAPATFQRLLDRVLGPEMDSG--AFAYLDDIIVLGRTKEEHQENLATVFRKLR 406
Query: 206 SLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTIQRYLLTLTQI 258
+ + N E+ + +YL G+ +P+ L L + ++ L
Sbjct: 407 KAKLTPNWEKCSFGQTR-LEYLGHIVSSQGVSTDPSKVKAILELPPPTNVKELRRFLGIA 465
Query: 259 QWW----------SVALHR--------------------------SSPIF--PQAPQVFV 280
W+ + AL+R +P+ P + FV
Sbjct: 466 SWYRKFVPVFSQVAAALNRLLKKKQKWEWGNEQKEAFKKIKQLLTEAPVLACPDFTKTFV 525
Query: 281 -STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVL 330
TDAS+ G GA + + GG SD Q + KE A+ A+++ P +
Sbjct: 526 LQTDASDLGLGAALIQNLDGGDRVIAYASCSLSDQQTKYSTTEKECLAIVWAIQKMRPYI 585
Query: 331 QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEAL--FDLAVRHNITLMARYIPGKFNT 388
+ +++SD+Q + ++ K+ K +L R + L +D V RY G N
Sbjct: 586 EGYHFVVESDHQP-LKWLMKQPEPKG-RLARWIMTLQQYDFEV--------RYRKGVLNQ 635
Query: 389 WADSLSR 395
AD+LSR
Sbjct: 636 VADALSR 642
>gi|54291803|gb|AAV32172.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR R + R
Sbjct: 939 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIRKTAFTTRYG 998
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 999 LYKFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1056
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ R L + W + ++LG
Sbjct: 1057 LGKLRERRLYAKLSKCEFW-LSEVKFLG 1083
>gi|270016623|gb|EFA13069.1| hypothetical protein TcasGA2_TC006868 [Tribolium castaneum]
Length = 1447
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 144/367 (39%), Gaps = 72/367 (19%)
Query: 88 LSLKKFHLINHFR-VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLS-VVYRDTLYCMT 145
+S K + I H + D L+ + KIDL Q Y+ VP+ + + V L+
Sbjct: 665 VSQKDAYPIPHINGILDKLRGAKYFSKIDLKQGYWQVPLAEESKPITAFTVPNRGLFQFK 724
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL SAP F +L + + + G YLDD+++ + + L+
Sbjct: 725 VMPFGLHSAPATFQRLLDRVLGPEMDSG--AFAYLDDIIVLGRTKEEHQENLATVFRKLR 782
Query: 206 SLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTIQRYLLTLTQI 258
+ + N E+ + +YL G+ +P+ L L + ++ L
Sbjct: 783 KAKLTPNWEKCSFGQTR-LEYLGHIVSSQGVSTDPSKVKAILELPPPTNVKELRRFLGIA 841
Query: 259 QWW----------SVALHR--------------------------SSPIF--PQAPQVFV 280
W+ + AL+R +P+ P + FV
Sbjct: 842 SWYRKFVPVFSQVAAALNRLLKKKQKWEWGNEQKEAFKKIKQLLTEAPVLACPDFTKTFV 901
Query: 281 -STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVL 330
TDAS+ G GA + + GG SD Q + KE A+ A+++ P +
Sbjct: 902 LQTDASDLGLGAALIQNLDGGDRVIAYASCSLSDQQTKYSTTEKECLAIVWAIQKMRPYI 961
Query: 331 QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEAL--FDLAVRHNITLMARYIPGKFNT 388
+ +++SD+Q + ++ K+ K +L R + L +D V RY G N
Sbjct: 962 EGYHFVVESDHQP-LKWLMKQPEPKG-RLARWIMTLQQYDFEV--------RYRKGVLNQ 1011
Query: 389 WADSLSR 395
AD+LSR
Sbjct: 1012 VADALSR 1018
>gi|211925534|dbj|BAG81990.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 450
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 110 SKGDWRPCGD--YCSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 167
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 168 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 223
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ RA L + +N+++ L+ V + +LG
Sbjct: 224 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLG 262
>gi|294899773|ref|XP_002776736.1| hypothetical protein Pmar_PMAR017604 [Perkinsus marinus ATCC 50983]
gi|239883937|gb|EER08552.1| hypothetical protein Pmar_PMAR017604 [Perkinsus marinus ATCC 50983]
Length = 1374
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 91 KKF-HLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFL-----SVVYRDTLYCM 144
KKF H R P+ G +++ID + AY ++PI QR+ S + TL C
Sbjct: 370 KKFLHEKGKIRGPNEGDDGQVMIEIDCAAAYRNIPILQEEQRYCMNFIPSKTGKGTLICH 429
Query: 145 TCLPFGLASAP----QVFAKLTNWIANYLRNL-GMRVIVYLDDLL-LGNQDSVLLRSQAR 198
T LPFGL+S+ +V+A L + L G VY+DDL+ + + + L R A
Sbjct: 430 TKLPFGLSSSGLQWVRVYAGLVQVVKRLLAYPHGEGAQVYIDDLVYITTRRAALHRLLAI 489
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQ 245
+ + S N R PV LG WN L + ++P ++Q
Sbjct: 490 LLLHAAVGINISYNKVRVSSTPV----VLGYEWNTELGTVAVPTDRQ 532
>gi|301622869|ref|XP_002940749.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 735
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 153/385 (39%), Gaps = 86/385 (22%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + IR + + RD
Sbjct: 201 YRGLNKITVKNRYPLPLISELFDRVKGATIFSKLDLRGAYNLIRIREGDEWKTAFNTRDG 260
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N I L LG V+VYLDD+L+ + R+ +
Sbjct: 261 HYEYLVIPFGLCNAPAVFQELVNDIFRDL--LGRSVVVYLDDILIYSNSLSDHRAHVQEV 318
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL---PLEKQS----------- 246
+ L+ +E+ + + V + +LG + + K L P++ Q+
Sbjct: 319 LLRLRQHHLYAKIEKCI-FEVSSVHFLGYI----ISHKGLEMDPVKVQAILNWVQPLSLR 373
Query: 247 TIQRYL--------------------LTLT----------QIQWWSVALHRS---SPIFP 273
IQR+L LT + Q L RS +PI
Sbjct: 374 AIQRFLGFANYYRQFIKNFSTLVAPITALTKGADPSIWPIEAQQAFTELKRSFTTAPILR 433
Query: 274 Q---APQVFVSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAV 319
A Q + DAS GA++ S S + + + +E+ A+
Sbjct: 434 HPDPARQFILEVDASEHALGAVLSQRSDFKSQLHPIAFFSRKLSQSERNYDVGDRELLAI 493
Query: 320 RSALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNIT 376
+SA + R L + +L+ SD++ + Y+ +S K LR +A + L R N
Sbjct: 494 KSAFQEWRHLLEGANHPILVFSDHKN-LEYL------RSAKRLRPRQARWALFFSRFNFH 546
Query: 377 LMARYIPGKFNTWADSLSRQKELPD 401
+ R P N AD+LSR P+
Sbjct: 547 VTFR--PDSKNGKADALSRMFPAPE 569
>gi|49256739|emb|CAG34127.1| polyprotein [Yarrowia lipolytica]
Length = 1240
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 136/359 (37%), Gaps = 84/359 (23%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L D K DL Y+ V ++ S + R Y +PFGL +AP F +L
Sbjct: 383 DCLDGADTFSKFDLLSGYWQVLVKESDVHKTAFSTRSGHYEYLVMPFGLCNAPATFQRLM 442
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR L V VYLDD+++ +++ + R + L++ ++ + L+
Sbjct: 443 N---DALRPFLNKTVCVYLDDIIVFSRNREDHKRHVREVLDALRAQKFYAKKSKCELF-R 498
Query: 222 QTCQYLGIM------------------WNPTLDSKSL----------------------P 241
+ +LG + W P K L P
Sbjct: 499 KKMGFLGHVVSAAGVEPDPEKVKVVEEWVPPNTPKGLLSFLGLTGYYRRFIEDYAKIAAP 558
Query: 242 LEKQSTIQRYLLTLTQIQW---WSVALHRSSP--------IFPQAPQVF-VSTDASNSGW 289
L +T L+ T +W VA + I P F VSTDA +
Sbjct: 559 LTDAAT-----LSPTDFKWTEACQVAFEQMKAKLVSNEVMIIPTMEDTFKVSTDACDIAM 613
Query: 290 GAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQ 338
G ++ S + H+ + KE +A+ AL + L + LI+
Sbjct: 614 GGVLQQWSPKDQEFRPVAYESTKFKKHEMNYPTREKEFYAIIHALRKWRHYLLGRPFLIE 673
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVE--ALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+D+Q+ +SY + S +L R ++ A +D + +Y+PGK N AD LSR
Sbjct: 674 TDHQS-LSYFTSQTHPPSGRLSRWLDFLAEYDFEI--------KYVPGKDNDAADGLSR 723
>gi|432867315|ref|XP_004071132.1| PREDICTED: uncharacterized protein LOC101166628 [Oryzias latipes]
Length = 3119
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 73 LSSRDGFQDLGDRAFLSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIR 126
+S +DG L +++ ++ + +P L G K+DLS AY + +
Sbjct: 1336 VSKKDGTVRLCGDFKVTINPVLCVDKYPIPRIEDLFASLAGGQRFSKLDLSNAYLQMEVE 1395
Query: 127 PSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVI-VYLDDLLL 185
++ L++ L+C LPFG+ASAP +F K + + LG+ YLDD+L+
Sbjct: 1396 EESKKLLTISTEKGLFCFNRLPFGIASAPALFQKAMDQVL-----LGLPFTHCYLDDILV 1450
Query: 186 GNQDSVLLRSQARAAVATLQSL-RWSVNLER-SVLWPVQTCQYLG 228
D + RA A L L + +++++ L+ + +YLG
Sbjct: 1451 SGPDE---ETHLRALDAVLTRLGEYGLHVKQDKCLFFQDSVEYLG 1492
>gi|410730499|ref|XP_003980070.1| hypothetical protein NDAI_0G04090 [Naumovozyma dairenensis CBS 421]
gi|401780247|emb|CCK73394.1| hypothetical protein NDAI_0G04090 [Naumovozyma dairenensis CBS 421]
Length = 1430
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 137/359 (38%), Gaps = 87/359 (24%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ K+DL Y VPI + + + + Y +PFGL +AP F +L
Sbjct: 571 DQLRGATIFSKLDLVSGYHQVPIAEGDRYKTAFITQRGQYQWNVMPFGLTNAPATFQRLM 630
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N I LR +G IVYLDD+L+ ++ + +Q+LR E +
Sbjct: 631 NHI---LREYIGKFCIVYLDDILIYSKTE---EEHIKHITNIMQALR-----EHHLFAKR 679
Query: 222 QTCQYL--------------GIMWNP----TLDSKSLPLEKQSTIQRYLLTL-------- 255
C + GI +P + + S P + +S QR+L +
Sbjct: 680 SKCSFFLHQVGFLGHVINSTGIHSDPEKIVCIKNWSAPKDNKS-CQRFLGLIGYYRRFIK 738
Query: 256 -----------------TQIQW---WSVALHRSSPIFPQAP---------QVFVSTDASN 286
+++W A + +AP V V+TDASN
Sbjct: 739 DFSNIAKPLREYANDKSKKVKWNKEQEFAFEKLKRALLEAPVLKPFDHNLDVVVTTDASN 798
Query: 287 SGWGAIVDNHSLGGVWS----------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVL 336
+ G ++ G + H+ W I KE FA+ LE+ L K
Sbjct: 799 TAIGGTLELFKDGRFYGVVAYMSKALHGHELNWPIREKEFFAIICCLEKWRHYLLGKKFK 858
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ +D+Q+ + Y+ E +SFK LR D+A + YI GK N D+LSR
Sbjct: 859 LYTDHQS-LKYVLTE---RSFK-LRLARWWEDMA---EYSFEIDYIKGKTN-HVDALSR 908
>gi|40786849|gb|AAR89939.1| polymerase protein [Sheldgoose hepatitis B virus]
Length = 785
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P P+ L++ +Y P G+ +P + T + + + R
Sbjct: 442 ISLDLSQAFYHLPFNPASSSRLAISDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 501
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + A LQ L +N +++ PV ++LG
Sbjct: 502 RFNVWTFTYMDDFLLCHPNARHLHAISNAVCTFLQELGVRINFDKTTPSPVHEIRFLGY- 560
Query: 231 WNPTLDSKSLPLEK 244
+DS + +E+
Sbjct: 561 ---EIDSTYMKIEE 571
>gi|308446277|ref|XP_003087141.1| hypothetical protein CRE_30354 [Caenorhabditis remanei]
gi|308260969|gb|EFP04922.1| hypothetical protein CRE_30354 [Caenorhabditis remanei]
Length = 739
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 139/345 (40%), Gaps = 77/345 (22%)
Query: 115 DLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGM 174
DL Y+ +P++ + + L+ LPFGLA++P +F + L LG
Sbjct: 72 DLLAGYWQLPLKEESKEITAFAIGSELFEWNVLPFGLATSPAIFQAAMECVVGDL--LGT 129
Query: 175 RVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWS-VNLERSVLWPV-QTCQYLGIMWN 232
V VY+DDLL+ +++ ++ A L+ + S + L+ S W + YLG M
Sbjct: 130 CVFVYVDDLLIASEN---MKEHAIHVQTILERIEKSGMKLKASKCWIAREEVDYLGHMIT 186
Query: 233 PT-LDSKSLPLEKQSTIQR-------------------YLLTLTQIQW------------ 260
P + ++ ++K R ++++ ++I +
Sbjct: 187 PEGVKTEEAKVDKMKKFARPEDVKQLQSFLGLVGYYRNFIMSYSKIAYPLNFLTSKKNAW 246
Query: 261 -WSVALHR----------SSPIFPQA-PQVFVS--------TDASNSGWGAIVDNHSLGG 300
W S+P+ Q P+ +S TDAS G GA++ + G
Sbjct: 247 VWGTEQENAFVQLKSSVCSAPVLRQPDPETAISGARPYLIYTDASRQGVGAVLAQEANDG 306
Query: 301 ----------VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK 350
+ + +HI E A+ AL R ++ V++ +D++ ++S +
Sbjct: 307 EQHPIAFASKSLTSAETRYHITDLEALAMMFALRRFRTIIYGSQVIVFTDHKPLISLMR- 365
Query: 351 EGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
G + +L+R L + N +++ + GK N AD+LSR
Sbjct: 366 -GSRLADRLMRWSIELIEF----NPKIVS--VKGKANVVADALSR 403
>gi|328699183|ref|XP_003240855.1| PREDICTED: hypothetical protein LOC100569596 [Acyrthosiphon pisum]
Length = 1663
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 99/451 (21%), Positives = 180/451 (39%), Gaps = 101/451 (22%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHV 123
LL+ +DG F+ GD + L + + + +P DF L K+DL +AY V
Sbjct: 470 LLVPKKDGSFRPCGD--YRRLNSVTVPDRYPLPYLHDFTANLAGKTVFTKLDLVRAYNQV 527
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
PI +V L+ + FGL +A Q F +L N + L L V Y+DD+
Sbjct: 528 PIAAGDVHKTAVTTPFGLFEFPVMCFGLCNAAQTFQRLVNTV---LAGLDF-VFAYVDDV 583
Query: 184 LLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----PTLDSK 238
L+ + ++ RA + + ++N + V + T +LG + + P DS
Sbjct: 584 LIASTNAEQHVEHVRAVLGRFEEFGIAINPAKCV-FAASTLTFLGHVVDAQGLRPNPDSV 642
Query: 239 SL------PLEKQSTIQRYLLTLT----------QIQ-----------------WWSVAL 265
+ P K+ +QR+L +L +Q W+ A
Sbjct: 643 DIIRRWPQPNTKKE-LQRFLGSLNFYHRFVHGAANVQAPLYDISAAIKKKDGPLAWTDAA 701
Query: 266 HRSSPIFPQA---------PQ----VFVSTDASNSGWGAIVDNHSLGGVW---------- 302
++ + +A PQ + ++TDASN GA+++ S+ W
Sbjct: 702 RKAFLVCREALVTSALLVHPQRDAPLRLTTDASNIAVGAVLE-QSVDNEWQPLGFFSRKL 760
Query: 303 SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
S Q + +E+ A A + ++ + V +++D++ ++ F ++
Sbjct: 761 SGAQTRYSAYDRELLAAYLAARHFVHAIEGRFVTLRTDHRPLL-----------FMFSQK 809
Query: 363 VEALFDLAVRHNITLMARY------IPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQW 416
E L D RH + +++Y + G+ N D+LSR + P + LP++ Q Q
Sbjct: 810 AEKLIDRQARH-VAFLSQYFHEVEHVSGELNIVPDALSRLELAPLDNGLPDLDQWATEQA 868
Query: 417 GVPEIDLFATANSAAFL------VQGGPLKF 441
++ T + + L GGP+ F
Sbjct: 869 NDTDLQDILTGKTESSLELEARQTAGGPVYF 899
>gi|291237360|ref|XP_002738603.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 539
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 138/372 (37%), Gaps = 74/372 (19%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN---WIA 166
F D+ A+ P+R L + + LPFGL SAP +F ++ + WI
Sbjct: 138 FTSMADVKHAFRLCPVRKEDWHLLGFFWEGCYFFDRVLPFGLRSAPYLFNRIADAIHWII 197
Query: 167 NYLRNLGMRVIVYLDDLL-LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ R ++ YLDD L +G ++ + + + L + E+ V P
Sbjct: 198 SH-RARNKDILHYLDDFLTVGPANTNACQHNMDVMLQSCHHLGVPIATEK-VEGPCSVIT 255
Query: 226 YLGIMWNPTLDSKSLP--------------LEKQSTIQRYLLTLT--------------- 256
+LG+ + LP L + + +R LL+L
Sbjct: 256 FLGVELDTVNMVIRLPKDKLADLLVKLPSWLTRHTCSKRELLSLIGCLSFACKCMLAGRI 315
Query: 257 ---------------------------QIQWWSVALHR-------SSPIFPQAPQVFVST 282
+QWW L +P + +P+ + T
Sbjct: 316 FLRRMIDISMTATSLSQVITLTDEFWHDVQWWCDFLPSWNGTASLLNPNWIPSPEFELFT 375
Query: 283 DASNS-GWGAIVDNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQ 338
DAS + G+GA H W + ++ I KE+ + + + +
Sbjct: 376 DASATLGYGAFYKGHWFANTWPTFITNDPLYSIAWKELLPILLSSLIWGHLWYGLRIRFH 435
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKE 398
DN +VV I K+G + ++++ V LF A +N +M +I G N ADSLSRQ+
Sbjct: 436 CDNISVVQ-IWKKGSSSCPRIMQLVRLLFFTAASNNFHVMISHISGFNNDIADSLSRQQI 494
Query: 399 LPDWHLLPEVTQ 410
L L P+ +
Sbjct: 495 LRFQRLTPQADR 506
>gi|302309734|ref|XP_002999545.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049071|emb|CAR58026.1| unnamed protein product [Candida glabrata]
Length = 1504
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 142/367 (38%), Gaps = 91/367 (24%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L K+DL Y V + + S + + Y +PFGL +AP F +L
Sbjct: 595 DSLHGAKIFSKLDLISGYHQVSVNEPDRYKTSFITHEGQYQWNVMPFGLTNAPATFQRLM 654
Query: 163 NWIANYLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR + +VYLDD+L+ S L LR + L+P
Sbjct: 655 NAV---LRPYISKFCVVYLDDILIY---SKTREEHLHHISQVLDKLR------KHSLYPK 702
Query: 222 QT--------CQYLGIMWNP---TLDSKSLPLEKQSTIQR-------------------- 250
++ Q+LG + N + D + + KQ I R
Sbjct: 703 KSKCHFMLTQVQFLGHVINANGISTDPEKINAIKQWPILRNYKDAQRFLGLANYYRRFIK 762
Query: 251 ---------YLLTLTQIQWWSVALHR----------SSPIF----PQAP-QVFVSTDASN 286
Y + W+ H S+PI P++P Q+ ++ DAS+
Sbjct: 763 NFSKMASPLYEFAAKKNTKWTTECHNAFISLKDALISAPILIAFDPKSPYQLTMTVDASD 822
Query: 287 SGWGAIV---DNHSLGGVWS-------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVL 336
+ GA + D GV + ++ WHI KE++A+ AL++ +Q V+
Sbjct: 823 NCIGATLEYKDGRKPKGVIAYLSHKLHSYETRWHIRDKELYAIVFALKKWTHYVQGSHVI 882
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLR--EVEALFDLAVRHNITLMARYIPGKFNTWADSLS 394
I +D++T V+ S +L R EV A +D + +YIPG N AD LS
Sbjct: 883 IYTDHKTNVNL--NRLALLSPRLARWAEVLANYDFEI--------KYIPGPRN-HADILS 931
Query: 395 RQKELPD 401
R P+
Sbjct: 932 RPPGEPE 938
>gi|147771912|emb|CAN66767.1| hypothetical protein VITISV_026741 [Vitis vinifera]
Length = 1205
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K ++ N + +P D L + + K+DL Y+ V I + + V R
Sbjct: 461 YRALNKVNIKNKYPIPLAAELFDRLSKASYFTKLDLRSGYWQVRIAAGDEGKTTCVTRYG 520
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL +AP LTN + +YL ++VYLDD+++ ++ R
Sbjct: 521 SYEFLVMPFGLTNAPATLCNLTNDVLFDYLDAF---MVVYLDDIVVYSKTLTEHEKHLRL 577
Query: 200 AVATLQSLRWSVNLER 215
L+ R+ V LE+
Sbjct: 578 VFQRLRENRFYVKLEK 593
>gi|210076138|ref|XP_002143073.1| YALI0E14388p2 [Yarrowia lipolytica]
gi|199426919|emb|CAR64332.1| YALI0E14388p2 [Yarrowia lipolytica CLIB122]
Length = 1488
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 136/359 (37%), Gaps = 84/359 (23%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L D K DL Y+ V ++ S + R Y +PFGL +AP F +L
Sbjct: 631 DCLDGADTFSKFDLLSGYWQVLVKESDVHKTAFSTRSGHYEYLVMPFGLCNAPATFQRLM 690
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR L V VYLDD+++ +++ + R + L++ ++ + L+
Sbjct: 691 N---DALRPFLNKTVCVYLDDIIVFSRNREDHKRHVREVLDALRAQKFYAKKSKCELF-R 746
Query: 222 QTCQYLGIM------------------WNPTLDSKSL----------------------P 241
+ +LG + W P K L P
Sbjct: 747 KKMGFLGHVVSAAGVEPDPEKVKVVEEWVPPNTPKGLLSFLGLTGYYRRFIEDYAKIAAP 806
Query: 242 LEKQSTIQRYLLTLTQIQW---WSVALHRSSP--------IFPQAPQVF-VSTDASNSGW 289
L +T L+ T +W VA + I P F VSTDA +
Sbjct: 807 LTDAAT-----LSPTDFKWTEACQVAFEQMKAKLVSNEVMIIPTMEDTFKVSTDACDIAM 861
Query: 290 GAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQ 338
G ++ S + H+ + KE +A+ AL + L + LI+
Sbjct: 862 GGVLQQWSPKDQEFRPVAYESTKFKKHEMNYPTREKEFYAIIHALRKWRHYLLGRPFLIE 921
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVE--ALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+D+Q+ +SY + S +L R ++ A +D + +Y+PGK N AD LSR
Sbjct: 922 TDHQS-LSYFTSQTHPPSGRLSRWLDFLAEYDFEI--------KYVPGKDNDAADGLSR 971
>gi|50402587|gb|AAT76628.1| polyprotein [Candida glabrata]
Length = 1504
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 146/367 (39%), Gaps = 91/367 (24%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L K+DL Y V + + S + + Y +PFGL +AP F +L
Sbjct: 595 DSLHGAKIFSKLDLISGYHQVSVNEPDRYKTSFITHEGQYQWNVMPFGLTNAPATFQRLM 654
Query: 163 NWIANYLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR + +VYLDD+L+ ++ R + ++ + L + L+P
Sbjct: 655 NAV---LRPYISKFCVVYLDDILIYSK----TREEHLHHISQVLD-----KLRKHSLYPK 702
Query: 222 QT--------CQYLGIMWNP---TLDSKSLPLEKQSTIQR-------------------- 250
++ Q+LG + N + D + + KQ I R
Sbjct: 703 KSKCHFMLTQVQFLGHVINANGISTDPEKINAIKQWPILRNYKDAQRFLGLANYYRRFIK 762
Query: 251 ---------YLLTLTQIQWWSVALHR----------SSPIF----PQAP-QVFVSTDASN 286
Y + W+ H S+PI P++P Q+ ++ DAS+
Sbjct: 763 NFSKMASPLYEFAAKKNTKWTTECHNAFISLKDALISAPILIAFDPKSPYQLTMTVDASD 822
Query: 287 SGWGAIV---DNHSLGGVWS-------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVL 336
+ GA + D GV + ++ WHI KE++A+ AL++ +Q V+
Sbjct: 823 NCIGATLEYKDGRKPKGVIAYLSHKLHSYETRWHIRDKELYAIVFALKKWTHYVQGSHVI 882
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLR--EVEALFDLAVRHNITLMARYIPGKFNTWADSLS 394
I +D++T V+ S +L R EV A +D + +YIPG N AD LS
Sbjct: 883 IYTDHKTNVNL--NRLALLSPRLARWAEVLANYDFEI--------KYIPGPRN-HADILS 931
Query: 395 RQKELPD 401
R P+
Sbjct: 932 RPPGEPE 938
>gi|260940779|ref|XP_002615229.1| hypothetical protein CLUG_04111 [Clavispora lusitaniae ATCC 42720]
gi|238850519|gb|EEQ39983.1| hypothetical protein CLUG_04111 [Clavispora lusitaniae ATCC 42720]
Length = 1210
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 146/356 (41%), Gaps = 76/356 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D +Q +DL Y V I + V Y +PFGL +AP F +L
Sbjct: 277 DTIQGAKVFSSLDLHSGYHQVAIAEEDYDKTAFVTPYGQYAWRVMPFGLTNAPATFQRLM 336
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNL--ERSVLWP 220
N I + + L V+VYLDD+L+ ++ + R + LR + NL +R +
Sbjct: 337 NEI--FHKILNKTVVVYLDDILVFSKTQ---KDHKRDLEEVFKILRAN-NLIAKRRKCYF 390
Query: 221 VQT-CQYLGIM-----WNPTLDS----KSLPLEKQST---------------IQRYL--- 252
QT +LG + +P D ++ P+ K I++Y
Sbjct: 391 FQTRLNFLGHVISSEGISPNEDKIKAIRTWPIPKSKKEALSFLGLTTYYRRFIEKYAHIA 450
Query: 253 -----LTLTQIQWWSVALHR---------SSPI--FPQAPQVF-VSTDASNSGWGAIV-- 293
T + +W S+PI P Q + V TDAS+ GA++
Sbjct: 451 ASLYDYTAEKTKWTEEQTRSFNELKDRLVSAPILILPDPKQKYVVYTDASDRCIGAVLQQ 510
Query: 294 --DNHSLGGV-------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTV 344
+H L GV S Q + + KE A+ AL++ L ++ SD+Q+
Sbjct: 511 TDKHHKLLGVVAYESKKLSGAQLNYPVREKECLAIHYALKKWQHYLSGTNFIVYSDHQS- 569
Query: 345 VSYIHKEGGTKSFKLLREVE--ALFDLAVRHNITLMARYIPGKFNTWADSLSRQKE 398
++YI + ++ ++LR +E A FD + +YIPG N AD+LSRQ +
Sbjct: 570 LNYI-RTTPHQNPRILRWLEFFARFDFEI--------KYIPGPKNVVADALSRQPQ 616
>gi|17932886|emb|CAC80814.1| polymerase [Stork hepatitis B virus]
Length = 790
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V Y P G+ +P + T I A R
Sbjct: 447 ISLDLSQAFYHLPLNPASSSRLAVSDGKQAYYFRKAPMGVGLSPFLLHLFTTAIGAEISR 506
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + + L S + A LQ +N ++ PV T ++LG
Sbjct: 507 RFNVWTFSYMDDFLLCHPSARHLNSISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG 564
>gi|88595461|gb|ABD43037.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 143
Score = 55.1 bits (131), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKNEEEHARHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R L + V W
Sbjct: 124 LDILRTERLYAKLSKCVFW 142
>gi|326677098|ref|XP_003200757.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1274
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 448 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 505
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 506 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLFVKAEKCVFH-A 561
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 562 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 619
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 620 APLTSLTSSKTPFRWTSAAEAAFSKLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 679
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G V S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 680 SQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 739
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 740 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTIS--YRPGSKNIKPDALSR 786
>gi|147773061|emb|CAN71692.1| hypothetical protein VITISV_015629 [Vitis vinifera]
Length = 372
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F++P D +V KIDL Y + IRP + S +D LY
Sbjct: 7 AINKITIKYRFQIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPRDEWKTSFKTKDELY 66
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+PFGL +AP F ++ + +G V+VY DD+L ++ + +
Sbjct: 67 EWLVMPFGLTNAPSTFMRIMTQVLKPF--IGRFVVVYFDDILTYSRSCEDHEEHLKQVMR 124
Query: 203 TLQSLRWSVNLERSVL 218
TL++ ++ +NL++
Sbjct: 125 TLRAEKFYINLKKCTF 140
>gi|301620353|ref|XP_002939542.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 892
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 147/378 (38%), Gaps = 84/378 (22%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + I+ + + R
Sbjct: 230 YRGLNKITVKNRYPLPLISELFDRVKGASIFTKLDLRGAYNLIRIKEGDEWKTAFNTRAG 289
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD---------SV 191
Y +PFGL +AP VF + N I L LG V+VYLDD+L+ + + V
Sbjct: 290 HYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGRHVVVYLDDILIYSSNLEDHHCHVQEV 347
Query: 192 LLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL----PLEKQST 247
LLR + A L+ + V SV + LG+ PT L PL ++
Sbjct: 348 LLRLRQHHLYAKLEKCIFEVP---SVHFLGYIISELGLEMEPTKVEGILNWAQPLSLRA- 403
Query: 248 IQRYL----------------------------------LTLTQIQWWSVALHRSSPIFP 273
IQR+L + L Q A +S +
Sbjct: 404 IQRFLGFANYYRQFVKGFSSLVAPITALTKKGRPNCWPPVALEAFQSLKDAFISASVLRH 463
Query: 274 QAPQV--FVSTDASNSGWGAIVDN-HSLGG----------VWSDHQEMWHINLKEMFAVR 320
P + F+ DAS+ G GAI+ HS G +S ++ + I +E+ AV+
Sbjct: 464 PEPHLPYFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVK 523
Query: 321 SALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITL 377
ALE R L V I +D++ + +S K +A + L R N L
Sbjct: 524 LALEEWRHLLEGASHPVTIYTDHKNLEFL-------QSLKRQNPRQARWSLFFSRFNFVL 576
Query: 378 MARYIPGKFNTWADSLSR 395
Y PG N AD+LSR
Sbjct: 577 T--YRPGTKNRKADALSR 592
>gi|1542877|emb|CAA65152.1| orf [Drosophila melanogaster]
Length = 1494
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F L K + +++ +P D + K+DL +FHV ++ ++ S V
Sbjct: 772 FRKLNKMTMKDNYPLPLIDDLLDRMNEKTVFTKLDLKNGFFHVHVKKESIKYTSFVTPLG 831
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLLGNQD 189
Y +PFGL +AP VF + N I A+ +R +V+VY+DD+LL ++
Sbjct: 832 QYEWLRMPFGLKNAPSVFQRFVNKIFADMIRE--NKVVVYMDDILLATEN 879
>gi|147797325|emb|CAN73734.1| hypothetical protein VITISV_032119 [Vitis vinifera]
Length = 917
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 135/346 (39%), Gaps = 62/346 (17%)
Query: 89 SLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D + KIDL Y + +RP + + +D LY
Sbjct: 129 AINKITIKYRFSIPQLDDMLDMMAGSCIFTKIDLKSGYHQIRLRPRDEWKTAFKTKDGLY 188
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+PFGL++AP F + N + +G ++VY DD+L+ + S + +
Sbjct: 189 EWLVMPFGLSNAPSTFMRFMNQVLQPF--IGKFLVVYFDDILIYGKTKEDHVSHLQQVMR 246
Query: 203 TLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLE-----KQSTIQRYL---LT 254
L+ + +NL++ +LG++ + +K L ++ ST+ + +
Sbjct: 247 ILRQEKLYINLKKCSFM-TSAIMFLGLV----VSAKGLEVDLGFIRSFSTVMPPITARMK 301
Query: 255 LTQIQWWSVALHRSSPI---FPQAP--------QVF-VSTDASNSGWGAIVDNHS----- 297
Q W A I +AP +VF V+ DASN G G ++
Sbjct: 302 KNQFVWTKAATKAFEEIKKGLTEAPVLQLTDFSKVFEVACDASNVGIGGVLSQEGHPIAF 361
Query: 298 LGGVWSDHQEMWHINLKEMFAVRSALE--------RKLPVLQDKVVLIQSDNQTVVSYIH 349
++ ++ + I KE + V L ++ + D LI ++Q +++ H
Sbjct: 362 FSEKLNEAKQKYSIYDKEFYVVVQTLRYWHHYLLPKEFALYSDHEALIHVNSQKKLNHHH 421
Query: 350 KEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ ++V T + R+ G N D+LSR
Sbjct: 422 GKW----------------VSVLQEYTFVNRHKSGVENKAIDALSR 451
>gi|48696570|ref|YP_024974.1| polymerase protein [Sheldgoose hepatitis B virus]
gi|40786855|gb|AAR89944.1| polymerase protein [Sheldgoose hepatitis B virus]
Length = 796
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P P+ L+V +Y P G+ +P + T + + + R
Sbjct: 453 ISLDLSQAFYHLPFNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 512
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + + LQ L +N +++ PV ++LG
Sbjct: 513 RFNVWTFTYMDDFLLCHPNARHLHAISNSVCNFLQELGIRINFDKTTPSPVTEIRFLGYQ 572
Query: 231 WNPTLDSKSLPLE 243
+DSK + +E
Sbjct: 573 ----IDSKFMRIE 581
>gi|326672413|ref|XP_003199660.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
gi|326675801|ref|XP_002661138.2| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1226
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 447 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 504
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 505 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 560
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 561 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 618
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 619 TPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 678
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G V S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 679 SQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 738
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 739 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSR 785
>gi|12958095|gb|AAK07485.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 1304
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 491 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 548
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 549 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 604
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ RA L + +N+++ L+ V + +LG
Sbjct: 605 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLG 643
>gi|301609896|ref|XP_002934494.1| PREDICTED: hypothetical protein LOC100486224 [Xenopus (Silurana)
tropicalis]
Length = 1709
Score = 55.1 bits (131), Expect = 8e-05, Method: Composition-based stats.
Identities = 81/362 (22%), Positives = 138/362 (38%), Gaps = 78/362 (21%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
+G + K D+ A+ +P+ P L + Y LP G + + F + +I
Sbjct: 835 QGALMAKADVESAFRLLPVHPESLHLLGCYFEGHYYVDRSLPMGCSISCAYFEAFSTFIE 894
Query: 167 NYLRNLG--MRVIVYLDDLL-LGNQDSVLLRSQARAAVATLQSL--RWSVNLERS-VLWP 220
+R VI YLDD L +G Q S L + TLQ + ++ V L R P
Sbjct: 895 WVVREKAGVASVIHYLDDFLCVGPQRSNL----CAVLLETLQEVAEQFGVPLAREKTEGP 950
Query: 221 VQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL--------LTLTQIQWWSVALHRSSPIF 272
+ ++LGI + LP++K T++ + +TL Q+Q L+ + I
Sbjct: 951 ITCLKFLGIEIDTVRQECRLPMDKVLTLKEEVGYARQAKKVTLKQLQSLLGKLNFACRII 1010
Query: 273 PQA----------------PQVFVSTDASNSG----WGAIVDNHS--------------- 297
P P F+ ++ + WG + + +
Sbjct: 1011 PMGRVFSRSLSMATAGIRHPHHFIRLNSEHKADLAVWGTFLQDFNGKVYWPEKVIENPDI 1070
Query: 298 ---------------LGGVW--SDHQEMW-------HINLKEMFAVRSALERKLPVLQDK 333
G W + + W ++ E+F + A+E L +K
Sbjct: 1071 SLFTDAAGATGFGAYFAGKWCAAGWPKEWATGNLTGNLAFLELFPIIVAVELWGKELSNK 1130
Query: 334 VVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSL 393
VL +SDN V ++ + S +L + L ++ NIT A++IPG+ N AD+L
Sbjct: 1131 TVLFRSDNMAAVLAVNNL-TSSSRPVLALLRHLVLRCLQLNITFRAKHIPGEINDIADAL 1189
Query: 394 SR 395
SR
Sbjct: 1190 SR 1191
>gi|326677009|ref|XP_003200729.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1281
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 447 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 504
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 505 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 560
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 561 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 618
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 619 TPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 678
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G V S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 679 SQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 738
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 739 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSR 785
>gi|326675771|ref|XP_003200428.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1491
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 157/394 (39%), Gaps = 80/394 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 406 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 465
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 466 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IKNQLYAKSSKCEFHQTC 521
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 522 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 581
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 582 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 641
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 642 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 701
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 702 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEI 754
Query: 400 PDWHLL--PEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ P++ I QW + + L A N+ +
Sbjct: 755 PDEPIIKSPQIVAPI--QWDIDQEILQAAENNPS 786
>gi|326667704|ref|XP_003198659.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1222
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 153/392 (39%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 404 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 463
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 464 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IKNQLYAKSSKCEFHQTC 519
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 520 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 579
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 580 AMVKANNAHLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 639
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 640 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 699
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 700 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEI 752
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ + QW + + L A N+ +
Sbjct: 753 PDEPIIKDPLIVAPIQWDIEQEILQAAENNPS 784
>gi|326670628|ref|XP_003199256.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1174
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 452 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 509
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 510 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 565
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQ 259
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 566 QSVQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 623
Query: 260 W-------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
WS VA + F AP Q V DAS G GAI+
Sbjct: 624 APLTNLTSSKTPFRWSNAAEVAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 683
Query: 294 DNHS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S L G S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 684 SQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 743
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI K+ K L +A + L R N ++ Y PG N D+LSR
Sbjct: 744 HKN-LEYI------KAAKRLNSRQARWALFFGRFNFSIS--YRPGSKNIKPDALSR 790
>gi|443918479|gb|ELU38935.1| reverse transcriptase (RNA-dependent DNA polymerase)
domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 1560
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 137/377 (36%), Gaps = 93/377 (24%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L D+ AY +PI PS Q V ++D LY C PFG AS+ +FA+ +
Sbjct: 725 LPEASMAATFDVDAAYRCIPIHPSDQSSTIVAWKDNLYVDHCAPFGAASSNGLFARCGDA 784
Query: 165 IANYLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ L +LG RV+ ++D+ ++ V + Q + NL + WP ++
Sbjct: 785 MLMILEASLGCRVVKWVDNYVI-----VRPPPGFPGGDTSKQDI---YNLALPLGWPWKS 836
Query: 224 CQ---------YLGIMWNPTLDSKSLPLEKQSTI----------QRYLLTLTQI------ 258
+ +LG W S+PL+K+ R L LTQ
Sbjct: 837 SKTKNFAYAFDFLGFYWCIPKREVSIPLKKRDKFLSKICTWLDADRVSLKLTQQLIGSLV 896
Query: 259 ---------QWWSVALHRSSPIFPQ----------------------------------- 274
+ W L R S FP
Sbjct: 897 HCTNVVVEGRAWLAGLIRFSAAFPHEHASRFVSRPKPTYAVHDALWWQNRLASASCTRNI 956
Query: 275 --APQVFVST---DASNS-GWGAIVDNH----SLGGVWSDHQEMWHINLKEMFAVRSALE 324
P F S DAS S G IVDNH L W +I E+ A+ LE
Sbjct: 957 SPPPTAFPSEFFMDASTSFGIAIIVDNHWAAWRLLQGWKSGGR--NIGWAEISALEMTLE 1014
Query: 325 RKLPV-LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIP 383
+ L+D ++ +SDNQ VV + G +++ + ++ +F + + + YI
Sbjct: 1015 AAIAYGLRDSLLHFRSDNQGVV-FAMAAGRSRNLEQNNAIKRIFARSSLFGLRIQTSYIA 1073
Query: 384 GKFNTWADSLSRQKELP 400
+ N AD SR +P
Sbjct: 1074 SEDNP-ADPPSRGMPIP 1089
>gi|301608030|ref|XP_002933605.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1071
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 145/353 (41%), Gaps = 72/353 (20%)
Query: 101 VPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQV 157
+P+ Q+ K+DL AY V IR + + R + +PFGL +AP
Sbjct: 203 IPELFQQIREAKIFSKLDLRGAYNLVRIRKGDEWKTAFRSRYGHFEYLVMPFGLCNAPAT 262
Query: 158 FAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
F L N I + L + VI+YLDD+L+ ++ R R L++ + V LE+
Sbjct: 263 FQHLVNDI--FRDFLDIFVIIYLDDILIFSKTLEEHRRHMRKVFLRLRAHQLFVKLEK-C 319
Query: 218 LWPVQTCQYLGIMWNPT---LDSKSL--------PLEKQST--IQRYLLTLTQIQWWSVA 264
L+ T +LG + +P+ +D K + P +++ +R++ +QI
Sbjct: 320 LFEKTTIDFLGFIISPSGIRMDPKKISSILNWPAPTSRKAVNFYRRFIKNFSQIILPITE 379
Query: 265 LHRSSPIF---PQAPQVF-----------------------VSTDASNSGWGAIVDNHS- 297
L RS+ F QA F + DAS S GAI+
Sbjct: 380 LTRSNFKFVGTSQAQTAFEILKRLFTSAPILRHPDPSLPFTLEVDASESAVGAILSQRVG 439
Query: 298 ----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK--VVLIQSDNQTVV 345
+ ++ + + +E+ A++ A E +L+ +LI +D++ +
Sbjct: 440 LRDELHPVAFFSPKLNKSEQNYDVADRELLAIKLAFEEWRYLLEGARLPILILTDHRN-L 498
Query: 346 SYIHKEGGTKSFKLLREVE---ALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
Y+ +S K LR + ALF + +IT Y PG N D+LSR
Sbjct: 499 EYL------RSAKRLRPRQARWALFFMRFNFHIT----YRPGAKNIKPDALSR 541
>gi|326668550|ref|XP_003198820.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1290
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 152/375 (40%), Gaps = 79/375 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P D LQ F K+DL AY V +R + +
Sbjct: 429 YRGLNDITIKNRYPLPLMSSAFDLLQGARFFTKLDLRNAYHLVRMREGDEWKTAFNTPTG 488
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + R
Sbjct: 489 HFEYLVLPFGLTNAPAVFQALVN---DVLRDMINQFVFVYLDDILIFSSAMQEHVQHVRR 545
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT---LDSKSL-------PLEKQSTIQ 249
+ L + V E+ VQ+ +LG + + +D + P + + +Q
Sbjct: 546 VLQRLLENQLYVKAEKCKFH-VQSVSFLGHIISVEGLRMDPAKVRAVSDWPPPDFRKALQ 604
Query: 250 RYL----------------------LTLTQIQW-WSVA----------LHRSSPIF---P 273
R+L LT T+I++ WSVA L S+PI
Sbjct: 605 RFLGFANFYRRFIRNFGRVAAPLTALTSTRIRFGWSVAAQTAFDHLKSLFTSAPILITPD 664
Query: 274 QAPQVFVSTDASNSGWGAIV-----DNHSLGGVWSDH-----QEMWHINLKEMFAVRSAL 323
A Q V DAS G GA++ DN + H + + + +E+ AVR AL
Sbjct: 665 PARQFVVEVDASEVGVGAVLSQTAQDNKLHPCAYFSHCLSPTERNYDVGNRELLAVRLAL 724
Query: 324 ERKLPVLQDKVV--LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMAR 380
L+ V L+ +D++ + YI ++ K L +A + L R N TL
Sbjct: 725 GEWRHWLEGAAVPFLVWTDHRN-LQYI------QTAKRLNARQARWALFFGRFNFTLS-- 775
Query: 381 YIPGKFNTWADSLSR 395
Y PG N+ D+LSR
Sbjct: 776 YRPGSKNSKPDALSR 790
>gi|326665283|ref|XP_002660991.2| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1573
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 447 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 504
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 505 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 560
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 561 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 618
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 619 TPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 678
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G V S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 679 SQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 738
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 739 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTIS--YRPGSKNIKPDALSR 785
>gi|189239734|ref|XP_001808421.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1002
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP---DFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + + + +P D L+R + +DL Y+ + + P ++ S + +D
Sbjct: 317 YRALNKITVKDRYPLPLIEDCLRRLSGYKYFTSLDLIAGYYQIQMSPESIQYTSFITQDG 376
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF ++ N + LR +V+VYLDD+L+
Sbjct: 377 QYEFLRMPFGLCNAPAVFQRVINTVLGQLR--FTKVLVYLDDILI 419
>gi|189242352|ref|XP_001810024.1| PREDICTED: similar to protease, reverse transcriptase, ribonuclease
H, integrase [Tribolium castaneum]
Length = 1076
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 144/367 (39%), Gaps = 72/367 (19%)
Query: 88 LSLKKFHLINHFR-VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLS-VVYRDTLYCMT 145
+S K + I H + D L+ + KIDL Q Y+ VP+ + + V L+
Sbjct: 294 VSQKDAYPIPHINGILDKLRGAKYFSKIDLKQGYWQVPLAEESKPITAFTVPNRGLFQFK 353
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL SAP F +L + + + G YLDD+++ + + L+
Sbjct: 354 VMPFGLHSAPATFQRLLDRVLGPEMDSG--AFAYLDDIIVLGRTKEEHQENLATVFRKLR 411
Query: 206 SLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTIQRYLLTLTQI 258
+ + N E+ + +YL G+ +P+ L L + ++ L
Sbjct: 412 KAKLTPNWEKCSFGQTR-LEYLGHIVSSQGVSTDPSKVKAILELPPPTNVKELRRFLGIA 470
Query: 259 QWW----------SVALHR--------------------------SSPIF--PQAPQVFV 280
W+ + A++R +P+ P + FV
Sbjct: 471 SWYRKFVPVFSQVAAAVNRLLKKKQKWEWGNEQKEAFEKIKQLLTEAPVLACPDFTKTFV 530
Query: 281 -STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVL 330
TDAS+ G GA + + GG SD Q + KE A+ A+++ P +
Sbjct: 531 LQTDASDLGLGAALIQNLDGGDRVIAYASCSLSDQQTKYSTTEKECLAIVWAIQKMRPYI 590
Query: 331 QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEAL--FDLAVRHNITLMARYIPGKFNT 388
+ +++SD+Q + ++ K+ K +L R + L +D V RY G N
Sbjct: 591 EGYHFVVESDHQP-LKWLMKQPEPKG-RLARWIMTLQQYDFEV--------RYRKGVLNQ 640
Query: 389 WADSLSR 395
AD+LSR
Sbjct: 641 VADALSR 647
>gi|147855864|emb|CAN78624.1| hypothetical protein VITISV_041103 [Vitis vinifera]
Length = 1027
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 373 YQALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVKIAKGDEPKTTCVTRYG 432
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 433 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 475
>gi|326668075|ref|XP_003198730.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1175
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 145/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 448 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 505
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 506 N---DVLRDMIDQFIYVYLDDILIFSHSLEEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 561
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 562 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 619
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 620 VPLTSLTSSKTPFRWTSAAEAAFSKLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 679
Query: 294 DNHSLGG------VWSDH-----QEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S + H + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 680 SQRSASDGKVHPCAYFSHRLSLAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 739
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 740 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSR 786
>gi|147834458|emb|CAN63114.1| hypothetical protein VITISV_031750 [Vitis vinifera]
Length = 127
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L+R + K+DL Y+ V I ++ + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLERARYFTKLDLRSGYYQVRIAEGYEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLKNKIFHPYLDKF---VVVYLDDIVI 107
>gi|88595579|gb|ABD43096.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D LQ KIDL Y H+ IR S + R
Sbjct: 6 YRELNRVTIKNKYPLPRIDDLLDQLQGASIFSKIDLRSGYHHLRIRESDIARTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++D AR
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKCVVVFIDDILIYSKDE---EEHARHL 120
Query: 201 VATLQSLR 208
L+ LR
Sbjct: 121 HIVLEILR 128
>gi|326674090|ref|XP_003200067.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 144/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 505 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 562
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 563 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 618
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 619 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 676
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 677 APLTSLTSSKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 736
Query: 294 DNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 737 SQRSSSDGKIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 796
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 797 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTIS--YRPGSKNIKPDALSR 843
>gi|211925527|dbj|BAG81987.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 489
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 149 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 206
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 207 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 262
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ RA L + +N+++ L+ V + +LG
Sbjct: 263 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLG 301
>gi|326675725|ref|XP_003200413.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1159
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 140/361 (38%), Gaps = 92/361 (25%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 426 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 483
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 484 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 539
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEKQSTIQRYL----------- 252
Q+ Q+LG + W PT DS+ +QR+L
Sbjct: 540 QSVQFLGHTVSVEGMRMDPEKIQAVVNW-PTPDSR-------KALQRFLGFANFYRRFIR 591
Query: 253 -----------LTLTQIQW-WS----VALHRSSPIFPQAP---------QVFVSTDASNS 287
LT ++ + WS A + F AP Q V D S
Sbjct: 592 NFRQLAAPLTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDVSEV 651
Query: 288 GWGAIVDNHS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDK-VV 335
G GAI+ S L G S + + I +E+ AV+ ALE L+ V
Sbjct: 652 GVGAILSQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVP 711
Query: 336 LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLS 394
I S + + YI KS K L +A + L R N ++ Y PG N D+LS
Sbjct: 712 FIVSTDHKNLEYI------KSAKRLNSRQARWALFFGRFNFSI--SYRPGSKNIKPDALS 763
Query: 395 R 395
R
Sbjct: 764 R 764
>gi|313213696|emb|CBY40594.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 117 SQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRV 176
+ Y +P+ ++ + + ++ L FG+ +AP ++ L + N+LR G+++
Sbjct: 10 ASGYHQMPLAAESKKMACFKWGNYIFENNILAFGIPAAPGMYQLLNSVGINFLRQNGIKI 69
Query: 177 IVYLDDLLL------GNQDSVLLRSQARA-----AVATLQSLRWSVNLERSVLWPVQTCQ 225
+YLDD LL N LL + ATL +L VN+++S P Q +
Sbjct: 70 TLYLDDRLLIISPKSENHRKKLLTEEILCKEVWLVAATLVALGGFVNIKKSEFKPTQRIE 129
Query: 226 YLGIMWNPTLDSKSLPLEKQSTIQRYL 252
+LG + + ++ +P + +T+++ +
Sbjct: 130 FLGFILDTNKETVEIPEGRWNTLKKRM 156
>gi|189518493|ref|XP_001922036.1| PREDICTED: hypothetical protein LOC100148166 [Danio rerio]
Length = 922
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+D+S AY + + S +++++V LY LPFG+AS+P +F +
Sbjct: 416 LAGGQKFSKLDMSHAYQQIMLDESAKKYVTVNTHKGLYTYCRLPFGVASSPAIFQRTMEG 475
Query: 165 IANYLRNLGMRVIVYLDDLL--LGNQDSVLLRSQARAAVATLQSLRWS-VNLERSVLWPV 221
I L++ V+VYLDD+L + N + L R L+ L+ S + L+RS
Sbjct: 476 ILQNLKH----VVVYLDDILVTVANDEEHL-----RNLEEVLRRLKSSGLRLKRS----- 521
Query: 222 QTCQYLG 228
C++LG
Sbjct: 522 -KCEFLG 527
>gi|326673841|ref|XP_003200011.1| PREDICTED: hypothetical protein LOC100536704, partial [Danio rerio]
Length = 2339
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 156/395 (39%), Gaps = 82/395 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 496 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTVDGHYEYLVMPFGLANSPSVFQAFVNE 555
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 556 I--FRDMLNKWVIVYIDDILIYSNSLSEHIQHVRAVLKRL--IENQLYAKSSKCEFHQTC 611
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR++ LT
Sbjct: 612 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFMGFANFYRRFIRNFSSVAAPLT 671
Query: 255 L------TQIQWWSVALH---------RSSPIF----PQAPQVFVSTDASNSGWGAIVDN 295
+++W A+ S+PI P+ P V V DASN+G GAI
Sbjct: 672 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFV-VEIDASNTGIGAIRSQ 730
Query: 296 HSL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQT 343
SL + + + + +E+ A+++ALE L+D K I +
Sbjct: 731 RSLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEDAKHPFIVITDHK 790
Query: 344 VVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKE 398
+ YI +S K L +A + L YIPG N AD+LSR E
Sbjct: 791 NLEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSE 843
Query: 399 LPDWHLL--PEVTQHIFAQWGVPEIDLFATANSAA 431
+PD ++ P + I QW + + L A N+ +
Sbjct: 844 IPDEPIIKSPLIVAPI--QWDIDQEILQAAENNPS 876
>gi|211925521|dbj|BAG81984.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 310
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 17 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 74
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 75 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 130
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ RA L + +N+++ L+ V + +LG
Sbjct: 131 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLG 169
>gi|40786843|gb|AAR89934.1| polymerase protein [Duck hepatitis B virus]
Length = 787
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P P+ L++ +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPFNPASSSRLAISDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L + + + + LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNAISHSVCSFLQELGVRINFDKTTPSPVNEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLEK 244
+D + + +E+
Sbjct: 564 ----IDQRYMKIEE 573
>gi|326673018|ref|XP_003199777.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 145/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 452 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 509
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 510 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 565
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQ 259
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 566 QSVQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 623
Query: 260 W-------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
WS A + F AP Q V DAS G GAI+
Sbjct: 624 APLTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 683
Query: 294 DNHS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S L G S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 684 SQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 743
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI KS K L +A + L R N ++ Y PG N D+LSR
Sbjct: 744 HKN-LEYI------KSAKRLNSRQARWALFFGRFNFSI--SYRPGSKNIKPDALSR 790
>gi|270016625|gb|EFA13071.1| hypothetical protein TcasGA2_TC006870 [Tribolium castaneum]
Length = 1488
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 144/367 (39%), Gaps = 72/367 (19%)
Query: 88 LSLKKFHLINHFR-VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLS-VVYRDTLYCMT 145
+S K + I H + D L+ + KIDL Q Y+ VP+ + + V L+
Sbjct: 706 VSQKDAYPIPHINGILDKLRGAKYFSKIDLKQGYWQVPLAEESKPITAFTVPNRGLFQFK 765
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL SAP F +L + + + G YLDD+++ + + L+
Sbjct: 766 VMPFGLHSAPATFQRLLDRVLGPEMDSG--AFAYLDDIIVLGRTKEEHQENLATVFRKLR 823
Query: 206 SLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTIQRYLLTLTQI 258
+ + N E+ + +YL G+ +P+ L L + ++ L
Sbjct: 824 KAKLTPNWEKCSFGQTR-LEYLGHIVSSQGVSTDPSKVKAILELPPPTNVKELRRFLGIA 882
Query: 259 QWW----------SVALHR--------------------------SSPIF--PQAPQVFV 280
W+ + A++R +P+ P + FV
Sbjct: 883 SWYRKFVPVFSQVAAAVNRLLKKKQKWEWGNEQKEAFEKIKQLLTEAPVLACPDFTKTFV 942
Query: 281 -STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVL 330
TDAS+ G GA + + GG SD Q + KE A+ A+++ P +
Sbjct: 943 LQTDASDLGLGAALIQNLDGGDRVIAYASCSLSDQQTKYSTTEKECLAIVWAIQKMRPYI 1002
Query: 331 QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEAL--FDLAVRHNITLMARYIPGKFNT 388
+ +++SD+Q + ++ K+ K +L R + L +D V RY G N
Sbjct: 1003 EGYHFVVESDHQP-LKWLMKQPEPKG-RLARWIMTLQQYDFEV--------RYRKGVLNQ 1052
Query: 389 WADSLSR 395
AD+LSR
Sbjct: 1053 VADALSR 1059
>gi|147797863|emb|CAN71937.1| hypothetical protein VITISV_000027 [Vitis vinifera]
Length = 351
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
LY +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 LYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|326680732|ref|XP_003201604.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1149
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 145/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 414 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 471
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 472 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 527
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQ 259
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 528 QSVQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 585
Query: 260 W-------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
WS A + F AP Q V DAS G GAI+
Sbjct: 586 APLTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 645
Query: 294 DNHS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S L G S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 646 SQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 705
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI KS K L +A + L R N ++ Y PG N D+LSR
Sbjct: 706 HKN-LEYI------KSAKRLNSRQARWALFFGRFNFSI--SYRPGSKNIKPDALSR 752
>gi|12958103|gb|AAK07487.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 1304
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 491 SKGDWRPCGD--YRSLNYATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 548
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 549 DIPKTAITTPFGLFEFTRIPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 604
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ RA L + +N+++ L+ V + +LG
Sbjct: 605 SPTEHAAHLRAVFERLSTYSIRLNIDK-CLFGVTSLDFLG 643
>gi|326663868|ref|XP_003197683.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1187
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 145/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 452 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 509
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 510 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 565
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQ 259
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 566 QSVQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 623
Query: 260 W-------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
WS A + F AP Q V DAS G GAI+
Sbjct: 624 APLTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 683
Query: 294 DNHS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S L G S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 684 SQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 743
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI KS K L +A + L R N ++ Y PG N D+LSR
Sbjct: 744 HKN-LEYI------KSAKRLNSRQARWALFFGRFNFSIS--YRPGSKNIKPDALSR 790
>gi|397344|emb|CAA52700.1| polymerase [Duck hepatitis B virus]
Length = 836
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR- 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + +
Sbjct: 493 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISP 552
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 553 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 610
>gi|326673157|ref|XP_003199804.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1188
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 146/356 (41%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 447 LQGANFFTKLDLRNAYDLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 504
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 505 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 560
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 561 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 618
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 619 TPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASKVGVGAIL 678
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G V S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 679 SQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 738
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 739 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSR 785
>gi|301627834|ref|XP_002943073.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1474
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + IR + + RD
Sbjct: 233 YRGLNKITVKNRYPLPLISELFDRVKGATIFSKLDLRGAYNLIRIREGDEWKTAFNTRDG 292
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N I L LG V+VYLDD+L+ + R +
Sbjct: 293 HYEYLVMPFGLCNAPAVFQELVNDIFRDL--LGRSVVVYLDDILIYSNSLSDHRVHVQEV 350
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ L+ LE+ + V + +LG +
Sbjct: 351 LLRLRQNHLYAKLEKCI-SEVSSVHFLGFI 379
>gi|62082811|gb|AAX62233.1| reverse transcriptase [Magnolia grandiflora]
Length = 117
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + + + +P D L + K+DL Y+ V I P + ++V R
Sbjct: 10 YRALNKVTVKDRYPIPLVADLFDRLGGARWFTKLDLRSGYWQVRIAPGDEAKTAMVTRYG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F +L N + A Y+ V+VYLDDLL+
Sbjct: 70 AYEFLVMPFGLTNAPATFCRLMNGVLAGYIDEF---VVVYLDDLLI 112
>gi|440792212|gb|ELR13440.1| hypothetical protein ACA1_244900 [Acanthamoeba castellanii str.
Neff]
Length = 235
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + DFL+ +D ++ HV + P HQ L+ +R T Y PF L ++P +F +
Sbjct: 149 DLSDQCDFLITLDFQDSFHHVEVHPRHQHLLAFHWRGTHYTFQACPFSLNTSPWIFTRA- 207
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSV 191
L G++ +VY+D++++ D
Sbjct: 208 ------LAVRGIQCMVYMDNMIIMAPDKA 230
>gi|147835239|emb|CAN67792.1| hypothetical protein VITISV_001313 [Vitis vinifera]
Length = 1414
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 693 YRALNKVTVKNKYPIPLIADLFDQLGRASYFTKLDLRLGYYQVRIVEGDESKTTCVTRYG 752
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 753 SYEFLVMPFGLTNAPATFCTLVNKIFHPYLDKF---VVVYLDDIVI 795
>gi|20152590|emb|CAD29542.1| pol [Kazachstania exigua]
Length = 1181
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 143/360 (39%), Gaps = 83/360 (23%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
V D L K+DL Y V I Q + Y +PFGL +AP F +
Sbjct: 312 VLDQLSGATIFSKLDLISGYHQVAIADEDQYKTAFTTHRGQYSWRVMPFGLTNAPATFQR 371
Query: 161 LTNWI-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
L N++ +Y+ + +VYLDD+L+ +++ + L+ + + +
Sbjct: 372 LMNYVLRDYINKI---CVVYLDDILIYSKNEKEHSEHVSTIINVLRKHQLYAKKSKCEFY 428
Query: 220 PVQTCQYLGIMWNPTLDSKSLPLEKQSTI------------------------QRYL--- 252
V Q+LG L +K + +K+ + +R++
Sbjct: 429 -VPKIQFLG----HELSAKGITPDKEKILAIKDWPTPKTYKDAQSFIGLAGYYRRFIKDF 483
Query: 253 ---------LTLTQIQWWSVA------LHR---SSPI---FPQAPQVFVSTDASNSGWGA 291
L +I+W L R ++PI F + Q+ ++TDAS++ GA
Sbjct: 484 SYIAKPLHQLAAQKIKWTDECKESLDKLKRQLSTAPIIIPFDRTKQIVLTTDASSTAIGA 543
Query: 292 IVDNHSLGGVWS--------------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVLI 337
+++ + G + S D++ W I KE++AV A ++ L ++I
Sbjct: 544 VLELYGKGTLKSELVGVVAYLSHLLRDNELNWPIRDKELYAVIFAFKKWRHYLAGTHIII 603
Query: 338 QSDNQTVVSYIHKEGGTKSFKLL--REVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
++D+ + + Y + +L R++ FD + +YI G N AD+LSR
Sbjct: 604 KTDHHS-LQYFKTSVLDSNLRLARWRDILEEFDYEI--------QYIKGSTN-HADALSR 653
>gi|326670252|ref|XP_003199174.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1094
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 153/392 (39%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 465 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTVDGHYEYLVMPFGLANSPSVFQAFVNE 524
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 525 I--FRDMLNKWVIVYIDDILIYSNSLSEHIQHVRAVLKRL--IENQLYAKSSKCEFHQTC 580
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 581 ISFLGYIISPEGVAMDQQKVDSVTQWPQPKTIRQLQRFLGFANFYRRFIRNFSSVAAPLT 640
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 641 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 700
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + ++ + + +E+ A+++ALE L+ K I +
Sbjct: 701 SLVNKKLHPCAFYSRKLNSAEQNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 760
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 761 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEI 813
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ QW + + L A N+ +
Sbjct: 814 PDEPIIKSPLIVAPIQWDIDQEILQAAENNPS 845
>gi|326665569|ref|XP_003198070.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1328
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 149/384 (38%), Gaps = 86/384 (22%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 468 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 527
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ R V VYLDD+L+ + + R
Sbjct: 528 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNRFVFVYLDDILIFSPSPQVHTQHVRQ 584
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V Q+ +LG + + PT DS+ L
Sbjct: 585 VLQRLLENQLYVKAEKCVFH-AQSVPFLGFIISAGEIQADPCKVRAVAEWPTPDSRKA-L 642
Query: 243 EK----QSTIQRYLLTLTQIQWWSVALHRSSPIFP-------------------QAP--- 276
++ + +R++ QI AL +SP P AP
Sbjct: 643 QRFLGFANFYRRFIRNFGQIAAPLTAL--TSPKVPFKWKADAQEAFDKLKSRFISAPVLS 700
Query: 277 ------QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAV 319
Q V DAS+ G GA++ S G V S + + I +E+ AV
Sbjct: 701 IPDPERQFIVEVDASDVGVGAVLSQRSCLDGKVHPCAFFSHRLSPSERNYDIGNRELLAV 760
Query: 320 RSALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNIT 376
R AL L+ L+ +D++ + YI +S K L +A + L R N T
Sbjct: 761 RLALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSAKRLSSRQARWALFFGRFNFT 813
Query: 377 LMARYIPGKFNTWADSLSRQKELP 400
L Y PG N D+LSR E P
Sbjct: 814 LS--YRPGSKNIKPDALSRLFEAP 835
>gi|326670216|ref|XP_003199163.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1325
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 154/393 (39%), Gaps = 78/393 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 380 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTVDGHYEYLVMPFGLANSPSVFQAFVNE 439
Query: 165 IANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I R++ R VIVY+DD+L+ + RA + L + + + S QT
Sbjct: 440 I---FRDMLNRWVIVYIDDILIYSNSLSEHIQHVRAVLKRL--IENQLFAKSSKCEFHQT 494
Query: 224 C-QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------L 253
C +LG + +P +D + + Q +QR+L L
Sbjct: 495 CISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPL 554
Query: 254 TL------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDN 295
T +++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 555 TAMVKANNARLKWNPDAVRAFTQLKTHFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQ 614
Query: 296 HSL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQT 343
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 615 RSLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAIKAALEEWRHWLEGAKHPFIVITDHK 674
Query: 344 VVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKE 398
+ YI +S K L +A + L YIPG N AD+LSR E
Sbjct: 675 NLEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSE 727
Query: 399 LPDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
+PD ++ QW + + L A N+ +
Sbjct: 728 IPDEPIIKSPLIVAPIQWDIDQEILQAAENNPS 760
>gi|307214533|gb|EFN89530.1| hypothetical protein EAI_13359 [Harpegnathos saltator]
Length = 117
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 260 WWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAV 319
W S L +PI Q + V +DAS +GWG + + G W++ + HIN E+
Sbjct: 1 WESHILRSVNPIRQQQYSLEVFSDASMTGWGTACNGETTCGTWNEFERKSHINYLELKGA 60
Query: 320 RSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREV 363
AL+ + +L++ DN T +SYI++ GG + F+ L E+
Sbjct: 61 FYALKCFANNKHNCEILLRIDNTTAISYINRIGGIR-FQKLTEI 103
>gi|357601544|gb|EHJ63061.1| hypothetical protein KGM_20630 [Danaus plexippus]
Length = 90
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 374 NITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFAT 426
NI L +++PG NT AD LSR + +WH+ T +F+ WG P++DLFA+
Sbjct: 8 NIVLHLQHLPGLLNTEADRLSRNRAAVEWHITDAETSRLFSLWGTPDLDLFAS 60
>gi|326668118|ref|XP_003198743.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1268
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 152/392 (38%), Gaps = 86/392 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 389 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 448
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N N LR++ R V VYLDD+L+ + + R
Sbjct: 449 HFEYRVLPFGLTNAPAVFQALVN---NVLRDMVNRFVFVYLDDILIFSPSLKVHTQHVRQ 505
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V VQ+ +LG + + PT DS+ L
Sbjct: 506 VLQRLLENQLYVKAEKCVFH-VQSVSFLGFIISAGEIQADPCKVKAVAEWPTPDSRKA-L 563
Query: 243 EK----QSTIQRYLLTLTQIQWWSVALHRSSPIFP-------------------QAP--- 276
++ + +R++ QI AL +SP P AP
Sbjct: 564 QRFLGFANFYRRFIRNFGQIAAPLTAL--TSPKVPFKWEVDAQEAFDKLKSRFVSAPVLS 621
Query: 277 ------QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAV 319
Q V DAS+ G GA++ S G V + + + I +E+ AV
Sbjct: 622 IPDPERQFIVEVDASDVGVGAVLSQRSRLDGKVHPCAFFSHRLNPSERNYDIGNRELLAV 681
Query: 320 RSALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNIT 376
R AL L+ L+ +D++ + YI +S + L +A + L R N T
Sbjct: 682 RLALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSARRLSSRQARWALFFGRFNFT 734
Query: 377 LMARYIPGKFNTWADSLSRQKELPDWHLLPEV 408
L Y PG N D+LSR E P P+
Sbjct: 735 LS--YRPGSKNIKPDALSRLFEAPGEREPPDT 764
>gi|326666973|ref|XP_003198437.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1107
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 154/392 (39%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 415 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 474
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 475 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IQNQLYAKSSKCEFHQTC 530
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 531 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 590
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 591 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 650
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 651 SLVNKKLHPCAFYSRKLNSAERNYDLGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 710
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 711 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEI 763
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ + QW + + L A N+ +
Sbjct: 764 PDEPIIKDPLIVAPIQWDIEQEILQAAENNPS 795
>gi|326676554|ref|XP_003200607.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1249
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 149/384 (38%), Gaps = 86/384 (22%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 389 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIRKGDEWKTAFNTPTG 448
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ R V VYLDD+L+ + + R
Sbjct: 449 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNRFVFVYLDDILIFSPSPQVHTQHVRQ 505
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V Q+ +LG + + PT DS+ L
Sbjct: 506 VLQRLLENQLYVKAEKCVFH-AQSVPFLGFIISAGEIQADPCKVRAVAEWPTPDSRKA-L 563
Query: 243 EK----QSTIQRYLLTLTQIQWWSVALHRSSPIFP-------------------QAP--- 276
++ + +R++ QI AL +SP P AP
Sbjct: 564 QRFLGFANFYRRFIRNFGQIAAPLTAL--TSPKVPFKWKADAQEAFDKLKSRFISAPVLS 621
Query: 277 ------QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAV 319
Q V DAS+ G GA++ S G V S + + I +E+ AV
Sbjct: 622 IPDPERQFIVEVDASDVGVGAVLSQRSCLDGKVHPCAFFSHRLSPSERNYDIGNRELLAV 681
Query: 320 RSALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNIT 376
R AL L+ L+ +D++ + YI +S K L +A + L R N T
Sbjct: 682 RLALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSAKRLSSRQARWALFFGRFNFT 734
Query: 377 LMARYIPGKFNTWADSLSRQKELP 400
L Y PG N D+LSR E P
Sbjct: 735 LS--YRPGSKNIKPDALSRLFEAP 756
>gi|341900224|gb|EGT56159.1| hypothetical protein CAEBREN_11698 [Caenorhabditis brenneri]
Length = 1285
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL+ AY + ++ L + L+C LPFG+ +AP +F + +
Sbjct: 566 LNGGLYFTQIDLADAYLQCEVDEQAKQLLVINTHKGLFCYNRLPFGIKAAPGIFQQFMDK 625
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L YLDDL++ S+ A + +Q + + +E+
Sbjct: 626 LINGLDGTS----AYLDDLIVTGSTIEEHNSRVHALMQKIQDFGFRIRMEKCSFLQ-HEI 680
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 681 KYLGFVIN 688
>gi|341885187|gb|EGT41122.1| hypothetical protein CAEBREN_31824 [Caenorhabditis brenneri]
Length = 1208
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL+ AY + ++ L + L+C LPFG+ SAP +F +
Sbjct: 401 LNGGLYFSQIDLADAYLQCEVDEQAKQLLVINTHRGLFCYNRLPFGIKSAPGIFQSFMDR 460
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L YLDDL++ + A + LQ + + +E+
Sbjct: 461 LINGLDGTS----AYLDDLIVTGSSIEEHNRRVHAVMQKLQEFGFRIRMEKCSFLQ-HEI 515
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 516 KYLGFIIN 523
>gi|313215817|emb|CBY16360.1| unnamed protein product [Oikopleura dioica]
Length = 813
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 30/263 (11%)
Query: 15 LKRAI--GLLE---KREIWDVSTLISWISDHPPN-QDSFFEVARHTAILLLLCSGRRVHD 68
LK+A+ G+LE K +I DVS I W + N QD F +AI+++ SG
Sbjct: 195 LKKAVKLGVLEHIPKAKIKDVSE-IKWEEELRKNPQDRFVTPLLTSAIIIVPKSGPEQFR 253
Query: 69 LTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPS 128
+ DG AF + HL + FL++G L KID ++H+ +
Sbjct: 254 VCF-----DGSVMKELEAFK--QPCHLDTCKQALQFLKKGMLLTKIDDKSGFYHMKLDNF 306
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL--- 185
+ Y + FG+ AP + + + LR G +YLDD L
Sbjct: 307 SRNMACCEYGGQTFRYKGAVFGIPKAPGAYQTMNSVPMCLLRQNGFHCFLYLDDRLFLTM 366
Query: 186 ---GNQDSVLLRSQARAAVA------TLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLD 236
++ L+R R +A ++ + +N +SVL P Q ++LG N
Sbjct: 367 PESKAEEQALIRGD-RVPLAPFLGLLSITANGTYINRPKSVLKPTQKMEFLGFGLNTIKG 425
Query: 237 SKSLPLEKQSTIQRYLLTLTQIQ 259
+ +P EK +R+ + + I+
Sbjct: 426 TIRIPTEK---FERFKIEASAIR 445
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 277 QVFVSTDASNSGWGAIVDNHSLGGV--WSDHQEMWHIN--LKEMFAVRSALERKLPVLQD 332
+V V TDASN G +++ + W + + N LKE +AV AL++ + ++
Sbjct: 528 EVKVFTDASNYAGGVTIESEDINVSIPWEEGSAIARDNIFLKEAYAVLHALQKYGHLFKN 587
Query: 333 KVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADS 392
K+V +DN VV+ H G S L R + + + A H I L ++ + AD+
Sbjct: 588 KLVHFLNDNMVVVNCFHV-GSKSSPALNRIIRKIHEAAEEHLIALKVSWV-STLDQKADA 645
Query: 393 LSRQKELPDWHLLPEVTQHIFAQWGVP-EIDLFATANSA 430
SR+ + + V + I + G+ +DLF+TA +A
Sbjct: 646 ASRETDCKEAIFRKTVFEAIQIKLGLTFSLDLFSTAENA 684
>gi|156059450|ref|XP_001595648.1| hypothetical protein SS1G_03737 [Sclerotinia sclerotiorum 1980]
gi|154701524|gb|EDO01263.1| hypothetical protein SS1G_03737 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1901
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ K+D+ QA+ + + P+ + + + R Y LPFGL + P + + N
Sbjct: 967 LQGAKIYTKLDIRQAFHRIRMDPASEEYTTFRTRYGAYKCKVLPFGLTNGPATYQRYMND 1026
Query: 165 IA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I +YL + YLDD+L+ ++D + R + L+ +L++S + V
Sbjct: 1027 ILFDYLDDF---CTAYLDDILIYSEDPSEHDTHVRKVLQRLRDAGLQADLKKSE-FDVTK 1082
Query: 224 CQYLGIMWNPT 234
+YLG + + T
Sbjct: 1083 TKYLGFIISTT 1093
>gi|2133581|pir||S68306 pol polyprotein, truncated - red flour beetle retrotransposon Woot
gi|805077|gb|AAC47271.1| protease, reverse transcriptase and RNase H [Tribolium castaneum]
Length = 712
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 90 LKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPF 149
L++FH I ++ IDL +Y+ +P+ P +++ + +Y Y LPF
Sbjct: 382 LRRFHEIR------------YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPF 429
Query: 150 GLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR 208
GL +A F++ + + +R V+ Y+DDLL+ ++ R L+ R
Sbjct: 430 GLKTAVGSFSRAMDVVLGTEVREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQAR 486
Query: 209 WSVNLERS 216
++NLE+S
Sbjct: 487 MTINLEKS 494
>gi|406702754|gb|EKD05684.1| putative retrotransposon nucleocapsid protein [Trichosporon asahii
var. asahii CBS 8904]
Length = 1367
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K N + +P D L+ + KIDL AY + I+P + + R
Sbjct: 426 YRALNKITRKNRYPLPLIQESLDRLKTAKYFTKIDLRAAYNLIRIKPGDEWKTAFRTRYG 485
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
LY +PFGL +AP F L N + +YL N VIVYLDD+L + ++
Sbjct: 486 LYEYLVMPFGLTNAPASFQYLINDVLRDYLDNF---VIVYLDDIL------IFSKTHEEH 536
Query: 200 AVATLQSLRWSVNLERSVLW-PVQTCQYL 227
Q L+ LE + LW + C++
Sbjct: 537 VTHVKQVLK---RLEDNSLWAKAEKCEFF 562
>gi|32492194|emb|CAE03534.1| OSJNBa0061C06.22 [Oryza sativa Japonica Group]
gi|39545591|emb|CAE02835.3| OSJNBa0014F04.1 [Oryza sativa Japonica Group]
Length = 1450
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 152/365 (41%), Gaps = 52/365 (14%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 563 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 622
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V+++D+L+ +Q + R
Sbjct: 623 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFINDILIYSQSEEDHQHHLRLV 680
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLE----------KQSTIQR 250
+ L+ + L + W + ++LG + + +K + ++ KQ
Sbjct: 681 LGRLREHQLYAKLSKCEFW-LSEVKFLGHV----ISAKGVAVDPETVTAVTNWKQPKTVT 735
Query: 251 YLLTLTQIQWWSVALHR----------SSP--IFPQAPQVF-VSTDASNSGWGAIV--DN 295
LL + WS + SSP I P + F V DAS G G ++ D
Sbjct: 736 QLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDNHKDFMVYCDASRQGLGCVLMQDG 795
Query: 296 HSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEG 352
H + H+ + + E+ AV AL+ L I +D+++ + YI
Sbjct: 796 HVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKS-LKYIF--- 851
Query: 353 GTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLL---PEVT 409
T+S LR+ L +L +++ + Y PGK N AD+LSR+ ++ PE+
Sbjct: 852 -TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVVADALSRKGHCNTLNVRGIPPELN 907
Query: 410 QHIFA 414
Q + A
Sbjct: 908 QQMEA 912
>gi|13559346|dbj|BAB40833.1| reverse transcriptase [Spinacia oleracea]
Length = 143
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+D + +P+ P Q S V LYC +PFGL ++P F +L N + + LG
Sbjct: 39 MDAYSGFHQIPLWPDDQEKTSFVTEQGLYCYKVMPFGLKNSPATFQRLVNTV--FSCQLG 96
Query: 174 MRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
+ Y+DDL++ ++ + R TL+ + +N ++ V
Sbjct: 97 RNIEAYIDDLIVKSKQREEHLADLRETFETLRKYQMRLNPKKCVF 141
>gi|156052661|ref|XP_001592257.1| hypothetical protein SS1G_06497 [Sclerotinia sclerotiorum 1980]
gi|154704276|gb|EDO04015.1| hypothetical protein SS1G_06497 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1582
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ K+D+ QA+ + + P+ + + + R Y LPFGL + P + + N
Sbjct: 967 LQGAKIYTKLDIRQAFHRIRMDPASEEYTTFRTRYGAYKCKVLPFGLTNGPATYQRYMND 1026
Query: 165 IA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I +YL + YLDD+L+ ++D + R + L+ +L++S + V
Sbjct: 1027 ILFDYLDDF---CTAYLDDILIYSEDPSEHDTHVRKVLQRLRDAGLQADLKKSE-FDVTK 1082
Query: 224 CQYLGIMWNPT 234
+YLG + + T
Sbjct: 1083 TKYLGFIISTT 1093
>gi|365987588|ref|XP_003670625.1| hypothetical protein NDAI_0F00630 [Naumovozyma dairenensis CBS 421]
gi|343769396|emb|CCD25382.1| hypothetical protein NDAI_0F00630 [Naumovozyma dairenensis CBS 421]
Length = 1133
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 140/351 (39%), Gaps = 71/351 (20%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ K+DL Y VPI + + + + Y +PFGL +AP F +L
Sbjct: 274 DQLRGATIFSKLDLVSGYHQVPIAEEDRYKTAFITQRGQYQWNVMPFGLTNAPATFQRLM 333
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR+ +G IVYLDD+L ++ + R + L++ + + +
Sbjct: 334 NHV---LRDYIGEFCIVYLDDILNYSKTNEEHIKHIRKIMEALRAHHLFAKKSKCSFF-L 389
Query: 222 QTCQYLGIMWNPT------------------LDSKSLP------------LEKQSTIQRY 251
+LG + N T D+KS ++ STI +
Sbjct: 390 HQVGFLGHVINATGIHSDPEKIECIKNWIAPKDNKSCQRFLGLIGYYRRFIKDFSTIAKP 449
Query: 252 LLTLT-----QIQW---WSVALHRSSPIFPQAP---------QVFVSTDASNSGWGAIVD 294
L +I+W A + +AP V V+TDAS++ G ++
Sbjct: 450 LREYANDKSKKIKWHEQQEFAFEKLKRALLEAPVLKPFDNNLDVVVTTDASDTAIGGTLE 509
Query: 295 NHSLGGVWS----------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTV 344
+ G + H+ W I KE FA+ LE+ L K + +D+Q+
Sbjct: 510 LYKDGKFYGVVAYMSKALHGHELNWPIREKEFFAIVCCLEKWRHYLLGKKFKLYTDHQS- 568
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ Y+ E +SFKL + +D +N ++ +I GK N D+LSR
Sbjct: 569 LKYVLTE---RSFKL--RLARWWDDLADYNFKII--HIKGK-NNHVDALSR 611
>gi|156062082|ref|XP_001596963.1| hypothetical protein SS1G_01156 [Sclerotinia sclerotiorum 1980]
gi|154696493|gb|EDN96231.1| hypothetical protein SS1G_01156 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1811
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ K+D+ QA+ + + P+ + + + R Y LPFGL + P + + N
Sbjct: 877 LQGAKIYTKLDIRQAFHRIRMDPASEEYTTFRTRYGAYKCKVLPFGLTNGPATYQRYMND 936
Query: 165 IA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I +YL + YLDD+L+ ++D + R + L+ +L++S + V
Sbjct: 937 ILFDYLDDF---CTAYLDDILIYSEDPSEHDTHVRKVLQRLRDAGLQADLKKSE-FDVTK 992
Query: 224 CQYLGIMWNPT 234
+YLG + + T
Sbjct: 993 TKYLGFIISTT 1003
>gi|88595499|gb|ABD43056.1| reverse transcriptase [Orobanche cernua var. cernua]
Length = 143
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVSSKIDLRSGYYQLRVKESDVSKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFVQLMNKV--FIEYLDKFVVVFIDDILIYSKNEEEHARHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + V W
Sbjct: 124 LDILRTERLYAKFSKCVFW 142
>gi|326664009|ref|XP_003197710.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1214
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 143/354 (40%), Gaps = 78/354 (22%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ +F K+DL AY V IRP + + + LPFGL++AP VF L N
Sbjct: 393 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVN- 451
Query: 165 IANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR++ + I VYLDD+L+ + R + L V E+ V Q+
Sbjct: 452 --DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-AQS 508
Query: 224 CQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQW- 260
Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 509 VQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLAAP 566
Query: 261 ------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIVDN 295
WS A + F AP Q V DAS G GAI+
Sbjct: 567 LTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQ 626
Query: 296 HS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQ 342
S L G S + + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 627 RSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHK 686
Query: 343 TVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI K+ K L +A + L R N ++ Y PG N D+LSR
Sbjct: 687 N-LEYI------KAAKRLNSRQARWALFFGRFNFSIS--YRPGSKNIKPDALSR 731
>gi|341896871|gb|EGT52806.1| hypothetical protein CAEBREN_25935 [Caenorhabditis brenneri]
Length = 1382
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL+ AY + ++ L + L+C LPFG+ +AP +F + +
Sbjct: 566 LNGGLYFTQIDLADAYLQCEVDEQAKQLLVINTHKGLFCYNRLPFGIKAAPGIFQQFMDK 625
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L YLDDL++ S+ A + +Q + + +E+
Sbjct: 626 LINGLDGTS----AYLDDLIVTGSTIEEHNSRVHALMQKIQDFGFRIRMEKCSFLQ-HEI 680
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 681 KYLGFVIN 688
>gi|5001453|gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 949
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHV 123
L + +DG F+ D + L K + N + +P D L + KIDL+ Y +
Sbjct: 195 LFVKKKDGSFRLCID--YRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQI 252
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
PI P+ R + R + +PFGL +AP F K+ N + + L VI+++DD+
Sbjct: 253 PIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGV--FRDFLDEFVIIFIDDI 310
Query: 184 LLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
L+ ++ + RA + L+ L + W ++ +LG
Sbjct: 311 LVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQ-RSVGFLG 354
>gi|66828827|ref|XP_647767.1| hypothetical protein DDB_G0267212 [Dictyostelium discoideum AX4]
gi|60475916|gb|EAL73843.1| hypothetical protein DDB_G0267212 [Dictyostelium discoideum AX4]
Length = 687
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 136 VYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRS 195
V++ + Y +PFGL++AP++F L + LR++ + VI YLDDLL+ S
Sbjct: 264 VWKGSHYRWKTMPFGLSTAPRIFTMLLRPLLRMLRDINVSVIAYLDDLLIVGSTKEECIS 323
Query: 196 QARAAVATLQSLRWSVNLERSVLWPVQTCQYL 227
+ + L L + +NLE+SVL P Q+ L
Sbjct: 324 NLKKTIDLLVKLGFKLNLEKSVLEPTQSITLL 355
>gi|326664909|ref|XP_003197912.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1225
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 151/373 (40%), Gaps = 87/373 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 447 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 504
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 505 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKYVFH-A 560
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 561 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 618
Query: 259 -------------QWWS---VALHRSSPIFPQAPQVF---------VSTDASNSGWGAIV 293
+W S A + F AP +F V DAS G GAI+
Sbjct: 619 TPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILFAPDPSRQFVVEVDASEVGVGAIL 678
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDN 341
S G V S + + I +E+ AV+ ALE L+ V I +
Sbjct: 679 SQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGLGVPFIVWTD 738
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR----- 395
+ YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 739 HKNLEYI------RSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSRLFDPS 790
Query: 396 -QKELPDWHLLPE 407
+K PD +LP+
Sbjct: 791 DRKSSPD-SVLPQ 802
>gi|326668476|ref|XP_003198810.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1174
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 145/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 452 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 509
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 510 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 565
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQ 259
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 566 QSVQFLGHIVSVEGMRMDPEKIQAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 623
Query: 260 W-------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
WS A + F AP Q V DAS G GAI+
Sbjct: 624 APLTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAIL 683
Query: 294 DNHS-LGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S L G S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 684 SQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 743
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI K+ K L +A + L R N ++ Y PG N D+LSR
Sbjct: 744 HKN-LEYI------KAAKRLNSRQARWALFFGRFNFSIS--YRPGSKNIKPDALSR 790
>gi|326673520|ref|XP_003199907.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1400
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 153/392 (39%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 426 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 485
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 486 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IKNQLYAKSSKCEFHQTC 541
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 542 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 601
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 602 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGVGAILSQR 661
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 662 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 721
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 722 LEYI------RSCKRLNPRQARWALFFT-RFDFQVTYIPGSKNIKADALSRLSDDETSEI 774
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ QW + + L A N+ +
Sbjct: 775 PDEPIIKSPLIVAPIQWDIDQEILQAAENNPS 806
>gi|169116561|gb|ACA42581.1| polymerase [Duck hepatitis B virus]
Length = 841
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 496 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 555
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW--PVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 556 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVPVNEIRFLG 615
Query: 229 IMWNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 616 YQ----IDQKYMKIEE 627
>gi|341878910|gb|EGT34845.1| hypothetical protein CAEBREN_31323 [Caenorhabditis brenneri]
Length = 1387
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL+ AY + ++ L + L+C LPFG+ SAP +F +
Sbjct: 571 LNGGLYFSQIDLADAYLQCEVDEQAKQLLVINTHRGLFCYNRLPFGIKSAPGIFQSFMDR 630
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L YLDDL++ + A + LQ + + +E+
Sbjct: 631 LINGLDGTS----AYLDDLIVTGSSIEEHNHRVHAVMQKLQEFGFRIRMEKCSFLQ-HEI 685
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 686 KYLGFIIN 693
>gi|156044646|ref|XP_001588879.1| hypothetical protein SS1G_10427 [Sclerotinia sclerotiorum 1980]
gi|154694815|gb|EDN94553.1| hypothetical protein SS1G_10427 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1170
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ K+D+ QA+ + + P+ + + + R Y LPFGL + P + + N
Sbjct: 236 LQGAKIYTKLDIRQAFHRIRMDPASEEYTTFRTRYGAYKCKVLPFGLTNGPATYQRYMND 295
Query: 165 IA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I +YL + YLDD+L+ ++D + R + L+ +L++S + V
Sbjct: 296 ILFDYLDDF---CTAYLDDILIYSEDPSEHDTHVRKVLQRLRDAGLQADLKKSE-FDVTK 351
Query: 224 CQYLGIMWNPT 234
+YLG + + T
Sbjct: 352 TKYLGFIISTT 362
>gi|326669453|ref|XP_003199018.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1375
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 149/386 (38%), Gaps = 82/386 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY V I+ + + Y +PFGL +AP VF
Sbjct: 540 EILQGATIFTKLDLRNAYHLVRIKEGDEWKTAFNTPTGHYEYQVMPFGLVNAPAVFQAFI 599
Query: 163 NWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR + R V VYLDD+L+ + R ++ L R V LE+S V
Sbjct: 600 N---DVLREMLNRFVFVYLDDILIFSSSYEEHVQHVRQVLSQLLRHRLFVKLEKSEFH-V 655
Query: 222 QTCQYLGIM------------------WNPTLDSKSLP------------LEKQSTIQRY 251
+LG + W K + + S+I
Sbjct: 656 SKVSFLGFIVSKCSLQMDPGKIKAVLDWPQPCSVKEVQRFLGFANFYRRFIRGFSSIAEP 715
Query: 252 LLTLTQ-----IQWWSVA---------LHRSSPIF----PQAPQVFVSTDASNSGWGAIV 293
L LT+ W +A L S+PI P+ P V V DAS+ G GA++
Sbjct: 716 LTALTKKTAKSFVWTEMANKAFNRLKSLFTSAPILALPDPELPFV-VEVDASDIGIGAVL 774
Query: 294 DNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSD 340
S L + Q + I +E+ AV+ ALE L+ LI +D
Sbjct: 775 SQRSKTDNKLHPCAYLSHRLTPAQRNYDIGNRELLAVKVALEEWRHWLEGAKHPFLIWTD 834
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKEL 399
++ ++YI + K L +A + L R + TL Y PG N+ D+LSRQ
Sbjct: 835 HKN-LTYI------REAKRLNSRQARWALFFNRFDFTLS--YRPGSKNSKPDALSRQFGS 885
Query: 400 PDWHLLPEV---TQHIFA--QWGVPE 420
D PE+ T + QWG+ E
Sbjct: 886 LDSETTPELIIPTSRVVGAIQWGIEE 911
>gi|189242365|ref|XP_001809905.1| PREDICTED: similar to protease, reverse transcriptase and RNase H
[Tribolium castaneum]
Length = 1394
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANY 168
++ IDL +Y+ +P+ P +++ + +Y Y LPFGL +A F++ + +
Sbjct: 626 YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTE 685
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+R V+ Y+DDLL+ ++ R L+ R ++NLE+S
Sbjct: 686 VREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKS 730
>gi|270016119|gb|EFA12567.1| hypothetical protein TcasGA2_TC004196 [Tribolium castaneum]
Length = 1635
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 90 LKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPF 149
L++FH I ++ IDL +Y+ +P+ P +++ + +Y Y LPF
Sbjct: 859 LRRFHGIR------------YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPF 906
Query: 150 GLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR 208
GL +A F++ + + +R V+ Y+DDLL+ ++ R L+ R
Sbjct: 907 GLKTAVGSFSRAMDVVLGTEVREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQAR 963
Query: 209 WSVNLERS 216
++NLE+S
Sbjct: 964 MTINLEKS 971
>gi|358056390|dbj|GAA97679.1| hypothetical protein E5Q_04357 [Mixia osmundae IAM 14324]
Length = 668
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 123/309 (39%), Gaps = 55/309 (17%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVF---AKLTN 163
+G +L+K+DL AY VP+R + + L +R Y T LPF L SAP F A+ +
Sbjct: 64 KGCWLIKLDLEDAYHQVPVRLADRHLLGFEWRGEQYMSTRLPFELRSAPYAFNLLAEGLH 123
Query: 164 WIANYLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ-SLRWSVNLERSVL-WP 220
WI G ++ YLDD L+ +V A LQ + + L+ + L P
Sbjct: 124 WILERCALPAGRKIRHYLDDFLIVLPRTVSEEEARGVAHRALQIGEQLGLMLKAAKLEGP 183
Query: 221 VQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL--------LTLTQIQW---------WSV 263
+LG+ N +P +K + ++R TL +IQ W++
Sbjct: 184 THDLTFLGLRINTITGVALVPDDKLAKLRRLTSTWQRRQAATLKEIQELSAERSFVVWTI 243
Query: 264 ALHRSSPIFPQ-----------------APQ-------------VFVSTDASNSG-WGAI 292
RS+ + + AP + V+TD S G GA+
Sbjct: 244 MRRRSNQVMLEGEYRARYGEILSFWWHLAPTWNGHTMIADDRAPIAVATDDSGVGDIGAV 303
Query: 293 VDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEG 352
D +L + I E++AV A + + V++ DNQ V++ I K G
Sbjct: 304 CDELTLSELAPKSIIKEGIMALEIYAVVRAFRLWGVRWRGQRVMVYCDNQAVIAAI-KSG 362
Query: 353 GTKSFKLLR 361
K ++R
Sbjct: 363 SIKDAAVMR 371
>gi|330923367|ref|XP_003300213.1| hypothetical protein PTT_11391 [Pyrenophora teres f. teres 0-1]
gi|311325771|gb|EFQ91691.1| hypothetical protein PTT_11391 [Pyrenophora teres f. teres 0-1]
Length = 245
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LLL+++ G + + L + N + +P D L K+D+ A+ +
Sbjct: 71 LLLAAKPGGGVRICQDYRGLNNVTIKNRYPLPLIRETLDALCDAKVYTKLDIIAAFNKLR 130
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIV-YLDDL 183
I H+ + + R LY +PFGL +AP F N+I + L +L R+ YLDD+
Sbjct: 131 IAEGHEWKTAFITRFGLYESLVMPFGLCNAPASF---QNYINHTLHDLLDRICTAYLDDV 187
Query: 184 LLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
L+ +++ R R V L +++ + +T +YLGI+ PT
Sbjct: 188 LVYSKNKKEHREHVRTVVRRLLDAGLQIDINKCEFEVTET-KYLGIIVTPT 237
>gi|21743221|emb|CAD40076.1| OSJNBa0085C10.29 [Oryza sativa Japonica Group]
Length = 626
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL K + N + +P D L+ KIDL Y + IRP + R
Sbjct: 375 YRSLNKVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSEYHQLKIRPRDIPKTAFSTRYG 434
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDS 190
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D
Sbjct: 435 LYEFTVMSFGLTNAPAYFMNLMNKV--FMEYLDKFVVVFIDDILIYSKDE 482
>gi|390340432|ref|XP_003725242.1| PREDICTED: uncharacterized protein LOC100891783 [Strongylocentrotus
purpuratus]
Length = 637
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP-DWH 403
++YI+++GGT S L L+ + +A +IPG+ N AD LSR K LP +W
Sbjct: 1 MAYINRQGGTHSVALNELASQLWAWCKGARVFPIASHIPGEENIIADFLSRGKCLPSEWT 60
Query: 404 LLPEVTQHIFAQWGVPEIDLFATA 427
L P V + + +GV IDLFAT+
Sbjct: 61 LSPTVFRQLVRVFGVLGIDLFATS 84
>gi|301611871|ref|XP_002935459.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1452
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 150/371 (40%), Gaps = 80/371 (21%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
+ L K + N +++ + K+DL AY V IR + + R +
Sbjct: 571 YRELNKITVKNRYQI----REAKIFSKLDLRGAYNLVRIRKGDEWKTAFRSRYGHFEYLV 626
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
+PFGL +AP F L N I + L + VI+YLDD+L+ ++D R + L++
Sbjct: 627 MPFGLCNAPATFQHLVNDI--FRDFLDIFVIIYLDDILIFSKDLEEHRKHMKKVFLRLRT 684
Query: 207 LRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSL--------PLEKQST-------- 247
+ V LE+ L+ T +LG + +P +D K + P +++
Sbjct: 685 HQLFVKLEK-CLFEKTTIDFLGFIISPFGIRMDPKKISSILDWPAPTSRKAVQRLVGFAN 743
Query: 248 -IQRYLLTLTQIQWWSVALHRSSPIF---PQAPQVF-----------------------V 280
++++ +QI L RS+ F QA F +
Sbjct: 744 FYRKFIRNFSQIILPITELTRSNQKFVWTCQAQTAFEILKKLFTSAPILCHPDPSLPFTL 803
Query: 281 STDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPV 329
DAS S GAI+ + ++ + + +E+ A++ ALE +
Sbjct: 804 EVDASESAVGAILSQRVGLSEELHPVAFFSRKLNKSEQNYDVADRELLAIKLALEEWRYL 863
Query: 330 LQDK--VVLIQSDNQTVVSYIHKEGGTKSFKLLREVE---ALFDLAVRHNITLMARYIPG 384
L+ +LI +D++ + Y+ +S K LR + ALF + +IT Y PG
Sbjct: 864 LEGARFPILILTDHRN-LEYL------RSAKRLRPRQARWALFFMRFNFHIT----YRPG 912
Query: 385 KFNTWADSLSR 395
N D+LSR
Sbjct: 913 AKNVKPDALSR 923
>gi|270012874|gb|EFA09322.1| hypothetical protein TcasGA2_TC001648 [Tribolium castaneum]
Length = 1388
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL+ Y VP+ + S V Y +PFGL +AP VF +L
Sbjct: 481 DLLSGNGYFTTLDLASGYMQVPVAKESRHLTSFVTTTGQYEFNRMPFGLVNAPSVFNRLM 540
Query: 163 NWIANYLRNLGMRVI-VYLDDLLL 185
N + R +G V+ +Y+DD+L+
Sbjct: 541 NMVT---RKIGRGVVTIYMDDILI 561
>gi|38347461|emb|CAD40088.2| OSJNBb0012A12.14 [Oryza sativa Japonica Group]
Length = 1075
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 157/388 (40%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ K+DL Y + IR + R
Sbjct: 657 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKMDLRSGYHQLRIREEDIPKTAFTTRYG 716
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 717 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 774
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSLP---------------- 241
+ L+ + L + W + ++LG M + +D +++
Sbjct: 775 LGKLREHQLYAKLSKCEFW-LSEVKFLGHMISAKGVAVDPETVTAVTDWKQPKTVTQVRS 833
Query: 242 -----------LEKQSTIQRYLLTLTQIQW---WSVALHR----------SSP--IFPQA 275
+E S I R + L + + WS + SSP I P
Sbjct: 834 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDT 893
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ +H + E+ AV AL+
Sbjct: 894 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYHTHDLELAAVVHALKIWRHY 953
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 954 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1005
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++ PE+ Q + A
Sbjct: 1006 ADALSRKSHCNTLNVRGIPPELNQQMEA 1033
>gi|308460222|ref|XP_003092417.1| hypothetical protein CRE_03461 [Caenorhabditis remanei]
gi|308253211|gb|EFO97163.1| hypothetical protein CRE_03461 [Caenorhabditis remanei]
Length = 1398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F +IDL+ AY + + ++ L + L+ LPFG+ +AP +F ++ +
Sbjct: 575 LNGGKFFSQIDLADAYLQIEVDDDSKKLLVINTHKGLFHYNKLPFGVKAAPGIFQQVMDT 634
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER-SVLWPVQT 223
+ L V YLDD+++ + + + + S + + LE+ S L P
Sbjct: 635 MLAGLDG----VACYLDDIIVTGCSIEEHNQRVKKVIERIASFGFRMRLEKCSFLMP--E 688
Query: 224 CQYLGIMWN---------PTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVA-LHRSSP 270
Q+LG + N D K++P K + R L L Q V LHR P
Sbjct: 689 IQFLGFVINEQGRKPDPQKIADIKAMPAPKNAIEVRSFLGLIQFYGTFVRDLHRLRP 745
>gi|301614632|ref|XP_002936791.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1305
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 146/360 (40%), Gaps = 79/360 (21%)
Query: 101 VPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQV 157
+P+ Q+ K+DL AY V IR + + R + +PFGL +AP
Sbjct: 442 IPELFQQIREAKIFSKLDLRGAYNLVRIRKGDEWKTAFRSRYGHFEYLVMPFGLCNAPAT 501
Query: 158 FAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
F L N I + L + VI+YLDD+L+ ++D R + L++ + V LE+
Sbjct: 502 FQHLVNDI--FRDFLDIFVIIYLDDILIFSKDLEEHRKHMKKVFLRLRTHQLFVKLEK-C 558
Query: 218 LWPVQTCQYLGIMWNP---TLDSKSL--------PLEKQST---------IQRYLLTLTQ 257
L+ T +LG + +P +D K + P +++ ++++ +Q
Sbjct: 559 LFEKTTIDFLGFIISPFGIRMDPKKISSILDWPAPTSRKAVQRLVGFANFYRKFIRNFSQ 618
Query: 258 IQWWSVALHRSSPIF---PQAPQVF-----------------------VSTDASNSGWGA 291
I L RS+ F QA F + DAS S GA
Sbjct: 619 IILPITELTRSNQKFVWTCQAQTAFEILKKLFTSAPILCHPDPSLPFTLEVDASESAVGA 678
Query: 292 IVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK--VVLIQ 338
I+ + ++ + + +E+ A++ ALE +L+ +LI
Sbjct: 679 ILSQRVGLSEELHPVAFFSRKLNKSEQNYDVADRELLAIKLALEEWRYLLEGARFPILIL 738
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVE---ALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+D++ + Y+ +S K LR + ALF + +IT Y PG N D+LSR
Sbjct: 739 TDHRN-LEYL------RSAKRLRPRQARWALFFMRFNFHIT----YRPGAKNVKPDALSR 787
>gi|147827024|emb|CAN62281.1| hypothetical protein VITISV_010464 [Vitis vinifera]
Length = 1459
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + + K+DL Y+ V I + + V R
Sbjct: 610 YRALNKVTIKNKYPIPLAIELFDRLSKASYFTKLDLRSDYWQVQIAAGDEEKTTCVTRYG 669
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL +AP F L N + +YL V+VYLDD+++ ++ + R
Sbjct: 670 SYEFLVMPFGLTNAPATFCNLMNDVLFDYLDAF---VVVYLDDIVVYSKTLIEHEKHLRL 726
Query: 200 AVATLQSLRWSVNLER 215
L+ R V E+
Sbjct: 727 VFQRLRENRLYVKREK 742
>gi|88595453|gb|ABD43033.1| reverse transcriptase [Orobanche cernua var. cumana]
gi|88595457|gb|ABD43035.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 143
Score = 53.1 bits (126), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKSEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + V W
Sbjct: 124 LDILRTERLYTKFSKCVFW 142
>gi|310753565|gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 136/345 (39%), Gaps = 63/345 (18%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL Q Y V I+ + + + LY +PFGL++AP F +L
Sbjct: 682 DELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRL- 740
Query: 163 NWIANYLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
+ LR LG V+VY DD+L+ + + TL+ + LE+
Sbjct: 741 --MTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKLYGKLEKCSFMQN 798
Query: 222 QTCQYLGIMWNPT---LDS------KSLPLEKQSTIQRYLLTLT---------------- 256
+ Q+LG + + +D KS P+ K T R L
Sbjct: 799 EV-QFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMAP 857
Query: 257 --------QIQWWSVALHR---------SSPI--FPQAPQVF-VSTDASNSGWGAI-VDN 295
+ +W A SPI P ++F V DAS G GA+ V
Sbjct: 858 ITECMKKGEFKWGDKAESSFNIIKEKLCESPILTLPNFNKLFEVECDASGIGIGAVLVQE 917
Query: 296 HSLGGVWSDHQEMWHINL----KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKE 351
H +S+ +N KE +A+ AL L+ + ++ SD++ + YI+ +
Sbjct: 918 HKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDHE-ALKYINGQ 976
Query: 352 GGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
+ + + VE L + ++YI GK N AD+LSR+
Sbjct: 977 HKL-NHRHAKWVEFL------QSFNFSSKYIEGKDNIVADALSRR 1014
>gi|326672393|ref|XP_003199655.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1146
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 142/362 (39%), Gaps = 76/362 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 293 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 352
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 353 I--FRDMLNKWVIVYIDDILIYSNSLSEHIQHVRAVLKRL--IENQLYAKSSKCKFHQTC 408
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 409 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 468
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 469 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 528
Query: 297 SL-------GGVWS----DHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL G +S + + + +E+ A+++ALE L+ K I +
Sbjct: 529 SLVNKKLHPGAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 588
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLS-----RQKEL 399
+ YI +S K L +A + L YIPG N AD+LS E+
Sbjct: 589 LEYI------RSCKRLNPRQARWALFFT-RFDFQVTYIPGSKNIKADALSCLSDDETSEI 641
Query: 400 PD 401
PD
Sbjct: 642 PD 643
>gi|326427679|gb|EGD73249.1| hypothetical protein PTSG_12229 [Salpingoeca sp. ATCC 50818]
Length = 1677
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/371 (20%), Positives = 143/371 (38%), Gaps = 88/371 (23%)
Query: 93 FHLINHFRVPDFLQRGDFL------------VKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +NH + D D L +DL Y + + P + + V D
Sbjct: 610 FRRLNHISIKDRYPLPDMLSVLAKCAGHRLYTTLDLCSGYHQLRVHPQDEDTTAFVCDDG 669
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +PFG+A+ P VF +L + + + V+VYLDD+ V+ +
Sbjct: 670 QFAWRVMPFGIANGPPVFQRLMDRVTADIPG----VLVYLDDI-------VVFSNTKHQH 718
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL--------------GIMWNPTLDSKSLPLEKQS 246
+ TL+ + + ER L P + C++L GI +P + L K S
Sbjct: 719 LRTLRRVFQRLRDERLALKP-KKCEFLKPSLLFLGHVLSCHGISVDPDKVDAVMKLAKPS 777
Query: 247 T-------------IQRYLLTLTQI-----------QWWSV----------ALHRSSPIF 272
+ +R+L + I +W AL ++ +
Sbjct: 778 SKTELLSFLGTVNYYRRFLRNMEDIAAPLRELQDLAEWGEAHEHAFNALKQALCNATTLA 837
Query: 273 P---QAPQVFVSTDASNSGWGAIVDNHS-----LGGVWSDHQEMWHINLKEMFAVRSALE 324
P AP + DAS+ G GA+++ H + + + + I +E+ A+ AL+
Sbjct: 838 PPDHNAP-FIIRADASDKGIGAVLEQHGRPVEFMSKKLTSAEANYPIRQRELLAIVVALQ 896
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPG 384
+ V + +D+++++ + + ++LR +E L + +++ Y PG
Sbjct: 897 KWRHYFGFSTVEVITDHKSLLD-LQTQSKISERRILRWMETLAEFSIKWT------YTPG 949
Query: 385 KFNTWADSLSR 395
N D+LSR
Sbjct: 950 VDNHVPDTLSR 960
>gi|147867109|emb|CAN78403.1| hypothetical protein VITISV_035220 [Vitis vinifera]
Length = 126
Score = 53.1 bits (126), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDKLKTTCVTRYD 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQAR 198
Y +PFGL +AP +F L N I + YL V+VYLDD+++ +L S R
Sbjct: 65 SYEFLVMPFGLTNAPVMFCTLMNKIFHPYLDKF---VVVYLDDIVIYRGSELLRASHQR 120
>gi|189242337|ref|XP_001810078.1| PREDICTED: similar to orf [Tribolium castaneum]
gi|270016528|gb|EFA12974.1| hypothetical protein TcasGA2_TC004277 [Tribolium castaneum]
Length = 1399
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL+ Y VP+ + S V Y +PFGL +AP VF +L
Sbjct: 588 DLLSGNGYFTTLDLASGYMQVPVAKESRHLTSFVTTTGQYEFNRMPFGLVNAPSVFNRLM 647
Query: 163 NWIANYLRNLGMRVI-VYLDDLLL 185
N + R +G V+ +Y+DD+L+
Sbjct: 648 NMVT---RKIGRGVVTIYMDDILI 668
>gi|47211608|emb|CAF95469.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1238
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 155/389 (39%), Gaps = 75/389 (19%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K+DL + Y VP+R +V+ L+ +PFGL A Q F +L + + LR L
Sbjct: 485 KVDLVRGYHQVPVRAEDVPKTAVITPFGLFEFLRMPFGLKGAAQTFQRLMDSV---LRGL 541
Query: 173 GMRVIVYLDDLLLGN-----------------QDSVLLRSQARA--AVATLQSLRWSVNL 213
V VYLDD+L+ + D L+ + A+ + + L ++
Sbjct: 542 TF-VFVYLDDILVASPSADEHLTHLGQVFQRLADHGLIVNPAKCQFGLQVIDFLGHRISS 600
Query: 214 ERSVLWPVQT---------------CQYLGIM--WNPTLDSKSLPLEKQSTIQRYLLTLT 256
E +V P + ++LG++ +N L + L+ R
Sbjct: 601 EGAVPLPAKVQVVAEFPRPASVKALQEFLGMVNFYNRFLPRAAHLLQPLYEALRLKKATD 660
Query: 257 QIQWWS----------VALHRSSPIFPQAPQ--VFVSTDASNSGWGAIVDNHSLGGVWS- 303
Q+ W + AL ++ + AP+ + ++TDAS+ GA+V+ +GGVW
Sbjct: 661 QVDWTAERVQAFEGAKSALANATLLAHPAPRADIALTTDASDVAVGAVVE-QGVGGVWQP 719
Query: 304 ---------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGT 354
D++ + + +E+ A+ A +L+ + D++ + + K
Sbjct: 720 LAFFSRKLRDNERKYSVFDRELLALYLATRHFRFLLEGRSFTAYVDHKPLTFAMSKVSEP 779
Query: 355 KSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFA 414
S + R + A+ + T R++ GK N AD LSR P + L +
Sbjct: 780 WSARQQRHLAAVSEF------TTDIRHVAGKANPVADCLSRVLVCPVYLGL-DFASMAAD 832
Query: 415 QWGVPEIDLFATANSA-----AFLVQGGP 438
Q G EI +A + A + GGP
Sbjct: 833 QSGDQEIRALESAGTGLKLEKAVVQDGGP 861
>gi|341893614|gb|EGT49549.1| hypothetical protein CAEBREN_25644 [Caenorhabditis brenneri]
Length = 1294
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL+ AY + ++ L + L+C LPFG+ SAP +F +
Sbjct: 571 LNGGLYFSQIDLADAYLQCEVDEQAKQLLVINTHRGLFCYNRLPFGIKSAPGIFQSFMDR 630
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L YLDDL++ + A + LQ + + +E+
Sbjct: 631 LINGLDGTS----AYLDDLIVTGSSIEEHNRRVHAVMQRLQEFGFRIRMEKCSFLQ-HEI 685
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 686 KYLGFIIN 693
>gi|189519189|ref|XP_001342111.2| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1165
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 88 LSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
L++ + + + +P L G K+D+S AY + + S +++++V L
Sbjct: 340 LTVNRASSVEQYPIPKVEDLFTQLAGGQKFSKLDMSHAYQQIMLDESAKKYVTVNTHKGL 399
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL-GNQDSVLLRSQARAA 200
Y LPFG+AS+ +F + I L+NL V+VYLDD+L+ G D LR+
Sbjct: 400 YTYCRLPFGVASSRAIFQRTMEGI---LQNL-THVVVYLDDILVTGANDEEHLRNLEE-- 453
Query: 201 VATLQSLRWS-VNLERSVLWPVQTCQYLG 228
L+ L+ S + L+RS C++LG
Sbjct: 454 --VLRRLKSSGLRLKRS------KCEFLG 474
>gi|56407688|gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL + Y + ++ + + ++ LY +PFGL +AP F +L
Sbjct: 739 DELHGAKIFSKIDLRRGYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMRLM 798
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LRN +G V+VY DD+L+ ++D + L+ + NLE+ + V
Sbjct: 799 NHV---LRNFIGKFVVVYFDDILIYSKDPQKHIIHLKEVFLVLRREQLYANLEK-CYFGV 854
Query: 222 QTCQYLGIM 230
++ +LG +
Sbjct: 855 ESVVFLGFI 863
>gi|366996490|ref|XP_003678008.1| hypothetical protein NCAS_0H03510 [Naumovozyma castellii CBS 4309]
gi|342303878|emb|CCC71661.1| hypothetical protein NCAS_0H03510 [Naumovozyma castellii CBS 4309]
Length = 1220
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
L + +DG + L F L + + + F +P D L ++DL Y V
Sbjct: 257 LFVIKKDGSKRLC-CDFRGLNEVTVKSKFPLPRIDDLFDMLSGASVFSQLDLVSGYHQVE 315
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN-WIANYLRNLGMRVIVYLDDL 183
+ P Q + V + Y +PFGL +AP F +L N + Y +G VIVYLDD+
Sbjct: 316 VEPKDQYKTAFVTHEGQYIWKVMPFGLTNAPSTFQRLMNETLKGY---IGKFVIVYLDDI 372
Query: 184 LLGNQD 189
L+ ++D
Sbjct: 373 LIFSKD 378
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 27/150 (18%)
Query: 268 SSPI---FPQAPQVFVSTDASNSGWGA----IVDNHSLGGVWS-------DHQEMWHINL 313
S+P+ F ++ + V+TDAS+ GA + D ++ GV + Q W +
Sbjct: 497 SAPVLLPFDESKGIVVTTDASDYAVGATLELVNDQGNVEGVVAYMSAKLHGAQLNWPVRE 556
Query: 314 KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLR--EVEALFDLAV 371
KE +A+R ALE L+ K ++ +D+++ + ++H + T S K+ R + A +D +
Sbjct: 557 KEGYAIRLALEHWSHYLKGKHFVLHTDHES-LKFLHSKKDT-SPKIARWLDTFAEYDFEI 614
Query: 372 RHNITLMARYIPGKFNTWADSLSRQKELPD 401
YIPG+ N AD LSR+ +L +
Sbjct: 615 --------VYIPGEHNR-ADGLSRRPDLKN 635
>gi|270016118|gb|EFA12566.1| hypothetical protein TcasGA2_TC004195 [Tribolium castaneum]
Length = 988
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANY 168
++ IDL +Y+ +P+ P +++ + +Y Y LPFGL +A F++ + +
Sbjct: 321 YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTE 380
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+R V+ Y+DDLL+ ++ R L+ R ++NLE+S
Sbjct: 381 VREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKS 425
>gi|270017238|gb|EFA13684.1| hypothetical protein TcasGA2_TC016048 [Tribolium castaneum]
Length = 1075
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANY 168
++ IDL +Y+ +P+ P +++ + +Y Y LPFGL +A F++ + +
Sbjct: 321 YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTE 380
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+R V+ Y+DDLL+ ++ R L+ R ++NLE+S
Sbjct: 381 VREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKS 425
>gi|270011286|gb|EFA07734.1| hypothetical protein TcasGA2_TC002212 [Tribolium castaneum]
Length = 1491
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ + +DL + HV + PS ++ S V Y +PFGL +AP VF +
Sbjct: 547 DMLKNKRYFSCLDLKNGFHHVRMAPSSIKYTSFVTPLGQYEFLKMPFGLTNAPHVFQRYI 606
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
+ + + L N +++VYLDD+++ +D S R + + L++ + +
Sbjct: 607 HEVFSDLIN-SHKILVYLDDIMIATEDLDEHLSLLREVFDLAATHKLEFRLDKCMFLNSE 665
Query: 223 TCQYLGIMWN 232
T YLG + N
Sbjct: 666 TI-YLGYLIN 674
>gi|211925519|dbj|BAG81983.1| gag-pol polyprotein [Clonorchis sinensis]
Length = 310
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 75 SRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPS 128
S+ ++ GD + SL + + + +P DF L + K+DL +AY+H+P+ P
Sbjct: 17 SKGDWRPCGD--YRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPD 74
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
++ L+ T +PFGL +A Q F + + + LR L V YLDD+L+ +
Sbjct: 75 DIPKTAITTPFGLFEFTRMPFGLRNAAQTFQRFMDEV---LRGLPF-VYAYLDDVLIAST 130
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ RA L +N+++ L+ V + +LG
Sbjct: 131 SPTEHAAHLRAVFERLSIYSIRLNIDK-CLFGVTSLDFLG 169
>gi|189242428|ref|XP_001808069.1| PREDICTED: similar to protease, reverse transcriptase and RNase H
[Tribolium castaneum]
Length = 553
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANY 168
++ IDL +Y+ +P+ P +++ + +Y Y LPFGL +A F++ + +
Sbjct: 402 YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTE 461
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+R V+ Y+DDLL+ ++ R L+ R +NLE+S
Sbjct: 462 VREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMKINLEKS 506
>gi|147810599|emb|CAN71970.1| hypothetical protein VITISV_007365 [Vitis vinifera]
Length = 276
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D +V KIDL Y + IRP + D LY
Sbjct: 7 AINKITIKYRFPIPRLDDMLDMMVGSXXFSKIDLRSGYHQIRIRPGDEWKTXFKTXDGLY 66
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+PFGL +AP F ++ + +G V+VY DD+L+ ++ + +
Sbjct: 67 XWLVMPFGLTNAPSTFMRIMTQVLKPF--IGRFVVVYFDDILIYSRSCKDHEEHLKQVMR 124
Query: 203 TLQSLRWSVNLERSVL 218
TL++ ++ +NL++
Sbjct: 125 TLRAEKFYINLKKCTF 140
>gi|291238550|ref|XP_002739191.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 943
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 72 LLSSRDGF-----QDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIR 126
L S RD DL D+ SL + + ++G +L K D+ A+ +PI
Sbjct: 521 LSSPRDNIDTPSINDLIDKDDFSLSYVKIDDAISAIQRKEKGAWLCKTDIVDAFKLIPIN 580
Query: 127 PSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN---WIANYLRNLGMRVIVY-LDD 182
PS + + Y LPFG S+P++F L++ WIA+ N + I + LDD
Sbjct: 581 PSLWHLYGISWEKHFYFFVRLPFGSRSSPKIFDNLSSAICWIAH--NNYHIDTIFHLLDD 638
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLE-RSVLWPVQTCQYLGIMWNPTLDSKSLP 241
L D+ + AV TL R V L + P +YLGI + LP
Sbjct: 639 FL--TVDAPTFDADRTMAVLTLIFRRLGVPLAPHKTVGPSTVLEYLGITLDTVEIQARLP 696
Query: 242 LEKQSTIQRYLLTL 255
+K I++ L T
Sbjct: 697 EDKLVRIRKLLDTF 710
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 333 KVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADS 392
K +L DN V I+K G +KS +++ + L A + A +IPGK NT ADS
Sbjct: 855 KRILFNCDNMATVHIINK-GRSKSPAIMKLMRRLVITAASFDFMFHAEHIPGKINTIADS 913
Query: 393 LSR 395
LSR
Sbjct: 914 LSR 916
>gi|147810925|emb|CAN71787.1| hypothetical protein VITISV_031913 [Vitis vinifera]
Length = 1667
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + + K+DL Y+ V + + + V R
Sbjct: 599 YRALNKVTIKNKYPIPLAAELFDRLSKASYFTKLDLRSGYWQVRVXAGDEGKTTCVTRYG 658
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N + +YL V+VYLDD+++
Sbjct: 659 SYEFLVMPFGLTNAPATFCNLMNDVLFDYLDAF---VVVYLDDIVV 701
>gi|9626721|ref|NP_040998.1| polymerase [Heron hepatitis B virus]
gi|118865|sp|P13846.1|DPOL_HHBV RecName: Full=Protein P; Includes: RecName: Full=DNA-directed DNA
polymerase; Includes: RecName: Full=RNA-directed DNA
polymerase; Includes: RecName: Full=Ribonuclease H
gi|325454|gb|AAA45738.1| polymerase [Heron hepatitis B virus]
Length = 788
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T I A
Sbjct: 445 ISLDLSQAFYHLPLAPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEIAS 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + + L + + A LQ +N ++ PV T ++LG
Sbjct: 505 RFNVWTFSYMDDFLLCHPSARHLNTISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG 562
>gi|108708503|gb|ABF96298.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1357
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 9/198 (4%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR S R
Sbjct: 759 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTSFTTRYG 818
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 819 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLV 876
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQW 260
+ LQ + L + W + ++LG T+ L +R++ ++I
Sbjct: 877 LGKLQEHQLYAKLSKCEFW-LSEVKFLGHKQPKTVTQVRSFLGLAGYYRRFIENFSKIAR 935
Query: 261 WSVALHRSSPIFPQAPQV 278
L + F +PQ
Sbjct: 936 PMTQLLKKEEKFVWSPQC 953
>gi|47209630|emb|CAF95050.1| unnamed protein product [Tetraodon nigroviridis]
Length = 992
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 154/395 (38%), Gaps = 75/395 (18%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
R K+DL + Y VP+R +V+ L+ +PFGL A Q F +L + +
Sbjct: 201 RATIFSKVDLVRGYHQVPVRAEDVPKTAVITPFGLFEFLRMPFGLKGAAQTFQRLMDSV- 259
Query: 167 NYLRNLGMRVIVYLDDLLLGN-----------------QDSVLLRSQARA--AVATLQSL 207
LR L V VYLDD+L+ + D L+ + A+ + + L
Sbjct: 260 --LRGLTF-VFVYLDDILVASPSADEHLTHLGQVFQRLADHGLIVNPAKCQFGLQVIDFL 316
Query: 208 RWSVNLERSVLWPVQT---------------CQYLGIM--WNPTLDSKSLPLEKQSTIQR 250
++ E +V P + ++LG++ +N L + L+ R
Sbjct: 317 GHRISSEGAVPLPAKVQVVAEFPRPASVKALQEFLGMVNFYNRFLPRAAHLLQPLYEALR 376
Query: 251 YLLTLTQIQWWS----------VALHRSSPIFPQAPQ--VFVSTDASNSGWGAIVDNHSL 298
Q+ W + AL ++ + AP+ + ++TDAS+ GA+V+ +
Sbjct: 377 LKKATDQVDWTAERVQAFEGAKSALANATLLAHPAPRADIALTTDASDVAVGAVVEQ-GV 435
Query: 299 GGVWS----------DHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYI 348
GGVW D++ + + +E A+ A +L+ + D++ + +
Sbjct: 436 GGVWQPLAFFSRKLRDNERKYSVFDRESLALYLATRHFRFLLEGRSFTAYVDHKPLTFAM 495
Query: 349 HKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEV 408
K S + R + A+ T R++ GK N AD LSR P + L +
Sbjct: 496 SKVSEPWSARQQRHLAAV------SEFTTDIRHVAGKANPVADCLSRVLVCPVYLGL-DF 548
Query: 409 TQHIFAQWGVPEIDLFATANSA-----AFLVQGGP 438
Q G EI +A + A + GGP
Sbjct: 549 ASMAADQSGDQEIRALESAGTGLKLEKAVVQDGGP 583
>gi|340370991|ref|XP_003384029.1| PREDICTED: hypothetical protein LOC100641286 [Amphimedon
queenslandica]
Length = 325
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG LVK D+ +AY ++PI P Q L V + Y LPFGL SAP++ + + +
Sbjct: 124 RGSLLVKADVKEAYRNIPIHPDDQWLLGVEWDGVTYIDGALPFGLRSAPKLLSAIADAAQ 183
Query: 167 NYLRNLG 173
LR G
Sbjct: 184 WVLRQKG 190
>gi|189236288|ref|XP_001815250.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1523
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 744 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 803
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 804 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 861
Query: 223 TCQYLG 228
+YLG
Sbjct: 862 I-EYLG 866
>gi|432869982|ref|XP_004071779.1| PREDICTED: uncharacterized protein LOC101172982 [Oryzias latipes]
Length = 1605
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 157/402 (39%), Gaps = 81/402 (20%)
Query: 78 GFQDLGDRAFLSLKKFHLI---NHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + + + I N + +P D L K+DL AY V IR
Sbjct: 75 GKRDRGLRPCIDYRGLNSITVRNTYPLPLLQTAFDLLSGAQVFSKLDLRNAYHLVRIREG 134
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + + + +PFGL +AP VF L N I + N V VYLDD+L+ +
Sbjct: 135 DEWKTAFNTPNGHFEYLVMPFGLTNAPAVFQSLINDILKDMIN--KFVFVYLDDILIFSP 192
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSLPL--- 242
D RA + L + E+ QT ++LG + +P +D +
Sbjct: 193 DLDTHVQHVRAVLQRLLENQLYCKAEKCEFHTTQT-RFLGHVVSPGRVQMDGSKVKAVLE 251
Query: 243 ----EKQSTIQRYL----------------------LTLTQIQW-WSVALHR-------- 267
+ +QR+L LT ++ + W+ R
Sbjct: 252 WPVPSGRKPLQRFLGFANFYRRFIRGFSGVAAPLHKLTSAKVHFVWNEGADREFTKLKSR 311
Query: 268 --SSPIFPQ---APQVFVSTDASNSGWGAIVDNHS----------LGGVWSDHQEMWHIN 312
++PI Q + Q V DAS SG GA++ + + + + I
Sbjct: 312 FSTAPILTQPDSSKQFIVEVDASESGVGAVLSQRAADNKVHPCAYFSCKLTPAERNYDIG 371
Query: 313 LKEMFAVRSALERKLPVLQ--DKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLA 370
+E+ AV+ ALE L+ ++ L+ +D++ + YI ++ K L +A + L
Sbjct: 372 NRELLAVKLALEEWRHWLEGAEQPFLVWTDHKN-LEYI------RTAKRLNPRQARWALF 424
Query: 371 VRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHI 412
+I+ Y PG N D+LSRQ + + +P I
Sbjct: 425 FDFSIS----YRPGSKNIKPDALSRQFQTEEESAIPAAPTTI 462
>gi|189236881|ref|XP_001807130.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 2021
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ G + +DL Y +P+ +++ S V Y +PFGL +AP+ F +
Sbjct: 1230 DRLQGGVYFTSLDLRSGYHQIPLSEESKKYTSFVTPFGQYEYNRVPFGLTNAPRTFQRFM 1289
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
N I R VYLDD+LL +D + L+S ++NL++
Sbjct: 1290 NKILKPARE---NAAVYLDDVLLHAKDVNEALQNLQKVFEILRSEGLTLNLKK 1339
>gi|326674036|ref|XP_003200053.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1165
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 150/389 (38%), Gaps = 76/389 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 354 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 413
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 414 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IENQLYAKSSKCEFHQTC 469
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 470 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 529
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 530 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 589
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 590 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 649
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 650 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDNETSEI 702
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATAN 428
PD ++ QW + + L A N
Sbjct: 703 PDEPIIKSPLIVAPIQWDIDQEILQAAEN 731
>gi|326681316|ref|XP_003201782.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Danio rerio]
Length = 1161
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 137/351 (39%), Gaps = 71/351 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 477 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 536
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 537 I--FRDMLNKWVIVYVDDILVYSNSLSEHIQHVRAVLKRL--IKNQLYAKSSKCEFHQTC 592
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL--------------------- 252
+LG + +P +D + + Q +QR+L
Sbjct: 593 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYWRFIRNFSSVAAPLT 652
Query: 253 ----LTLTQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+ +++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 653 AMVKTSNARLKWNPAAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 712
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 713 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFILITDHKN 772
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 773 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 816
>gi|326672972|ref|XP_003199768.1| PREDICTED: hypothetical protein LOC100331420 [Danio rerio]
Length = 1442
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R +L KF R+ + ++R ++ +DL + Y+ VP+ + + + + L
Sbjct: 1049 RKLNALSKFDAYPMPRIDELVERIGRAKYITTLDLCKGYWQVPLEKTSREYTAFRTPVGL 1108
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL AP F +L N + LRN YLDD+++
Sbjct: 1109 YHFKTMPFGLHGAPATFQRLMNQV---LRNCEEYSAAYLDDVVI 1149
>gi|321459492|gb|EFX70545.1| hypothetical protein DAPPUDRAFT_257014 [Daphnia pulex]
Length = 424
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 52/169 (30%)
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGI----------MWNPTLDSKSLPLEKQSTI--- 248
A +SL + +NLE+SV P + +YLG+ M L++ +PL ++I
Sbjct: 248 AKEKSLGFLINLEKSVTTPSRVMEYLGMVIDSVQEVKKMCTDALNTGQVPLRDVASILGN 307
Query: 249 ------------------QRYLLTLTQ-------------------IQWWSVALHRSS-- 269
QR+ + +Q ++WW L ++
Sbjct: 308 FTWAIPTIPFAQSHYRSMQRFYINESQKALGDLSVKCVLSVGARSDLEWWVANLEEANGK 367
Query: 270 PIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFA 318
FP+ + + +DAS SGWGA+ D + G W+ Q HIN E+
Sbjct: 368 EFFPKVADMEIFSDASRSGWGAVCDGITTRGPWTMDQSTLHINCLELLG 416
>gi|270005481|gb|EFA01929.1| hypothetical protein TcasGA2_TC007543 [Tribolium castaneum]
Length = 8815
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 665 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 724
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 725 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 782
Query: 223 TCQYLG 228
+YLG
Sbjct: 783 I-EYLG 787
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 5125 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 5184
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 5185 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 5242
Query: 223 TCQYLG 228
+YLG
Sbjct: 5243 I-EYLG 5247
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 6550 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 6609
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 6610 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 6667
Query: 223 TCQYLG 228
+YLG
Sbjct: 6668 I-EYLG 6672
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
+ +N + D F +DL+ Y+ +P+ + V D Y +PFGLA
Sbjct: 8026 YRQLNSKTIKDRFPLPRFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLA 8085
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVN 212
+AP VF + N + LR Y+DDLL+ ++D + R L+ ++
Sbjct: 8086 NAPAVFQRAMNKVLGPLRF--QTAYCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLK 8143
Query: 213 LERSVLWPVQTCQYLG 228
L + + Q +YLG
Sbjct: 8144 LSKCCFFGSQI-EYLG 8158
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 3627 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 3686
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + + L+ ++ L + + Q
Sbjct: 3687 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLQTVFQLLRQFGLTLKLSKCCFFGSQ 3744
Query: 223 TCQYLG 228
+YLG
Sbjct: 3745 I-EYLG 3749
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 2163 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 2222
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + + LR Y+ DLL+ ++D + R L ++ L + + Q
Sbjct: 2223 NKMLDPLRF--QTAFCYIADLLIPSKDFETGVNNLRTVFQLLLQFGLTLKLSKCCFFGNQ 2280
Query: 223 TCQYLG 228
+YLG
Sbjct: 2281 I-EYLG 2285
>gi|189242078|ref|XP_001808624.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1242
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 492 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 551
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 552 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 609
Query: 223 TCQYLG 228
+YLG
Sbjct: 610 I-EYLG 614
>gi|338808432|gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 70 TLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHV 123
L + +DG + + + +L + + N + +P D L+ KIDL Y +
Sbjct: 715 ALFVEKKDGTKRMCI-DYRALNEVTIKNKYPLPRIEDLFDQLRGASVFSKIDLRSGYHQL 773
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
IRPS + + + LY T + FGL +AP F L N + ++ L V+V++DD+
Sbjct: 774 RIRPSDIPKTAFITKYGLYEFTVMSFGLTNAPAFFMNLMNSV--FMDYLDKFVVVFIDDI 831
Query: 184 LLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
L+ +Q R + L+ + L + W
Sbjct: 832 LVYSQSEEDHADHLRMVLQRLREHQLYAKLSKCEFW 867
>gi|270005488|gb|EFA01936.1| hypothetical protein TcasGA2_TC007550 [Tribolium castaneum]
Length = 1119
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 696 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 755
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 756 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 813
Query: 223 TCQYLG 228
+YLG
Sbjct: 814 M-EYLG 818
>gi|242760222|ref|XP_002339946.1| gag/polymerase/env polyprotein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218723142|gb|EED22559.1| gag/polymerase/env polyprotein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1000
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R K+D+ Q + + + P + + + R Y +PFGL ++P F + N
Sbjct: 156 LSRARIFTKLDIRQGFHRIRMDPDSEEYTTFWCRYDTYKYKVMPFGLTNSPATFQRFVNN 215
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I ++ L +I ++DDLL+ +++ V + + + L++ R + + V+
Sbjct: 216 I--FMDYLDRFLIAFVDDLLIYSENMVEHQIHVKMVLERLRATRLQAAIHKCKF-SVERT 272
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWS 262
++LG + T D + EK I + T WS
Sbjct: 273 KFLGFI--VTKDGIEVNQEKIKAITEWKAPTTIFGIWS 308
>gi|326677013|ref|XP_003200730.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1147
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 143/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 427 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 484
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 485 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 540
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ Q+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 541 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 598
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V D S G GAI+
Sbjct: 599 APLTSLTSSKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDVSEVGVGAIL 658
Query: 294 DNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 659 SQRSSSDGKIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 718
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 719 HKN-LEYI------RSAKRLNSRQARWALFFGRFNFTIS--YRPGSKNIKPDALSR 765
>gi|270006313|gb|EFA02761.1| hypothetical protein TcasGA2_TC008494 [Tribolium castaneum]
Length = 1453
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ G + +DL Y +P+ +++ S V Y +PFGL +AP+ F +
Sbjct: 662 DRLQGGVYFTSLDLRSGYHQIPLSEESKKYTSFVTPFGQYEYNRVPFGLTNAPRTFQRFM 721
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
N I L+ VYLDD+LL +D + L+S ++NL++
Sbjct: 722 NKI---LKPARENAAVYLDDVLLHAKDVNEALQNLQKVFEILRSEGLTLNLKK 771
>gi|189236290|ref|XP_001815266.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1446
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 696 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 755
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 756 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 813
Query: 223 TCQYLG 228
+YLG
Sbjct: 814 I-EYLG 818
>gi|391335912|ref|XP_003742330.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 745
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
++DL+ AY +P+ + QR ++ L+ T L FGL +AP +F K + +
Sbjct: 382 QLDLADAYLQLPLDENSQRVTTITTHRGLFQYTRLVFGLKTAPSIFQKTIEQVL-----M 436
Query: 173 GMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
GM V+VYLDD+L+ D+ + + LQ + + LE+ + V +YLG++
Sbjct: 437 GMEGVLVYLDDILVMAPDTERHDQRLNRVLQRLQDSGFHLKLEK-CYFHVPKVKYLGMV 494
>gi|326677758|ref|XP_003200905.1| PREDICTED: hypothetical protein LOC100331485 [Danio rerio]
Length = 1474
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 85 RAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSV 135
R L +K + ++ F R+ + ++R ++ +DL + Y+ VP+ + + + +
Sbjct: 1097 RVCLDFRKLNAVSKFDAYPMPRIDELVERIGRAKYITTLDLCKGYWQVPLEKTSREYTAF 1156
Query: 136 VYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LY +PFGL AP F +L N + LRN YLDD+++
Sbjct: 1157 RTPVGLYHFKTMPFGLHGAPATFQRLMNQV---LRNCEEYSAAYLDDVVI 1203
>gi|32489476|emb|CAE05830.1| OSJNBa0028M15.22 [Oryza sativa Japonica Group]
Length = 1324
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 57/370 (15%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 459 YRALNEVTIKNKYPLPQIDDLFDQLKGATVFSKIDLHSGYHQLRIREEDIPKTAFTTRYG 518
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 519 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHYLRLV 576
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ----RYLLTLT 256
+ L+ + L + W + ++LG + + +K + ++ ++ + T+T
Sbjct: 577 LGKLREHQLYAKLSKCEFW-LSEVKFLGHV----ISAKGVAVDPETVTAVTDWKQPKTVT 631
Query: 257 QIQ--W---------WSVALHR----------SSP--IFPQAPQVF-VSTDASNSGWGAI 292
QI+ W WS + SSP I P + F V DAS G G +
Sbjct: 632 QIRSFWLLKKEEKFVWSPQCEKAFQTLKERLVSSPVLILPDTRKDFLVYYDASRQGLGCV 691
Query: 293 V--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSY 347
+ + H + H+ + + E+ AV AL+ L I +D+++ + Y
Sbjct: 692 LMQEGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKS-LKY 750
Query: 348 IHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLL-- 405
I + + + R +E + D V Y PGK N AD+LSR+ ++
Sbjct: 751 IFTQSDL-NLRQRRWLELIKDYDV------GIHYHPGKANVVADALSRKSHCNTLNVRGI 803
Query: 406 -PEVTQHIFA 414
PE+ Q + A
Sbjct: 804 PPELNQQMEA 813
>gi|125803524|ref|XP_001343088.1| PREDICTED: hypothetical protein LOC100003575 [Danio rerio]
Length = 1496
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 85 RAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSV 135
R L +K + ++ F R+ + ++R ++ +DL + Y+ VP+ + + + +
Sbjct: 1097 RVCLDFRKLNAVSKFDAYPMPRIDELVERIGRAKYITTLDLCKGYWQVPLEKTSREYTAF 1156
Query: 136 VYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LY +PFGL AP F +L N + LRN YLDD+++
Sbjct: 1157 RTPVGLYHFKTMPFGLHGAPATFQRLMNQV---LRNCEEYSAAYLDDVVI 1203
>gi|241948055|ref|XP_002416750.1| transposable element polyprotein, putative [Candida dubliniensis
CD36]
gi|223640088|emb|CAX44334.1| transposable element polyprotein, putative [Candida dubliniensis
CD36]
Length = 923
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L +D+ Q Y+ + I S Q + YC LPFGL APQVF ++
Sbjct: 751 LHNAKIFSTLDMKQGYYQLKIHESTQPHTAFRVPGGTYCFQVLPFGLTDAPQVFG---SY 807
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+A+ L+ + VYLDD+L+
Sbjct: 808 VADLLQEFAVFTRVYLDDILV 828
>gi|189533692|ref|XP_001921559.1| PREDICTED: hypothetical protein LOC566211 [Danio rerio]
Length = 1496
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 85 RAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSV 135
R L +K + ++ F R+ + ++R ++ +DL + Y+ VP+ + + + +
Sbjct: 1097 RVCLDFRKLNAVSKFDAYPMPRIDELVERIGRAKYITTLDLCKGYWQVPLEKTSREYTAF 1156
Query: 136 VYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LY +PFGL AP F +L N + LRN YLDD+++
Sbjct: 1157 RTPVGLYHFKTMPFGLHGAPATFQRLMNQV---LRNCEEYSAAYLDDVVI 1203
>gi|189236284|ref|XP_001815208.1| PREDICTED: similar to orf [Tribolium castaneum]
gi|270005484|gb|EFA01932.1| hypothetical protein TcasGA2_TC007546 [Tribolium castaneum]
Length = 1475
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 696 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 755
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 756 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 813
Query: 223 TCQYLG 228
+YLG
Sbjct: 814 I-EYLG 818
>gi|270005482|gb|EFA01930.1| hypothetical protein TcasGA2_TC007544 [Tribolium castaneum]
Length = 955
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 647 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 706
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 707 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 764
Query: 223 TCQYLG 228
+YLG
Sbjct: 765 I-EYLG 769
>gi|270017030|gb|EFA13476.1| hypothetical protein TcasGA2_TC012973 [Tribolium castaneum]
Length = 1233
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 665 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 724
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 725 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 782
Query: 223 TCQYLG 228
+YLG
Sbjct: 783 I-EYLG 787
>gi|147826806|emb|CAN63950.1| hypothetical protein VITISV_032357 [Vitis vinifera]
Length = 1545
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 688 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 747
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+ YLDD+++
Sbjct: 748 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVXYLDDIVI 790
>gi|388854837|emb|CCF51518.1| uncharacterized protein [Ustilago hordei]
Length = 536
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L++ K+DL AY V I ++ + + LY +PFGL +AP F L N
Sbjct: 295 LLRKAKIYTKLDLKAAYNLVRIAEGNEWKTAFGTQLGLYEYLVMPFGLVNAPAHFQSLIN 354
Query: 164 WIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I Y +G+ ++VYLDD L+ + + R + L++ R L + + T
Sbjct: 355 QI--YCDIIGVYMVVYLDDFLIFSNNEREHIEHVRTVLGRLKAWRLFAKLSKCT-FHTNT 411
Query: 224 CQYLGIMWNPTLDSKSLPLEKQSTIQRYLL 253
++L + P+ S + +K TI+ +L+
Sbjct: 412 VEFLSYIIKPS--SIEMDPDKIKTIKEWLM 439
>gi|308475765|ref|XP_003100100.1| hypothetical protein CRE_21296 [Caenorhabditis remanei]
gi|308265905|gb|EFP09858.1| hypothetical protein CRE_21296 [Caenorhabditis remanei]
Length = 1034
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 88 LSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYC 143
LS KF L L+R F D Y HV I + FL+ D Y
Sbjct: 207 LSPPKFTLETWKHAAPELRRMSFAATFDFKSGYHHVKIEENSSDFLAFSLTDPPTAPFYK 266
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LPFGL++AP +F K+ I R G++V +Y+DD L+
Sbjct: 267 YRALPFGLSTAPWLFTKIFRPIVGKWRREGIKVWLYIDDGLV 308
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 248 IQRYLLTLTQIQWWSVALHRSSPIFPQA---PQVFVSTDASNSGWGAIVDN------HSL 298
I++ L +I++WS + R S + P V TDAS G GA++ N +
Sbjct: 432 IEKTKGELAEIRFWSENIRRLSSTTLEENFRPVWRVYTDASADGMGALLKNLEGEVVCRI 491
Query: 299 GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFK 358
V +D + ++E+ A+R L R++ V+ D+Q V+ + K G+ + +
Sbjct: 492 SEVGADTFKSESSAMRELKAMR-MLARRIAGWIRGAVVCYLDSQAAVAILKK--GSMNSE 548
Query: 359 LLREVEALFD-LAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWG 417
E ++D L N+ + +IP + N AD SR + DW + +V +WG
Sbjct: 549 WQEIAEQVWDALQTVGNVRFL--WIPRELNKEADFASRDFDFDDWGVDQKVFLWAQTRWG 606
Query: 418 VPEIDLFATANSAA--FLVQGGPLKFPDGIN 446
+ D FA +A P K G N
Sbjct: 607 KFKCDWFADEANAKTQLFYSRDPCKCSQGAN 637
>gi|292615051|ref|XP_002662530.1| PREDICTED: hypothetical protein LOC100333686 [Danio rerio]
Length = 1470
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 85 RAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSV 135
R L +K + ++ F R+ + ++R ++ +DL + Y+ VP+ + + + +
Sbjct: 1071 RVCLDFRKLNAVSKFDAYPMPRIDELVERIGRAKYITTLDLCKGYWQVPLEKTSREYTAF 1130
Query: 136 VYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LY +PFGL AP F +L N + LRN YLDD+++
Sbjct: 1131 RTPVGLYHFKTMPFGLHGAPATFQRLMNQV---LRNCEEYSAAYLDDVVI 1177
>gi|327262238|ref|XP_003215932.1| PREDICTED: hypothetical protein LOC100563775 [Anolis carolinensis]
Length = 907
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
LPFG+ +AP+VF K + YL G+ V Y+DD LL L + ++ LQ
Sbjct: 493 LPFGICTAPRVFTKCMAIVTCYLHVQGITVFPYIDDWLLVADSWHQLLHNIQFTISLLQD 552
Query: 207 LRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLE 243
L VN ++S L P Q Q++G N +L ++ LE
Sbjct: 553 LGLVVNGDKSHLQPQQCIQFIGARLN-SLSGRACLLE 588
>gi|16924104|gb|AAL31683.1|AC092390_4 putative polyprotein [Oryza sativa Japonica Group]
gi|108709934|gb|ABF97729.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 962
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + V R LY T + FGL +AP F L
Sbjct: 402 DQLKGASIFSKIDLRSGYHQLKIRQEDIPKTAFVIRYGLYEFTVMAFGLTNAPAYFMNLM 461
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
N I ++ L V+V++DD+L+ +++ + R + L+ + L + W
Sbjct: 462 NKI--FMEYLDQFVVVFIDDILIYSKNEEEHKQHLRLVLEKLRQHQLYAKLSKCEFW 516
>gi|189236296|ref|XP_001815322.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1271
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 492 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 551
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 552 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 609
Query: 223 TCQYLG 228
+YLG
Sbjct: 610 I-EYLG 614
>gi|4432807|gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1611
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D L + KIDL+ Y +PI P+ R + R
Sbjct: 715 YRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYD 774
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +PFGL +AP F K+ N + + L VI++++D+L+ ++ + RA
Sbjct: 775 HFEFVVMPFGLTNAPAAFMKMMNGV--FRDFLDEFVIIFINDILVYSKSWEAHQEHLRAV 832
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+ L + W
Sbjct: 833 LERLREHELFAKLSKCSFW 851
>gi|391331472|ref|XP_003740170.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 756
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
++DL+ AY +P+ + QR ++ L+ T L FGL +AP +F K + +
Sbjct: 556 QLDLADAYLQLPLDENSQRVTTITTHRGLFQYTRLVFGLKTAPSIFQKTIEQVL-----M 610
Query: 173 GMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
GM V+VYLDD+L+ D+ + + LQ + + LE+ + V +YLG++
Sbjct: 611 GMEGVLVYLDDILVMAPDTERHDQRLNRVLQRLQDSGFHLKLEK-CYFHVPKVKYLGMV 668
>gi|308456407|ref|XP_003090646.1| hypothetical protein CRE_09882 [Caenorhabditis remanei]
gi|308262093|gb|EFP06046.1| hypothetical protein CRE_09882 [Caenorhabditis remanei]
Length = 1305
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F +IDL+ AY + + ++ L + L+ LPFG+ +AP +F ++ +
Sbjct: 482 LNGGKFFSQIDLADAYLQIEVDDDSKKLLVINTHKGLFHYNRLPFGVKAAPGIFQQVMDT 541
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER-SVLWPVQT 223
+ L V YLDD+++ + + + + S + + LE+ S L P
Sbjct: 542 MLAGLDG----VSCYLDDIIVTGCSIEEHNQRVKKVIERIASFGFRMRLEKCSFLMP--E 595
Query: 224 CQYLGIMWN---------PTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVA-LHRSSP 270
Q+LG + N D K++P K + R L L Q V LHR P
Sbjct: 596 IQFLGFVINEQGRKPDPQKIADIKAMPAPKNAIEVRSFLGLIQFYGTFVRDLHRLRP 652
>gi|308482634|ref|XP_003103520.1| hypothetical protein CRE_28691 [Caenorhabditis remanei]
gi|308259941|gb|EFP03894.1| hypothetical protein CRE_28691 [Caenorhabditis remanei]
Length = 1059
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F +IDL+ AY + + ++ L + L+ LPFG+ +AP +F ++ +
Sbjct: 394 LNGGKFFSQIDLADAYLQIEVDDDSKKLLVINTHKGLFHYNRLPFGVKAAPGIFQQVMDT 453
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER-SVLWPVQT 223
+ L V YLDD+++ + + + + S + + LE+ S L P
Sbjct: 454 MLAGLDG----VSCYLDDIIVTGCSIEEHNQRVKKVIERIASFGFRMRLEKCSFLMP--E 507
Query: 224 CQYLGIMWN---------PTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVA-LHRSSP 270
Q+LG + N D K++P K + R L L Q V LHR P
Sbjct: 508 IQFLGFVINEQGRKPDPQKIADIKAMPAPKNAIEVRSFLGLIQFYGTFVRDLHRLRP 564
>gi|313227295|emb|CBY22441.1| unnamed protein product [Oikopleura dioica]
Length = 804
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 11/158 (6%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
FL++G + K+D + HV + P + Y + FG+ + P V+ + +
Sbjct: 276 FLKKGMLMAKVDDKSGFHHVQLDPFSRNMACCQYGGIQFRYKAAAFGIPAVPGVYQLVNS 335
Query: 164 WIANYLRNLGMRVIVYLDDLLL------GNQDSVLLRSQARAAVATLQSLRWS-----VN 212
N LR G +YLDD + +++ L R + L L + +N
Sbjct: 336 VPVNVLRKAGHHCFLYLDDRIFLIEPKSKSEEQALRRGELVPEGPYLGLLLMTAAGTYIN 395
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR 250
+SVL P +YLG + + +P EK ++
Sbjct: 396 RAKSVLLPTSKMEYLGFFLDTDRCTIKIPTEKLEKFKK 433
>gi|356502993|ref|XP_003520298.1| PREDICTED: uncharacterized protein LOC100797944 [Glycine max]
Length = 893
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + KIDL Y + IR + + + LY +PFGL +AP F +L
Sbjct: 376 DELHGACYFSKIDLKSGYNQIRIREGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLM 435
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
N I LR +G V+VY DD+L+ + L ++ + L+ + NLE+ +
Sbjct: 436 NHI---LREFIGKFVVVYFDDILIYSTSLDLHIDHLKSVLTVLREEQLYANLEKCIF 489
>gi|212530975|ref|XP_002145644.1| retrovirus polyprotein, putative [Talaromyces marneffei ATCC 18224]
gi|210071008|gb|EEA25097.1| retrovirus polyprotein, putative [Talaromyces marneffei ATCC 18224]
Length = 498
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 130/328 (39%), Gaps = 46/328 (14%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
+ + K+D+ Q + + + + R + +PFGL + P F +L N
Sbjct: 60 ISQAKIFTKLDIRQGFHCIRMHKDSSDLTTFRCRYGTFKYGVMPFGLTNGPATFQRLIND 119
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I ++ L +I ++DDLL+ ++++ R + L+ ++++ + V T
Sbjct: 120 I--FIDCLDKFLIAFIDDLLIYSENATEHEIHVRTVLQRLRDTGLQASIKKCE-FHVTTT 176
Query: 225 QYLG-------IMWNPTLDSKSLPLEKQSTIQ------------RYLLTLTQIQWWSVAL 265
+YLG I +P L + +T+Q R + ++ AL
Sbjct: 177 KYLGFIITPEGIKVDPVKVETVLSWKTSTTVQGVQSFLGFCNFYRKFIAEYTLEKLKTAL 236
Query: 266 HRSSPIFPQAPQ--VFVSTDASNSGWGAIVDNHSLGGVW----------SDHQEMWHINL 313
+ + P V TDAS+ A++ G W S + + I+
Sbjct: 237 ALAPVLVHYDPSRPTRVETDASDGVVAAVLSQLCEDGNWHLVGYYSASMSSAEHNYDIHN 296
Query: 314 KEMFAVRSALERKLPVL----QDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDL 369
KEM A+ A P L + + + +D++ + ++ + K+L +A +
Sbjct: 297 KEMLAIIKAFREWRPELIGLQRQESFEVLTDHRALEYFM-------TTKVLSARQARW-Y 348
Query: 370 AVRHNITLMARYIPGKFNTWADSLSRQK 397
+ RY PGK N AD+L+R++
Sbjct: 349 EFLQEFHFVLRYRPGKANVLADTLTRRE 376
>gi|241690754|ref|XP_002412910.1| hypothetical protein IscW_ISCW011925 [Ixodes scapularis]
gi|215506712|gb|EEC16206.1| hypothetical protein IscW_ISCW011925 [Ixodes scapularis]
Length = 737
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 100 RVPDF---LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
RV D L G K+DL AY + ++ + ++++++ L+ T LPFG+ASAP
Sbjct: 433 RVEDLWSALSGGQKFSKLDLRDAYQQLVLQDAARKYVTISTTMGLFQYTRLPFGVASAPA 492
Query: 157 VFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
+F + + N R GMR V VYLDD+L+ D R + LQ + L++
Sbjct: 493 IFQR---EMGNLFR--GMRHVAVYLDDILVTGTDDGDHLQNLRKVLTRLQDAGLKLRLDK 547
Query: 216 SVLWPVQTCQYLG 228
+ + +YLG
Sbjct: 548 CMFL-TPSVEYLG 559
>gi|189236280|ref|XP_001815148.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 3364
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 1295 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 1354
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + R L+ ++ L + + Q
Sbjct: 1355 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLKLSKCCFFGSQ 1412
Query: 223 TCQYLG 228
+YLG
Sbjct: 1413 M-EYLG 1417
>gi|270016329|gb|EFA12775.1| hypothetical protein TcasGA2_TC005018 [Tribolium castaneum]
Length = 997
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANY 168
++ IDL +Y+ +P+ P +++ + +Y Y LPFGL +A F++ + +
Sbjct: 415 YMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTE 474
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+R V+ Y+DDLL+ ++ R L+ R +NLE+S
Sbjct: 475 VREF---VVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMKINLEKS 519
>gi|326671771|ref|XP_003199522.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1297
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 151/390 (38%), Gaps = 82/390 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 389 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 448
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ R V VYLDD+L+ + + R
Sbjct: 449 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNRFVFVYLDDILIFSPSLKVHTQHVRQ 505
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V VQ+ +LG + + PT DS+ L
Sbjct: 506 VLQRLLENQLYVKAEKCVFH-VQSVSFLGFIISAGEIQADPCKVKSVAEWPTPDSRKA-L 563
Query: 243 EK----QSTIQRYLLTLTQIQW-------------WSV----ALHRSSPIFPQAP----- 276
++ + +R++ QI W V A + F AP
Sbjct: 564 QRFLGFANFYRRFIRNFGQIAAPLTALTSPKVPFKWEVDAQEAFDKLKSRFVSAPVLSIP 623
Query: 277 ----QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAVRS 321
Q V DAS+ G GA++ S G V + + + I +E+ AVR
Sbjct: 624 DPERQFIVEVDASDVGVGAVLSQRSRLDGKVHPCAFFSHRLNPSERNYDIGNRELLAVRL 683
Query: 322 ALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
AL L+ L+ +D++ + YI +S + L +A + L R N TL
Sbjct: 684 ALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSARRLSSRQARWALFFGRFNFTLS 736
Query: 379 ARYIPGKFNTWADSLSRQKELPDWHLLPEV 408
Y PG N D+LSR E P P+
Sbjct: 737 --YRPGSKNIKPDALSRLFEAPGEREPPDT 764
>gi|301608127|ref|XP_002933648.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1391
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 149/364 (40%), Gaps = 75/364 (20%)
Query: 101 VPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQV 157
+P+ QR K+DL AY + IR + + R + +PFGL +AP
Sbjct: 583 IPELFQRLRSAKVFSKLDLRGAYNLIRIRKGDEWKTAFRTRYGHFEYLVMPFGLCNAPAT 642
Query: 158 FAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
F N I + L VIVYLDD+L+ + R + A L++ + LE+
Sbjct: 643 FQHFVNDI--FRDFLDHFVIVYLDDILVFSPSLEEHRVHVKKVFARLRAHKLFAKLEKCE 700
Query: 218 LWPVQTCQYLGIMWNP---TLDSKSL--------PLEKQST---------IQRYLLTLTQ 257
+ + ++LG++ +P ++DS+ + P ++++ ++++ ++
Sbjct: 701 -FERSSIEFLGLVISPDGMSMDSRKVSAVLDWPTPGDRKAVQRFVGFANFYRKFIKDFSK 759
Query: 258 IQWWSVALHRSSPIF---PQAPQVFV-----------------------STDASNSGWGA 291
I +L S F P+A Q F+ DAS GA
Sbjct: 760 IIAPITSLTSSIKKFHWSPEAQQAFIDLKKRFTTAPILRHSDPAYPFTLEVDASEYAIGA 819
Query: 292 IVDNHS-----------LGGVWSDHQEMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQ 338
++ + S ++ + + +E+ A++SA + R L + +L+
Sbjct: 820 VLSQRTDFNCQLHPVAFFSRKLSQSEQNYDVGDRELLAIKSAFQEWRHLLEGANHPILVF 879
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQK 397
SD++ + Y+ +S K LR +A + L R N + R PG N AD+LSR
Sbjct: 880 SDHKN-LEYL------RSAKRLRPRQARWALFFSRFNFHVTFR--PGSKNGKADALSRMF 930
Query: 398 ELPD 401
P+
Sbjct: 931 PAPE 934
>gi|147820163|emb|CAN60430.1| hypothetical protein VITISV_021534 [Vitis vinifera]
Length = 938
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 579 YRALNKVTVKNKYPIPLIVDLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 638
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 639 SYEFLVMPFGLTNAPATFYTLMNNIFHPYLDKF---VVVYLDDIVI 681
>gi|88595517|gb|ABD43065.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 52.4 bits (124), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKNEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + + W
Sbjct: 124 LDILRTERLNAKFSKCEFW 142
>gi|255726280|ref|XP_002548066.1| hypothetical protein CTRG_02363 [Candida tropicalis MYA-3404]
gi|240133990|gb|EER33545.1| hypothetical protein CTRG_02363 [Candida tropicalis MYA-3404]
Length = 1299
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 147/396 (37%), Gaps = 93/396 (23%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
+ + +DG + L + +L + F +P D L +DL Y V
Sbjct: 345 IFVKKKDGSKRLC-VDYRALNDITVKERFPIPLIDELFDSLSGATIFSTLDLHSGYHQVA 403
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
I Q + V R Y +PFGL +AP F +L N I ++ + +YLDDL+
Sbjct: 404 IAKEDQEKTAFVTRFGQYAWKVMPFGLCNAPATFQRLMNDI--FMDTFDKYLNIYLDDLI 461
Query: 185 LGNQD---------SVLLRSQARAAVATLQSLRW---SVNLERSVL-------------- 218
+ ++D VL R + +A + + SV ++
Sbjct: 462 IYSRDRESHEKHVREVLTRLRKNGLIAKKKKCHFFQSSVKYLGHIITDKGIEPDEEKIAA 521
Query: 219 ---WP-----VQTCQYLGIM-----WNPTLDSKSLPL------------EKQSTIQRYLL 253
WP Q +LG++ + P + + P+ ++Q +
Sbjct: 522 IKNWPPIKSVKQAQSFLGLVGYYRKFIPQMSALCGPIHDFIAGKSNWGTDQQEGFDKLRE 581
Query: 254 TLTQIQWWSVALHRSSP--IFPQAPQVFVS-TDASNSGWGAIVDNHSLGGVWSD------ 304
+LT+ SP I P FV TDASNS GA++ G +
Sbjct: 582 SLTK-----------SPILILPSQEDTFVVFTDASNSCSGAVLHQVDSAGKFKGVVAYDS 630
Query: 305 -----HQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKL 359
H+ + + KE AV AL + L + ++ +D++++ S + +
Sbjct: 631 YKFGVHELKYTVREKECLAVVKALRKWKHYLAGRRFILYTDHESLRSLHYNKDAFGRINR 690
Query: 360 LREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
A +D+ +RH I G N+ AD++SR
Sbjct: 691 WIGFLAEYDMEIRH--------IKGSRNSVADAISR 718
>gi|326669078|ref|XP_003198929.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1371
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 149/383 (38%), Gaps = 82/383 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY V IR + +
Sbjct: 386 YRGLNDITIKNRYPLPLMSSAFELLQGAQVFTKLDLRNAYHLVRIREGDEWKSAFNTPTG 445
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + R
Sbjct: 446 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNQFVFVYLDDILIFSPSLQAHTQHVRQ 502
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V Q+ +LG + + PT DS+ L
Sbjct: 503 VLQRLLENQLFVKAEKCVFH-TQSVSFLGFLISAGEISADPAKVRAVAEWPTPDSRKA-L 560
Query: 243 EK----QSTIQRYLLTLTQIQWWSVALHRSSPIF-------------------------P 273
++ + +R++ QI AL S +F P
Sbjct: 561 QRFLGFANFYRRFIRNFGQIAAPLTALTSSKVLFRWGDKAQEAFDKLKSRFISAPVLSIP 620
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAVRS 321
Q F V DAS G GA++ SL G V + + + I +E+ AVR
Sbjct: 621 DPKQQFIVEVDASEVGVGAVLSQRSLQDGKVHPCAFFSHRLTPTERNYDIGNRELLAVRL 680
Query: 322 ALERKLPVLQ--DKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
AL L+ ++ ++ +D++ + YI+ S K L +A + L R N TL
Sbjct: 681 ALGEWRHWLEGAEQPFVVWTDHRN-LEYIN------SAKRLNARQARWSLFFSRFNFTLS 733
Query: 379 ARYIPGKFNTWADSLSRQKELPD 401
Y PG N DSLSR E P+
Sbjct: 734 --YRPGSKNVKPDSLSRLFEAPE 754
>gi|326665532|ref|XP_003198065.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1240
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 151/390 (38%), Gaps = 82/390 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 389 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 448
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ R V VYLDD+L+ + + R
Sbjct: 449 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNRFVFVYLDDILIFSPSLKVHTQHVRQ 505
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V VQ+ +LG + + PT DS+ L
Sbjct: 506 VLQRLLENQLYVKAEKCVFH-VQSVSFLGFIISAGEIQADPCKVKAVAEWPTPDSRKA-L 563
Query: 243 EK----QSTIQRYLLTLTQIQW-------------WSV----ALHRSSPIFPQAP----- 276
++ + +R++ QI W V A + F AP
Sbjct: 564 QRFLGFANFYRRFIRNFGQIAAPLTALTSPKVPFKWEVDAQEAFDKLKSRFVSAPVLSIP 623
Query: 277 ----QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAVRS 321
Q V DAS+ G GA++ S G V + + + I +E+ AVR
Sbjct: 624 DPERQFIVEVDASDVGVGAVLSQRSRLDGKVHPCAFFSHRLNPSERNYDIGNRELLAVRL 683
Query: 322 ALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
AL L+ L+ +D++ + YI +S + L +A + L R N TL
Sbjct: 684 ALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSARRLSSRQARWALFFGRFNFTLS 736
Query: 379 ARYIPGKFNTWADSLSRQKELPDWHLLPEV 408
Y PG N D+LSR E P P+
Sbjct: 737 --YRPGSKNIKPDALSRLFEAPGEREPPDT 764
>gi|308480981|ref|XP_003102696.1| hypothetical protein CRE_30022 [Caenorhabditis remanei]
gi|308260782|gb|EFP04735.1| hypothetical protein CRE_30022 [Caenorhabditis remanei]
Length = 1083
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCL 147
+F L N FL+ +F D Y H+ I + LS + + L
Sbjct: 309 RFKLENMKTAWPFLENANFAATFDFKSGYHHIKIHRDSRDLLSFSLSNPPAAPYFSFRGL 368
Query: 148 PFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD-LLLGNQDSVLLRSQAR 198
PFGLA+AP +F K+ + R G+++ +YLDD L++G + + R+ R
Sbjct: 369 PFGLATAPWLFTKIFKVLVRKWRAEGVKIFLYLDDGLIVGETEYEVARASRR 420
>gi|88595605|gb|ABD43109.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 52.0 bits (123), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + +R S + R
Sbjct: 6 YRELSKMTIKNKYPLPRIDDLFDQLQGSTVFSKIDLRSGYYQLRVRDSDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++D AR
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKL--FIEYLDKCVVVFIDDILIYSKDE---EEHARHL 120
Query: 201 VATLQSLR 208
L+ LR
Sbjct: 121 HIVLEILR 128
>gi|406698503|gb|EKD01739.1| retrotransposon nucleocapsid protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 1789
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL AY V IR + +R LY +PFGL +AP F +L
Sbjct: 912 DRLSSAKVFTKIDLRGAYHLVRIRAGDE--WKTAFRTHLYEYLVMPFGLCNAPATFQRLV 969
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSV 191
N + + L L V+VYLDD+L+ ++D
Sbjct: 970 NHVFHDL--LESCVVVYLDDILIFSEDKA 996
>gi|326673582|ref|XP_003199929.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1231
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 152/392 (38%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 508 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 567
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 568 I--FRDMLNKWVIVYIDDILIYSNSLSEHIQHVRAVLKRL--IENQLYAKSSKCEFHQTC 623
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 624 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 683
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 684 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 743
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 744 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 803
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 804 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEI 856
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ QW + + L A N+ +
Sbjct: 857 PDEPIIKSPLIVAPIQWVIDQEILQAAENNPS 888
>gi|427798111|gb|JAA64507.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1010
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
V D L + +DL Y+ +P+ P+ + + V D LY +PFGL +AP +F +
Sbjct: 232 VIDCLHSASYFSSVDLRSGYWQIPMHPADKEKTAFVTPDGLYQFNVMPFGLCNAPAIFER 291
Query: 161 LTNWIANYLRNLGMRV-IVYLDDLLL 185
+ I LR L V + YLDD+++
Sbjct: 292 FMDSI---LRGLKWEVCLCYLDDVVI 314
>gi|391326386|ref|XP_003737698.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 1509
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + ++DL++AY +P+ Q L++ L+ M L +G+ +AP +F +L +
Sbjct: 491 LNGGRYFSQLDLAEAYLQIPVESQSQELLTINTAKGLFKMKRLAYGVKTAPSLFQRLMDT 550
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
I N L YLDD+L+
Sbjct: 551 ITNDLPG----TTAYLDDILV 567
>gi|308493269|ref|XP_003108824.1| hypothetical protein CRE_11685 [Caenorhabditis remanei]
gi|308247381|gb|EFO91333.1| hypothetical protein CRE_11685 [Caenorhabditis remanei]
Length = 1143
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCL 147
+F L N FL+ +F D Y H+ I + LS + + L
Sbjct: 325 RFKLENMKTAWPFLENANFAATFDFKSGYHHIKIHRDSRDLLSFSLSNPPAAPYFFFKGL 384
Query: 148 PFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL 207
PFGLA+AP +F K+ + R G+++ +YLDD L+ + + +R L
Sbjct: 385 PFGLATAPWLFTKIFKVLVRKWRAEGIKMFLYLDDGLIVGETEYEVARASRRVRGDLAEA 444
Query: 208 RWSVNLERSVLWPVQTCQYLG 228
V E+S P +LG
Sbjct: 445 GVCVAEEKSFWVPDAKFTWLG 465
>gi|169116552|gb|ACA42573.1| polymerase [Duck hepatitis B virus]
Length = 841
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 20/235 (8%)
Query: 4 PVFRQILKAISLKRAIGLLEKREIWDVSTLISWISDHPPNQDSFFEVARHTAILLLLCSG 63
PV+R S K + LE+ +W + SW PN R T L L+
Sbjct: 405 PVYRARTSGASDKNSP--LEEENVWYLRGNTSW-----PN--------RITGKLFLVDKN 449
Query: 64 RRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHV 123
R + L+ F G A + ++ N + L G + +DLSQA++H+
Sbjct: 450 SRNTEEARLVVDFSQFSK-GKNA-MRFPRYWSPNLSTLRRILPVGMPRISLDLSQAFYHL 507
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-RNLGMRVIVYLDD 182
P+ P+ L+V +Y P G+ +P + T + + + R + Y+DD
Sbjct: 508 PLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISRRFNVWTFTYMDD 567
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV--LWPVQTCQYLGIMWNPTL 235
LL + ++ L + + A + LQ L +N +++ PV ++LG + T
Sbjct: 568 FLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPSPVNEIRFLGYQIDETF 622
>gi|391326403|ref|XP_003737706.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 1575
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + ++DL++AY +P+ Q L++ L+ M L +G+ +AP +F +L +
Sbjct: 557 LNGGRYFSQLDLAEAYLQIPVESQSQELLTINTAKGLFKMKRLAYGVKTAPSLFQRLMDT 616
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
I N L YLDD+L+
Sbjct: 617 ITNDLPG----TTAYLDDILV 633
>gi|147809372|emb|CAN71204.1| hypothetical protein VITISV_006371 [Vitis vinifera]
Length = 737
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D +V KIDL Y + IR + S +D LY
Sbjct: 473 AINKITIKYRFPIPRLBDMLDMMVGSVIFSKIDLRSGYHQIXIRXGDEXXTSFKTKDGLY 532
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+ FGL +AP F ++ + +G V+VY DD+L+ ++ + +
Sbjct: 533 EWLVMXFGLTNAPSTFXRIMTQVLKPF--IGRFVVVYFDDILIYSRSCEDHEEHLKQVMR 590
Query: 203 TLQSLRWSVNLERSVL 218
TL++ ++ +NL++
Sbjct: 591 TLRAEKFYINLKKCTF 606
>gi|326670517|ref|XP_003199232.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1302
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 151/390 (38%), Gaps = 82/390 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 389 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 448
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ R V VYLDD+L+ + + R
Sbjct: 449 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNRFVFVYLDDILIFSPSLKVHTQHVRQ 505
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V VQ+ +LG + + PT DS+ L
Sbjct: 506 VLQRLLENQLYVKAEKCVFH-VQSVSFLGFIISAGEIQADPCKVKAVAEWPTPDSRKA-L 563
Query: 243 EK----QSTIQRYLLTLTQIQW-------------WSV----ALHRSSPIFPQAP----- 276
++ + +R++ QI W V A + F AP
Sbjct: 564 QRFLGFANFYRRFIRNFGQIAAPLTALTSPKVPFKWEVDAQEAFDKLKSRFVSAPVLSIP 623
Query: 277 ----QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAVRS 321
Q V DAS+ G GA++ S G V + + + I +E+ AVR
Sbjct: 624 DPERQFIVEVDASDVGVGAVLSQRSRLDGKVHPCAFFSHRLNPSERNYDIGNRELLAVRL 683
Query: 322 ALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
AL L+ L+ +D++ + YI +S + L +A + L R N TL
Sbjct: 684 ALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSARRLSSRQARWALFFGRFNFTLS 736
Query: 379 ARYIPGKFNTWADSLSRQKELPDWHLLPEV 408
Y PG N D+LSR E P P+
Sbjct: 737 --YRPGSKNIKPDALSRLFEAPGEREPPDT 764
>gi|291236769|ref|XP_002738310.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 981
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 13/185 (7%)
Query: 79 FQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYR 138
+L D+ S+ + + F L + K D++ A+ +P+ PS V +
Sbjct: 565 LNELIDKETFSMSYIRIDDAFAEIRRLNGNTHMCKFDITDAFKQIPLHPSIWHLHGVKWD 624
Query: 139 DTLYCMTCLPFGLASAPQVFAKLTN---WIANYLRNLGMRVIVY-LDDLLLGNQDSVLLR 194
D Y L FG S+P +F L+ WI + G++ I++ LDD L +Q+
Sbjct: 625 DKYYFFIRLVFGSRSSPNIFDLLSQAICWIV--IHKFGVKFILHLLDDFLTIDQEE---- 678
Query: 195 SQARAAVATLQSLRWSVNL---ERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRY 251
A ++A + + ++N+ L P Q +YLG+M N LP K S I+
Sbjct: 679 ETAMRSMAVMTMIFNTLNIPLAAHKTLGPSQELEYLGVMINSKDMLAFLPANKISRIKEK 738
Query: 252 LLTLT 256
+ T
Sbjct: 739 ISEFT 743
>gi|147768682|emb|CAN76063.1| hypothetical protein VITISV_040632 [Vitis vinifera]
Length = 1453
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + + K+DL Y+ V + + + V R
Sbjct: 624 YRALNKVTIKNKYPIPLAAELFDRLSKASYFTKLDLRSGYWQVRVAAGDEGKTTCVXRYG 683
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N + +YL V+VYLDD+++
Sbjct: 684 SYEFLVMPFGLTNAPATFCNLMNDVLFDYLDXF---VVVYLDDIVV 726
>gi|18425257|gb|AAL69435.1|AC098565_17 Putative polyprotein [Oryza sativa]
gi|22725905|gb|AAN04915.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430208|gb|AAP52154.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 517 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTSRYG 576
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L + + ++ NL V+V++DD+L+ +Q + R
Sbjct: 577 LYEFTVMSFGLTNAPAFFMNLMDKV--FMENLDKFVVVFIDDILMYSQSEEDHQQHLRLV 634
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 635 LGKLREHQLYAKLSKCEFW-LSEVKFLG 661
>gi|147792159|emb|CAN62036.1| hypothetical protein VITISV_019703 [Vitis vinifera]
Length = 361
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVMVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|301609828|ref|XP_002934465.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1160
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 72/357 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + ++ R + +PFGL +AP F N
Sbjct: 321 LRSARVFTKLDLRGAYNLVRIRQGDEWKMAFRTRYGHFEYLVMPFGLCNAPATFQHFVND 380
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L + VIVYLDD+L+ + R + + L++ + LE+ + T
Sbjct: 381 I--FRDFLDLFVIVYLDDILIFSSSLEEHRRHVKQVFSRLRAHKLFAKLEKCEFERL-TI 437
Query: 225 QYLGIMWNP---TLDSKSLPL-------EKQSTIQR----------YLLTLTQIQWWSVA 264
++LG + +P ++DS+ + + +QR ++ ++I A
Sbjct: 438 EFLGFIISPEGMSMDSRKVSAVLDWPTPNSRKAVQRFVGFANFYRKFIKNFSKIISPITA 497
Query: 265 LHRSSPIF---PQAPQVF-----------------------VSTDASNSGWGAIVDNHS- 297
L S F P+A Q F + DAS GA++ +
Sbjct: 498 LTSSLKKFCWTPEAQQAFSDLKSRFTSAPILKHPDPTRPFVLEVDASEYAIGAVLSQRND 557
Query: 298 ----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSDNQTVV 345
S ++ + + +E+ A++SA + +L+ +L+ SD++ +
Sbjct: 558 VQSLLHPIAFFSKKLSSSEQNYDVGDRELLAIKSAFQEWRHLLEGAAHPILVFSDHKN-L 616
Query: 346 SYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKELPD 401
Y+ +S K LR +A + L R N + R PG N AD+LSR P+
Sbjct: 617 EYL------RSAKRLRPRQARWALFFSRFNFHVTFR--PGSKNGKADALSRLFPAPE 665
>gi|391339345|ref|XP_003744012.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 1509
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + ++DL++AY +P+ Q L++ L+ M L +G+ +AP +F +L +
Sbjct: 491 LNGGRYFSQLDLAEAYLQIPVESQSQELLTINTAKGLFKMKRLAYGVKTAPSLFQRLMDT 550
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
I N L YLDD+L+
Sbjct: 551 ITNDLPG----TTAYLDDILV 567
>gi|391331165|ref|XP_003740021.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 1429
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + ++DL++AY +P+ Q L++ L+ M L +G+ +AP +F +L +
Sbjct: 411 LNGGRYFSQLDLAEAYLQIPVESQSQELLTINTAKGLFKMKRLAYGVKTAPSLFQRLMDT 470
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
I N L YLDD+L+
Sbjct: 471 ITNDLPG----TTAYLDDILV 487
>gi|356506698|ref|XP_003522113.1| PREDICTED: uncharacterized protein LOC100796705 [Glycine max]
Length = 1010
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + KIDL Y + IR + + + LY +PFGL +AP F +L
Sbjct: 685 DELHGACYFSKIDLKSGYNQIRIREGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLM 744
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
N I +G V+VY DD+L+ + L ++ + L+ + NLE+ +
Sbjct: 745 NHILREF--IGKFVVVYFDDILIYSTSLDLHIDHLKSVLTVLREEQLYANLEKCIF 798
>gi|326431541|gb|EGD77111.1| hypothetical protein PTSG_12587 [Salpingoeca sp. ATCC 50818]
Length = 1315
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/371 (20%), Positives = 143/371 (38%), Gaps = 88/371 (23%)
Query: 93 FHLINHFRVPDFLQRGDFL------------VKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +NH + D D L +DL Y + + P + + V D
Sbjct: 756 FRRLNHISIKDRYPLPDMLSVLAKCAGHRLYTTLDLCSGYHQLRVHPQDEDTTAFVCDDG 815
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +PFG+A+ P VF +L + + + V+VYLDD+ V+ +
Sbjct: 816 QFAWRVMPFGIANGPPVFQRLMDRVTADIPG----VLVYLDDI-------VVFSNTKHQH 864
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL--------------GIMWNPTLDSKSLPLEKQS 246
+ TL+ + + ER L P + C++L GI +P + L K S
Sbjct: 865 LRTLRRVFQRLRDERLALKP-KKCEFLKPSLLFLGHVLSCHGISVDPDKVDAVMKLAKPS 923
Query: 247 T-------------IQRYLLTLTQI-----------QWWSV----------ALHRSSPIF 272
+ +R+L + I +W AL ++ +
Sbjct: 924 SKTELLSFLGTVNYYRRFLRNMEDIAAPLRELQDLAEWGEAHEHAFNALKQALCNATTLA 983
Query: 273 P---QAPQVFVSTDASNSGWGAIVDNHS-----LGGVWSDHQEMWHINLKEMFAVRSALE 324
P AP + DAS+ G GA+++ H + + + + I +E+ A+ AL+
Sbjct: 984 PPDHNAP-FIIRADASDKGIGAVLEQHGRPVEFMSKKLTSAEANYPIRQRELLAIVVALQ 1042
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPG 384
+ V + +D+++++ + + ++LR +E L + +++ Y PG
Sbjct: 1043 KWRHYFGFFTVEVITDHKSLLD-LQTQSKISERRILRWMETLAEFSIKWT------YTPG 1095
Query: 385 KFNTWADSLSR 395
N D+LSR
Sbjct: 1096 VDNHVPDTLSR 1106
>gi|449676882|ref|XP_002155304.2| PREDICTED: uncharacterized protein K02A2.6-like, partial [Hydra
magnipapillata]
Length = 1090
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTNWIANY 168
+ KIDL AY + + Q +V L TCLPFG+ +A +F + + + + +
Sbjct: 463 YFAKIDLKGAYHQIEMDKEAQEITTVNTPIGLLRWTCLPFGIKTASAIFQRAIESVVGDI 522
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
+ N+ I++ DD+ +G++++ L+S ++ L+ S+N +SV
Sbjct: 523 IPNM----IIFQDDICVGDKNAEELKSNLNKILSKLKESGMSINKRKSV 567
>gi|88595703|gb|ABD43158.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 52.0 bits (123), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + I+ S + R
Sbjct: 6 YRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRIKESDIPKAAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L VIV++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVIVFIDDILIYSKNQEEHAQHLRIV 123
Query: 201 VATLQSLR 208
+ TL++ R
Sbjct: 124 LDTLRAER 131
>gi|12698634|gb|AAK01619.1|AF314096_2 polymerase [Magnaporthe grisea]
Length = 1418
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 139/356 (39%), Gaps = 76/356 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
+ + F KID+ QA+ + + P H+ + + R + LPFGL + P F K N
Sbjct: 483 ISKARFFTKIDIRQAFHRIRMNPEHRDYTTFRTRYGTFRYNVLPFGLTNGPATFQKFINE 542
Query: 165 I-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I YL + Y+DD+L+ ++ ++ R + L+ ++++ +T
Sbjct: 543 ILMEYLDDF---CSAYMDDILIWSETEEEHQTHVRQVLERLKKAGLQADIKKCEFHVTET 599
Query: 224 CQYLGIM------------------WNPTLDSKSLP------------LEKQSTIQRYLL 253
++LG + W P K + + + S + + L
Sbjct: 600 -RFLGFIIGTKGVAVDPDKVAAVKQWAPPTTVKGVQSFLGFCNFYRKFVPEYSRVAKPLT 658
Query: 254 TLTQ----IQW---WSVALHRSSPIFPQAP---------QVFVSTDASNS-GWGAIVDNH 296
LT+ QW VA AP + V TDAS GA++ +
Sbjct: 659 NLTKKAVPFQWDEHCRVAFDTLKKALTSAPVLAHYQADYETRVETDASGGVVAGALLQQN 718
Query: 297 SLGGVW------SDHQEMWHINL----KEMFAVRSALERKLPVL---QDKVVLIQSDNQT 343
W S+ + +N KE+ AV AL+ P L + K V I +D++
Sbjct: 719 PNTQEWHPIAFFSETMQQAELNYPIHDKELLAVVRALKTWRPELMGTKKKFVAI-TDHKA 777
Query: 344 VVSYIHKEGGTKSFKLLREVEALF-DLAVRHNITLMARYIPGKFNTWADSLSRQKE 398
+ + K +LL +A + D ++N + Y PG N AD+L+R+ E
Sbjct: 778 LEYFSTK-------RLLNSRQAAWADFFSQYNFEIT--YRPGSENVLADALTRKAE 824
>gi|341890944|gb|EGT46879.1| hypothetical protein CAEBREN_12555 [Caenorhabditis brenneri]
Length = 1333
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL+ AY + ++ L + L+C LPFG+ +AP +F + +
Sbjct: 532 LNGGLYFTQIDLADAYLQCEVDEQAKQLLVINTHKGLFCYNRLPFGIEAAPGIFQQFMDK 591
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ N L YLDDL++ S+ + +Q + + +E+
Sbjct: 592 LINGLDGTS----AYLDDLIVTGSTIEEHNSRVHKLMQKIQDFGFRIRMEKCSFL-QHEI 646
Query: 225 QYLGIMWN 232
+YLG + N
Sbjct: 647 KYLGFIIN 654
>gi|147842289|emb|CAN65064.1| hypothetical protein VITISV_008583 [Vitis vinifera]
Length = 1126
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K++L Y+ V I + + V R
Sbjct: 623 YRALNKVTVKNKYPIPLIADLFDHLGRARYFTKLNLRSDYYQVRITEGDEPKTTSVTRYG 682
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL-GN 187
Y +PFGL +AP F L N I + YL V+VYLDD+++ GN
Sbjct: 683 SYDFLVMPFGLTNAPTTFCTLMNKIFHPYLDKF---VVVYLDDIIIYGN 728
>gi|147788113|emb|CAN73718.1| hypothetical protein VITISV_010227 [Vitis vinifera]
Length = 304
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL +Y+ V I + + V R
Sbjct: 5 YRALNKVTVNNKYPIPLIADLFDQLGRARYFTKLDLRSSYYQVRIAEGDEAKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP +F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPAMFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|13559322|dbj|BAB40826.1| reverse transcriptase [Zea mays]
Length = 143
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IRPS + + + LY T + FGL +AP F L
Sbjct: 28 DQLRGASVFSKIDLRSGYHQLRIRPSDIPKTAFITKYGLYEFTVMSFGLTNAPAFFMNLM 87
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
N + ++ L V+V++DD+L+ +Q R + L+ + L + V W
Sbjct: 88 NSV--FMDYLDKFVVVFIDDILVYSQSEEEHADHLRMVLQRLREHQLYAKLSKCVFW 142
>gi|326668601|ref|XP_003198832.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1259
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 157/392 (40%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 493 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 552
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 553 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IQHQLYAKSSKCEFHQTC 608
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 609 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 668
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 669 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 728
Query: 297 SL-------GGVWSD--HQEMWHINL--KEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL +S + W+ ++ +E+ A+++ALE L+ K I +
Sbjct: 729 SLVNKKLHPCAFYSRKLNSAEWNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 788
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR--QKELPDW 402
+ YI +S K L +A + L YIPG N AD+LSR E ++
Sbjct: 789 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEF 841
Query: 403 HLLPEVTQHIFA---QWGVPEIDLFATANSAA 431
H P + + QW + + L A N+ +
Sbjct: 842 HDEPIIKDPLIVAPIQWDIEQEILQAAENNPS 873
>gi|326667605|ref|XP_003198633.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1388
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 151/390 (38%), Gaps = 82/390 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 467 YRGLNDITIKNRYPLPLMSSAFELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 526
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ R V VYLDD+L+ + + R
Sbjct: 527 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNRFVFVYLDDILIFSPSLKVHTQHVRQ 583
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V VQ+ +LG + + PT DS+ L
Sbjct: 584 VLQRLLENQLYVKAEKCVFH-VQSVSFLGFIISAGEIQADPCKVKAVAEWPTPDSRKA-L 641
Query: 243 EK----QSTIQRYLLTLTQIQW-------------WSV----ALHRSSPIFPQAP----- 276
++ + +R++ QI W V A + F AP
Sbjct: 642 QRFLGFANFYRRFIRNFGQIAAPLTALTSPKVPFKWEVDAQEAFDKLKSRFVSAPVLSIP 701
Query: 277 ----QVFVSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAVRS 321
Q V DAS+ G GA++ S G V + + + I +E+ AVR
Sbjct: 702 DPERQFIVEVDASDVGVGAVLSQRSRLDGKVHPCAFFSHRLNPSERNYDIGNRELLAVRL 761
Query: 322 ALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
AL L+ L+ +D++ + YI +S + L +A + L R N TL
Sbjct: 762 ALGEWRHWLEGAAQPFLVWTDHKN-LEYI------RSARRLSSRQARWALFFGRFNFTLS 814
Query: 379 ARYIPGKFNTWADSLSRQKELPDWHLLPEV 408
Y PG N D+LSR E P P+
Sbjct: 815 --YRPGSKNIKPDALSRLFEAPGEREPPDT 842
>gi|312381152|gb|EFR26964.1| hypothetical protein AND_06612 [Anopheles darlingi]
Length = 1053
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 69 LTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFH 122
L ++L S ++ GD + SL + + + VP DF L KIDL +AY
Sbjct: 219 LHMVLKSDGSWRPCGD--YRSLNAQTVPDRYPVPYLQDFTSMLHGAAVFSKIDLKKAYHQ 276
Query: 123 VPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD 182
VPI PS ++ L+ T + FGL +A Q F +L + + L V VY+DD
Sbjct: 277 VPISPSDVPKTAITTPFGLFEFTKMTFGLRNAAQTFQRLIDEVLQGLEY----VFVYIDD 332
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+++ ++ + + R LQ +N ++ L + Q+LG
Sbjct: 333 IIVASKTTEEHQIHLRTVFQRLQEHHLQINASKTELG-REELQFLG 377
>gi|326666824|ref|XP_003198387.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1239
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 140/354 (39%), Gaps = 77/354 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 493 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 552
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L VIVY+DD+L+ + RA + L + + + QTC
Sbjct: 553 V--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRLIQNQLYAKISKCEFH--QTC 608
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 609 ISFLGYIISPEGVAMDQQKVDSMTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 668
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 669 AMVKANNARLKWNPDAIRAFTQLKTRFSSAPILRHPDPEQPFIVEIDASNTGIGAILSQR 728
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALER---KLPVLQDKVVLIQSDNQ 342
SL + + + + +E+ A+++ALE L +D +I +D++
Sbjct: 729 SLVTKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKDPFTVI-TDHK 787
Query: 343 TVVSYIHKEGGTKSFKLLREVE-ALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI G R+ ALF +T YIPG N AD+LSR
Sbjct: 788 N-LEYIRSCKGLNP----RQARWALFFTRFDFQVT----YIPGSKNIKADALSR 832
>gi|147791175|emb|CAN61459.1| hypothetical protein VITISV_029798 [Vitis vinifera]
Length = 169
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K N++ +P D L + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTFRNNYPIPLVADCFDPLSKARVFTKLDLRSGYWQVRISEGDESKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N + +YL N V+VYLDD+++
Sbjct: 65 AYEFLVMPFGLTNAPATFCTLMNQVVRDYLENF---VVVYLDDIVI 107
>gi|116311093|emb|CAH68022.1| H0807C06-H0308C08.9 [Oryza sativa Indica Group]
Length = 1804
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 153/388 (39%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 951 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1010
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1011 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEGHQHHLRLV 1068
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG------------------IMWNPTLDSKSLP- 241
+ L+ + L + W + ++LG I W P +
Sbjct: 1069 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVIDWKPPKTVTQIRS 1127
Query: 242 -----------LEKQSTIQRYLLTLTQIQW---WSVALHR----------SSP--IFPQA 275
+E S I R + L + + WS + SSP I P
Sbjct: 1128 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFKTLKEKLVSSPVLILPDT 1187
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1188 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1247
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1248 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1299
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++ PE+ Q + A
Sbjct: 1300 ADALSRKSHCNTLNVRGIPPELNQQMEA 1327
>gi|356551385|ref|XP_003544056.1| PREDICTED: uncharacterized protein LOC100810263 [Glycine max]
Length = 1150
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + KIDL Y + IR + + + LY +PFGL +AP F +L
Sbjct: 684 DELHGACYFSKIDLKSGYNQIRIREGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLM 743
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
N I +G V+VY DD+L+ + L ++ + L+ + NLE+ +
Sbjct: 744 NHILREF--IGKFVVVYFDDILIYSTSLDLHIDHLKSVLTVLREEQLYANLEKCIF 797
>gi|88595485|gb|ABD43049.1| reverse transcriptase [Orobanche cernua var. cernua]
Length = 143
Score = 51.6 bits (122), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S ++ R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKMAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKSEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDILRTERLYAKFSKCEFW 142
>gi|353231103|emb|CCD77521.1| hypothetical protein Smp_166950 [Schistosoma mansoni]
Length = 1074
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 15/162 (9%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ + KIDL +AY ++P+ ++ L+ +PFGL +A Q F + +
Sbjct: 543 LQGMNIFTKIDLVRAYHNIPVADEDIPKTAITTPFGLFEFVRMPFGLRNAAQTFQR---F 599
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL-RWSVNLERS-VLWPVQ 222
I N LR++ Y+DDLL+ + D L+S + L+ L +N+ +S ++ VQ
Sbjct: 600 IDNLLRDMPF-AQGYIDDLLIASPD---LQSHEQHVKTVLKRLDEHGINIHQSKCVFGVQ 655
Query: 223 TCQYLGIMWNPTLDSKSLPLEKQ-STIQRYLL--TLTQIQWW 261
T ++LG +P P++K+ TI++Y + +LTQ++ +
Sbjct: 656 TLEFLGHTISP---EGIKPIKKEVDTIKQYPIPSSLTQLRSF 694
>gi|301620024|ref|XP_002939392.1| PREDICTED: uncharacterized protein K02A2.6-like [Xenopus (Silurana)
tropicalis]
Length = 1256
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L +G K+DL+QAY +P+ + +++ + T L FG+ AP VF KL +
Sbjct: 499 LAKGKLFAKLDLAQAYQQLPVDDAAADAQTIITHKGAFKATRLQFGVCIAPGVFQKLMDD 558
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L V+ Y DD+L+G L + RA + + E+ V V +
Sbjct: 559 LLSSLPG----VVPYFDDVLIGADSVESLTERVRAVLKRFSDAGLKLKKEKCVFG-VPSV 613
Query: 225 QYLG 228
++LG
Sbjct: 614 EFLG 617
>gi|301609602|ref|XP_002934358.1| PREDICTED: hypothetical protein LOC100487718 [Xenopus (Silurana)
tropicalis]
Length = 913
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 46/322 (14%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+ K+D+ A+ +P+ L + Y CLP G + + F + +I +
Sbjct: 594 LMAKVDVESAFRLLPVHQESLHLLGCYFEGGYYVDCCLPMGCSISCAYFEAFSTFIEWVV 653
Query: 170 RNLGM--RVIVYLDDLL-LGNQDS----VLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
R VI YLDD L +G S VLL+ R A + + V L
Sbjct: 654 RKRAGANSVIHYLDDFLCVGPGHSMLCAVLLQMFQRVADS------FGVPLAPDKTEGPT 707
Query: 223 TC-QYLGIMWNPTLDSKSLPLEKQSTIQRYL--------LTLTQIQWWSVALHRSSPIFP 273
TC ++LGI + LP +K ++ + +TL Q+Q L+ + I P
Sbjct: 708 TCLRFLGIEIDTIRQECRLPQDKIQQLKEEVGYAREAKKITLRQLQSLLGKLNFACRIIP 767
Query: 274 QAP--------------QVFVSTDASNS-GWGAIVDNH----SLGGVWSDHQEMWHINLK 314
++ + TDA+ S G+GA S W +++ ++ L
Sbjct: 768 MRSLMADYWQSQPRPNRELHLFTDAAGSAGFGAYFAGKWCAASWPNTWVENKLTGNLTLL 827
Query: 315 EMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHK--EGGTKSFKLLREVEALFDLAVR 372
E F + A+E L+++ V+ +DN +VV I G LL+ L ++
Sbjct: 828 EFFPIIVAIELWGTQLKNQSVVFFTDNMSVVMAITNLTSGSRPVLNLLKH---LVLRCLQ 884
Query: 373 HNITLMARYIPGKFNTWADSLS 394
N+ A+++PG N ADSLS
Sbjct: 885 LNVRFEAKHVPGHTNEIADSLS 906
>gi|310753567|gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
KIDL Y + IR + + + LY +PFGL +AP F +L N + L
Sbjct: 696 KIDLKSGYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLREF--L 753
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWS---VNLERSVL 218
G V+VY DD+L+ +++ L A LQ LR+ NLE+ V
Sbjct: 754 GKFVVVYFDDILIYSKN---LDDHCIHLKAVLQVLRYENLYANLEKCVF 799
>gi|390356762|ref|XP_798464.2| PREDICTED: uncharacterized protein LOC593916 [Strongylocentrotus
purpuratus]
Length = 2282
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 139/355 (39%), Gaps = 82/355 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L RG K+D + ++ +P+ + + + +C LPF + SAP++F + +
Sbjct: 1487 LGRGTIFTKLDANSGFWQLPLDEESKLLTTFITPFGRFCFNRLPFWITSAPEIFQRTMSG 1546
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I L VI ++DD+L+ + ++ RA + + + L + +T
Sbjct: 1547 ILEGLEG----VICHMDDVLIHGATTAEHDTRVRAVLQRF--VEAGLTLNSKCEFSRETV 1600
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYLL--TLTQIQWWSVALHRSSPIFPQ-------- 274
++LG + + T + LEK I+ + T+T++Q + +++ P
Sbjct: 1601 KFLGHIVDAT--GVKIDLEKTRAIREFPAPRTITELQRFMGMVNQVGKFLPNLAVMNEPL 1658
Query: 275 -------------APQV--------------------------FVSTDASNSGWGAIV-- 293
PQ ++ DAS++G GAI+
Sbjct: 1659 RALLRKDNGWCWDEPQQRAFEHIKKMLTDVTEVLAHYNPSLPPTIAADASSTGVGAILLQ 1718
Query: 294 ---DNHSLGGVW-----SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVV 345
D H + ++ ++ + + KE A A E+ + I++D++++V
Sbjct: 1719 TQNDGHRRPVCYASRSLTETEQRYAVIEKEALAATWACEKFSDYVLGMSFKIETDHKSLV 1778
Query: 346 SYIHKEGGTKSFKLLREVEALFDLAVRHNITLM-----ARYIPGKFNTWADSLSR 395
+ ++ +E+ L +R + LM Y+PGK AD+LSR
Sbjct: 1779 TLLNT----------KELSKLPPRVLRFRLRLMRYDATTEYVPGKQQATADALSR 1823
>gi|147766781|emb|CAN67535.1| hypothetical protein VITISV_032523 [Vitis vinifera]
Length = 301
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYLIPLIDDLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP +F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLMMPFGLTNAPAMFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|18767374|gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
gi|21327374|gb|AAM48279.1|AC122148_32 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
Japonica Group]
gi|31431495|gb|AAP53268.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1230
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
L + +DG L + L K + N + +P D LQ KIDL Y +
Sbjct: 537 LFVKKKDGSLRLCT-DYRELNKVTIKNKYPLPRIDDLFDQLQGARVFSKIDLQSGYHQLK 595
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
I+PS + R Y +PFGL +AP F L N I + L V+V++DD+L
Sbjct: 596 IKPSDIPKTAFRARYGHYEYLVMPFGLTNAPAAFMDLMNRI--FKPYLDQFVVVFIDDIL 653
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
+ ++ + R + TL+ + L++ W
Sbjct: 654 IYSKTKEDHANHLRIVLQTLRDHKLFAKLKKCDFW 688
>gi|356573917|ref|XP_003555102.1| PREDICTED: uncharacterized protein LOC100796026 [Glycine max]
Length = 1109
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + KIDL Y + IR + + + LY +PFGL +AP F +L
Sbjct: 684 DELHGACYFSKIDLKSGYNQIRIREGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLM 743
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
N I +G V+VY DD+L+ + L ++ + L+ + NLE+ +
Sbjct: 744 NHILREF--IGKFVVVYFDDILIYSTSLDLHIDHLKSVLTVLREEQLYANLEKCIF 797
>gi|224365645|ref|YP_002608372.1| orf333 [Vitis vinifera]
gi|209954169|emb|CAQ77616.1| orf333 [Vitis vinifera]
gi|239764769|gb|ACS15238.1| ORF333 [Vitis vinifera]
Length = 221
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K N++ +P D L + K+DL Y+ V I + + V R
Sbjct: 83 YRALNKVTFRNNYPIPLVADCFDPLSKARVFTKLDLRSGYWQVRISEGDESKTTCVTRYG 142
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N + +YL N V+VYLDD+++
Sbjct: 143 AYEFLVMPFGLTNAPATFCTLMNQVVRDYLENF---VVVYLDDIVI 185
>gi|156378576|ref|XP_001631218.1| predicted protein [Nematostella vectensis]
gi|156218254|gb|EDO39155.1| predicted protein [Nematostella vectensis]
Length = 198
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 228 GIMWNP------------TLDSKSLPLEKQSTIQRYLLTLTQIQWW-SVALHRSSPIFPQ 274
G+M+ P L+SK + T+ R + +++WW + L + I
Sbjct: 44 GVMYGPLYYRSIESDKSKALNSKRGNFDAYMTLSRK--STAELEWWENNVLDNKNVISHG 101
Query: 275 APQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINL 313
AP ++TDASN GWGA+ +N S GG WS ++ HIN
Sbjct: 102 APSHTLTTDASNLGWGAVFENDSTGGTWSVKEQKHHINF 140
>gi|88595675|gb|ABD43144.1| reverse transcriptase [Orobanche ramosa]
Length = 143
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYTLPRIDDLFDQLQGASVFSKIDLRSGYYQLRVKESDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N I ++ +L V+V++DD+L+ ++
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKI--FIEHLDTCVVVFIDDILIYSKSEEEHARHLHLV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
++ L++ R + V W
Sbjct: 124 LSILRAHRLYAKFSKCVFW 142
>gi|88595563|gb|ABD43088.1| reverse transcriptase [Orobanche owerinii]
Length = 143
Score = 51.6 bits (122), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + +R S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGSTVFSKIDLRSGYYQLRVRDSDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++D
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKCVVVFIDDILIYSKD 112
>gi|32480328|emb|CAE02460.1| OSJNBa0042D13.13 [Oryza sativa Japonica Group]
Length = 784
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 136/335 (40%), Gaps = 42/335 (12%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 5 YRALNEVTIKNKYPLPRIDDLFDQLKDATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 65 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLV 122
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQW 260
+ L+ + L + W + ++LG + + +K + ++ + T+T +
Sbjct: 123 LGKLREHQLYAKLSKCEFW-LSEVKFLGHV----ISTKGVAVDPE--------TVTAVTD 169
Query: 261 W----SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEM 316
W +V RS + F+ + + + VWS E LKE
Sbjct: 170 WKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEK 229
Query: 317 FAVRSALERKLP-VLQDKVVLIQSDNQTVVSYIHKEGGTKSF--KLLREVEALF---DL- 369
L LP +D +V + Q + + +EG ++ + LR E + DL
Sbjct: 230 LVSSPVL--ILPDTRKDFMVCCDASRQGLGCVLMQEGHVVAYASRQLRPHEGNYPTHDLE 287
Query: 370 --AVRHNITLMA------RYIPGKFNTWADSLSRQ 396
AVR + L+ Y PGK N AD+LSR+
Sbjct: 288 LAAVRRWLELIKDYDVGIHYHPGKANVVADALSRK 322
>gi|291223453|ref|XP_002731724.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 945
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN---WIAN 167
+ K D++ A+ +P+ PS + V ++ Y L FG S+P++F L+ WIA
Sbjct: 561 MCKFDITDAFKIIPLHPSIWKLHGVKWQGNYYFFVRLVFGSRSSPKIFDMLSTAICWIAQ 620
Query: 168 YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER------SVLWPV 221
+ G+R I++L D D + + A +A+ ++ + NL R L P
Sbjct: 621 F--KYGIRYILHLLD------DFLTIDVHAESAMRSMAVMTMIFNLLRIPLAKHKTLGPA 672
Query: 222 QTCQYLGIMWNPTLDSKSLPLEKQSTI 248
Q +YLGI+ + + LP +K++ I
Sbjct: 673 QELEYLGILLSSKDMTAFLPADKKARI 699
>gi|4235644|gb|AAD13304.1| polyprotein [Solanum lycopersicum]
Length = 1542
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + VP D L + + K+DL Y+ V I + + V R
Sbjct: 668 YRALNKATIKNKYSVPLVQDLMDRLSKACWFTKLDLRAGYWQVRIAEGDEPKTTCVTRYG 727
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N + +YL + V+VYLDD+++
Sbjct: 728 SYEFLVMPFGLTNAPATFCNLMNNVLFDYLDDF---VVVYLDDIVI 770
>gi|341883393|gb|EGT39328.1| hypothetical protein CAEBREN_30696 [Caenorhabditis brenneri]
Length = 710
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G F +IDL++AY + + + LS+ +Y LPFG+ SAP +F ++ + + N
Sbjct: 567 GKFFTQIDLAEAYLQIELDDQSKNLLSINTHKGIYQFQRLPFGVKSAPGIFQQVMDQLVN 626
Query: 168 YLRNLGMRVIVYLDDLLL 185
+ V YLDD+++
Sbjct: 627 GIEG----VSAYLDDIII 640
>gi|284434610|gb|ADB85337.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1053
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IRP + R
Sbjct: 180 YRSLNEVTIKNKYPLPRIDDLFDQLKGASVFSKIDLRSGYHQLKIRPEDIPKTAFTTRYG 239
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F + N + ++ L V+V++DD+L+ +++ R
Sbjct: 240 LYEFTVMSFGLTNAPAYFMNMMNKV--FMEFLDKFVVVFIDDILIYSKNEDEHEDHLRII 297
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W Q +LG
Sbjct: 298 LGKLRENQLYAKFNKCEFWLSQVA-FLG 324
>gi|427797353|gb|JAA64128.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 913
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ +F ++L Y+ VP+ PS + ++V D LY +PFGL +AP F ++
Sbjct: 263 DCLQGAEFFSSLELRSGYWQVPMAPSDRPKTALVTPDGLYEFNVMPFGLCNAPATFERMM 322
Query: 163 NWIANYLRNLGMR---VIVYLDDLLLGNQD 189
+ + LG++ + YLDD+++ + D
Sbjct: 323 DSVL-----LGLKWKTCLFYLDDVVVFSPD 347
>gi|310753563|gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 140/348 (40%), Gaps = 63/348 (18%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL Q Y V IR + + + LY +PFGL++AP F +L
Sbjct: 694 DELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRL- 752
Query: 163 NWIANYLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
+ LR LG +VY DD+L+ ++ L+ + LE+ V
Sbjct: 753 --MTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKILREQKLYGKLEKCTFM-V 809
Query: 222 QTCQYLGIMWNP---TLDSKSLPLEKQ-----------------STIQRYLLTLT----- 256
+ +LG + + ++D +++ + S +R++ +
Sbjct: 810 EEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEVRSFHGLASFYRRFIKNFSTVVAP 869
Query: 257 --------QIQWWSVA---------LHRSSPI--FPQAPQVF-VSTDASNSGWGAI-VDN 295
+ QW A L ++PI P Q+F V DAS G GA+ + +
Sbjct: 870 ITECMRKGEFQWTEQAQQSFEKIKQLMCNTPILKLPDFDQLFEVECDASGVGIGAVLIQS 929
Query: 296 HSLGGVWSDHQEMWHINL----KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKE 351
+S+ + KE +A+ AL L+ K ++ SD++ + YI+ +
Sbjct: 930 QKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVLHSDHE-ALKYINGQ 988
Query: 352 GGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKEL 399
+F+ + VE L + T ++Y GK N AD+LSR+ L
Sbjct: 989 HKL-NFRHAKWVEFL------QSFTFSSKYKEGKKNVVADALSRRHSL 1029
>gi|156058736|ref|XP_001595291.1| hypothetical protein SS1G_03380 [Sclerotinia sclerotiorum 1980]
gi|154701167|gb|EDO00906.1| hypothetical protein SS1G_03380 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1004
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 123/308 (39%), Gaps = 48/308 (15%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
K+D+ QA+ + + P + + R Y M LPFGL + P + + N +
Sbjct: 156 FTKLDIRQAFHRIRMDPDSEELTTFRTRYGAYKMKVLPFGLTNGPATYQRYMNEV--LFD 213
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
L + YLDD+L+ + D + Q + + L++ ++++ + + +YLG +
Sbjct: 214 YLDIFCTAYLDDILIYSNDPLEHEYQVKLVLERLRNAGLQADIKKCE-FNITKTKYLGFI 272
Query: 231 WNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWG 290
+ ++ + ++ + L + +Q + L + + TDAS+ G
Sbjct: 273 ----ISTEGIEVDPEKVDVAALTSAPLLQHYDPEL-----------ECMLETDASD-GVV 316
Query: 291 AIVDNHSLGGVW----------SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSD 340
A V + G W + + + ++ KEM A+ + + L +
Sbjct: 317 ACVLSQKHGEDWLPVAYYSKTMAPAELNYEVHDKEMLAIIKGFKNW------RAELTSTP 370
Query: 341 NQTVVSYIHK------EGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLS 394
+Q V HK T + + R E L D + Y PGK N AD+L+
Sbjct: 371 HQIRVFTDHKALEYFMTSKTLNARQARWAELLADY------NFIIAYRPGKDNPLADALT 424
Query: 395 RQ-KELPD 401
R+ EL D
Sbjct: 425 RRDNELDD 432
>gi|77554807|gb|ABA97603.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1753
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 153/388 (39%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 872 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 931
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 932 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 989
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 990 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRS 1048
Query: 249 --------QRYLLTLTQIQWWSVALHRSSPIF---PQAPQVF------------------ 279
+R++ ++I L + F PQ + F
Sbjct: 1049 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFKTLKEKLVASPVLILPDT 1108
Query: 280 -----VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1109 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1168
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L H++ + Y PGK N
Sbjct: 1169 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDHDVGI--HYHPGKANVV 1220
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++ PE++Q + A
Sbjct: 1221 ADALSRKSHCNTLNVRGIPPELSQQMAA 1248
>gi|169116568|gb|ACA42587.1| polymerase [Duck hepatitis B virus]
Length = 841
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 20/228 (8%)
Query: 4 PVFRQILKAISLKRAIGLLEKREIWDVSTLISWISDHPPNQDSFFEVARHTAILLLLCSG 63
PV+R S K + LE+ +W + SW PN R T L L+
Sbjct: 405 PVYRARTSGASDKNSP--LEEENVWYLRGNTSW-----PN--------RITGKLFLVDKN 449
Query: 64 RRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHV 123
R + L+ F G A + ++ N + L G + +DLSQA++H+
Sbjct: 450 SRNTEEARLVVDFSQFSK-GKNA-MRFPRYWSPNLSTLRRILPVGMPRISLDLSQAFYHL 507
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-RNLGMRVIVYLDD 182
P+ P+ L+V +Y P G+ +P + T + + + R + Y+DD
Sbjct: 508 PLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISRRFNVWTFTYMDD 567
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV--LWPVQTCQYLG 228
LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 568 FLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPSPVNEIRFLG 615
>gi|449501261|ref|XP_004161321.1| PREDICTED: uncharacterized protein LOC101223713 [Cucumis sativus]
Length = 645
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + KIDL Y + IRP + + ++ L+ +PFGL++AP F +L
Sbjct: 549 DQLGKASIFSKIDLKSGYHQIRIRPGDEWKTTFKTKEGLFEWMVMPFGLSNAPNTFMRLM 608
Query: 163 NWIANYLRNLGMRVIVYLDDLLL 185
N I + L ++VY DD+L+
Sbjct: 609 NQILHPF--LNKFIVVYFDDILV 629
>gi|308512333|ref|XP_003118349.1| hypothetical protein CRE_00852 [Caenorhabditis remanei]
gi|308238995|gb|EFO82947.1| hypothetical protein CRE_00852 [Caenorhabditis remanei]
Length = 1564
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 132/346 (38%), Gaps = 77/346 (22%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+DL Y+ +P+ + + L+ LPFGL ++P VF + L LG
Sbjct: 395 LDLLAGYWQIPLEERSKEITAFAIGSELFEYNVLPFGLVTSPAVFQATMEAVVGDL--LG 452
Query: 174 MRVIVYLDDLLLGNQ---------DSVLLRSQA----------------------RAAVA 202
VY+DDLL+ ++ +L+R +A R
Sbjct: 453 KNAFVYVDDLLIASETMEKHIQDLKEILIRLEASGMKLRASKCHIAQREVEYLGHRITPE 512
Query: 203 TLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQW-W 261
+++ VN ++ P Q + K + Q + LT ++ W W
Sbjct: 513 GVKTEETKVNKMKNFTRPENAEQMRSFLGLTGYYRKFMLNYAQVASELTPLTSVKVAWVW 572
Query: 262 SVALHR----------SSPIFPQAPQV----------FVSTDASNSGWGAIVDNHSLGGV 301
+ S+P+ Q P + + DAS G GA++ G+
Sbjct: 573 QAEQEKAFQELIQLICSAPVLMQ-PNIEQALDGSRPFMIYCDASKKGVGAVLAQEGDDGL 631
Query: 302 ----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKE 351
S ++ +HI E A+ SAL + + V++ +D++ ++S + +
Sbjct: 632 QHPIAFSSKALSPAEKRYHITDLEALAMMSALRKFKTITYGTSVVVFTDHKPLISLL--K 689
Query: 352 GGTKSFKLLR-EVEAL-FDLAVRHNITLMARYIPGKFNTWADSLSR 395
G S +L+R +E + FD+ + YI G+ N AD+LSR
Sbjct: 690 GSPLSDRLMRWSIEIMQFDVKI--------VYIAGQANVVADALSR 727
>gi|4388720|gb|AAD19758.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 587
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL Y + IRP + +D LY +PFG+++AP F +L
Sbjct: 422 DELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSKDGLYEWQVMPFGMSNAPSTFMRLM 481
Query: 163 NWIANYLRNL-GMRVIVYLDDLLL 185
N I LR G V+VY DD+L+
Sbjct: 482 NQI---LRPFTGSFVVVYFDDILI 502
>gi|147769171|emb|CAN60771.1| hypothetical protein VITISV_027170 [Vitis vinifera]
Length = 299
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|147863188|emb|CAN80487.1| hypothetical protein VITISV_043198 [Vitis vinifera]
Length = 1499
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D +V KIDL Y + IR + S +D LY
Sbjct: 614 AINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQICIRSGDEWKTSFKTKDGLY 673
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+PFGL +AP F + + +G V+VY DD+L+ ++ + +
Sbjct: 674 EWLVMPFGLTNAPSTFMRSMTQVLKPF--IGWFVVVYFDDILIYSRSCEDHEEHLKQVMR 731
Query: 203 TLQSLRWSVNLERSVL 218
TL++ ++ +NL++
Sbjct: 732 TLRAKKFYINLKKCTF 747
>gi|147780192|emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
Length = 1392
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D +V KIDL Y + IRP + S +D LY
Sbjct: 640 AINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLY 699
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
+PFGL +AP F ++ + +G V+VY DD+L+ ++ + V
Sbjct: 700 EWLVMPFGLTNAPSTFMRIMTQVLKPF--IGRFVVVYFDDILIYSRSCEDHEEHLKQGVE 757
Query: 203 TLQSLRWSVNLERSVLWPVQT 223
T ++ V WPV T
Sbjct: 758 TDPE-----KIKAIVDWPVPT 773
>gi|357630417|gb|EHJ78554.1| hypothetical protein KGM_22403 [Danaus plexippus]
Length = 137
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 37 ISDHPPNQDSFFEVARHTAILLLLCSGRRVHDLTLL 72
+S H PN++S ++V+RH A LLLL S RR+HDLTLL
Sbjct: 1 MSSHNPNENSLYDVSRHAATLLLLASCRRIHDLTLL 36
>gi|308508519|ref|XP_003116443.1| hypothetical protein CRE_09308 [Caenorhabditis remanei]
gi|308251387|gb|EFO95339.1| hypothetical protein CRE_09308 [Caenorhabditis remanei]
Length = 2044
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 84/358 (23%), Positives = 143/358 (39%), Gaps = 83/358 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK---- 160
L R + +DL Y+ +P+ + + + Y +PFGLA++P +F +
Sbjct: 924 LGRKKWFTTLDLMAGYWQIPMEEESKEKTAFTVLNEQYQFEVMPFGLATSPAIFQEAMEQ 983
Query: 161 -LTNWIANYLRNLGMRVIVYLDDLLLGNQ-------DSVLLRSQARAAVATLQSLRWSVN 212
L WI G V VY+DD+L+ ++ D + + R L++ + +
Sbjct: 984 VLGEWI-------GKSVFVYIDDILIASESMEEHAADLAKVLRRIRDCGLKLKAQKCKI- 1035
Query: 213 LERSVLWPVQTCQYLGIMWNPTLDSK--SLPLEKQ---------------------STIQ 249
++SV + LG+ + K + P+ K S+I
Sbjct: 1036 AQKSVEYLGHVIDELGVRTDGKKVEKVENFPIPKDRVELHSFLGLCTYYRNFVMNFSSIA 1095
Query: 250 RYLLTLT--QIQW-WSV-------ALHR---SSPIFPQ----APQVF-----VSTDASNS 287
L LT ++ W W+ L R S+P+ Q A + F + TDAS
Sbjct: 1096 APLTPLTSPKVAWRWTSEQQEAFEELKRRMTSAPVLAQPDIEAARSFERPFCIFTDASGY 1155
Query: 288 GWGAIVDNHSLGG----------VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLI 337
G GA++ L G + ++ +H++ KE AV A R + +
Sbjct: 1156 GIGAVLAQVGLDGKVHPIAFASKALTPAEKNYHVSDKEALAVLFATRRFKHFIFGCPTTV 1215
Query: 338 QSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+D+Q + S +G + +LLR + D A+ NI Y+ GK N AD+LSR
Sbjct: 1216 FTDHQPLTSLF--KGKKLADRLLRWSMEMQDFAL--NIV----YLKGKANPVADALSR 1265
>gi|341883865|gb|EGT39800.1| hypothetical protein CAEBREN_00607 [Caenorhabditis brenneri]
Length = 1108
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 18/200 (9%)
Query: 71 LLLSSRDGF----QDLGDRAFLSLKKFHLINHFR-VPDFLQRGDFLVKIDLSQAYFHVPI 125
+L+ +DG D + +++K+ +LI + D G F +DL Q +F +P+
Sbjct: 600 VLVKKKDGTFRFTTDFRELNAVTVKQIYLIPLISDIVDLASHGKFFTNLDLIQGFFQIPL 659
Query: 126 RPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
R + SV + + +P GL AP F + R R+ YLDDLL+
Sbjct: 660 RKQDRPLTSVSTPNGTFQYKRMPMGLCGAPHTFQSAVQQLQKMTR---ARLFCYLDDLLI 716
Query: 186 GNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----PTLDS--- 237
+ + + ++ + + +++ +P + +LG++ PT D
Sbjct: 717 VSDSMDQHLKDIEEVLKNIITIGFKIKIQK-CKFPQREVTFLGLLVGREGVKPTPDKVRS 775
Query: 238 -KSLPLEKQSTIQRYLLTLT 256
K P K T R + +T
Sbjct: 776 IKDFPPPKSVTGVRAFIGMT 795
>gi|147769722|emb|CAN69702.1| hypothetical protein VITISV_020318 [Vitis vinifera]
Length = 1454
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 609 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 668
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y + FGL +AP F L N I + YL V+VYLDD+++
Sbjct: 669 SYEFLVMSFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 711
>gi|427798439|gb|JAA64671.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 926
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ +F +DL Y+ VP+ + + + V D LY T +PFGL +AP F ++
Sbjct: 155 DCLQGAEFFSSLDLRSGYWQVPMAEADRSKTAFVTPDGLYEFTVMPFGLCNAPATFERMM 214
Query: 163 NWIANYLRNLG-MRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
+ LR L + YLDD+++ + D ++ + L + +NL++
Sbjct: 215 DAT---LRGLKWNTCLCYLDDVVVFSTDFASHLTRLEQVLTCLSTAGLQLNLKK 265
>gi|88595557|gb|ABD43085.1| reverse transcriptase [Orobanche owerinii]
Length = 143
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIRNKYPLPRIDDLFDQLQGASIFSKIDLRSGYYQLRVKDSDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + + L VIV++DD+L+ + R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FTEYLDKCVIVFIDDILIYSTSEEEHARHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + V W
Sbjct: 124 LDILRTERLFAKFSKCVFW 142
>gi|147783452|emb|CAN75210.1| hypothetical protein VITISV_005867 [Vitis vinifera]
Length = 1137
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 138/362 (38%), Gaps = 62/362 (17%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 600 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 659
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y + FGL +AP F L N I + YL V+VYLDD+++ + R
Sbjct: 660 SYEFLVMSFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVIYSNTLKEHEEHLRK 716
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLG-------IMWNPTLDSKSLPLEKQSTIQRY- 251
L+ + V E+ + + +LG +M + + L + + + Y
Sbjct: 717 VFKILRQNKLYVKKEKCS-FAKEEVSFLGHRIRDGKLMMDDSQGESHLGVGSTNQVNYYR 775
Query: 252 ---------------LLTLTQIQWWSVALHRS----------SPI--FPQAPQVF-VSTD 283
LL + W ++ P+ P +VF V TD
Sbjct: 776 RFIKGYSGRTAPLTDLLKKNKAWEWDERCQQAFEDLKKAVTEEPVLALPDHTKVFEVHTD 835
Query: 284 ASNSGWGAIV--DNHSL---GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQ 338
A + G ++ + H + +D + + + KEM A+ L L +++
Sbjct: 836 ALDFAIGGVLMQERHPIVFESRKLNDVERRYTVQEKEMTAIVHCLRTWRHYLLGSHFIVK 895
Query: 339 SDNQTVVSYIHKEGGTKSFKLLREVEALF-DLAVRHNITLMARYIPGKFNTWADSLSRQK 397
+DN SY + K L +A + D + TL Y PG N AD+LSR+
Sbjct: 896 TDN-VATSYFQTQ------KKLSPKQARWQDFLAEFDYTL--EYKPGSANHVADALSRKV 946
Query: 398 EL 399
EL
Sbjct: 947 EL 948
>gi|443703707|gb|ELU01142.1| hypothetical protein CAPTEDRAFT_219704 [Capitella teleta]
Length = 525
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQW 260
+A L++L + +NLE+S L P + +LG LEK + +L +++W
Sbjct: 1 MALLRNLGFLINLEKSDLHPKKQFTFLG-------------LEKCIFSEEAIL---ELRW 44
Query: 261 WSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
WS L + P P V +S DAS SGWGA SL G W + ++ HIN
Sbjct: 45 WSTLLIVIKRLSPALPSVAMSADASGSGWGATWGTRSLAGTW-EARDWRHIN 95
>gi|147843566|emb|CAN82013.1| hypothetical protein VITISV_005479 [Vitis vinifera]
Length = 127
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + +K+DL Y+ V I + S V R
Sbjct: 5 YRALNKVMVKNKYPIPLIADLFDQLDRARYFIKLDLRSGYYQVRIAERDEPKTSCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP +F L N I + YL ++VY DD+++
Sbjct: 65 SYEFLVMPFGLTNAPTMFCTLMNKIFHPYLDKF---MVVYADDIVI 107
>gi|326673825|ref|XP_003200006.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1421
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 150/384 (39%), Gaps = 84/384 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 452 YRGLNDITIKNRYPLPLMSSAFELLQGAQVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 511
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + + R
Sbjct: 512 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNQFVFVYLDDILIFSPSMQVHTQHVRQ 568
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V ++ +LG + + PT DS+ L
Sbjct: 569 VLQRLLENQLFVKAEKCVFH-AKSVSFLGFVISAGEIKADPSKVRAVAEWPTPDSRKA-L 626
Query: 243 EK----QSTIQRYLLTLTQIQ--------------WWSVALHR---------SSPIF--- 272
++ + +R++ +QI W S A S+P+
Sbjct: 627 QRFLGFANFYRRFIRNFSQIAAPLTVLTSPKVPFIWGSKAQEAFDNLKSRFISAPVLSIP 686
Query: 273 -PQAPQVFVSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVR 320
P+ Q V DAS+ G GA++ S S + + I +E+ AVR
Sbjct: 687 DPKR-QFIVEVDASDVGVGAVLSQRSQRDEKVHPCAFFSHRLSPTERNYDIGNRELLAVR 745
Query: 321 SALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITL 377
AL L+ V ++ +D++ + YI + K L +A + L R N TL
Sbjct: 746 LALGEWRHWLEGAVQPFVVWTDHKN-LEYI------STAKRLSSRQARWSLYFSRFNFTL 798
Query: 378 MARYIPGKFNTWADSLSRQKELPD 401
+ Y PG NT DSLSR P+
Sbjct: 799 L--YRPGSKNTKPDSLSRMFSAPE 820
>gi|189242086|ref|XP_001806924.1| PREDICTED: similar to retrotransposon protein, putative,
unclassified, partial [Tribolium castaneum]
Length = 1259
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + H+ +P D L+ + +DLS Y VP+ + + + D
Sbjct: 702 YRALNKKTVKQHYPLPLIDDQLDRLRGQIYFTSVDLSMGYHQVPMSRDARGKTAFITPDG 761
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+YC + FGLA+AP F +L N + LR + YLDD+++
Sbjct: 762 VYCFKRMSFGLANAPSQFQRLINIVLGNLRY--DTAMAYLDDIII 804
>gi|301607526|ref|XP_002933359.1| PREDICTED: uncharacterized protein K02A2.6-like [Xenopus (Silurana)
tropicalis]
Length = 888
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L +G K+DL+QAY +P+ + +++ + T L FG+ AP VF KL +
Sbjct: 80 LAKGKLFAKLDLAQAYQQLPVDDAAADAQTIITHKGAFKATRLQFGVCIAPGVFQKLMDD 139
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L V+ Y DD+L+G L + RA + + E+ V V +
Sbjct: 140 LLSSLPG----VVPYFDDVLIGADSVESLTERVRAVLKQFSDAGLKLKKEKCVFG-VPSV 194
Query: 225 QYLG 228
+LG
Sbjct: 195 DFLG 198
>gi|147799473|emb|CAN77324.1| hypothetical protein VITISV_012650 [Vitis vinifera]
Length = 829
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 89 SLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
K + N + +P D L R + K+DL Y+ V I + + V R Y
Sbjct: 235 EFKDVTVKNKYPIPLIADLFDQLGRVRYFTKLDLRSGYYQVKITEGDEPKTTCVTRYDSY 294
Query: 143 CMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
+PFGL +AP +F L N I + YL V+VYLDD+++
Sbjct: 295 EFLVMPFGLTNAPAIFCTLMNKIFHPYLDKF---VVVYLDDIVI 335
>gi|2343269|gb|AAC59310.1| pol polyprotein [Walleye epidermal hyperplasia virus 1]
Length = 1200
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTNWIANYLRNL 172
IDLS A+F VPI P Q + + Y T LP G +P +F++ L + ++ +L
Sbjct: 264 IDLSNAFFSVPIHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLSKIKDSL 323
Query: 173 GMRVIVYLDDLLLGNQD 189
+ +Y+DD+L+ ++D
Sbjct: 324 TSEICIYMDDVLIASKD 340
>gi|58532064|emb|CAD40396.3| OSJNBa0004L19.15 [Oryza sativa Japonica Group]
Length = 1821
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 940 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 999
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1000 LYEFTVMSFGLTNAPAFFMNLMNQV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 1057
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + LW + ++LG
Sbjct: 1058 LGKLREHQLYAKLSKCELW-LSEVKFLG 1084
>gi|88595509|gb|ABD43061.1| reverse transcriptase [Orobanche cernua var. cernua]
Length = 142
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ KIDL Y + I S + R
Sbjct: 5 YRELNKMTIKNKYPLPRIDDLFDQMRGATVFSKIDLRSGYHQLRINESDIPRSAFRTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + + +L V+V++DD+L+ ++D R
Sbjct: 65 HYEFVVMPFGLTNAPAVFMQLMNRV--LIEHLDKFVVVFIDDILVYSKDEEEHEEHLRTV 122
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+S + L + V W
Sbjct: 123 LNLLRSEQLYAKLSKCVFW 141
>gi|326677849|ref|XP_003200929.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1198
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 153/392 (39%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 279 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 338
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 339 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IKNQLYAKSSKCEFHQTC 394
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 395 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 454
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V ASN+G GAI+
Sbjct: 455 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIYASNTGIGAILSQR 514
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 515 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 574
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YIPG N AD+LSR E+
Sbjct: 575 LEYI------RSCKRLNPRQARWALFFT-RFDFQVTYIPGSKNIKADALSRLSDDETSEI 627
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ + QW + + L A N+ +
Sbjct: 628 PDEPIIKDPLIVAPIQWDIEQEILQAAENNPS 659
>gi|108706119|gb|ABF93914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1776
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LL+ +DG++ + + +L + + N + +P D L+ KIDL Y +
Sbjct: 891 LLVKKKDGYERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLK 949
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY T + FGL +AP F L N I ++ L V+V++DD+L
Sbjct: 950 IRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKI--FMEYLDQFVVVFIDDIL 1007
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
+ +++ R + L+ + R W
Sbjct: 1008 IYSKNEEEHAEHLRLIMEKLRDHQLFAKFSRCEFW 1042
>gi|62082798|gb|AAX62227.1| reverse transcriptase [Sciadopitys verticillata]
gi|62082800|gb|AAX62228.1| reverse transcriptase [Sciadopitys verticillata]
Length = 116
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L+ F KIDL Y VPI P+ + ++
Sbjct: 10 YRALNKITVKNRYPIPRIDDLLDQLRGAKFFTKIDLKSGYHQVPIEPADVWETAFKSKEG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
L+ +PFGL +AP F ++ N + + V+VYLDDLL+
Sbjct: 70 LFEWLVMPFGLTNAPATFMRMMNDVLWPFTD--SFVVVYLDDLLI 112
>gi|339257270|ref|XP_003370005.1| putative integrase core domain protein [Trichinella spiralis]
gi|316965467|gb|EFV50174.1| putative integrase core domain protein [Trichinella spiralis]
Length = 1151
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ G K+DLS+AY V + ++ L + LY LPF +ASAP +F K+ +
Sbjct: 499 LRGGKTFTKLDLSEAYLQVELDEESKKILVINTHKGLYHYNRLPFSVASAPAIFQKVMDT 558
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + N V Y DD++L R + + L+ ++ E+ + +
Sbjct: 559 MLAGIPN----VAAYSDDIILTGATDDEHRRTLKLVLGRLKEFGLRIHKEKCTFFQREV- 613
Query: 225 QYLG 228
+YLG
Sbjct: 614 EYLG 617
>gi|336238526|ref|XP_003342559.1| hypothetical protein SMAC_09714 [Sordaria macrospora k-hell]
gi|380086697|emb|CCC05652.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 508
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 61/280 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + + K+D+ A+ + ++ H+ ++ + R L+ PFGL AP F
Sbjct: 71 DAICKAKIFTKLDVIAAFNRIRVKEGHEWLIAFITRFGLFESLVCPFGLQGAPGTF---Q 127
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N+I + L + L + YLDD+L+ +++ S + + + +++++ +
Sbjct: 128 NYINDVLHDILDIYATAYLDDILVYSENEEEHVSHVKEVLNRMIKAGLQIDIDK-CKFHT 186
Query: 222 QTCQYLGIMWNP---TLDSKSLPL-------EKQSTIQRYL------------------- 252
Q +YLG++ P +DS+ + + + T+QR+L
Sbjct: 187 QRTKYLGLIITPGGIEMDSQKVSAVISWEAPDSKRTLQRFLGFANFYHRFIKHFSIIAGP 246
Query: 253 ---LTLTQIQWWSVALHRSS--------------PIFPQAPQVFVSTDASNSGWGAIVDN 295
LT W + H+ S I+ A + V TDASN G +
Sbjct: 247 LYELTKKTEDWHWNSQHQKSFETLKKAFSSGPVLRIYDWAKRTVVETDASNWACGGTLSQ 306
Query: 296 HSLGGVW----------SDHQEMWHINLKEMFAVRSALER 325
+ G+ S + + I KE+ A+ ALE
Sbjct: 307 YDDEGILRPVAYFSQRHSSAECNYDIYDKELLAIIKALEE 346
>gi|270016690|gb|EFA13136.1| hypothetical protein TcasGA2_TC002008 [Tribolium castaneum]
Length = 429
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 145/369 (39%), Gaps = 77/369 (20%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGL 151
++ L N + D L R + IDL+ + + + P+ + + + Y +PFGL
Sbjct: 50 RYPLPNINDILDKLGRSQYFSTIDLASGFHQIEVDPNDVQKTAFTVENGHYEFVRMPFGL 109
Query: 152 ASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR-- 208
+AP F ++ + N LR + IVYLDD+++ S L+ + A LR
Sbjct: 110 KNAPSTFQRVMD---NVLRGIVNNCCIVYLDDIIVF---STSLQEHIQKLTAVFDRLRKF 163
Query: 209 -WSVNLERSVLWPVQTCQYL-------GIMWNP-----TLDSKSLPLEKQ--------ST 247
+ + L++S + YL GI NP LD KQ
Sbjct: 164 NFKIQLDKSEFLK-KEVNYLGHVITPEGIKPNPDKIKAILDYSIPTTPKQLKGFLGLIGY 222
Query: 248 IQRYLLTLTQI-QWWSVALHRSSPIFP----------------------QAP----QVFV 280
++++ +I + ++ L + I P Q P Q +
Sbjct: 223 YRKFIKNFAKITKPLTIRLKKDHKIDPNETDYKNCFEFCKNLLTNDPILQYPDFDKQFIL 282
Query: 281 STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
+TDASN GA++ ++G ++H+ + KE+ A+ A + P L
Sbjct: 283 TTDASNYAIGAVLSQGTIGSDLPVAFASRTLNEHEINYSTIEKELLAIVWATKYFRPYLY 342
Query: 332 DKVVLIQSDNQTVV-SYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWA 390
+ I +D+Q + + KE +K + +E FD + Y GK N+ A
Sbjct: 343 GRKFKIVTDHQPLKWLFSLKEPNSKLVRWRLRLEE-FDYEI--------HYKKGKLNSNA 393
Query: 391 DSLSRQKEL 399
D+LSR L
Sbjct: 394 DALSRPPNL 402
>gi|32489461|emb|CAE05815.1| OSJNBa0028M15.7 [Oryza sativa Japonica Group]
Length = 1822
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 148/367 (40%), Gaps = 68/367 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ L KIDL Y + IR + R
Sbjct: 941 YRALNEVTIKNKYPLPRIDDLFDQLKGATVLSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1000
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1001 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFVDDILIYSQSEEDHQHHLRLV 1058
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 1059 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVHS 1117
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS + SSP I P
Sbjct: 1118 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFKTLKEKLVSSPVLILPDT 1177
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + E+ AV AL+ L
Sbjct: 1178 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTRDLELAAVVHALKIWLHY 1237
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1238 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1289
Query: 390 ADSLSRQ 396
AD+LSR+
Sbjct: 1290 ADALSRK 1296
>gi|88595589|gb|ABD43101.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGSTVFSKIDLRSGYYQLRVKDSDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++D AR
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKCVVVFIDDILIYSKDE---EEHARHL 120
Query: 201 VATLQSLR 208
L+ LR
Sbjct: 121 HIVLEILR 128
>gi|62082796|gb|AAX62226.1| reverse transcriptase [Pinus radiata]
Length = 117
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L+ + KIDL Y VPI PS + ++
Sbjct: 10 YRALNKITVRNRYPIPRIDDLLDQLKGAKYFSKIDLKSGYHQVPIEPSDVWKTAFKAKEG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
L+ +PFGL +AP F +L + I N V+VYLDDLL+
Sbjct: 70 LFEWLVMPFGLMNAPATFMRLMDDILWPFTN--SFVVVYLDDLLI 112
>gi|77548510|gb|ABA91307.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR ++ R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKMFSKIDLRSGYHQLKIRTEDIPKTALSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LQKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|189236883|ref|XP_001807231.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1063
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ G + +DL Y +P+ +++ S V Y +PFGL +AP+ F +
Sbjct: 272 DRLQGGVYFTSLDLRSGYHQIPLSEESKKYTSFVTPFGQYEYNRVPFGLTNAPRTFQRFM 331
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
N I L+ VYLDD+ L +D + L+S ++NL++
Sbjct: 332 NKI---LKPARENAAVYLDDVFLHAKDVNEALQNLQKVFEILRSEGLTLNLKK 381
>gi|51038165|gb|AAT93968.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51038205|gb|AAT94008.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1500
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y+ + IR + + R
Sbjct: 619 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYYQLRIREEDIPKTAFITRYG 678
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 679 LFECTVMSFGLTNAPAFFVNLMNKV--FMEFLDKIVVVFIDDILIYSKSEEEHEQHLRLV 736
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 737 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 767
>gi|58532065|emb|CAE05987.3| OSJNBa0004L19.16 [Oryza sativa Japonica Group]
Length = 1731
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 884 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 943
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 944 LYEFTVMTFGLTNAPAFFMNLMNQV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 1001
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + LW + ++LG
Sbjct: 1002 LGKLREHQLYAKLSKCELW-LSEVKFLG 1028
>gi|341038398|gb|EGS23390.1| hypothetical protein CTHT_0000780 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 360
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 34/257 (13%)
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
F ++ N I + L + G V+VY+DD+L+ ++ R + LQ + +VN E S
Sbjct: 86 TFQRMMNHIFDVLLDEG--VLVYVDDILIYSRTMPEHDRLVREVLTRLQKHKLAVNAENS 143
Query: 217 VLWPVQTCQYLGIMWNPTLDSKSLPLEKQS---TIQRYLLTLTQIQWWSVALHRSSPIFP 273
V W V ++LG + + S SLP + S +QR L + + L + P P
Sbjct: 144 V-WNVGEVEFLGYI----ITSHSLPKNQWSWTPEMQRAFDKLKAVSCEAPVLIHADPTKP 198
Query: 274 QAPQVFVSTDASNSGWGAIV----DNHSLGGVWSDHQEM------WHINLKEMFAVRSAL 323
+ TDAS+ GA++ D+ L V ++M + I+ KE+ A+ A
Sbjct: 199 ----FHLFTDASDYALGAVLNQEGDDGRLHPVGYHSRKMAPAEINYVIHDKELLAIVDAF 254
Query: 324 ERKLPVLQDK--VVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARY 381
++ L+ + SD+ + ++ T R+ +LA + Y
Sbjct: 255 KKWRRYLEGAPHTAQVYSDHNNLRYFL-----TSKVLNRRQTRWAQELA---GYNFVINY 306
Query: 382 IPGKFNTWADSLSRQKE 398
IPGK N AD+LSR+++
Sbjct: 307 IPGKKNIPADTLSRREQ 323
>gi|301615219|ref|XP_002937077.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 917
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 150/376 (39%), Gaps = 79/376 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D ++ K+DL AY + IR + + D
Sbjct: 224 YRGLNKITVKNRYPLPLISELFDRVKGATIFSKLDLRGAYNLIRIREGDEWKTAFNTHDG 283
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL + P VF +L N I RN LG V+VYLD +L+ + + R+ +
Sbjct: 284 HYEYLVMPFGLCNTPAVFQELVNDI---FRNLLGRCVVVYLDAILIYSNNLSDHRAHVQE 340
Query: 200 AVATLQSLRWSVNLER------SVLWPVQTCQYLGIMWNPTLDSKSL----PLEKQSTIQ 249
+ L+ + +E+ SV +P + G+ +P L PL ++ IQ
Sbjct: 341 VLLRLRQNQLYAKIEKCIFEVPSVYFPGYIISHKGLEMDPVKVQAILTWVQPLSLRA-IQ 399
Query: 250 RYL--------------------LTLTQ-----IQWWSVALHR---------SSPIF--P 273
R+L LT+ W AL S+P+ P
Sbjct: 400 RFLGFANYYRQFIKNFSTLMAPITALTKKGADPSMWSEEALTAFKLLKEAFISAPVLLHP 459
Query: 274 QAPQVF-VSTDASNSGWGAIVDN-HSL----------GGVWSDHQEMWHINLKEMFAVRS 321
+ F V DAS G GA++ H + +S + + I +E+ A++
Sbjct: 460 DSALPFLVEVDASELGAGAVLSQCHPITNKVHPCSFFSKKFSPTEMNYDIGNRELLAIKL 519
Query: 322 ALE--RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMA 379
A E R L VV + +D++ ++ YI K + ALF NIT
Sbjct: 520 AFEEWRHLLEGAKHVVTVFTDHKNLL-YIE---SAKRLNPRQARWALFFSRFNFNIT--- 572
Query: 380 RYIPGKFNTWADSLSR 395
Y PG+ N AD+LSR
Sbjct: 573 -YRPGEKNVKADALSR 587
>gi|147811294|emb|CAN59957.1| hypothetical protein VITISV_042690 [Vitis vinifera]
Length = 272
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|384500383|gb|EIE90874.1| hypothetical protein RO3G_15585, partial [Rhizopus delemar RA 99-880]
Length = 1031
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 859 IFTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFLSAPFGLKHVSSHFMRIMNLILSDL 918
Query: 170 RNLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
N V VY+DD+++G DS+ QA +AV + + + + ++ LG
Sbjct: 919 SN----VHVYVDDIVIGTPGDSMEKHYQAVSAVIDRLTQHNMILNPQKCHFGKRSVHLLG 974
Query: 229 IMWNPTLDSKSL---PLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDAS 285
+ KSL ++ +Q + ++ I +V L SP P ++V+TDAS
Sbjct: 975 FCI--SEKGKSLDPHDIDWTPELQVHFQSIKDILCSNVVL---SPYDP-TKSLYVATDAS 1028
Query: 286 NSG 288
N+G
Sbjct: 1029 NTG 1031
>gi|270006314|gb|EFA02762.1| hypothetical protein TcasGA2_TC008495 [Tribolium castaneum]
Length = 1365
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ G + +DL Y +P+ +++ S V Y +PFGL +AP+ F +
Sbjct: 574 DRLQGGVYFTSLDLRSGYHQIPLSEESKKYTSFVTPFGQYEYNRVPFGLTNAPRTFQRFM 633
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
N I L+ VYLDD+ L +D + L+S ++NL++
Sbjct: 634 NKI---LKPARENAAVYLDDVFLHAKDVNEALQNLQKVFEILRSEGLTLNLKK 683
>gi|147844414|emb|CAN82095.1| hypothetical protein VITISV_009853 [Vitis vinifera]
Length = 125
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL +Y+ V I + + V R
Sbjct: 5 YRALNKVTIKNKYPIPLIADLFDQLGRVRYFTKLDLRSSYYQVRIAEGDEPKTTCVTRYD 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIII 107
>gi|88595467|gb|ABD43040.1| reverse transcriptase [Orobanche cernua var. australiana]
Length = 143
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ + K + N + +P D LQ KIDL Y + IR S + R
Sbjct: 6 YREMNKVTIKNKYLLPRIDDLFDQLQGATMFSKIDLRSGYHQLRIRKSDIPKSAFRSRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLINRV--FIEYLDKFVVVFIDDILIYSKNPDEHEEHLRLV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+S + L + W
Sbjct: 124 LNLLRSEKLYAKLSKCEFW 142
>gi|4808993|gb|AAD30048.1|AF133051_3 pol polyprotein [Walleye epidermal hyperplasia virus 1]
Length = 1200
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTNWIANYLRNL 172
IDLS A+F VPI P Q + + Y T LP G +P +F++ L + ++ +L
Sbjct: 264 IDLSNAFFSVPIHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLSKIKDSL 323
Query: 173 GMRVIVYLDDLLLGNQD 189
+ +Y+DD+L+ ++D
Sbjct: 324 TSEICIYMDDVLIASRD 340
>gi|341900941|gb|EGT56876.1| hypothetical protein CAEBREN_09057 [Caenorhabditis brenneri]
Length = 1390
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G F +IDL++AY + + + LS+ +Y LPFG+ SAP +F ++ + + N
Sbjct: 567 GKFFTQIDLAEAYLQIELDDQSKNLLSINTHKGIYQFQRLPFGVKSAPGIFQQVMDQLVN 626
Query: 168 YLRNLGMRVIVYLDDLLL 185
+ V YLDD+++
Sbjct: 627 GIEG----VSAYLDDIII 640
>gi|147864936|emb|CAN81537.1| hypothetical protein VITISV_012160 [Vitis vinifera]
Length = 346
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDESKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL ++P F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNSPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|384485786|gb|EIE77966.1| hypothetical protein RO3G_02670 [Rhizopus delemar RA 99-880]
Length = 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 73 LSSRDGFQDLGDRAFL----SLKKFHLINHFR---VP---DFLQRGDFLVKIDLSQAYFH 122
LS+ D + R + L +F + HF+ VP + ++ D++ KIDL AY
Sbjct: 136 LSAEDQLHEQTKRRPILDRQKLNRFLQVEHFQMEGVPTLREIIEENDYICKIDLKDAYVV 195
Query: 123 VPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAP 155
+PI P Q +LS + T+Y L FGL+ AP
Sbjct: 196 IPIHPDSQDYLSFENQGTVYRYKSLAFGLSVAP 228
>gi|341889614|gb|EGT45549.1| hypothetical protein CAEBREN_25839 [Caenorhabditis brenneri]
Length = 1384
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G F +IDL++AY + + + LS+ +Y LPFG+ SAP +F ++ + + N
Sbjct: 561 GKFFTQIDLAEAYLQIELDDQSKNLLSINTHKGIYQFQRLPFGVKSAPGIFQQVMDQLVN 620
Query: 168 YLRNLGMRVIVYLDDLLL 185
+ V YLDD+++
Sbjct: 621 GIEG----VSAYLDDIII 634
>gi|38344634|emb|CAE05067.2| OSJNBa0094P09.6 [Oryza sativa Japonica Group]
Length = 1803
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 155/388 (39%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 922 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 981
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 982 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1039
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 1040 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQIRS 1098
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS + SSP I P
Sbjct: 1099 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDT 1158
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1159 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1218
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +DN++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1219 LIGNRCEIYTDNKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1270
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++ PE+ Q + A
Sbjct: 1271 ADALSRKSHCNTLNVRSFPPELNQQMEA 1298
>gi|449680368|ref|XP_004209571.1| PREDICTED: uncharacterized protein K02A2.6-like [Hydra
magnipapillata]
Length = 976
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+ KIDL AY + + Q +V L TCLPFG+ +A +F + I + +
Sbjct: 347 YFAKIDLKGAYHQIEMDKEAQEITTVNTPIGLLRWTCLPFGIKTASAIFQRA---IESVV 403
Query: 170 RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSV 217
++ +I++ DD+ +G +++ L+S ++ L+ S+N +SV
Sbjct: 404 GDIIPNMIIFQDDICVGAKNAEELKSNLNKILSKLKESGMSINKRKSV 451
>gi|88595525|gb|ABD43069.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKSEEEHAHHLRVV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDILRTERLYAKFSKCEFW 142
>gi|38346034|emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa Japonica Group]
Length = 1470
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDNLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMEYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LQKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|88595537|gb|ABD43075.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLLDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYR 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSRNEEEHARHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDILRTERLYAKFSKCEFW 142
>gi|326667880|ref|XP_003198689.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1258
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 148/379 (39%), Gaps = 76/379 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 487 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 546
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 547 V--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IQNQLYAKSSKCEFHQTC 602
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 603 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 662
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 663 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 722
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 723 SLVTKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 782
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR--QKELPDW 402
+ YI +S K L +A + L YIPG N AD+LSR E ++
Sbjct: 783 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADTLSRLSDDETSEY 835
Query: 403 HLLPEVTQHIFA---QWGV 418
H P + + QW +
Sbjct: 836 HDEPIIKDPLIVAPIQWDI 854
>gi|62701703|gb|AAX92776.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550523|gb|ABA93320.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1429
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 89 SLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
+L + + N + +P D L+ KIDL Y H+ IR + R LY
Sbjct: 596 ALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHHLRIREEDIPKTAFTTRYGLY 655
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + +
Sbjct: 656 EFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLCLVLG 713
Query: 203 TLQSLRWSVNLERSVLWPVQTCQYLG 228
LQ + L + W + ++LG
Sbjct: 714 KLQEHQLYAKLSKCEFW-LSEVKFLG 738
>gi|189236292|ref|XP_001815280.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1505
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F +DL+ Y+ +P+ + V D Y +PFGLA+AP VF +
Sbjct: 726 DKLNGAKFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLANAPAVFQRAM 785
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + LR Y+DDLL+ ++D + + L+ ++ L + + Q
Sbjct: 786 NKVLGPLRF--QTAFCYIDDLLIPSKDFETGLNNLQTVFQLLRQFGLTLKLSKCCFFGSQ 843
Query: 223 TCQYLG 228
+YLG
Sbjct: 844 I-EYLG 848
>gi|115457202|ref|NP_001052201.1| Os04g0191000 [Oryza sativa Japonica Group]
gi|38346036|emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa Japonica Group]
gi|113563772|dbj|BAF14115.1| Os04g0191000 [Oryza sativa Japonica Group]
Length = 1463
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 87 FLSLKKFHLINHFRVP--DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM 144
+ +L + + F +P D L F K+DL Y V +RP + D LY
Sbjct: 571 YRALNALTVKDAFPIPVVDELHGARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEF 630
Query: 145 TCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQ 188
+PFGL +AP F L N + +LR V+V+ DD+L+ ++
Sbjct: 631 LVMPFGLCNAPATFQALMNDVLRPFLRRF---VLVFFDDILIYSE 672
>gi|68362780|ref|XP_690943.1| PREDICTED: hypothetical protein LOC562472 [Danio rerio]
Length = 1496
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 85 RAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSV 135
R L +K + ++ F R+ + ++R ++ +DL + Y+ VP+ + + +
Sbjct: 1097 RVCLDFRKLNAVSKFDTYPMPRIDELVERIGRAKYITTLDLCKGYWQVPLEKTSRECTAF 1156
Query: 136 VYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LY +PFGL AP F +L N + LRN YLDD+++
Sbjct: 1157 RTPVGLYHFKTMPFGLHGAPATFQRLMNQV---LRNCEEYSAAYLDDVVI 1203
>gi|366987413|ref|XP_003673473.1| hypothetical protein NCAS_0A05290 [Naumovozyma castellii CBS 4309]
gi|342299336|emb|CCC67087.1| hypothetical protein NCAS_0A05290 [Naumovozyma castellii CBS 4309]
Length = 926
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN-WIANYLRN 171
++DL Y V + P Q + V + Y +PFGL +AP F +L N + Y
Sbjct: 10 QLDLVSGYHQVEVEPKDQYKTAFVTHEGQYIWKVMPFGLTNAPSTFQRLMNETLKGY--- 66
Query: 172 LGMRVIVYLDDLLLGNQD 189
+G VIVYLDD+L+ ++D
Sbjct: 67 IGKFVIVYLDDILIFSKD 84
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 27/150 (18%)
Query: 268 SSPI---FPQAPQVFVSTDASNSGWGA----IVDNHSLGGVWS-------DHQEMWHINL 313
S+P+ F ++ + V+TDAS+ GA + D ++ GV + Q W +
Sbjct: 203 SAPVLLPFDESKGIVVTTDASDYAVGATLELVNDQGNVEGVVAYMSAKLHGAQLNWPVRE 262
Query: 314 KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLR--EVEALFDLAV 371
KE +A+R ALE L+ K ++ +D+++ + ++H + T S K+ R + A +D +
Sbjct: 263 KEGYAIRLALEHWSHYLKGKHFVLHTDHES-LKFLHSKKDT-SPKIARWLDTFAEYDFEI 320
Query: 372 RHNITLMARYIPGKFNTWADSLSRQKELPD 401
YIPG+ N AD LSR+ +L +
Sbjct: 321 --------VYIPGEHNR-ADGLSRRPDLKN 341
>gi|270017019|gb|EFA13465.1| hypothetical protein TcasGA2_TC004276 [Tribolium castaneum]
Length = 1490
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + H+ +P D L+ + +DLS Y VP+ + + + D
Sbjct: 702 YRALNKKTVKQHYPLPLIDDQLDRLRGQIYFTSVDLSMGYHQVPMSRDARGKTAFITPDG 761
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+YC + FGLA+AP F +L N + LR + YLDD+++
Sbjct: 762 VYCFKRMSFGLANAPSQFQRLINIVLGNLRY--DTAMAYLDDIII 804
>gi|88595635|gb|ABD43124.1| reverse transcriptase [Orobanche hirtiflora]
Length = 143
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N I ++ +L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKI--FIEHLDTCVVVFIDDILI 108
>gi|308490919|ref|XP_003107651.1| hypothetical protein CRE_13303 [Caenorhabditis remanei]
gi|308250520|gb|EFO94472.1| hypothetical protein CRE_13303 [Caenorhabditis remanei]
Length = 738
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 276 PQVFVSTDASNSGWGAIVDNHS---------LGGVWSDHQEMWHINLKEMFAVRSALERK 326
PQ F+ TDAS G GA++ N S LGG ++ L+E+ AV+ A+ER
Sbjct: 241 PQCFLFTDASAEGLGAVLKNGSGQTVMRMSELGGTGFQNE---SSALRELRAVQMAVER- 296
Query: 327 LPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREV--EALFDLAVRHNITLMARYIPG 384
+ + VLI +D+Q V + K ++ +++ E E+L + I +IP
Sbjct: 297 MASWKRGAVLIHTDSQAAVIILRKGSMRRTLQIVAERVWESLRSIGQAKFI-----WIPR 351
Query: 385 KFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFA 425
+ N AD SR + DW + + +WG + D FA
Sbjct: 352 EQNKEADEASRDFDYDDWAVQNWAFEWAQKRWGEVKCDWFA 392
>gi|88595523|gb|ABD43068.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVLKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKSEEEHTHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDVLRTERLYAKFSKCEFW 142
>gi|353230590|emb|CCD77007.1| hypothetical protein Smp_184750 [Schistosoma mansoni]
Length = 378
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ + KIDL +AY ++P+ ++ L+ +PFGL +A Q F + +
Sbjct: 165 LQGMNIFTKIDLVRAYHNIPVADEDIPKTAITTPFGLFEFIRMPFGLRNAAQTFQR---F 221
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL-RWSVNLERS-VLWPVQ 222
I N LR++ Y+DDLL+ + D L+S + L+ L +N+ +S ++ VQ
Sbjct: 222 IDNLLRDMPF-AQGYIDDLLIASPD---LQSHEQHVKTVLKRLDEHGINIHQSKCVFGVQ 277
Query: 223 TCQYLGIMWNP 233
T ++LG +P
Sbjct: 278 TLEFLGHTISP 288
>gi|147858167|emb|CAN83929.1| hypothetical protein VITISV_025158 [Vitis vinifera]
Length = 2249
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 90 LKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L K + N + +P D L + + K+DL Y+ V I + + V R Y
Sbjct: 572 LNKVTIKNKYPIPLAAELFDRLSKASYFTKLDLRSGYWQVQIAAGDEGKTTCVTRYGSYE 631
Query: 144 MTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLL 185
+PFGL +AP +F L N + +YL ++VYLDD+++
Sbjct: 632 FLVMPFGLTNAPAIFCNLMNDVLFDYLDAF---LVVYLDDIVV 671
>gi|88595617|gb|ABD43115.1| reverse transcriptase [Orobanche bungeana]
Length = 143
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATIFSKIDLRSGYYQLRVKESDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N I ++ +L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKI--FIEHLDTCVVVFIDDILI 108
>gi|32487330|emb|CAE05905.1| OSJNBa0061C08.12 [Oryza sativa Japonica Group]
Length = 1971
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 148/367 (40%), Gaps = 68/367 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 852 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 911
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 912 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 969
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 970 LRKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRS 1028
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS + SSP I P
Sbjct: 1029 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFKTLKEKLVSSPVLILPDT 1088
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1089 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYSTHDLELAAVVHALKILRHY 1148
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N +
Sbjct: 1149 LIGNRCEIYTDHKS-LKYIF----TQSDMNLRQRRWL-ELIKDYDVGI--HYHPGKANVF 1200
Query: 390 ADSLSRQ 396
AD+LSR+
Sbjct: 1201 ADALSRK 1207
>gi|88595531|gb|ABD43072.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ KIDL Y+ + ++ S+ + R Y +PFGL +AP VF +L
Sbjct: 28 DQLQGATVFSKIDLRSGYYQLRVKESYVPKTAFRTRYGHYEFVVMPFGLTNAPAVFMQLM 87
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
N + ++ L V+V++DD+L+ ++ R + L++ R + W
Sbjct: 88 NKV--FIEYLDKFVVVFIDDILIYSKSEEEHTHHLRIVLDVLRTERLYAKFSKCEFW 142
>gi|77554997|gb|ABA97793.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1435
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 625 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIAKTAFTTRYG 684
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 685 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 742
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 743 LGKLREHQLYAKLSKCEFW-LSEVKFLG 769
>gi|88595495|gb|ABD43054.1| reverse transcriptase [Orobanche cernua var. cernua]
Length = 143
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y + IR S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRKSDIPKSAFRSRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFG +AP VF +L N + ++ +L V+V++DD+L+ ++D R
Sbjct: 66 HYEFVVMPFGHTNAPAVFMQLMNRV--FIEHLDKFVVVFIDDILVYSKDEEEHEEHLRTV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+S + L + W
Sbjct: 124 LNLLRSEQLYAKLSKCEFW 142
>gi|308478699|ref|XP_003101560.1| hypothetical protein CRE_10350 [Caenorhabditis remanei]
gi|308263014|gb|EFP06967.1| hypothetical protein CRE_10350 [Caenorhabditis remanei]
Length = 1069
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCL 147
+F L N FL+ +F D Y H+ I + LS + + L
Sbjct: 529 RFKLENMKTAWPFLENANFAATFDFKSGYHHIKIHRDSRDLLSFSLSNPPAAPYFFFKGL 588
Query: 148 PFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD-LLLGNQDSVLLRSQAR 198
PFGLA+AP +F K+ + R G+++ +YLDD L++G + + R+ R
Sbjct: 589 PFGLATAPWLFTKIFKVLVRKWRAEGIKMFLYLDDGLIVGETEYEVARASRR 640
>gi|88595483|gb|ABD43048.1| reverse transcriptase [Orobanche cernua var. cernua]
Length = 143
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYRLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSRNEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDILRTERLYAKFSKCEFW 142
>gi|384499005|gb|EIE89496.1| hypothetical protein RO3G_14207 [Rhizopus delemar RA 99-880]
Length = 374
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 254 TLTQIQWWS--VALHRSSPIF---PQA--PQVFVSTDASNSGWGAIVDNHSLGGVWSDHQ 306
+L +QWW + ++ PI P++ P + + DASN+GWG + G W++ +
Sbjct: 104 SLQDLQWWEKWLTINNGLPIHLTPPKSLTPTLTIHVDASNTGWGVKSNVMETSGFWTEEE 163
Query: 307 EMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEAL 366
+ IN++E+ + AL+ ++ + I SDN+T + Y + G + + R +E+
Sbjct: 164 KETSINVRELQTIYFALKLHARNAKNSTIHIFSDNKTALKYSYS--GNQEY-TSRPIEST 220
Query: 367 FDLAVRHNIT 376
+ A+R T
Sbjct: 221 SNSALRMETT 230
>gi|326673530|ref|XP_003199909.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1475
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 136/354 (38%), Gaps = 77/354 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 388 LRSAQYFTKLDLRSAYNLIRIRQRDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 447
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L VIVY+DD+L+ + RA + L + + + QTC
Sbjct: 448 V--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLERLIQNQLYAKISKCEFH--QTC 503
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 504 ISFLGYIISPEGVAMDQQKVDSVTQWPQPVTIRQLQRFLGFANFYRRFIRNFSSVAAPLT 563
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 564 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFIVEIDASNTGIGAILSQR 623
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK----VVLIQSDN 341
SL + + + + +E+ A+++ALE LQ V+ N
Sbjct: 624 SLVTKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLQGAKHPFTVITDHKN 683
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 684 ---LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 727
>gi|294864633|gb|ADF46140.1| reverse transcriptase [Eleocharis xyridiformis]
Length = 143
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D +QR KIDL Y + IRPS + R
Sbjct: 6 YRELNKATVKNRYPLPRIDDLFDQMQRSSVYFKIDLRTGYHQLRIRPSDVEKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP F L N + + +L V+V++DD+L+ ++ R
Sbjct: 66 HYEFLVMPFGLTNAPAAFMDLMNRV--FREHLDSFVVVFIDDILVYSKSIKEHEEHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+ + + W
Sbjct: 124 LCQLRKHKLFAKFSKCEFW 142
>gi|1402848|gb|AAC28743.1| pol-like protein [Ceratitis capitata]
Length = 1060
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTN 163
L F IDL + +P++ S + + Y T LPFGL +AP +F + L +
Sbjct: 280 LGSNTFFSVIDLKSGFHQIPLKNSDIEKTAFSINNEKYEFTRLPFGLKNAPSIFQRTLDD 339
Query: 164 WIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ +Y +G VY+DD+++ +++ + + TL+ V L++ + +
Sbjct: 340 ILRDY---IGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLEKANMKVQLDKCKFFE-KE 395
Query: 224 CQYLGIMWNP 233
++LG + P
Sbjct: 396 VEFLGFIVTP 405
>gi|384486074|gb|EIE78254.1| hypothetical protein RO3G_02958 [Rhizopus delemar RA 99-880]
Length = 792
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 136/360 (37%), Gaps = 79/360 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L K+D+ AY + I + + + L+ T +PFGL +AP F L
Sbjct: 2 DRLSSAKVYTKLDIRNAYHRIRIAKGDEWKTAFRTKYGLFEYTVMPFGLTNAPASFQSLI 61
Query: 163 NWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N LR R V+VYLDD+L+ ++++ + + L+ + E+ + V
Sbjct: 62 N---ETLREFLDRFVVVYLDDILIFSEETAEHQHHVSLVLEKLREAKLYAKAEKCE-FDV 117
Query: 222 QTCQYLGIMWNPTLDSKSLPLEKQSTI----------------------QRYLLTLTQIQ 259
+LG +PT S+ K STI +R++ +++
Sbjct: 118 DRVDFLGFTISPT--GISMDQSKVSTITAWPTPKSVHDVQVFLGFANFYRRFIKDYSKLT 175
Query: 260 WWSVALHRSSPI-----------------FPQAP---------QVFVSTDASNSGWGAIV 293
AL + + I F AP Q+ V TDAS+S I+
Sbjct: 176 LPITALTKKNCIFTWSSDADAAFQGLKQAFTSAPILRHFDPNSQIIVETDASDSAVAGIL 235
Query: 294 DNHSLGGV----------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQT 343
+ + + + + I KE+ A+ + E LQ + +Q
Sbjct: 236 SQYGTDNLLHPVAFYSRKLTISEANYDIYDKELLAIVNCFETWRHYLQG------ASHQI 289
Query: 344 VVSYIHKE----GGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKEL 399
+V HK TKS + ++F ++ + Y PG N AD+L+R+ ++
Sbjct: 290 IVYTDHKNLEYFASTKSLNRRQARWSIF----MNSFDFVITYRPGTKNPKADALTRRSDM 345
>gi|254587279|emb|CAX83696.1| Gap-Pol polyprotein [Schistosoma japonicum]
Length = 1365
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+ K+DLS AY +P+ +++L++ L+ LPFG+ +AP +F ++ + + +
Sbjct: 576 YFAKLDLSDAYLQIPVAEECKQYLTINTHKGLFRYNRLPFGVKTAPSIFQQIMDTMLQDI 635
Query: 170 RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGI 229
YLDD+L+ D L + + + + + + E+ + +Q +YLG
Sbjct: 636 PGTA----AYLDDILIMGVDQADLEKKLDSVLTRIGDFGFPLRAEK-CDFHLQQVRYLGF 690
Query: 230 M 230
+
Sbjct: 691 I 691
>gi|125820708|ref|XP_686350.2| PREDICTED: hypothetical protein LOC558087 [Danio rerio]
Length = 1276
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R S KF R+ D L+R F+ +DL + Y+ VP+ S + + L
Sbjct: 903 RKLNSQSKFDAYPMPRIDDLLERIGQARFITTLDLCKGYWQVPLHHSSKALTAFRTPVGL 962
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
Y T LPFGL AP F +L + + L+ YLDD+++ + R +
Sbjct: 963 YQFTVLPFGLHGAPATFQRLMDQV---LQGCEEYAAAYLDDVVIYSHTWEDHLKHLRQTL 1019
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+Q+ S+N+ + W YLG +
Sbjct: 1020 EKIQAAGLSLNVVK-CEWGRGETNYLGYI 1047
>gi|301618701|ref|XP_002938751.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1439
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 145/351 (41%), Gaps = 72/351 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + R + +PFGL +AP F N
Sbjct: 591 LRSARVFTKLDLRGAYNLVRIRQGDEWKTAFRTRYGHFEYLVMPFGLCNAPATFQHFVND 650
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L + VIVYLDD+L+ + R + + L++ + LE+ + T
Sbjct: 651 I--FRDFLDLFVIVYLDDILIFSSSLEEHRLHVKQVFSRLRTHKLFAKLEK-CEFEKSTI 707
Query: 225 QYLGIMWNP---TLDSKSL------PL-EKQSTIQRYL--------------LTLTQIQW 260
++LG + +P ++DS+ + P+ + +QR++ T+ I
Sbjct: 708 EFLGFVISPEGMSMDSRKVSAVLDWPVPNNRKAVQRFVGFANFYRKFIKDFSKTIAPITA 767
Query: 261 WSVALHR-------------------SSPIF--PQAPQVFV-STDASNSGWGAIVDNHS- 297
+ +L + S+PI P + FV DAS GA++ +
Sbjct: 768 LTSSLKKFCWTPEAQQAFSDLKNRFTSAPILKHPDPTRPFVLEVDASEYAIGAVLSQRNE 827
Query: 298 ----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSDNQTVV 345
S ++ + + +E+ A++SA + +L+ +L+ SD++ +
Sbjct: 828 VQGLLHPVAFFSKKLSSSEQNYDVGDRELLAIKSAFQEWRHLLEGAAHPILVFSDHKN-L 886
Query: 346 SYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
Y+ +S + LR +A + L R N + R PG N AD+LSR
Sbjct: 887 EYL------RSARRLRPCQARWALFFSRFNFHVTFR--PGSKNGKADALSR 929
>gi|86371679|gb|ABC94893.1| polyprotein [Oryza australiensis]
Length = 1469
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 597 YRSLNEVTIKNKYPLPRIDDLFDQLKGAQVFSKIDLRSGYHQLKIRAGDIPKTAFSTRYG 656
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +++ R
Sbjct: 657 LYEFTVMSFGLTNAPAYFMNLMNKV--FMEYLDKFVVVFIDDILIYSKNDEEHAEHLRLV 714
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ R + W ++ +LG
Sbjct: 715 LEKLREHRLYAKFSKCEFW-LKEVAFLG 741
>gi|21741597|emb|CAD39713.1| OSJNBa0052P16.18 [Oryza sativa Japonica Group]
Length = 1804
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 158/388 (40%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 923 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 982
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 983 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1040
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G++ +P + ++ T+
Sbjct: 1041 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVVVDPETVTAVTDWKQPKTVTQIRS 1099
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS + SSP I P
Sbjct: 1100 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDT 1159
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1160 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1219
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1220 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1271
Query: 390 ADSLSRQKELPDWH---LLPEVTQHIFA 414
AD+LSR+ + + + PE++Q + A
Sbjct: 1272 ADALSRKSHCNNLNARSIPPELSQQMEA 1299
>gi|88595527|gb|ABD43070.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKSEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LNILRTERLYAKFSKCEFW 142
>gi|50543444|ref|XP_499888.1| YALI0A08932p [Yarrowia lipolytica]
gi|50543464|ref|XP_499898.1| YALI0A09317p [Yarrowia lipolytica]
gi|50551309|ref|XP_503128.1| YALI0D21846p [Yarrowia lipolytica]
gi|50552642|ref|XP_503731.1| YALI0E09350p [Yarrowia lipolytica]
gi|50554743|ref|XP_504780.1| YALI0E34606p [Yarrowia lipolytica]
gi|49168661|emb|CAE02703.1| polyprotein [Yarrowia lipolytica]
gi|49645753|emb|CAG83815.1| YALI0A08932p [Yarrowia lipolytica CLIB122]
gi|49645763|emb|CAG83825.1| YALI0A09317p [Yarrowia lipolytica CLIB122]
gi|49648996|emb|CAG81326.1| YALI0D21846p [Yarrowia lipolytica CLIB122]
gi|49649600|emb|CAG79321.1| YALI0E09350p [Yarrowia lipolytica CLIB122]
gi|49650649|emb|CAG80387.1| YALI0E34606p [Yarrowia lipolytica CLIB122]
Length = 2621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN-HSL 298
L + K + + L + LHR P P + ++TDAS+ GWGA++ + S+
Sbjct: 1871 LKITKTEATESAFMALKKAMVSPAVLHRYDPTLP----IVITTDASSLGWGAVMSHIVSV 1926
Query: 299 G------------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
G G+W+ + + E AV+ ALE+ + +I++DNQ +V
Sbjct: 1927 GPPAARRPVRFESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVF 1986
Query: 347 YIHKEGGTKSFKLLREVEALFD--LAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + + A+F A R++ G+ N AD LSR+K
Sbjct: 1987 LLQQ-------SRVELPNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREK 2032
>gi|308458391|ref|XP_003091538.1| hypothetical protein CRE_19532 [Caenorhabditis remanei]
gi|308256589|gb|EFP00542.1| hypothetical protein CRE_19532 [Caenorhabditis remanei]
Length = 1398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G F +IDL+ AY + + ++ L + L LPFG+ +AP +F ++ +
Sbjct: 575 LNGGKFFSQIDLADAYLQIEVDDDSKKLLVINTHKGLLHYNRLPFGVKAAPGIFQQVMDT 634
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER-SVLWPVQT 223
+ L V YLDD+++ + + + + S + + LE+ S L P
Sbjct: 635 MLAGLDG----VSCYLDDIIVTGCSIEEHNQRVKKVIERIASFGFRMRLEKCSFLMP--E 688
Query: 224 CQYLGIMWN---------PTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVA-LHRSSP 270
Q+LG + N D K++P K + R L L Q V LHR P
Sbjct: 689 IQFLGFVINEQGRKPDPQKIADIKAMPAPKNAIEVRSFLGLIQFYGTFVRDLHRLRP 745
>gi|38567989|emb|CAE04032.2| OSJNBb0068N06.8 [Oryza sativa Japonica Group]
Length = 947
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + + LY T + FGL +AP F L
Sbjct: 482 DQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTQYGLYEFTVMLFGLTNAPAFFMNLM 541
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ +Q + R + L+ + L + W +
Sbjct: 542 NKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLVLGKLREHQLYAKLSKCEFW-LP 598
Query: 223 TCQYLGIMWNP---TLDSKSLPLEKQST------IQRYLLTLTQIQWWSVALHRSSPIFP 273
++LG + + +D ++L L+K+ ++ TL + + L I P
Sbjct: 599 EVKFLGHVISAKGVVVDPETL-LKKEEKFVWSPQCEKAFQTLKEKLVSLLVL-----ILP 652
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHSLGGVWSDHQ-EMWHINLK----EMFAVRSALERKL 327
+ F V DAS G G ++ ++ Q + N E+ AV AL+ +
Sbjct: 653 DTRKDFLVYCDASRQGLGCVLMQKGHVVAYASRQLRPYEGNYPTHDLELAAVVHALKIRR 712
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 713 QYLIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKAN 764
Query: 388 TWADSLSRQ 396
AD+LSR+
Sbjct: 765 VVADTLSRK 773
>gi|88595657|gb|ABD43135.1| reverse transcriptase [Orobanche ramosa]
Length = 143
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YQELNKETIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGLA+AP VF +L N + ++ L V++++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLANAPTVFMQLMNKV--FIEYLDKVVVIFIDDILIYSRSEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDILRTERLYAKFSKCEFW 142
>gi|50546072|ref|XP_500563.1| YALI0B06303p [Yarrowia lipolytica]
gi|49646429|emb|CAG82794.1| YALI0B06303p [Yarrowia lipolytica CLIB122]
Length = 2621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN-HSL 298
L + K + + L + LHR P P + ++TDAS+ GWGA++ + S+
Sbjct: 1871 LKITKTEATESAFMALKKAMVSPAVLHRYDPTLP----IVITTDASSLGWGAVMSHIVSV 1926
Query: 299 G------------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
G G+W+ + + E AV+ ALE+ + +I++DNQ +V
Sbjct: 1927 GPPAARRPVRFESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVF 1986
Query: 347 YIHKEGGTKSFKLLREVEALFD--LAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + + A+F A R++ G+ N AD LSR+K
Sbjct: 1987 LLQQ-------SRVELPNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREK 2032
>gi|189236286|ref|XP_001815236.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1463
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
+ +N + D F +DL+ Y+ +P+ + V D Y +PFGLA
Sbjct: 674 YRQLNSKTIKDRFPLPRFFTTLDLASGYYQIPMATESIPKTAFVTPDGHYEFVRMPFGLA 733
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVN 212
+AP VF + N + LR Y+DDLL+ ++D + R L+ ++
Sbjct: 734 NAPAVFQRAMNKVLGPLRF--QTAYCYIDDLLIPSKDFETGLNNLRTVFQLLRQFGLTLK 791
Query: 213 LERSVLWPVQTCQYLG 228
L + + Q +YLG
Sbjct: 792 LSKCCFFGSQI-EYLG 806
>gi|50554773|ref|XP_504795.1| YALI0E34980p [Yarrowia lipolytica]
gi|49650664|emb|CAG80402.1| YALI0E34980p [Yarrowia lipolytica CLIB122]
Length = 2621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN-HSL 298
L + K + + L + LHR P P + ++TDAS+ GWGA++ + S+
Sbjct: 1871 LKITKTEATESAFMALKKAMVSPAVLHRYDPTLP----IVITTDASSLGWGAVMSHIVSV 1926
Query: 299 G------------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
G G+W+ + + E AV+ ALE+ + +I++DNQ +V
Sbjct: 1927 GPPAARRPVRFESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVF 1986
Query: 347 YIHKEGGTKSFKLLREVEALFD--LAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + + A+F A R++ G+ N AD LSR+K
Sbjct: 1987 LLQQ-------SRVELPNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREK 2032
>gi|50552978|ref|XP_503899.1| YALI0E13376p [Yarrowia lipolytica]
gi|49649768|emb|CAG79492.1| YALI0E13376p [Yarrowia lipolytica CLIB122]
Length = 2621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN-HSL 298
L + K + + L + LHR P P + ++TDAS+ GWGA++ + S+
Sbjct: 1871 LKITKTEATESAFMALKKAMVSPAVLHRYDPTLP----IVITTDASSLGWGAVMSHIVSV 1926
Query: 299 G------------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
G G+W+ + + E AV+ ALE+ + +I++DNQ +V
Sbjct: 1927 GPPAARRPVRFESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVF 1986
Query: 347 YIHKEGGTKSFKLLREVEALFD--LAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + + A+F A R++ G+ N AD LSR+K
Sbjct: 1987 LLQQ-------SRVELPNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREK 2032
>gi|50546082|ref|XP_500568.1| YALI0B06446p [Yarrowia lipolytica]
gi|49646434|emb|CAG82799.1| YALI0B06446p [Yarrowia lipolytica CLIB122]
Length = 2621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN-HSL 298
L + K + + L + LHR P P + ++TDAS+ GWGA++ + S+
Sbjct: 1871 LKITKTEATESAFMALKKAMVSPAVLHRYDPTLP----IVITTDASSLGWGAVMSHIVSV 1926
Query: 299 G------------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
G G+W+ + + E AV+ ALE+ + +I++DNQ +V
Sbjct: 1927 GPPAARRPVRFESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVF 1986
Query: 347 YIHKEGGTKSFKLLREVEALFD--LAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + + A+F A R++ G+ N AD LSR+K
Sbjct: 1987 LLQQ-------SRVELPNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREK 2032
>gi|50543554|ref|XP_499943.1| YALI0A10395p [Yarrowia lipolytica]
gi|47115360|emb|CAC34421.2| pol protein [Yarrowia lipolytica]
gi|49645808|emb|CAG83870.1| YALI0A10395p [Yarrowia lipolytica CLIB122]
Length = 2621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN-HSL 298
L + K + + L + LHR P P + ++TDAS+ GWGA++ + S+
Sbjct: 1871 LKITKTEATESAFMALKKAMVSPAVLHRYDPTLP----IVITTDASSLGWGAVMSHIVSV 1926
Query: 299 G------------GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
G G+W+ + + E AV+ ALE+ + +I++DNQ +V
Sbjct: 1927 GPPAARRPVRFESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVF 1986
Query: 347 YIHKEGGTKSFKLLREVEALFD--LAVRHNITLMARYIPGKFNTWADSLSRQK 397
+ + + A+F A R++ G+ N AD LSR+K
Sbjct: 1987 LLQQ-------SRVELPNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREK 2032
>gi|238576153|ref|XP_002387934.1| hypothetical protein MPER_13114 [Moniliophthora perniciosa FA553]
gi|215448804|gb|EEB88864.1| hypothetical protein MPER_13114 [Moniliophthora perniciosa FA553]
Length = 628
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +L K + + + +P D L+ K+DL Y++V I + + R
Sbjct: 394 FRALNKLTIKDRYTIPLIGNLIDQLKNAKVYTKLDLRAGYYNVRIAEGEEWKTAFRTRYG 453
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +P GL++AP VF + N I + + ++ VIVYLDD+L+ + + +
Sbjct: 454 SFEYLVMPMGLSNAPSVFQRFMNDIFHDMVDIC--VIVYLDDILIYSDNEEEHERHVKEV 511
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
L+ + L++ + +YLG++ P
Sbjct: 512 FRRLEKNDLHLKLKKCEFH-TKEVEYLGVIVTPN 544
>gi|67625723|tpe|CAJ00250.1| TPA: pol polyprotein [Schistosoma mansoni]
Length = 1028
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 109 DFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANY 168
+ KIDL +AY ++P+ ++ L+ +PFGL +A Q F + +I N
Sbjct: 250 NIFTKIDLVRAYHNIPVADEDIPKTAITTPFGLFEFIRMPFGLRNAAQTFQR---FIDNL 306
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL-RWSVNLERS-VLWPVQTCQY 226
LR++ Y+DDLL+ + D L+S + L+ L +N+ +S ++ VQT ++
Sbjct: 307 LRDMPF-AQGYIDDLLIASPD---LQSHEQHVKTVLKRLDEHGINIHQSKCVFGVQTLEF 362
Query: 227 LGIMWNPTLDSKSL-PLEKQ-STIQRYLL--TLTQIQWW 261
LG T+ S+ + P++K+ TI++Y + +LTQ++ +
Sbjct: 363 LG----HTISSEGIKPIKKEVDTIKQYPIPSSLTQLRSF 397
>gi|32489221|emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa Japonica Group]
Length = 864
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 69 LTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFH 122
L LL+ +DG + + + +L + + N + +P D L+ KIDL Y
Sbjct: 127 LVLLVKKKDGSERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQ 185
Query: 123 VPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD 182
+ IR + R LY T + FGL +AP F L N I +L L V+V++DD
Sbjct: 186 LKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNQI--FLEYLDQFVVVFIDD 243
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
+L+ +++ R + L+ + + W
Sbjct: 244 ILIYSKNEEEHTEHLRLIMEKLRDHQLFAKFSKCEFW 280
>gi|108864166|gb|ABA92236.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 88 LSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
L+L + + N + +P D L+ KIDL Y + IR + R L
Sbjct: 847 LALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGL 906
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
Y T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R +
Sbjct: 907 YEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVL 964
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLG 228
L+ + L + W + ++LG
Sbjct: 965 GKLREHQLYAKLSKCEFW-LSEVKFLG 990
>gi|326674098|ref|XP_003200069.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Danio rerio]
Length = 1210
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 151/392 (38%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 471 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 530
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 531 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IQHQLYAKSSKCEFHQTC 586
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ----STI-------------QRYLLTLTQIQWWSV 263
+LG + +P +D + + Q TI +R++ + +
Sbjct: 587 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 646
Query: 264 ALHR------------------------SSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
A+ + S+PI P Q F V DASN+G GAI+
Sbjct: 647 AMVKANNARLKCNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 706
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 707 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 766
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR--QKELPDW 402
+ YI +S K L +A + L YIPG N AD+LSR E +
Sbjct: 767 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSRLSDDETSEL 819
Query: 403 HLLPEVTQHIFA---QWGVPEIDLFATANSAA 431
H P + + QW + + L A N+ +
Sbjct: 820 HDEPIIKDPLIVAPIQWDIEQEILQAAENNPS 851
>gi|48926660|gb|AAT47449.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1943
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 909 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 968
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 969 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRQV 1026
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1027 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1053
>gi|58531955|emb|CAE03064.2| OSJNBa0089E12.2 [Oryza sativa Japonica Group]
Length = 1764
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 883 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLCSGYHQLRIREEDIPKTAFTTRYG 942
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 943 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1000
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1001 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1027
>gi|116179214|ref|XP_001219456.1| hypothetical protein CHGG_00235 [Chaetomium globosum CBS 148.51]
gi|88184532|gb|EAQ92000.1| hypothetical protein CHGG_00235 [Chaetomium globosum CBS 148.51]
Length = 1967
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 137/354 (38%), Gaps = 69/354 (19%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + + K+D+ A+ V I H+ + + R LY PFGL AP F
Sbjct: 1013 DSICKARVFTKLDVIAAFNRVRIAEGHEWLTAFITRFGLYESLVTPFGLQGAPATFQHYI 1072
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + L L YLDD+L+ ++ Q R + L +++E+ V+
Sbjct: 1073 NDVLYDL--LDDCATAYLDDILIYSRSKDDHVKQVRKVLKRLIDAGLQIDIEKCEFHTVK 1130
Query: 223 TCQYLGIMWNP---TLDSKS-------LPLEKQSTIQRYL-------------------- 252
T +YLG++ P +D + LP + +QR+L
Sbjct: 1131 T-KYLGLIITPGGIEMDPEKVSAIESWLPPTTRRQLQRFLGFANFYRRFIKNFSGVAKPL 1189
Query: 253 --LTLTQIQW-WS----VALHRSSPIFPQAPQV---------FVSTDASN-SGWGAIVDN 295
LT W W+ A R F AP + V TDAS+ S G ++
Sbjct: 1190 HDLTKKTADWDWTDRCQAAFERLKHCFASAPALRIYDWEKPAVVETDASDWSAGGTLLQE 1249
Query: 296 HSLGGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQ--DKVVLIQSDNQTV 344
G + S + + I KE+ A+ ALE P L+ + I +D++ +
Sbjct: 1250 ADDGELHPVAYFSAKHSAQECNYDIYDKELLAIIKALEEWRPELEGTGQRFDIITDHKNL 1309
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKE 398
++ + S + +R E L R N ++ Y PG N D+LSR+ E
Sbjct: 1310 QTFATTK--QLSPRHMRWSEFL----SRFNFRIV--YRPGAANARPDALSRKPE 1355
>gi|13992686|gb|AAK51580.1|AC022352_16 Putative retroelement [Oryza sativa Japonica Group]
Length = 1023
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 88 LSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
++L + + N + +P D L+ KIDL Y + IR + + R L
Sbjct: 143 IALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREADIPKTAFTTRYGL 202
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
Y T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R +
Sbjct: 203 YEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVL 260
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLG 228
L+ + L + W + ++LG
Sbjct: 261 GKLREHQLYAKLSKCEFW-LSEVKFLG 286
>gi|88595701|gb|ABD43157.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N I ++ +L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKI--FIEHLDTCVVVFIDDILI 108
>gi|170111625|ref|XP_001887016.1| reverse transcriptase-RNase H-integrase [Laccaria bicolor S238N-H82]
gi|164638059|gb|EDR02339.1| reverse transcriptase-RNase H-integrase [Laccaria bicolor S238N-H82]
Length = 1324
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 139/368 (37%), Gaps = 88/368 (23%)
Query: 100 RVPDFLQ---RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ D L +G ID++ ++F + P H +V LY +P GL +AP
Sbjct: 655 RIDDILTDCAKGKIWATIDMTNSFFQTRMHPDHVHLTAVNTPLGLYEWLVMPMGLKNAPA 714
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+ + +L LG +YLDD+++ + RA + L R +N +++
Sbjct: 715 IHQRRVTAALRHL--LGKFCHIYLDDIVIWSNTVEEHEKNVRAVLQALCDARLYINPDKT 772
Query: 217 VL-----------------------------WPVQT----------------------CQ 225
L WP T +
Sbjct: 773 KLFCTEINFLGHHISARGIEADSGKVNRIMSWPTPTSATEVRSFLGLVRYISAFLPALAE 832
Query: 226 YLGIMWNPTLDS--KSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPI-FPQAPQ--VFV 280
+ G++ T + K+ PL T ++ + I+ + I F + P+ +FV
Sbjct: 833 HTGVLTELTTKASDKNFPL---CTAPKFQVVFDAIKAIVTGRECLTTIDFNKMPENKIFV 889
Query: 281 STDASNSGWGAIVDNHSLGGVWSDHQEM-------------WHINLKEMFAVRSALERKL 327
+TDAS+ G+++ S G W + + + ++ KE+ AV AL++
Sbjct: 890 TTDASDKRSGSVL---SFGPTWETARPVAFDSMSFKGTELNYPVHEKELLAVICALKKWR 946
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
L I +D +T+ +++ ++ ++ E + FD + YI G N
Sbjct: 947 VDLLGSPFFIYTDYKTLENFLSQKDLSRRQARWMEFLSQFDAKI--------VYIKGDDN 998
Query: 388 TWADSLSR 395
T AD+LSR
Sbjct: 999 TVADALSR 1006
>gi|147819718|emb|CAN73574.1| hypothetical protein VITISV_008296 [Vitis vinifera]
Length = 1027
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + + K+DL Y+ V + + + V R
Sbjct: 155 YRALNKVTIKNKYPIPLAAELFDRLSKASYFTKLDLRSGYWQVRVVAGDEGKTTCVTRYG 214
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIA-NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL +AP F L N + +YL V+VYLDD+++ ++ R
Sbjct: 215 SYEFLVMPFGLTNAPATFCNLMNDVLFDYLDAF---VVVYLDDIVVYSKTLTEHEKHLRL 271
Query: 200 AVATLQSLRWSVNLER 215
L+ R V E+
Sbjct: 272 XFXRLRENRLYVKPEK 287
>gi|54287622|gb|AAV31366.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1826
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 156/388 (40%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 968 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1027
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1028 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1085
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 1086 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVADWKQPKTVTQVRS 1144
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS + SSP I P
Sbjct: 1145 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDT 1204
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1205 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1264
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1265 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1316
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++L PE+ Q + A
Sbjct: 1317 ADALSRKGHCNTLNVLGIPPELNQQMEA 1344
>gi|326670195|ref|XP_003199158.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1208
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 136/354 (38%), Gaps = 77/354 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 492 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 551
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + QTC
Sbjct: 552 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRLIQNQLYAKISKCEFH--QTC 607
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 608 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 667
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A S+PI P Q F V DASN+G GAI+
Sbjct: 668 AMVKANNARLKWNPDATRAFTQLKTRFSSAPILRHPDPEQPFIVEIDASNTGIGAILSQK 727
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK----VVLIQSDN 341
SL + ++ + + +E+ A+++ALE L+ V+ N
Sbjct: 728 SLVTKKLHPCAFYSRKLNSAEQNYDVGNRELLAMKAALEEWRHWLEGAKHPFTVITDHKN 787
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 788 ---LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 831
>gi|301605052|ref|XP_002932173.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1278
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 143/357 (40%), Gaps = 72/357 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + R + +PFGL +AP F N
Sbjct: 415 LRSARVFTKLDLRGAYNLVRIRQGDEWKTAFRTRYGHFEYLVMPFGLCNAPATFQHFVND 474
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L + VIVYLDD+L+ + R + + L++ + LE+ + T
Sbjct: 475 I--FRDFLDLFVIVYLDDILIFSSSLEEHRCHVKQVFSRLRAHKLFAKLEKCEFERL-TI 531
Query: 225 QYLGIMWNP---TLDSKSLPL-------EKQSTIQR----------YLLTLTQIQWWSVA 264
++LG + +P ++DS+ + + +QR ++ ++I A
Sbjct: 532 EFLGFIISPEGMSMDSRKVSAVLDWPTPNSRKAVQRFVGFANFYRKFIKNFSKIISPITA 591
Query: 265 LHRSSPIF---PQAPQVF-----------------------VSTDASNSGWGAIVDNHS- 297
L S F P+A Q F + DAS GA++ +
Sbjct: 592 LTSSLKKFCWTPEAQQAFSDLKSRFTSAPILKHPDPSRPFVLEVDASEYAIGAVLSQRND 651
Query: 298 ----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSDNQTVV 345
S ++ + + +E+ A++SA + +L+ +L+ SD++ +
Sbjct: 652 VQSLLHPIAFFSKKLSSSEQNYDVGDRELLAIKSAFQEWRHLLEGAAHPILVFSDHKN-L 710
Query: 346 SYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKELPD 401
Y+ +S K LR +A + L R N + R PG N AD+LSR P+
Sbjct: 711 EYL------RSAKRLRPRQARWALFFSRFNFHVTFR--PGSKNGKADALSRLFPAPE 759
>gi|31432176|gb|AAP53838.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LQKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|88595561|gb|ABD43087.1| reverse transcriptase [Orobanche owerinii]
Length = 143
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + +R S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVRESDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNRV--FIEYLDKCVVVFIDDILI 108
>gi|326665462|ref|XP_003198047.1| PREDICTED: hypothetical protein LOC100332320 [Danio rerio]
Length = 1188
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R S KF R+ D L+R F+ +DL + Y+ VP+ S + + L
Sbjct: 852 RKLNSQSKFDAYPMPRIDDLLERIGQARFITTLDLCKGYWQVPLHHSSKALTAFRTPVGL 911
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
Y T LPFGL AP F +L + + L+ YLDD+++ + R +
Sbjct: 912 YQFTVLPFGLHGAPATFQRLMDQV---LQGCEEYAAAYLDDVVIYSHTWEDHLKHLRQTL 968
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+Q+ S+N+ + W YLG +
Sbjct: 969 EKIQAAGLSLNVVKCE-WGRGETNYLGYI 996
>gi|242022144|ref|XP_002431501.1| enzymatic polyprotein, putative [Pediculus humanus corporis]
gi|212516795|gb|EEB18763.1| enzymatic polyprotein, putative [Pediculus humanus corporis]
Length = 909
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGL 151
K+ + N + D L R + +DL+ + +P+ + + Y T +PFGL
Sbjct: 187 KYPIPNIEEILDQLGRSKYFTTLDLASGFHQIPLNDDDSKKTAFTTPFGHYEYTRMPFGL 246
Query: 152 ASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLG----NQDSVLLRS---QARAAVATL 204
+AP F +L N + + L+ G++ VYLDD+++ + V LR + R L
Sbjct: 247 KNAPATFQRLMNTVLSGLQ--GLQCFVYLDDIVIHAASIQEHEVKLRKIFDRLRLNNLKL 304
Query: 205 QSLRWSVNLERSVLWPVQTCQYLGIMWNP--TLDSKSLPLEKQSTIQRYLLTL 255
Q + L R V++ T +G+ NP S P+ K + R L L
Sbjct: 305 QPDKCEF-LRREVVYLGHTISDVGVRPNPDKVQGINSFPIPKSTKDIRSFLGL 356
>gi|77555663|gb|ABA98459.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LQKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|22138463|gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group]
gi|78708018|gb|ABB46993.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1499
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 618 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 677
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 678 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 735
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 736 LGKLREHQLYAKLSKCEFW-LSEVKFLG 762
>gi|242065034|ref|XP_002453806.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
gi|241933637|gb|EES06782.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
Length = 1414
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F K+DL Y V +RP + D LY +PFGL +AP F L
Sbjct: 548 DELHGARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALM 607
Query: 163 NWIAN-YLRNLGMRVIVYLDDLLL 185
N + YLR V+V+ DD+L+
Sbjct: 608 NDVLRAYLRRF---VLVFFDDILI 628
>gi|154275976|ref|XP_001538833.1| hypothetical protein HCAG_06438 [Ajellomyces capsulatus NAm1]
gi|150413906|gb|EDN09271.1| hypothetical protein HCAG_06438 [Ajellomyces capsulatus NAm1]
Length = 1242
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + + + +P D LQ KIDL AY+ + I + + R
Sbjct: 404 YRGLNKITIKDRYPIPRIEEMLDRLQNAVIFSKIDLRDAYYRIRIAEGDEWKTAFRTRYG 463
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +P GL +AP F N + L + + IVYLDD+L+ +Q++ R
Sbjct: 464 SYEFRVMPMGLCNAPATFQSYINEVLKGL--VDICCIVYLDDILIYSQNTEDHTKHLRLI 521
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
L+ R + + + ++LG + +PT
Sbjct: 522 FERLRKYRLYAKESKCTFFTTE-VEFLGYIVSPT 554
>gi|20177631|gb|AAM14686.1|AC097446_15 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430230|gb|AAP52176.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1859
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 1037 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1096
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T FGL +AP F L N + ++ L V+V++DD+L+ +Q R R
Sbjct: 1097 LYEFTVKSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHRHHLRLV 1154
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1155 LGKLRDHQLYAKLSKCEFW-LSEVKFLG 1181
>gi|21741860|emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa Japonica Group]
Length = 1470
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LQKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|147853301|emb|CAN78543.1| hypothetical protein VITISV_028081 [Vitis vinifera]
Length = 297
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRLGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|147859312|emb|CAN83956.1| hypothetical protein VITISV_029615 [Vitis vinifera]
Length = 319
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 89 SLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
+L K + N + +P D L R + K+DL Y+ V I + + V R Y
Sbjct: 7 ALNKVMVKNKYPIPLIADLFDQLGRARYFTKLDLRSDYYQVRIAEGDEPNTTCVTRYDSY 66
Query: 143 CMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
+PFGL +AP +F L N I + YL V+VYLDD+++
Sbjct: 67 EFLVMPFGLTNAPTMFCTLMNKIFHPYLDKF---VVVYLDDIVI 107
>gi|77555686|gb|ABA98482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 922 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 981
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 982 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQRHLRLV 1039
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1040 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1066
>gi|154280837|ref|XP_001541231.1| hypothetical protein HCAG_03328 [Ajellomyces capsulatus NAm1]
gi|150411410|gb|EDN06798.1| hypothetical protein HCAG_03328 [Ajellomyces capsulatus NAm1]
Length = 1201
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + + + +P D LQ KIDL AY+ + I + + R
Sbjct: 404 YRGLNKITIKDRYPIPRIEEMLDRLQNAIIFSKIDLRDAYYRIRIAEGDEWKTAFRTRYG 463
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +P GL +AP F N + L + + IVYLDD+L+ +Q++ R
Sbjct: 464 SYEFRVMPMGLCNAPATFQSYINEVLKGL--VDICCIVYLDDILIYSQNTEDHTKHLRLI 521
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
L+ R + + + ++LG + +PT
Sbjct: 522 FERLRKYRLYAKESKCTFFTTE-VEFLGYIVSPT 554
>gi|70720828|emb|CAI44646.2| OSJNBa0057M08.21 [Oryza sativa Japonica Group]
Length = 1202
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 822 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 881
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 882 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 939
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 940 LGKLREHQLYAKLSKCEFW-LSEVKFLG 966
>gi|154277048|ref|XP_001539369.1| hypothetical protein HCAG_06974 [Ajellomyces capsulatus NAm1]
gi|150414442|gb|EDN09807.1| hypothetical protein HCAG_06974 [Ajellomyces capsulatus NAm1]
Length = 1201
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + + + +P D LQ KIDL AY+ + I + + R
Sbjct: 404 YRGLNKITIKDRYPIPRIEEMLDRLQNAIIFSKIDLRDAYYRIRIAEGDEWKTAFRTRYG 463
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +P GL +AP F N + L + + IVYLDD+L+ +Q++ R
Sbjct: 464 SYEFRVMPMGLCNAPATFQSYINEVLKGL--VDICCIVYLDDILIYSQNTEDHTKHLRLI 521
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
L+ R + + + ++LG + +PT
Sbjct: 522 FERLRKYRLYAKESKCTFFTTE-VEFLGYIVSPT 554
>gi|291235377|ref|XP_002737621.1| PREDICTED: polyprotein-like, partial [Saccoglossus kowalevskii]
Length = 306
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN--- 163
+G L K D++ A+ +PI S + + + Y L FG S P+ F +L+
Sbjct: 13 KGAKLCKTDIADAFKLMPIHASLWHLYGIHWNEQFYFFVRLAFGCRSRPKFFDQLSTAVC 72
Query: 164 WIANYLRNLGMRVIVY-LDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNL-ERSVLWPV 221
WIA + N G++ I + LDD L N S ++ A+ TL R + L ++ + P
Sbjct: 73 WIAEH--NYGVQTIFHLLDDFLTVNSPSY--DAERTMAILTLLFHRLGIPLAKQKTVGPC 128
Query: 222 QTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTL 255
+YLGI + LP +K + I+ L T
Sbjct: 129 CKLEYLGIELDTNHMQARLPEDKLARIRELLQTF 162
>gi|284434667|gb|ADB85376.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 839
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDLS Y + IR ++ R
Sbjct: 474 YCSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLSSGYHQLKIRQEDIPKIAFSTRYE 533
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
LY T + FGL +AP F L N + ++ L VIV++DD+L+
Sbjct: 534 LYEYTVMSFGLTNAPAYFMNLMNKV--FMEYLDKFVIVFIDDILV 576
>gi|147800355|emb|CAN68703.1| hypothetical protein VITISV_010794 [Vitis vinifera]
Length = 121
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDESKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L + I + YL V+VYLDD+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMSKIFHPYLDKF---VVVYLDDIVI 107
>gi|50838927|gb|AAT81688.1| putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1278
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 746 YRALNEVTIKNKYPLPRIDDLFDQLKGASVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 805
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 806 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEKEHQQHLRLV 863
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 864 LGKLREHQLYAKLSKCEFW-LSEVKFLG 890
>gi|4539436|emb|CAB40024.1| putative reverse-transcriptase-like protein [Arabidopsis thaliana]
gi|7267755|emb|CAB78181.1| putative reverse-transcriptase-like protein [Arabidopsis thaliana]
Length = 1240
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 70 TLLLSSRDG-FQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFH 122
L + +DG F+ D + L + + N + +P D L+ KIDL+ Y
Sbjct: 531 VLFVKKKDGSFRLCID--YRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQ 588
Query: 123 VPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD 182
+PI + R + R + +PFGL +AP VF +L N + + L VI+++DD
Sbjct: 589 IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSV--FQEFLDEFVIIFIDD 646
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
+L+ ++ R + L+ + L + W
Sbjct: 647 ILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFW 683
>gi|62733085|gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549495|gb|ABA92292.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 914 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 973
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 974 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1031
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1032 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1058
>gi|327280226|ref|XP_003224853.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Anolis carolinensis]
Length = 827
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 158/422 (37%), Gaps = 100/422 (23%)
Query: 42 PNQDSFFEVARHTAILLLLCSGRRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRV 101
P F VA+ T L L+C R ++ T+ DR L L +
Sbjct: 110 PTAAPVFFVAKKTGDLRLVCDYRVLNKYTV-----------RDRYPLPL----------I 148
Query: 102 PDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVF 158
P+ L R K+DL AY V I+ + + Y +PFGL +AP VF
Sbjct: 149 PELLSRVQGASIFTKLDLRGAYNLVRIKEGDEWKTAFNTCFGAYENLVIPFGLCNAPAVF 208
Query: 159 AKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
+ N + L L V++YLDD+L+ ++D+ R ++ L++ + V
Sbjct: 209 QRFINDVFRDL--LDKFVVIYLDDILIFSKDAREHGEHVRQVLSRLRANGLFAKASKCVF 266
Query: 219 WPVQTCQYLGIMWNP---TLDSKSL-------PLEKQSTIQRYL---------------- 252
V ++LG + + +D + + L + +QR+L
Sbjct: 267 H-VSEVEFLGHVISGRELKMDPRKVDTVNTWQELTSKKDVQRFLGFANYYREFIPHFAHL 325
Query: 253 -LTLTQIQW------WSVALHRSSP------------IFPQAPQVF-VSTDASNSGWGAI 292
+ LTQ+ W++ ++ + P Q F V DASN GA+
Sbjct: 326 TVPLTQLLQKKRPFEWTMEAKKAFEQLKCSFQNGNILVHPNVNQPFIVEADASNYALGAV 385
Query: 293 VDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEG 352
+ VW KE+ A++ A E L+ + +Q VV H
Sbjct: 386 LSQKD-PSVWE----------KELLAIKVAFEVWRHWLEG------AKHQIVVLSDH--- 425
Query: 353 GTKSFKLLREVEALFDLAVR-----HNITLMARYIPGKFNTWADSLSRQKELPDWHLLPE 407
K+ + L+ L +R +++ GK N AD+LSR+ E + PE
Sbjct: 426 --KNLEHLQTARKLNQRQIRWALFFSRFDFRVQFVEGKQNLRADALSRKPEFKTAEIPPE 483
Query: 408 VT 409
T
Sbjct: 484 QT 485
>gi|301611270|ref|XP_002935168.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1225
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 142/357 (39%), Gaps = 76/357 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + R Y +PFGL +AP F N
Sbjct: 359 LRSARVFTKLDLRGAYNLVRIRQGDEWKTAFRTRYGHYEYLVMPFGLCNAPATFQHFAND 418
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I L + VI+YLDD+L+ + R R + L++ + LE+ + +
Sbjct: 419 I------LDLFVIIYLDDILIFSSSLEEHRHHVRQVFSRLRAYKLFAKLEK-CEFEKSSI 471
Query: 225 QYLGIMWNP---TLDSKSLPL-------EKQSTIQRYL---------------------- 252
++LG + + ++DS+ + + +QR++
Sbjct: 472 EFLGFIISSDGISMDSRKVSAVLDWPVPNSRKAVQRFVGFANFYRKFIKNFSKIIAPITA 531
Query: 253 --LTLTQIQWWSVALH---------RSSPIF--PQAPQVFV-STDASNSGWGAIVDNHS- 297
++ ++ W S A S+PI P + FV DAS GA++ +
Sbjct: 532 LTSSVKRLCWTSEAQRAFLDLKNRFTSAPILKHPDPTRPFVLEVDASEYAIGAVLSQRND 591
Query: 298 ----------LGGVWSDHQEMWHINLKEMFAVRSALE--RKLPVLQDKVVLIQSDNQTVV 345
S ++ + + +E+ A++SA + R L +L+ SD++ +
Sbjct: 592 VQSLLHPIAFFSKKLSSSEQNYDVGDRELLAIKSAFQEWRHLLEWASHPILVFSDHKN-L 650
Query: 346 SYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKELPD 401
Y+ +S K LR +A + L R N + R PG N AD+LSR P+
Sbjct: 651 EYL------RSAKRLRPRQARWALFFSRFNFHVTFR--PGSKNGKADALSRLFSAPE 699
>gi|19881659|gb|AAM01060.1|AC091735_33 Putative retroelement [Oryza sativa Japonica Group]
gi|21672044|gb|AAM74406.1|AC120497_6 Putative retroelement [Oryza sativa Japonica Group]
gi|31430958|gb|AAP52803.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 986
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
L + +DG + + SL + + N + +P D L+ KIDL Y +
Sbjct: 99 LFVKKKDGSMRMS-VDYCSLNEVTIKNKYPLPRIDDLFDLLKGAKVFSKIDLRSGYHQLK 157
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + LY T + FGL +AP F L N + ++ L V+V++DD+L
Sbjct: 158 IRTGDILKTAFSTHYGLYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDIL 215
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ ++D R + L+ + + W ++ +LG
Sbjct: 216 IYSKDEEEHAKHLRLVLEKLRKHKLYAKFSKCEFW-LKEVAFLG 258
>gi|20177629|gb|AAM14684.1|AC097446_13 Putative polyprotein [Oryza sativa Japonica Group]
gi|22725924|gb|AAN04934.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430228|gb|AAP52174.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1569
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 697 YRSLNEVTIKNKYPLPWIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYG 756
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 757 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEDEHAEHLRLV 814
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 815 LEKLRKHKLYAKFSKCEFW-LKEVAFLG 841
>gi|32490114|emb|CAE04950.1| OSJNBa0070D17.1 [Oryza sativa Japonica Group]
gi|38347250|emb|CAD39363.2| OSJNBa0059H15.14 [Oryza sativa Japonica Group]
Length = 1030
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 179 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 238
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 239 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 296
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 297 LGKLREHQLYAKLSKCEFW-LSEVKFLG 323
>gi|116310820|emb|CAH67609.1| OSIGBa0145G11.8 [Oryza sativa Indica Group]
Length = 1470
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LQKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|108708202|gb|ABF95997.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1764
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR ++ R
Sbjct: 883 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTALTTRYG 942
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 943 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1000
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1001 LGKLREHQLYAKLSKCDFW-LSEVKFLG 1027
>gi|52353726|gb|AAU44292.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1816
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 935 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 994
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 995 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEENHQHHLRLV 1052
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1053 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1079
>gi|52353559|gb|AAU44125.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 593 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 652
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 653 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 710
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 711 LGKLREHQLYAKLSKCEFW-LSEVKFLG 737
>gi|116317857|emb|CAH65888.1| OSIGBa0096I22.1 [Oryza sativa Indica Group]
Length = 1635
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 861 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 920
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 921 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 978
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 979 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1005
>gi|326681142|ref|XP_003201727.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Danio rerio]
Length = 1317
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + V Y +P+GL +AP VF N+
Sbjct: 493 LRSAKIFTKLDLRSAYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVF---QNF 549
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + VIVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 550 IHEVLREFLHLFVIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKAEKCSFH-LPS 608
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 609 VQFLGYV 615
>gi|77552428|gb|ABA95225.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 914 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 973
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 974 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1031
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1032 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1058
>gi|20143556|gb|AAM12313.1|AC091680_14 putative polyprotein [Oryza sativa Japonica Group]
Length = 1453
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 605 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 664
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 665 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLV 722
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 723 LGKLREHQLYAKLSKCEFW-LSEVKFLG 749
>gi|108708196|gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1748
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 867 YRALNEVTIKNKYPLPRIDDLFDQLKGATIFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 926
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 927 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 984
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 985 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1011
>gi|108708199|gb|ABF95994.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1534
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 653 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 712
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 713 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 770
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 771 LGKLREHQLYAKLSKCEFW-LSEVKFLG 797
>gi|54287528|gb|AAV31272.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287632|gb|AAV31376.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1784
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 156/388 (40%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 903 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 962
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 963 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1020
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 1021 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRC 1079
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS+ + SSP I P
Sbjct: 1080 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSLQCEKAFQTLKEKLVSSPVLILPDT 1139
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1140 RKDFLVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1199
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1200 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYYPGKANVV 1251
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++ PE+ Q + A
Sbjct: 1252 ADALSRKGHCNTLNVRGIPPELNQQMEA 1279
>gi|53981932|gb|AAV25050.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1804
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 923 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 982
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 983 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1040
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1041 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1067
>gi|57834136|emb|CAE05577.3| OSJNBa0032N05.5 [Oryza sativa Japonica Group]
Length = 1790
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 909 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 968
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 969 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1026
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ----RYLLTLT 256
+ L+ + L + W + ++LG + + +K + ++ ++ I + T+T
Sbjct: 1027 LGKLREHQLYAKLSKCEFW-LSEVKFLGHV----ISAKGVAVDPETVIAVTDWKQPKTVT 1081
Query: 257 QIQ 259
QI+
Sbjct: 1082 QIR 1084
>gi|268557352|ref|XP_002636665.1| Hypothetical protein CBG23377 [Caenorhabditis briggsae]
Length = 287
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 10/183 (5%)
Query: 276 PQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRS--ALERKLPVLQDK 333
P ++ TDAS G GA++ N VW + KE A+R A+E ++++
Sbjct: 89 PTWYLYTDASAEGMGAVLKNSRKETVWQASKIGDVSFRKESSALRELRAVEFATRTMREQ 148
Query: 334 V---VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWA 390
+ + I SD+Q VS + K G+ +L + E ++D +V +IP + NT A
Sbjct: 149 IRGAISIHSDSQAAVSVLKK--GSMKLELHKVAERVWD-SVEQIRPARFLWIPREENTEA 205
Query: 391 DSLSRQKELPDWHLLPEVTQHIFAQWGVPEIDLFATANSAAFLVQGGPLKFPDGINPIST 450
D+ SR+ + DW + + +W + DLFA+ +A V ++P+ + +
Sbjct: 206 DATSREFDTDDWGVQDWAFEWAQKRWSRVKCDLFASERNAKHSVYFS--RYPEPTSSGTD 263
Query: 451 SYD 453
++D
Sbjct: 264 AFD 266
>gi|340383045|ref|XP_003390028.1| PREDICTED: uncharacterized protein K02A2.6-like [Amphimedon
queenslandica]
Length = 1323
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
FL + + L N + + G+ K+DL+ AY + + + +++ LY T
Sbjct: 488 FLDIDVYPLPNVDEMFAVMAGGEKFTKLDLTNAYQQMELDNLSRDLVTINTHQGLYRYTR 547
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
LPFG+ASAP VF + + I L +V+ Y+DD+LL D
Sbjct: 548 LPFGVASAPAVFQRTMDTILQGLD----KVVCYIDDILLTGVD 586
>gi|108709816|gb|ABF97611.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1343
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 746 YRALNEVTIKNKYPLPRIDDLFDQLKGASVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 805
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 806 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEKEHQQHLRLV 863
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 864 LGKLREHQLYAKLSKCEFW-LSEVKFLG 890
>gi|427798379|gb|JAA64641.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 636
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L +F +DL Y+ VP+ + ++ + + D LY +PFGL +AP F +L
Sbjct: 184 DTLHGAEFFSSLDLRSGYWQVPMADADRQKTAFITPDGLYEFNVMPFGLCNAPATFERLM 243
Query: 163 NWIANYLRNLG-MRVIVYLDDLLLGNQD 189
+ N LR L + YLDD+++ + D
Sbjct: 244 D---NTLRGLKWTMCLCYLDDVVVFSHD 268
>gi|270000994|gb|EEZ97441.1| hypothetical protein TcasGA2_TC011272 [Tribolium castaneum]
Length = 1746
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 83/369 (22%), Positives = 145/369 (39%), Gaps = 77/369 (20%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGL 151
++ L N + D L R + IDL+ + + + P+ + + + Y +PFGL
Sbjct: 431 RYPLPNINDILDKLGRSQYFSTIDLASGFHQIEVDPNDVQKTAFTVENGHYEFVRMPFGL 490
Query: 152 ASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR-- 208
+AP F ++ + N LR + IVYLDD+++ S L+ Q + A LR
Sbjct: 491 KNAPSTFQRVMD---NVLRGIVNNCCIVYLDDIIVF---STSLQEQIQKLTAVFDRLRKF 544
Query: 209 -WSVNLERSVLWPVQTCQYLGIMWNP------------TLDSKSLPLEKQ--------ST 247
+ + L++S + YLG + P LD KQ
Sbjct: 545 NFKIQLDKSEFLK-KEVNYLGHVITPEGIKPNPDKIKAILDYSIPTTPKQLKGFLGLIGY 603
Query: 248 IQRYLLTLTQI-QWWSVALHRSSPIFP----------------------QAP----QVFV 280
++++ +I + ++ L + I P Q P Q +
Sbjct: 604 YRKFIKNFAKITKPLTIRLKKDHKIDPNETDYKNCFEFCKNLLTNDSILQYPDFDKQFIL 663
Query: 281 STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
+TDASN GA++ ++G ++H+ + KE+ A+ A + P L
Sbjct: 664 TTDASNYAIGAVLSQGTIGSDLPVAFASRTLNEHEINYSTIEKELLAIVWATKYFRPYLY 723
Query: 332 DKVVLIQSDNQTVV-SYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWA 390
+ I +D+Q + + KE +K + +E FD + Y GK N+ A
Sbjct: 724 GRKFKIVTDHQPLKWLFSLKEPNSKLVRWRLRLEE-FDYEI--------HYKKGKLNSNA 774
Query: 391 DSLSRQKEL 399
D+LSR L
Sbjct: 775 DALSRPPNL 783
>gi|110288765|gb|ABG65969.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1502
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 621 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 680
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 681 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 738
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 739 LGKLREHQLYAKLSKCEFW-LSEVKFLG 765
>gi|38347259|emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group]
Length = 1785
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 904 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 963
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 964 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1021
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1022 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1048
>gi|77556493|gb|ABA99289.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 924 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 983
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 984 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1041
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1042 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1068
>gi|77555397|gb|ABA98193.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1759
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 910 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 969
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 970 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1027
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1028 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1054
>gi|326675746|ref|XP_003200420.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1391
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 144/368 (39%), Gaps = 76/368 (20%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY + IR + + + LPFGL +AP VF L
Sbjct: 489 ELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTGHFEYRVLPFGLTNAPAVFQALV 548
Query: 163 NWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ R V VYLDD+L+ + + R + L + V E+ V V
Sbjct: 549 N---DVLRDMVNRFVFVYLDDILIFSPSLKVHTQHVRQVLQRLLENQLYVKAEKCVFH-V 604
Query: 222 QTCQYLGIMWN-----------------PTLDSKSLPLEK----QSTIQRYLLTLTQIQW 260
++ +LG + + PT DS+ L++ + +R++ QI
Sbjct: 605 KSVSFLGFIISAGEIQADPCKVKAVAEWPTPDSRKA-LQRFLGFANFYRRFIRNFGQIAA 663
Query: 261 -------------WSV----ALHRSSPIFPQAP---------QVFVSTDASNSGWGAIVD 294
W V A + F AP Q V DAS+ G GA++
Sbjct: 664 PLTALTSPKVPFKWEVDAQEAFDKLKSRFVSAPVLSIPDPERQFIVEVDASDVGVGAVLS 723
Query: 295 NHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQSDN 341
S G V + + + I +E+ AVR AL L+ L+ +D+
Sbjct: 724 QRSRLDGKVHPCAFFSHRLNPSERNYDIGNRELLAVRLALGEWHHWLEGAAQPFLVWTDH 783
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKELP 400
+ + YI +S + L +A + L R N TL Y PG N D+LSR E P
Sbjct: 784 KN-LEYI------RSARRLSSRQARWALFFGRFNFTLS--YRPGSKNIKPDALSRLFEAP 834
Query: 401 DWHLLPEV 408
P+
Sbjct: 835 GEREPPDT 842
>gi|116317844|emb|CAH65877.1| OSIGBa0160I04.3 [Oryza sativa Indica Group]
Length = 1786
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 905 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 964
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 965 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1022
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1023 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1049
>gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa Japonica Group]
Length = 1092
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 283 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 342
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 343 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQQHLRLV 400
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 401 LGKLREHQLYAKLSKCEFW-LSEVKFLG 427
>gi|77555643|gb|ABA98439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 896 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 955
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 956 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1013
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1014 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1040
>gi|158935576|emb|CAP16621.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 365
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + + K+DL Y+ V I + + V R
Sbjct: 10 YRALNKVTVKNKYHIPLIADLFDQLGKAKYFSKLDLRSGYWQVRIAEGDEAKTTCVTRYG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ +PFGL +AP F L N + + L V+VYLDD+++ +Q
Sbjct: 70 AFEFLVMPFGLTNAPATFCTLMNQL--FKEYLDKFVVVYLDDIVVYSQ 115
>gi|77554515|gb|ABA97311.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 621 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 680
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 681 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 738
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 739 LGKLREHQLYAKLSKCEFW-LSEVKFLG 765
>gi|50300503|gb|AAT73646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1764
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 883 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 942
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 943 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1000
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1001 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1027
>gi|348542409|ref|XP_003458677.1| PREDICTED: uncharacterized protein K02A2.6-like [Oreochromis
niloticus]
Length = 858
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
KIDL+QAY + + + L++ L+ LPFG+ SAP +F + + I + L
Sbjct: 149 KIDLNQAYLQMHVEEQSRDMLTINTHKGLFTYCRLPFGITSAPALFQQAIDQILSGL--- 205
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR 208
RV YLDD+L D R ATLQ L+
Sbjct: 206 -PRVQCYLDDILCTGADD---EEHLRNLDATLQRLK 237
>gi|326676574|ref|XP_003200615.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1192
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 137/351 (39%), Gaps = 71/351 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 501 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 560
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 561 I--FRDMLNKWVIVYIDDILIYSNSLSEHIQHVRAVLKRL--IENQLYAKSSKCEFHQTC 616
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 617 ILFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 676
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 677 TMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 736
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 737 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 796
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 797 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 840
>gi|88595581|gb|ABD43097.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + +R S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGYTVFSKIDLRSGYYQLRVRDSDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP +F +L N + ++ L V+V++DD+L+ ++D AR
Sbjct: 66 HYEFVVMPFGLTNAPAMFMQLMNKV--FIEYLDKCVVVFIDDILIYSKDE---EEHARHL 120
Query: 201 VATLQSLR 208
L+ LR
Sbjct: 121 HIVLEILR 128
>gi|328868140|gb|EGG16520.1| hypothetical protein DFA_09058 [Dictyostelium fasciculatum]
Length = 1302
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 87 FLSLKKFHLINHFRVPDFLQ------RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +L K + + F +P Q + KIDL + + I+ H +
Sbjct: 433 FRALNKQTVADRFPLPRIDQLIEKIAKAKIFSKIDLKDGFNQIRIKDEHTHKTAFSTPSG 492
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y T +PFGL +AP F + N A + L VI+Y+DD+L+ +++ +
Sbjct: 493 HYEYTVIPFGLRNAPSAFVRAIN--AAFADILDTFVIIYIDDILIFSENENDHYEHIKQV 550
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP 233
+ L+S + N +S V+ ++LG + P
Sbjct: 551 LDRLRSNKLFANKAKSSFL-VKEVEFLGHLITP 582
>gi|242117516|dbj|BAH79999.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1374
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 625 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 684
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 685 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 742
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 743 LGKLREHQLYAKLSKCEFW-LSEVKFLG 769
>gi|326673785|ref|XP_003199991.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + V Y +P+GL +AP VF N+
Sbjct: 562 LRSAKIFTKLDLRSAYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVFQ---NF 618
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + VIVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 619 IHEVLREFLHLFVIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKAEKCSFH-LPS 677
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 678 VQFLGYV 684
>gi|78708035|gb|ABB47010.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 915 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 974
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 975 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1032
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1033 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1059
>gi|77554634|gb|ABA97430.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1226
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 447 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTTFSTRYG 506
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 507 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHVEHLRLV 564
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 565 LEKLRKHKLYAKFSKCEFW-LKEVAFLG 591
>gi|13992680|gb|AAK51574.1|AC022352_10 Putative retroelement [Oryza sativa Japonica Group]
gi|31431004|gb|AAP52842.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1810
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 929 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 988
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 989 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1046
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1047 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1073
>gi|38344459|emb|CAE04930.2| OSJNBa0017P10.7 [Oryza sativa Japonica Group]
gi|38345444|emb|CAE03296.2| OSJNBb0046P18.12 [Oryza sativa Japonica Group]
Length = 1469
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 588 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 647
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 648 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 705
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 706 LGKLREHQLYAKLSKCEFW-LSEVKFLG 732
>gi|301605640|ref|XP_002932454.1| PREDICTED: hypothetical protein LOC100489243 [Xenopus (Silurana)
tropicalis]
Length = 1152
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 30/210 (14%)
Query: 84 DRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
DR + + R+ G + K D+ A+ +P+ L + Y
Sbjct: 745 DRELVRVSYTSFDEAVRLAREAGPGALMAKADVESAFRLLPVHRESLHLLGCFFHGKYYV 804
Query: 144 MTCLPFGLASAP---QVFAKLTNWIANYLRNLGMRVIV-YLDDLLL---GNQD--SVLLR 194
CLP G + + + F+ W+ R G+ I+ YLDD L GN +VLL+
Sbjct: 805 DRCLPMGCSISCAYFEAFSTFIEWVVR--RRAGVNTIIHYLDDFLCVAPGNSGLCAVLLQ 862
Query: 195 SQARAAVATLQSL--RWSVNLERSVLWPVQTC-QYLGIMWNPTLDSKSLPLEK------- 244
TLQ + ++ V L R TC ++LGI N L LPL+K
Sbjct: 863 --------TLQEVADQFGVPLAREKTEGPATCLKFLGIEINTVLQECRLPLDKVQVLKGE 914
Query: 245 -QSTIQRYLLTLTQIQWWSVALHRSSPIFP 273
+ T++ +TL Q+Q L+ + I P
Sbjct: 915 VEYTLKAKKVTLKQLQSLLGKLNFACRIIP 944
>gi|108708200|gb|ABF95995.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 923 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 982
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 983 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1040
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1041 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1067
>gi|50300512|gb|AAT73655.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1747
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 156/388 (40%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 889 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 948
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 949 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1006
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTI----- 248
+ L+ + L + W + ++L G+ +P + ++ T+
Sbjct: 1007 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVTAVADWKQPKTVTQVRS 1065
Query: 249 --------QRYLLTLTQIQW-------------WSVALHR----------SSP--IFPQA 275
+R++ ++I WS + SSP I P
Sbjct: 1066 FLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDT 1125
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1126 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1185
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1186 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1237
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++L PE+ Q + A
Sbjct: 1238 ADALSRKGHCNTLNVLGIPPELNQQMEA 1265
>gi|78708033|gb|ABB47008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 923 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 982
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 983 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1040
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1041 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1067
>gi|326674339|ref|XP_003200115.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + V Y +P+GL +AP VF N+
Sbjct: 562 LRSAKIFTKLDLRSAYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVFQ---NF 618
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + VIVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 619 IHEVLREFLHLFVIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKAEKCSFH-LPS 677
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 678 VQFLGYV 684
>gi|19881755|gb|AAM01156.1|AC113336_8 Putative retroelement [Oryza sativa Japonica Group]
gi|31430462|gb|AAP52371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 903 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 962
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 963 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1020
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1021 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1047
>gi|328875770|gb|EGG24134.1| hypothetical protein DFA_06276 [Dictyostelium fasciculatum]
Length = 1320
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 87 FLSLKKFHLINHFRVPDFLQ------RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +L K + + F +P Q + KIDL + + I+ H +
Sbjct: 433 FRALNKQTVADRFPLPRIDQLIEKIAKAKIFSKIDLKDGFNQIRIKDEHTHKTAFSTPSG 492
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y T +PFGL +AP F + N A + L VI+Y+DD+L+ +++ +
Sbjct: 493 HYEYTVIPFGLRNAPSAFVRAIN--AAFADILDTFVIIYIDDILIFSENENDHYEHIKQV 550
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP 233
+ L+S + N +S V+ ++LG + P
Sbjct: 551 LDRLRSNKLFANKAKSSFL-VKEVEFLGHLITP 582
>gi|326678742|ref|XP_003201157.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1334
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + V Y +P+GL +AP VF N+
Sbjct: 490 LRSAKIFTKLDLRSAYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVF---QNF 546
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + VIVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 547 IHEVLREFLHLFVIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKAEKCSFH-LPS 605
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 606 VQFLGYV 612
>gi|147845833|emb|CAN82188.1| hypothetical protein VITISV_031113 [Vitis vinifera]
Length = 329
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L R + K+DL Y+ V I + + V R Y +PFGL +AP F L
Sbjct: 27 DQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPTTFCTLM 86
Query: 163 NWIAN-YLRNLGMRVIVYLDDLLL 185
N I + YL V+VYLDD+++
Sbjct: 87 NKIFHPYLDKF---VVVYLDDIVI 107
>gi|270015797|gb|EFA12245.1| hypothetical protein TcasGA2_TC001782 [Tribolium castaneum]
Length = 351
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ + +DL + HV + PS ++ S V Y +PFGL +AP V +
Sbjct: 187 DMLKNKRYFSCLDLKNGFHHVRMSPSSIKYTSFVTPLGQYEFLKMPFGLTNAPHVLKRYI 246
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQD 189
+ + + L N +++VYLDD+++ +D
Sbjct: 247 HEVFSDLIN-SHKILVYLDDIMIATED 272
>gi|21740445|emb|CAD41630.1| OSJNBa0091D06.6 [Oryza sativa Japonica Group]
Length = 1799
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 918 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 977
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 978 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1035
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1036 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1062
>gi|77554522|gb|ABA97318.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 541 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 600
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + +++ L V+V++DD+L+ +Q + R
Sbjct: 601 LYEFTVMSFGLTNAPAFFMNLMNKV--FMKYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 658
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 659 LGKLRKHQLYAKLSKYEFW-LSEVKFLG 685
>gi|326664005|ref|XP_003197708.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1295
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 138/351 (39%), Gaps = 71/351 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 414 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 473
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L VIVY+DD+L+ + RA + L ++ +N + S QTC
Sbjct: 474 V--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLERL--IQNQLNAKISKCEFHQTC 529
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 530 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 589
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ SSPI P Q F V DAS++G GAI+
Sbjct: 590 AMVKANNARLKWNPDAVRAFTQLKTRFSSSPILRHPDPEQPFIVEIDASSTGIGAILSQR 649
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K +
Sbjct: 650 SLITKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFTVITDHKN 709
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 710 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 753
>gi|326672934|ref|XP_003199760.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + + V Y +P+GL +AP VF N+
Sbjct: 562 LRSAKIFTKLDLRSAYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVFQ---NF 618
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + VIVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 619 IHEVLREFLHLFVIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKAEKCSFH-LPS 677
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 678 VQFLGYV 684
>gi|116310099|emb|CAH67119.1| H0502G05.10 [Oryza sativa Indica Group]
Length = 1826
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 945 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1004
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1005 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1062
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1063 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1089
>gi|108707255|gb|ABF95050.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1790
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 909 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 968
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 969 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1026
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1027 LGKLRKHQLYAKLSKCEFW-LSEVKFLG 1053
>gi|38344635|emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa Japonica Group]
Length = 1804
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 923 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 982
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 983 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1040
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1041 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1067
>gi|90265240|emb|CAH67693.1| H0624F09.1 [Oryza sativa Indica Group]
gi|90399167|emb|CAJ86096.1| H0818H01.18 [Oryza sativa Indica Group]
Length = 1805
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 924 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 983
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 984 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1041
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1042 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1068
>gi|110288767|gb|AAP52585.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1797
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 916 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 975
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 976 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1033
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1034 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1060
>gi|108708180|gb|ABF95975.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 320
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 169 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLCSGYHQLRIREEDIPKTAFTMRYG 228
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 229 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 286
Query: 201 VATLQSLRWSVNLERSVLWPVQT 223
+ L+ + L + W V T
Sbjct: 287 LGKLREHQLYAKLSKCEFWFVTT 309
>gi|22857586|gb|AAN09860.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 939 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 998
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 999 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1056
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1057 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1083
>gi|50300545|gb|AAT73686.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1498
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 617 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 676
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 677 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQTEEDHQHHLRLV 734
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 735 LGKLREHQLYAKLSKCEFW-LSEVKFLG 761
>gi|22725933|gb|AAN04943.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431094|gb|AAP52925.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 922 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 981
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 982 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1039
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1040 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1066
>gi|62732761|gb|AAX94880.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549451|gb|ABA92248.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 968 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIRKEDIPKTAFTTRYG 1027
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1028 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1085
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1086 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1112
>gi|301623719|ref|XP_002941161.1| PREDICTED: hypothetical protein LOC100497966 [Xenopus (Silurana)
tropicalis]
Length = 855
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQRGD---FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R + KF RV + ++R D +L +DL++ Y VP+ ++ + + L
Sbjct: 535 RKLNEVSKFDAFPMPRVDELIERLDPARYLTTLDLTKGYRQVPLNEQAKQKTAFSTPEDL 594
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD--SVLLRSQA-- 197
+ LPFGL AP F +L +W+ R YLDD+++ + D S L + Q
Sbjct: 595 FQYNVLPFGLHGAPATFQRLMDWVLKPHRPYAS---AYLDDVVIFSTDWESHLAKVQVVL 651
Query: 198 ---RAAVATLQSLRWSVNLERSVLWP 220
R A T + ++ +E + P
Sbjct: 652 DSIREAGLTANPKKCAIGMEEAKFVP 677
>gi|110288804|gb|ABG65986.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1840
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 959 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1018
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1019 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1076
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1077 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1103
>gi|38568042|emb|CAE05353.3| OSJNBa0065J03.12 [Oryza sativa Japonica Group]
Length = 1599
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 845 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 904
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 905 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 962
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 963 LGKLREHQLYAKLSKCEFW-LSEVKFLG 989
>gi|22725911|gb|AAN04921.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31430214|gb|AAP52160.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 905 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 964
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 965 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1022
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1023 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1049
>gi|406693857|gb|EKC97200.1| retrotransposon nucleocapsid protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 1790
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL AY V IR + + + LY +PFGL +AP F +L
Sbjct: 911 DRLSSAKVFTKIDLRGAYHLVRIRAGDEWKTAFRTQFGLYEYLVMPFGLCNAPATFQRLV 970
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSV 191
N + + L L V+VYLDD+L+ ++D+
Sbjct: 971 NHVFHDL--LESCVVVYLDDILIFSEDNA 997
>gi|340386274|ref|XP_003391633.1| PREDICTED: uncharacterized protein K02A2.6-like, partial
[Amphimedon queenslandica]
Length = 761
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DL+QAY +P+ S +++++V L+ +PFG+ SAP +F +
Sbjct: 31 LAGGVAFTKLDLAQAYLQLPLSDSSKQYVTVNTHKGLFEFNRVPFGITSAPAIFQRCM-- 88
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQ 188
+ L VIVY+DD+L+ +
Sbjct: 89 --DTLFQGSNGVIVYIDDILVTGK 110
>gi|328866329|gb|EGG14714.1| hypothetical protein DFA_10972 [Dictyostelium fasciculatum]
Length = 1344
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 87 FLSLKKFHLINHFRVPDFLQ------RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +L K + + F +P Q + KIDL + + I+ H +
Sbjct: 475 FRALNKQTVADRFPLPRIDQLIEKIAKAKIFSKIDLKDGFNQIRIKDEHTHKTAFSTPSG 534
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y T +PFGL +AP F + N A + L VI+Y+DD+L+ +++ +
Sbjct: 535 HYEYTVIPFGLRNAPSAFVRAIN--AAFADILDTFVIIYIDDILIFSENENDHYEHIKQV 592
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP 233
+ L+S + N +S V+ ++LG + P
Sbjct: 593 LDRLRSNKLFANKAKSSFL-VKEVEFLGHLITP 624
>gi|327272201|ref|XP_003220874.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Anolis carolinensis]
Length = 738
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 152/389 (39%), Gaps = 74/389 (19%)
Query: 42 PNQDSFFEVARHTAILLLLCSGRRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRV 101
P F VA+ T L L+C R ++ T+ DR L L +
Sbjct: 55 PTAAPVFFVAKKTGELRLVCDYRILNKYTI-----------QDRYPLPL----------I 93
Query: 102 PDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC--MTCLPFGLASAPQ 156
+ L R K+DL AY + IR + + C +PFGL +AP
Sbjct: 94 SELLSRVQGAKVFTKLDLRGAYNLIRIREGDE--WKTAFNTCFGCHEFRVMPFGLCNAPA 151
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
VF + N + L + +++YLDD+L+ ++D R + + L++ +
Sbjct: 152 VFQRFMNDVFRDL--IDQFLVIYLDDILIFSKDEKEHRQHVKQVLHRLRANGLFAKASKC 209
Query: 217 VLWPVQTCQYLG-------IMWNP-TLDSKS--LPLEKQSTIQRYLLTLTQIQWWSVALH 266
V + V ++LG + +P +D+ + L+ + +QR+L + + H
Sbjct: 210 V-FHVPEVEFLGHVVSGRELKMDPHKVDAVNSWQELKTKKDVQRFLGFANYYREFIPNFH 268
Query: 267 RSSPIFPQAPQVF-VSTDASNSGWGAIVDNHSLGGV----------WSDHQEMWHINLKE 315
P + F V DAS+ GA++ G + ++ + I KE
Sbjct: 269 ------PDVDKPFVVEADASSYALGAVLSQKDSSGTLRPCGFYSRQLTPFEQNYTIWEKE 322
Query: 316 MFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVR--- 372
+ A++ A E L+ + +Q VV H K+ + L+ + L +R
Sbjct: 323 LLAIKVAFEVWRHWLEG------ARHQIVVRSDH-----KNLEHLQTAKKLNQRQIRWAL 371
Query: 373 --HNITLMARYIPGKFNTWADSLSRQKEL 399
+++ GK N AD+LSR+ E
Sbjct: 372 FFSRFNFKVQFVEGKANLRADALSRKPEF 400
>gi|291232969|ref|XP_002736426.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 981
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN---WIA 166
F+ K D+ A+ VP+ PS + V + Y L FG S+P++F L+ WIA
Sbjct: 596 FMCKFDIMDAFKQVPLHPSVVPWHGVKWEGKYYFFVRLVFGCRSSPKLFDALSQAICWIA 655
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER------SVLWP 220
+ G++ I++L D D +A+ T+ + N R L P
Sbjct: 656 EH--KYGIKFILHLLDDFFTVDDGEF------SALRTMSIMTLIFNTLRIPLAKHKTLGP 707
Query: 221 VQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYL 252
VQ +YLGIM N LP +K+ I + L
Sbjct: 708 VQELEYLGIMLNSKELMAFLPTDKRIRISQKL 739
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 333 KVVLIQSDNQTVVSYIHK-EGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWAD 391
K + DN+ V I+K +K + + + L LA+R+N ++AR++PG N AD
Sbjct: 889 KRIRFNCDNEATVHIINKGRASSKCQTINKLMRRLTLLAMRYNFIILARFLPGVHNGIAD 948
Query: 392 SLSR 395
SLSR
Sbjct: 949 SLSR 952
>gi|189242129|ref|XP_001810711.1| PREDICTED: similar to orf [Tribolium castaneum]
Length = 1577
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL+Q Y VP+ + V D Y +PFGLA++P VF ++
Sbjct: 747 DRLAGNRYFTSLDLAQGYHQVPMHSDSIHKTAFVTPDGHYEYLRVPFGLANSPAVFQRII 806
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQD 189
N + +R+ +V+ Y+DDLL+ + D
Sbjct: 807 NQMLGNMRH--DQVLAYMDDLLIPSVD 831
>gi|53981184|gb|AAV24824.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1661
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 799 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 858
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 859 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 916
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 917 LGKLREHQLYAKLSKCEFW-LSEVKFLG 943
>gi|38347631|emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa Japonica Group]
Length = 1699
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 917 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 976
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 977 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1034
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1035 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1061
>gi|301620344|ref|XP_002939539.1| PREDICTED: hypothetical protein LOC100497597 [Xenopus (Silurana)
tropicalis]
Length = 1152
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 30/210 (14%)
Query: 84 DRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
DR + + R+ G + K D+ A+ +P+ L + Y
Sbjct: 745 DRELVRVSYTSFDEAVRLAREAGPGALMAKADVESAFRLLPVHRESLHLLGCFFHGKYYV 804
Query: 144 MTCLPFGLASAP---QVFAKLTNWIANYLRNLGMRVIV-YLDDLLL---GNQD--SVLLR 194
CLP G + + + F+ W+ R G+ I+ YLDD L GN +VLL+
Sbjct: 805 DRCLPMGCSISCAYFEAFSTFIEWVVR--RRAGVNTIIHYLDDFLCVAPGNSGLCAVLLQ 862
Query: 195 SQARAAVATLQSL--RWSVNLERSVLWPVQTC-QYLGIMWNPTLDSKSLPLEK------- 244
TLQ + ++ V L R TC ++LGI N L LPL+K
Sbjct: 863 --------TLQEVADQFGVPLAREKTEGPATCLKFLGIEINTVLQECRLPLDKVQVLKGE 914
Query: 245 -QSTIQRYLLTLTQIQWWSVALHRSSPIFP 273
+ T++ +TL Q+Q L+ + I P
Sbjct: 915 VEYTLKAKKVTLKQLQSLLGKLNFACRIIP 944
>gi|116311097|emb|CAH68025.1| OSIGBa0136O08-OSIGBa0153H12.3 [Oryza sativa Indica Group]
Length = 1826
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 945 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1004
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1005 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1062
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1063 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1089
>gi|40786567|gb|AAR89842.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 979 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1038
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1039 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1096
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1097 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1123
>gi|32489198|emb|CAE04383.1| OSJNBa0027G07.25 [Oryza sativa Japonica Group]
gi|38347092|emb|CAE02564.2| OSJNBa0006M15.7 [Oryza sativa Japonica Group]
Length = 1807
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 945 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1004
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1005 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1062
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1063 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1089
>gi|62082809|gb|AAX62232.1| reverse transcriptase [Nymphaea tetragona]
Length = 117
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + K+DL Y+ V I + + V R
Sbjct: 10 YRALNKVTVKNKYPLPLIADLFDQLGKAKIFSKLDLRSGYWQVRIVEGDEPKTTCVTRYG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F+ L N I + L V+VYLDDLL+
Sbjct: 70 AYEFLIMPFGLTNAPATFSTLMNKI--FYPYLDKFVVVYLDDLLI 112
>gi|77555127|gb|ABA97923.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1758
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 911 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 970
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 971 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1028
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1029 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1055
>gi|270016330|gb|EFA12776.1| hypothetical protein TcasGA2_TC005019 [Tribolium castaneum]
Length = 1226
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 90 LKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPF 149
L++FH I ++ IDL +Y+ +P+ P ++ + +Y Y LPF
Sbjct: 683 LRRFHGIR------------YMSTIDLRSSYWQIPLSPESRQCTAFLYNGRSYTYQVLPF 730
Query: 150 GLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR 208
GL +A F++ + + +R V+ Y+DDLL+ ++ R L+ R
Sbjct: 731 GLKTAVGSFSRAMDVVLGTEVREF---VVNYIDDLLVVSETLNEHLEHLRQVFEKLKQAR 787
Query: 209 WSVNLERS 216
++NLE+S
Sbjct: 788 MTINLEKS 795
>gi|147803552|emb|CAN70937.1| hypothetical protein VITISV_021672 [Vitis vinifera]
Length = 282
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
KIDL Y + IRP + S +D LY +PFGL +AP F ++ + +
Sbjct: 37 KIDLRSGYHQIRIRPGDEWKTSFKTKDGLYEWXVMPFGLTNAPSTFMQIMXQVLKPF--I 94
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
G V+VY D+ + ++ + + TL++ ++ +NL++
Sbjct: 95 GRFVVVYFXDIXIYSRSCEDHEEHLKQVMRTLRAEKFCINLKKCTF 140
>gi|110289465|gb|ABG66211.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1666
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 800 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 859
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 860 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLV 917
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 918 LGKLREHQLYAKLSKCEFW-LSEVKFLG 944
>gi|108708189|gb|ABF95984.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 923 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 982
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 983 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1040
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1041 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1067
>gi|34015323|gb|AAQ56513.1| putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 327
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 56 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIQKTAFTTRYG 115
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP +F L N + ++ + V+V++DD+L+ +Q + R
Sbjct: 116 LYEFTVMSFGLTNAPAIFMNLMNKV--FMEYVDKFVVVFIDDILVYSQSEEDHQQHLRLV 173
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L + L + W + ++LG
Sbjct: 174 LGKLWEHQLYAKLSKCEFW-LSEVKFLG 200
>gi|21743213|emb|CAD40068.1| OSJNBa0085C10.21 [Oryza sativa Japonica Group]
Length = 1825
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 152/388 (39%), Gaps = 71/388 (18%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 944 YRALNEVTIKNKYPLPRIDDLFDQLKVATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1003
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1004 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1061
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYL-------GIMWNPTLDSKSLPLEKQSTIQ--RY 251
+ L+ + L + W + ++L G+ +P S ++ T+ R
Sbjct: 1062 LGKLREHQLYAKLSKCEFW-LSEVKFLGHVISAKGVAVDPETVSAVTDWKQPKTVTQVRS 1120
Query: 252 LLTLTQIQW------------------------WSVALHR----------SSP--IFPQA 275
L L W WS + SSP I P
Sbjct: 1121 FLGLAGYYWRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDT 1180
Query: 276 PQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINLKEMFAVRSALERKLPV 329
+ F V DAS G G ++ D H + H+ + + E+ AV AL+
Sbjct: 1181 RKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHY 1240
Query: 330 LQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
L I +D+++ + YI T+S LR+ L +L +++ + Y PGK N
Sbjct: 1241 LIGNRCEIYTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDYDVGI--HYHPGKANVV 1292
Query: 390 ADSLSRQKELPDWHLL---PEVTQHIFA 414
AD+LSR+ ++ PE+ Q + A
Sbjct: 1293 ADALSRKSHCNTLNVRGIPPELNQQMEA 1320
>gi|21672037|gb|AAM74399.1|AC119149_14 Putative retroelement [Oryza sativa Japonica Group]
gi|31431043|gb|AAP52881.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 940 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 999
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1000 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1057
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ----RYLLTLT 256
+ L+ + L + W + ++LG + + +K + ++ ++ I + T+T
Sbjct: 1058 LGKLREHQLYAKLSKCEFW-LSEVKFLGHV----ISAKGVAVDPETVIAVTDWKQPKTVT 1112
Query: 257 QIQ 259
QI+
Sbjct: 1113 QIR 1115
>gi|77554650|gb|ABA97446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 966 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1025
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1026 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1083
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1084 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1110
>gi|22857594|gb|AAN09868.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1802
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 921 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 980
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 981 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1038
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1039 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1065
>gi|147860873|emb|CAN81056.1| hypothetical protein VITISV_033320 [Vitis vinifera]
Length = 997
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L + + K+DL Y+ V I + V R Y +PFGL +AP F L N
Sbjct: 441 LSKASYFTKLDLRSGYWQVRIATGDEGKTICVTRYGSYEFLVMPFGLTNAPATFCNLMND 500
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQ 188
I Y L V+VYLDD+++ N+
Sbjct: 501 ILFYY--LDAFVVVYLDDIVVYNK 522
>gi|55168118|gb|AAV43985.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55168194|gb|AAV44060.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1772
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 891 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 950
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 951 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1008
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1009 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1035
>gi|268566149|ref|XP_002647483.1| Hypothetical protein CBG06557 [Caenorhabditis briggsae]
Length = 994
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 257 QIQWWSVA----LHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHIN 312
+I++W L R+ P F+ TDAS G G ++ N +W E+ N
Sbjct: 232 EIEFWRARGAELLRRNLLEVESMPDFFLYTDASARGIGGLLKNERQDILWK-MTEIGDGN 290
Query: 313 L-------KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEA 365
+E+ AV A R L+ +V ++ D+Q VS + + G K
Sbjct: 291 FEKQSSAWRELTAVEVASARISSNLKGRVQVL-VDSQAAVSVLRR-GSMKP--------E 340
Query: 366 LFDLAVR--HNITLMAR----YIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVP 419
L LA R HN+ + +IP + N AD SR + DW + V H WG
Sbjct: 341 LHSLAERVWHNLENVGESSFLWIPREKNVEADEASRNFDFDDWGIAERVFSHAQRMWGEI 400
Query: 420 EIDLFATANS 429
++D FA AN+
Sbjct: 401 KVDWFADANN 410
>gi|54287531|gb|AAV31275.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287635|gb|AAV31379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1417
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 391 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 450
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 451 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 508
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 509 LGKLREHQLYAKLSKCEFW-LSEVKFLG 535
>gi|50300553|gb|AAT73694.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 897 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 956
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 957 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQTEEDHQHHLRLV 1014
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1015 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1041
>gi|38344639|emb|CAE05072.2| OSJNBa0094P09.11 [Oryza sativa Japonica Group]
Length = 976
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 95 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 154
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 155 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 212
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 213 LGKLREHQLYAKLSKCEFW-LSEVKFLG 239
>gi|427798051|gb|JAA64477.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 661
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
V D L + +DL Y+ +P+ P+ + + + D L+ +PFGL +AP F +
Sbjct: 377 VIDCLHSASYFSSVDLRSGYWQIPMHPNDKEKTAFITPDGLFEFNVMPFGLCNAPATFER 436
Query: 161 LTNWIANYLRNLGMRV-IVYLDDLLL 185
+ I LR L V + YLDD+++
Sbjct: 437 FMDTI---LRGLKWEVCLCYLDDIII 459
>gi|326669295|ref|XP_003198979.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1420
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 146/371 (39%), Gaps = 83/371 (22%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY V IR + + Y +PFGLA+AP VF
Sbjct: 593 EILQGATIFTKLDLRSAYHLVRIRQGDEWKTAFNTPTGHYEYQVMPFGLANAPAVFQSFI 652
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + + L + V VYLDD+L+ + + R + L V LE+S V
Sbjct: 653 NDVLREM--LNIFVFVYLDDILIFSHNPEEHVIHVRKVLIELLKHGLFVKLEKSEFH-VS 709
Query: 223 TCQYLGIMWNPTLDSKSLPLEKQST--------------IQRY----------------- 251
+ +LG + + SL ++ T +QR+
Sbjct: 710 SVSFLGFI----VSKGSLQMDPSKTRAVLDWPQPTSIKEVQRFLGFANFYRRFIRNFSSI 765
Query: 252 ---LLTLTQ-----IQW-------WSVALHR--SSPIF----PQAPQVFVSTDASNSGWG 290
L +LT+ W ++ HR S+PI P+ P + DAS+ G G
Sbjct: 766 AEPLTSLTKKANTPFTWNDKASTAFNTLKHRFTSAPILTLPDPELP-FILEVDASDIGVG 824
Query: 291 AIV------DNHSLGGVWSDH-----QEMWHINLKEMFAVRSALERKLPVLQ--DKVVLI 337
A++ DN + H Q + I +E+ A++ ALE L+ LI
Sbjct: 825 AVLSQRSKADNKLHPCAFYSHRLTPTQANYDIGNRELLAIKLALEEWRHWLEGASHPFLI 884
Query: 338 QSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQ 396
+D+Q ++YI ++ K L +A + L R TL R PG N D+LSRQ
Sbjct: 885 WTDHQN-LTYI------QNAKRLNARQARWSLFFNRFKFTLSFR--PGSKNIKPDALSRQ 935
Query: 397 KELPDWHLLPE 407
E + PE
Sbjct: 936 FEPSEKPCCPE 946
>gi|108711739|gb|ABF99534.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 979 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1038
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1039 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1096
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1097 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1123
>gi|326663872|ref|XP_003197684.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1110
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 152/395 (38%), Gaps = 82/395 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL Y + IR + D Y +PFGLA++P VF N
Sbjct: 277 LRSAQYFTKLDLRSPYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 336
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 337 I--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IQNQLYAKSSKCEFHQTC 392
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 393 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 452
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 453 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 512
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK----VVLIQSDN 341
SL + + + + +E+ A+++ALE L+ +V+ N
Sbjct: 513 SLVTKKLHSCAFYSRKLNSTERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 572
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR--QKEL 399
+ + K + ALF +T YIPG N AD+LSR E
Sbjct: 573 LEYIRFC------KRLNPRQARWALFFTRFDFQVT----YIPGSKNIKADALSRLSDDET 622
Query: 400 PDWHLLPEVTQHIFA---QWGVPEIDLFATANSAA 431
++H P + + QW + + L A N+ +
Sbjct: 623 SEFHDEPIIKDPLIVAPIQWDIEQEILQAAENNPS 657
>gi|91176531|gb|ABE26655.1| pol polyprotein [Nosema bombycis]
Length = 1123
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 110/303 (36%), Gaps = 61/303 (20%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
V D L K+D Y + +R + R+ L+ +PFGL + P F +
Sbjct: 463 VLDALGEAKIFTKLDALSGYHQIKMREEDIEKTAFACREGLFEFLRMPFGLVNGPATFQR 522
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW- 219
N I LG V+VY+DD+++ ++D R + L+ +N E+ +
Sbjct: 523 AMNRILRPF--LGRFVMVYMDDMIIYSRDKREHEGHVREVLDALKQAGLKLNEEKCAYFQ 580
Query: 220 -PVQTCQYL----GIMWNP----TLDSKSLPLEKQST---------IQRYLLTLTQ---- 257
++ ++ GI +P + LP + + R++ ++T+
Sbjct: 581 DEIKILGHVVGRHGIRADPDRVKAIRDLELPTCRTEVESFLGLINYVSRFMKSVTEDTGY 640
Query: 258 ----------IQWWSV--------ALHRSSPIF--------PQAPQVFV-STDASNSGWG 290
W S A HR P+ F+ +TDAS+ G G
Sbjct: 641 FYDLLKKDSKFDWGSSVDNAEFVEAFHRVKANMDDLAVMGIPRREGKFILTTDASDRGIG 700
Query: 291 AIVDN---------HSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDN 341
AI G + ++ + KE+ V +LER P L +++D+
Sbjct: 701 AIFSQVQDGKERILEFFGKAHTKAEKNYSTTEKELLGVVKSLERFRPYLLGNRFTLKTDH 760
Query: 342 QTV 344
+
Sbjct: 761 SAI 763
>gi|427780691|gb|JAA55797.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1102
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
V D L + +DL Y+ +P+ P+ + + + D L+ +PFGL +AP F +
Sbjct: 327 VIDCLHSASYFSSVDLRSGYWQIPMHPNDKEKTAFITPDGLFEFNVMPFGLCNAPATFER 386
Query: 161 LTNWIANYLRNLGMRV-IVYLDDLLL 185
+ I LR L V + YLDD+++
Sbjct: 387 FMDTI---LRGLKWEVCLCYLDDIII 409
>gi|158935574|emb|CAP16620.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 365
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + + K+DL Y+ V I + + V R
Sbjct: 10 YRALNKVTVKNKYPIPLIADLFDQLGKAKYFSKLDLRSGYWQVRIAEGDEAKTTCVTRYG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ LPFGL +AP F L N + + L V+VYLDD+++ +Q
Sbjct: 70 AFEFLVLPFGLTNAPATFCTLMNQL--FKEYLDKFVVVYLDDIVVYSQ 115
>gi|358333389|dbj|GAA51908.1| hypothetical protein CLF_106999 [Clonorchis sinensis]
Length = 439
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DL+ AY + + + L++ L+ LPFG+ SAP +F + +
Sbjct: 318 LNGGKCFAKLDLADAYLQIEVSDDSKELLTINTHRGLFQFNRLPFGVKSAPAIFQQTMDA 377
Query: 165 IANYLRNLGMRVIVYLDDLLL--GNQDSVLLR 194
+ N L V YLDD++L NQ+ +L R
Sbjct: 378 MLNGLSG----VAAYLDDIILTGSNQEELLHR 405
>gi|270016830|gb|EFA13276.1| hypothetical protein TcasGA2_TC016027 [Tribolium castaneum]
Length = 1504
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL+Q Y VP+ + V D Y +PFGLA++P VF ++
Sbjct: 747 DRLAGNRYFTSLDLAQGYHQVPMHSDSIHKTAFVTPDGHYEYLRVPFGLANSPAVFQRII 806
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQD 189
N + +R+ +V+ Y+DDLL+ + D
Sbjct: 807 NQMLGNMRH--DQVLAYMDDLLIPSVD 831
>gi|77555766|gb|ABA98562.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1824
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LL+ +DG + + + +L + + N + +P D L+ KIDL Y +
Sbjct: 969 LLVKKKDGSERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLK 1027
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY T + FGL +AP F L N I ++ L V+V++DD+L
Sbjct: 1028 IRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKI--FMEYLDQFVVVFIDDIL 1085
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
+ +++ R + L+ R + W
Sbjct: 1086 IYSKNEEEHAEHMRLIMEKLRDHRLFAKFSKCEFW 1120
>gi|147808044|emb|CAN64174.1| hypothetical protein VITISV_037031 [Vitis vinifera]
Length = 815
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN-YL 169
L +IDL Y + IR S+ R Y +PFGL +AP F + N I YL
Sbjct: 335 LNRIDLRSGYHQLRIRESNIPKTIFCTRYGHYEFVVMPFGLTNAPAAFMNMMNRICRPYL 394
Query: 170 RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGI 229
+ V+V++DD+L ++ A+ TL+ + LE+ W +Q Q+LG
Sbjct: 395 DHF---VVVFVDDILTYSKSREEHGHHLHMALQTLREHQLYAKLEKCDFW-LQEIQFLGH 450
Query: 230 M 230
M
Sbjct: 451 M 451
>gi|115676939|ref|XP_001186509.1| PREDICTED: uncharacterized protein LOC754648 [Strongylocentrotus
purpuratus]
Length = 1464
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R + KIDL++ Y+ VP+ + + V D LY +PFGL +AP F+++
Sbjct: 1123 LSRAKYFTKIDLTKGYWQVPLTEEAKELTAFVTPDGLYQFRSMPFGLVNAPASFSRIMRA 1182
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ LR L V ++DD+L+
Sbjct: 1183 L---LRGL-HGVDNFIDDILI 1199
>gi|54287545|gb|AAV31289.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1721
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 874 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 933
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 934 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 991
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 992 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1018
>gi|38344419|emb|CAE02385.2| OSJNBb0080H08.11 [Oryza sativa Japonica Group]
Length = 1809
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 941 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1000
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1001 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 1058
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1059 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1085
>gi|308462401|ref|XP_003093484.1| hypothetical protein CRE_26772 [Caenorhabditis remanei]
gi|308250141|gb|EFO94093.1| hypothetical protein CRE_26772 [Caenorhabditis remanei]
Length = 518
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT----LYCMTCLPFGLASAPQVFAKLTNWI 165
F D Y HV I + FL+ D Y LPFGL++AP +F K+ I
Sbjct: 3 FAATFDFKSGYHHVKIEENSSEFLAFSLTDPPKAPFYKYRALPFGLSTAPWLFTKIFRPI 62
Query: 166 ANYLRNLGMRVIVYLDD-LLLGNQDSVLLRSQARAAVATLQSLRWSVNLER-SVLWPVQT 223
R G+++ +Y+DD L++ L+R AV+ ++S +LER V +
Sbjct: 63 VGKWRRDGIKIWLYIDDGLIVAETKEELIR-----AVSIVRS-----DLERLGVALADEK 112
Query: 224 CQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHR 267
C W P+ S+ L ++R +TL++ ++ +V LHR
Sbjct: 113 CS-----WEPS--SEFTWLGFVGDLRRKTVTLSEKRYKAV-LHR 148
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 17/217 (7%)
Query: 242 LEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQA---PQVFVSTDASNSGWGAIVDN--- 295
L + I++ L +I++WS + R S + P TDAS G GA++ N
Sbjct: 200 LPETRRIEKTKGELAEIRFWSENIRRLSSTKLEENFRPVWRAYTDASADGMGALLKNLEG 259
Query: 296 ---HSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEG 352
+ V +D + ++E+ A+R L R++ ++ D+Q V+ + K
Sbjct: 260 EVVCRISEVGADTFKSESSAMRELKAMR-MLARRIAGWIRGAIVCYVDSQAAVAILKK-- 316
Query: 353 GTKSFKLLREVEALFD-LAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQH 411
G+ S +L E ++D N+ + +IP + N AD SR + DW + +V
Sbjct: 317 GSMSSELQEVAEQVWDAFQTVGNVRFL--WIPRELNKEADFASRDFDFDDWGVDQKVFLW 374
Query: 412 IFAQWGVPEIDLFATANSAA--FLVQGGPLKFPDGIN 446
+WG + D FA +A P K G N
Sbjct: 375 AQTRWGEFKCDWFADEANAKTQLFYSRDPGKCSQGAN 411
>gi|384489900|gb|EIE81122.1| hypothetical protein RO3G_05827 [Rhizopus delemar RA 99-880]
Length = 595
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 254 TLTQIQWWS--VALHRSSPIFPQAPQVF-----VSTDASNSGWGAIVDNHSLGGVWSDHQ 306
+L +QWW + PI P++ + DASN+GW + G W++ +
Sbjct: 128 SLQDLQWWEKWSTVKNGLPIHVTPPEILMPKLTIHVDASNTGWRVKSNVMETSGFWTEEE 187
Query: 307 EMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFK-----LLR 361
+ IN++E+ + AL+ + +D + I SDN+T + Y+ + + + R
Sbjct: 188 KETSINVRELQTIYFALKLQARNAKDSTIHIFSDNKTALKYVQFDSNIQPYSGNQEYTSR 247
Query: 362 EVEALFDLAVRHNIT 376
+E+ + A+R T
Sbjct: 248 PIESTSNPALRMETT 262
>gi|54287641|gb|AAV31385.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1493
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 644 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDISKTAFITRYG 703
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 704 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 761
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 762 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 792
>gi|55733831|gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1238
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 357 YRTLNEVTIKNEYPLPRIDDLFDQLKGATVFSKIDLQSGYHQLRIREEDIPKTAFITRYG 416
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 417 LFECTVMSFGLTNAPDFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 474
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 475 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 505
>gi|4689454|gb|AAD27902.1|AC006267_7 putative polyprotein [Arabidopsis thaliana]
gi|7267450|emb|CAB81146.1| putative polyprotein [Arabidopsis thaliana]
Length = 1054
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL Y ++ + ++ + LY +PFGL +AP F +L
Sbjct: 550 DKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQRLYEWLVMPFGLTNAPNTFMRLM 609
Query: 163 NWIANYLRNLGMRVIVYLDDLLL 185
N + +++G+ VIVY DD+L+
Sbjct: 610 NHVLR--KHIGVFVIVYFDDILV 630
>gi|88595575|gb|ABD43094.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ KIDL Y + IR S + R Y +PFGL +AP VF +L
Sbjct: 28 DQLQGATVFSKIDLRSGYHQLRIRKSDIPKSAFRSRYGHYEFIVMPFGLTNAPAVFMQLM 87
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
N + ++ L V+V++DD+L+ +++ R + L+S + L + W
Sbjct: 88 NRV--FIEYLDKCVVVFIDDILIYSKNPDEHEEHLRLVLNLLRSEKLYAKLSKCEFW 142
>gi|115676941|ref|XP_785663.2| PREDICTED: uncharacterized protein LOC580518 [Strongylocentrotus
purpuratus]
Length = 1487
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R + KIDL++ Y+ VP+ + + V D LY +PFGL +AP F+++
Sbjct: 1147 LSRAKYFTKIDLTKGYWQVPLTEEAKELTAFVTPDGLYQFRSMPFGLVNAPASFSRIMRA 1206
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ LR L V ++DD+L+
Sbjct: 1207 L---LRGL-HGVDNFIDDILI 1223
>gi|2995405|emb|CAA73042.1| polyprotein [Ananas comosus]
Length = 871
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y + I+P + R
Sbjct: 73 YRELNKVTIKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYG 132
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL +AP F L N + YL V+V++DD+L+ ++ R
Sbjct: 133 HYEFAVMPFGLTNAPTAFMDLMNRVFKPYLDRF---VVVFIDDILVYSRSDADHEEHLRI 189
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ V L++ W ++ +LG
Sbjct: 190 VLQVLREKELYVKLKKCEFW-LREVAFLG 217
>gi|328871951|gb|EGG20321.1| hypothetical protein DFA_07444 [Dictyostelium fasciculatum]
Length = 1441
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +L K + + F +P + + + KIDL + + I+ H +
Sbjct: 565 FRALNKQTVADRFPLPRIDQLIEKIAKAKIFSKIDLKDGFNQIRIKDEHTHKTAFSTPSG 624
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y T +PFGL +AP F + N A + L VI+Y+DD+L+ +++ +
Sbjct: 625 HYEYTVIPFGLRNAPSAFVRAIN--AAFADILDTFVIIYIDDILIFSENENDHYEHIKQV 682
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP 233
+ L+S + N +S V+ ++LG + P
Sbjct: 683 LDRLRSNKLFANKAKSSFL-VKEVEFLGHLITP 714
>gi|326669487|ref|XP_003199024.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1359
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 149/384 (38%), Gaps = 84/384 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 452 YRGLNDITIKNRYPLPLMSSAFELLQGAQVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 511
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + + R
Sbjct: 512 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNQFVFVYLDDILIFSPSMQVHTQHVRQ 568
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V ++ +LG + + PT DS+ L
Sbjct: 569 VLQRLLENQLFVKAEKCVFH-AKSVSFLGFVISAGEIKADPSKVRAVAEWPTPDSRKA-L 626
Query: 243 EK----QSTIQRYLLTLTQIQ--------------WWSVALHR---------SSPIF--- 272
++ + +R++ +QI W S A S+P+
Sbjct: 627 QRFLGFANFYRRFIRNFSQIAAPLTVLTSPKVPFIWGSKAQEAFDNLKSRFISAPVLSIP 686
Query: 273 -PQAPQVFVSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVR 320
P+ Q V DAS+ G GA++ S S + + I +E+ AVR
Sbjct: 687 DPKR-QFIVEVDASDVGVGAVLSQRSQRDEKVHPCAFFSHRLSPTERNYDIGNRELLAVR 745
Query: 321 SALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITL 377
AL L+ V ++ +D++ + YI + K L +A + L R N TL
Sbjct: 746 LALGEWRHWLEGAVQPFVVWTDHKN-LEYI------STAKRLSSRQARWSLYFSRFNFTL 798
Query: 378 MARYIPGKFNTWADSLSRQKELPD 401
Y PG NT DSLSR P+
Sbjct: 799 S--YRPGSKNTKPDSLSRMFSAPE 820
>gi|77553962|gb|ABA96758.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + L N + +P D L+ KIDL Y + IR + R
Sbjct: 905 YRALNEVTLKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 964
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++ + R
Sbjct: 965 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSRSEEDHQHHPRLV 1022
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1023 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1049
>gi|326664766|ref|XP_003197878.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1515
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 136/354 (38%), Gaps = 77/354 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 410 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 469
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L VIVY+DD+L+ + RA + L + + + QTC
Sbjct: 470 V--FRDMLNKWVIVYIDDILVYSNSLSEHIQHVRAVLERLIQNQLYAKISKCEFH--QTC 525
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 526 ISFLGYIISPEVVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 585
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 586 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFIVEIDASNTGIGAILSQR 645
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK----VVLIQSDN 341
SL + + + + +E+ A+++ALE L+ V+ N
Sbjct: 646 SLVTKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFTVITDHKN 705
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 706 ---LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 749
>gi|62734703|gb|AAX96812.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550092|gb|ABA92889.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 770 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 829
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 830 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 887
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 888 LGKLREHQLYAKLSKCEFW-LSEVKFLG 914
>gi|32487701|emb|CAE05378.1| OSJNBa0022F16.2 [Oryza sativa Japonica Group]
gi|38346701|emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa Japonica Group]
Length = 1494
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 14/210 (6%)
Query: 25 REIWDVSTLISWISDHPPNQDSFFEVARHTAILLLLCSGRRVHDLTLLLSSRDGFQDLGD 84
RE DV + PPN++ F + L R+ L + ++L +
Sbjct: 814 REFGDV--FPEELPGMPPNREIEFRIDLAPGTTPLYKRPYRMA-ANELAEVKKQLEELKE 870
Query: 85 RAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYR 138
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 871 KG--ALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTR 928
Query: 139 DTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQAR 198
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 929 YGLYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLR 986
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 987 LVLGKLREHQLYAKLSKCEFW-LSEVKFLG 1015
>gi|88595529|gb|ABD43071.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILIYSKSEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L + R + W
Sbjct: 124 LNILGTERLYAKFSKCEFW 142
>gi|328867820|gb|EGG16201.1| hypothetical protein DFA_09229 [Dictyostelium fasciculatum]
Length = 1100
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 87 FLSLKKFHLINHFRVPDFLQ------RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
F +L K + + F +P Q + KIDL + + I+ H +
Sbjct: 467 FRALNKQTVADRFPLPRIDQLIEKIAKAKIFSKIDLKDGFNQIRIKDEHTHKTAFSTPSG 526
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y T +PFGL +AP F + N A + L VI+Y+DD+L+ +++ +
Sbjct: 527 HYEYTVIPFGLRNAPSAFVRAIN--AAFADILDTFVIIYIDDILIFSENENDHYEHIKQV 584
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP 233
+ L+S + N +S V+ ++LG + P
Sbjct: 585 LDRLRSNKLFANKAKSSFL-VKEVEFLGHLITP 616
>gi|326673580|ref|XP_003199928.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1323
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 142/352 (40%), Gaps = 74/352 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ F K+DL AY V ++ H+ + + + LPFGL++AP VF L N
Sbjct: 420 LQGASFFTKLDLRNAYHLVRMKQGHEWKTAFLTPRGHFEYCVLPFGLSNAPAVFQALVN- 478
Query: 165 IANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR++ + I VYLDD+L+ ++ R + L V E+ V Q+
Sbjct: 479 --DVLRDMIDQFIYVYLDDILIFSRSLQEHVQHVRRVLQRLLENGLFVKAEKCVFH-AQS 535
Query: 224 CQYLG---IMWNPTLDSKSL------PL-EKQSTIQRYL--------------------- 252
+LG + +D + + P+ E + +QR+L
Sbjct: 536 VPFLGHIVSVEGVRMDPEKVQAVVNWPIPESRKALQRFLGFANFYRRFIRNFSQLAAPLT 595
Query: 253 ---LTLTQIQWWSVA---------LHRSSPIF---PQAPQVFVSTDASNSGWGAIVDNHS 297
T +W SVA S+PI A Q V DAS G GAI+ +
Sbjct: 596 SLTSAKTPFRWSSVAQAAFTKLKGCFVSAPILVTPDPARQFVVEVDASEVGVGAILSQRA 655
Query: 298 -----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQTV 344
S + + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 656 ASDDRIHPCAFFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKN- 714
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L R + T+ Y PG NT D+LSR
Sbjct: 715 LEYI------RSAKRLNSRQARWALFFGRFDFTIS--YRPGSKNTKPDALSR 758
>gi|38344714|emb|CAE05256.2| OSJNBb0115I09.18 [Oryza sativa Japonica Group]
Length = 1134
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 397 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 456
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 457 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 514
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 515 LGKLREHQLYAKLSKCEFW-LSEVKFLG 541
>gi|291238548|ref|XP_002739190.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 465
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 134/359 (37%), Gaps = 73/359 (20%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G L K+D+ A+ P+R L + Y LPFGL SAP +F ++ +
Sbjct: 79 GSLLAKVDIQHAFRLCPVRKQDWHLLGYKWDGHYYFDRVLPFGLRSAPFLFNRIATALEW 138
Query: 168 YLRNLGMR--VIVYLDD-LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+R+ +I YLDD L +G + + + T +L V + V P
Sbjct: 139 VVRHQAKTSDIIHYLDDFLAVGPPNHQSCQRSKDIILNTCSTLGIPVAANK-VEGPSSII 197
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTI--------------QRYLLTLT-------------- 256
+LG+ + LP +K I +R LL+L
Sbjct: 198 TFLGVELDTVDMVIRLPADKLENILSTIPLWANRYHCSKRELLSLIGTLSFACKCVPAGR 257
Query: 257 ----------------------------QIQWWSVAL---HRSSPIFPQA----PQVFVS 281
+QWW L + S+ I + P +
Sbjct: 258 LFLRRMIDLATTASSINQIIILSNDFRLDLQWWWEFLPNWNGSARILATSWCLTPNTNLY 317
Query: 282 TDASNS-GWGAIVDNHSLGGVWSDHQEMWH----INLKEMFAVRSALERKLPVLQDKVVL 336
TDAS+ GA + WS + + I KE+F + + + + ++
Sbjct: 318 TDASSVIACGAFYNKQWFTLPWSPDKCSINPPLSIEWKELFPILISCLIWGHLWHGQKIM 377
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
DN+ +V+ I K+G ++ +++ V A+F A N +M +I G N+ ADSLSR
Sbjct: 378 FHCDNEGIVN-IWKKGSSRCQRIMSLVRAIFFTAANGNFHVMIAHIRGTNNSIADSLSR 435
>gi|88595687|gb|ABD43150.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 6 YRELNRLTVKNKYPLPRIEDLFDQLRGAGIFSKIDLRSGYHQLKIRECDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +PFGL++AP VF L N + + L VIV++DD+L+ ++D + R A
Sbjct: 66 HFEFVVMPFGLSNAPAVFMDLMNRV--FQPYLDKFVIVFIDDILVYSKDKEQHQEHLRIA 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ TL+ + ++ W
Sbjct: 124 LETLRKEKLYAKFKKCEFW 142
>gi|315041357|ref|XP_003170055.1| hypothetical protein MGYG_09147 [Arthroderma gypseum CBS 118893]
gi|311345089|gb|EFR04292.1| hypothetical protein MGYG_09147 [Arthroderma gypseum CBS 118893]
Length = 1590
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N +P D L F K+DL +AY V I+ + + R
Sbjct: 611 YRGLNKMTIKNRLTLPRVDEMLDRLAGAMFFTKLDLREAYHRVRIKEGDEWKTAFRTRYG 670
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGLA+AP F N + L ++ IVYLDD+L+
Sbjct: 671 HYEYLVMPFGLANAPATFQGYINRVLTGLVDIA--CIVYLDDILI 713
>gi|38347567|emb|CAE05000.2| OSJNBb0093G06.8 [Oryza sativa Japonica Group]
Length = 1770
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 889 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 948
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 949 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQYHLRLV 1006
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1007 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1033
>gi|326678668|ref|XP_003201134.1| PREDICTED: hypothetical protein LOC100536674 [Danio rerio]
Length = 1234
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R S KF R+ D L+R F+ +DL + Y+ VP+ S + + L
Sbjct: 903 RKLNSQSKFDAYPMPRIDDLLERIGQARFITTLDLCKDYWQVPLHHSSKALTAFRTPVGL 962
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
Y T LPFGL AP F +L + + L+ YLDD+++ + R +
Sbjct: 963 YQFTVLPFGLHGAPATFQRLMDQV---LQGCEEYAAAYLDDVVIYSHTWEDHLKHLRQTL 1019
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+Q+ S+N+ + W YLG +
Sbjct: 1020 EKIQAAGLSLNVVK-CEWGRGETNYLGYI 1047
>gi|110288854|gb|ABB47095.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 998
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + + R LY T + FGL +AP F L
Sbjct: 139 DQLKGATVFSKIDLRSGYHQLRIREADIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLM 198
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ +Q + R + L+ + L + W +
Sbjct: 199 NKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFW-LS 255
Query: 223 TCQYLG 228
++LG
Sbjct: 256 EVKFLG 261
>gi|67625690|tpe|CAJ00230.1| TPA: gag-pol polyprotein [Schistosoma mansoni]
Length = 1357
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DLS+AY +P+ + L++ L+ LPFG+ +AP +F ++ +
Sbjct: 566 LNGGKLFAKLDLSEAYLQIPVADECKNLLTINTHKGLFRYNRLPFGVKTAPSIFQQVMDT 625
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + YLDD+++ D + L + ++ + + + E+ ++
Sbjct: 626 MLQDVPGAA----AYLDDIIIMGVDKIDLEKKLDQVLSRIAEYGFRLRAEKCNFC-MKKV 680
Query: 225 QYLGIM 230
YLG +
Sbjct: 681 SYLGFI 686
>gi|78708041|gb|ABB47016.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 968 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1027
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1028 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLL 1085
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1086 LGKLREHQLYAKLSKCEFW-LSKVKFLG 1112
>gi|115676946|ref|XP_001186732.1| PREDICTED: uncharacterized protein LOC754701 [Strongylocentrotus
purpuratus]
Length = 1291
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R + KIDL++ Y+ VP+ + + V D LY +PFGL +AP F+++
Sbjct: 951 LSRAKYFTKIDLTKGYWQVPLTEEAKELTAFVTPDGLYQFRSMPFGLVNAPASFSRIMRV 1010
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ LR L V ++DD+L+
Sbjct: 1011 L---LRGL-HGVDNFIDDILI 1027
>gi|37991885|gb|AAR06331.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1184
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + + R L+ T + FGL +AP F L
Sbjct: 520 DQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLM 579
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ ++ + R + L+ + + W ++
Sbjct: 580 NKV--FMEFLDKFVVVFIDDILIYSKSEEEHKQHLRLVLEKLKEHQLYAKFSKCDFW-LK 636
Query: 223 TCQYLGIMWN 232
Q+LG + N
Sbjct: 637 EVQFLGHIVN 646
>gi|432957790|ref|XP_004085880.1| PREDICTED: uncharacterized protein LOC101163468, partial [Oryzias
latipes]
Length = 747
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHF------RVPDFLQR---GDFLVKIDLSQAYF 121
+LL +DG R + +K + ++ F RV + L+R ++ +DL Y+
Sbjct: 383 ILLPKKDGTL----RPCIDFRKLNAVSEFDAYPMPRVDELLKRIGVAGYITTLDLCMGYW 438
Query: 122 HVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLD 181
VP+ P+ + + + L+ T +PFGL A F KL + + N Y D
Sbjct: 439 QVPLEPASRPYTAFRTPAGLFQFTVMPFGLHGAAATFQKLMDKVLQGCENFSA---AYPD 495
Query: 182 DLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
DL++ + R + +Q ++N E+ W + +YLG +
Sbjct: 496 DLVIFSYTWEDHLQHLRRVLDAIQQAGLTLNSEKCE-WARKEAKYLGYL 543
>gi|326670751|ref|XP_003199285.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL AY V IR + V Y +P+GL +AP VF N+
Sbjct: 562 LRSAKIFTKLDLRSAYNLVRIRRGDEWKTGFVTPTGHYEYRVMPYGLVNAPSVFQ---NF 618
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + VIVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 619 IHEVLREFLHLFVIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKAEKCSFH-LPS 677
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 678 VQFLGYV 684
>gi|115676936|ref|XP_785557.2| PREDICTED: uncharacterized protein LOC580404 [Strongylocentrotus
purpuratus]
Length = 1463
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R + KIDL++ Y+ VP+ + + V D LY +PFGL +AP F+++
Sbjct: 1123 LSRAKYFTKIDLTKGYWQVPLTEEAKELTAFVTPDGLYQFRSMPFGLVNAPASFSRIMRV 1182
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ LR L V ++DD+L+
Sbjct: 1183 L---LRGL-HGVDNFIDDILI 1199
>gi|13992691|gb|AAK51585.1|AC022352_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1862
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 981 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1040
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1041 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1098
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ----RYLLTLT 256
+ L+ + L + W + ++LG + + +K + ++ ++ I + T+T
Sbjct: 1099 LEKLREHQLYAKLSKCEFW-LSEVKFLGHV----ISAKGVAVDPETVIAVTDWKQPKTVT 1153
Query: 257 QIQ 259
QI+
Sbjct: 1154 QIR 1156
>gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431096|gb|AAP52927.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 944 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLHSGYHQLRIREEDIPKTAFTTRYG 1003
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1004 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1061
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1062 LGKLREHQLYAKLSKREFW-LSEVKFLG 1088
>gi|356523789|ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800881 [Glycine max]
Length = 1746
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 138/342 (40%), Gaps = 70/342 (20%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
KIDL Y + IR + + + LY +PFGL +AP F +L N + +
Sbjct: 735 KIDLKSGYNQIRIREGDEWKTAFKTKYGLYEWMVMPFGLTNAPSTFMRLMNHVLREF--I 792
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
G V+VY DD+L+ + L ++ ++ L+ + NLE+ +LG +
Sbjct: 793 GKFVVVYFDDILIYSTSLDLHVQHLQSVLSVLRKEKLYANLEKCSFCTDHVV-FLGFVV- 850
Query: 233 PTLDSKSLPLEKQSTIQRYLL--TLTQIQWWS--VALHR--------------------- 267
+ + + +EK IQ + TL++++ + + +R
Sbjct: 851 -SAEGVRVDVEKVKAIQEWPTPKTLSEVRGFHGLASFYRRFVKDFSTLAAPLTEVVKKNV 909
Query: 268 --------------------SSPIF--PQAPQVF-VSTDASNSGWGAIV--DNHSLGGVW 302
++PI P + F + DASN G GA++ + H + +
Sbjct: 910 GFKWGKKQEEAFAALKHMLTNAPILAMPNFAKSFEIECDASNVGIGAVLLQEGHPI-AYF 968
Query: 303 SDHQEMWHINL----KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGG-TKSF 357
S+ +N KE++A+ AL+ L K +I SD+++ + Y+ +G K
Sbjct: 969 SEKLGAAALNYSTYDKELYALVRALQTWQHYLLPKEFVIHSDHES-LKYLKGQGKLNKRH 1027
Query: 358 KLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKEL 399
E F ++H GK N AD+LSR+ L
Sbjct: 1028 AKWVEFLEQFPYVIKHK--------KGKGNVVADALSRRHAL 1061
>gi|40786577|gb|AAR89852.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711716|gb|ABF99511.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 513 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRIADIPKTAFSTRYG 572
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 573 LYEFTVMSFGLTNAPAYFMNLMNKV--FVDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 630
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 631 LEKLRKHKLYAKFSKCEFW-LKEVAFLG 657
>gi|78708125|gb|ABB47100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 940 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 999
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1000 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1057
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQ----RYLLTLT 256
+ L+ + L + W + ++LG + + +K + ++ ++ I + T+T
Sbjct: 1058 LEKLREHQLYAKLSKCEFW-LSEVKFLGHV----ISAKGVAVDPETVIAVTDWKQPKTVT 1112
Query: 257 QIQ 259
QI+
Sbjct: 1113 QIR 1115
>gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431331|gb|AAP53126.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1785
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 904 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 963
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+++ +Q + R
Sbjct: 964 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDIMIYSQSEEDHQHHLRLV 1021
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1022 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1048
>gi|322699332|gb|EFY91094.1| pol protein [Metarhizium acridum CQMa 102]
Length = 874
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 90 LKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L K + N + +P D + + + +DL AY + ++ H+ + Y
Sbjct: 250 LNKITIKNRYPLPLMTEIRDKVGKAKWFTTLDLKGAYNLIRMKEGHEWMTAFRTSRGHYE 309
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT 203
+PFGL +AP F ++ + I + LG+ V+VYLDD+L+ S L R
Sbjct: 310 YLVMPFGLTNAPATFQRMIDTILR--KQLGVFVVVYLDDILIY---SDTLEEHKRHVHEV 364
Query: 204 LQSLRWSVNLERSVLWPVQTCQY 226
LQ+L+ + +L CQ+
Sbjct: 365 LQTLQ-----DNKLLVEASKCQF 382
>gi|308486555|ref|XP_003105474.1| hypothetical protein CRE_22308 [Caenorhabditis remanei]
gi|308255440|gb|EFO99392.1| hypothetical protein CRE_22308 [Caenorhabditis remanei]
Length = 1279
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL++AY + I ++ L + LY LPFG+ SAP F ++ +
Sbjct: 463 LNGGKYFSQIDLAEAYLQIEIDEQAKQMLCINTHRGLYRYNRLPFGVKSAPGSFQQIMDS 522
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
+ + L V YLDD+++ + + ++ +Q V +E+
Sbjct: 523 MTSGLDG----VAAYLDDIIITGSSVAEHNQRLKTVMSRIQDFGLRVRIEKCTF 572
>gi|406700077|gb|EKD03262.1| retrotransposon nucleocapsid protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 1175
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L++ KIDL AY + I + + + + +PFGL +AP F L
Sbjct: 315 DQLRQAKVYSKIDLRGAYHLLRIAEGDEWKTAFRTKYGAFEYKVMPFGLTNAPASFQHLM 374
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N I + L + VIVYLDD+L+ +Q+ R R + L+ S E+
Sbjct: 375 NHI--FRDMLDISVIVYLDDILIFSQNETEHRGHVREVLRRLRENNLSAKPEKCEFH-TD 431
Query: 223 TCQYLGIMWNP 233
++LG + P
Sbjct: 432 RVEFLGFIVTP 442
>gi|308468863|ref|XP_003096672.1| hypothetical protein CRE_29108 [Caenorhabditis remanei]
gi|308241619|gb|EFO85571.1| hypothetical protein CRE_29108 [Caenorhabditis remanei]
Length = 1384
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL++AY + I ++ L + LY LPFG+ SAP F ++ +
Sbjct: 568 LNGGKYFSQIDLAEAYLQIEIDEQAKQMLCINTHRGLYRYNRLPFGVKSAPGSFQQIMDS 627
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
+ + L V YLDD+++ + + ++ +Q V +E+
Sbjct: 628 MTSGLDG----VAAYLDDIIITGSSVAEHNQRLKTVMSRIQDFGLRVRIEKCTF 677
>gi|115676944|ref|XP_001186691.1| PREDICTED: uncharacterized protein LOC754693 [Strongylocentrotus
purpuratus]
Length = 1453
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R + KIDL++ Y+ VP+ + + V D LY +PFGL +AP F+++
Sbjct: 1113 LSRAKYFTKIDLTKGYWQVPLTEEAKELTAFVTPDGLYQFRSMPFGLVNAPASFSRIMRV 1172
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ LR L V ++DD+L+
Sbjct: 1173 L---LRGL-HGVDNFIDDILI 1189
>gi|326484367|gb|EGE08377.1| hypothetical protein TEQG_08797 [Trichophyton equinum CBS 127.97]
Length = 365
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L + FL KI++ AY +PIR + + R
Sbjct: 191 YRGLNQITIKNRYPLPLISELLDRLLKAKFLGKINIRDAYTRIPIREKDRWMTAFRTRYG 250
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+ +PFGLA+AP F N I L L +VYLDD+L+
Sbjct: 251 YFEYCIMPFGLANAPTTFQAYINEIFADL--LDQFCVVYLDDILI 293
>gi|242022148|ref|XP_002431503.1| enzymatic polyprotein; Endonuclease; Reverse transcriptase,
putative [Pediculus humanus corporis]
gi|212516797|gb|EEB18765.1| enzymatic polyprotein; Endonuclease; Reverse transcriptase,
putative [Pediculus humanus corporis]
Length = 805
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGL 151
K+ + N + D L R + +DL+ + +P+ + + Y T +PFGL
Sbjct: 83 KYPIPNIEEILDQLGRSKYFTTLDLASGFHQIPLNDDDSKKTAFTTPFGHYEYTRMPFGL 142
Query: 152 ASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLG----NQDSVLLRS---QARAAVATL 204
+AP F +L N + + L+ G++ VYLDD+++ + + LR + R L
Sbjct: 143 KNAPATFQRLMNTVLSGLQ--GLQCFVYLDDIVIHAASIQEHEIKLRKIFDRLRLNNLKL 200
Query: 205 QSLRWSVNLERSVLWPVQTCQYLGIMWNP 233
Q + L R V++ T +G+ NP
Sbjct: 201 QPDKCEF-LRREVVYLGHTISDVGVRPNP 228
>gi|322695492|gb|EFY87299.1| pol protein [Metarhizium acridum CQMa 102]
Length = 868
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D + + + +DL AY + ++ H+ +
Sbjct: 529 YRHLNKITIKNRYPLPLMTEIRDKVGKAKWFTTLDLKGAYNLIRMKEGHEWMTAFRTSRG 588
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP F ++ + I + LG+ V+VYLDD+L+ S L R
Sbjct: 589 HYEYLVMPFGLTNAPATFQRMIDTILR--KQLGVFVVVYLDDILI---YSDTLEEHKRHV 643
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQY 226
LQ+L+ + +L CQ+
Sbjct: 644 HEVLQTLQ-----DNKLLVEASKCQF 664
>gi|110288682|gb|AAP52358.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1707
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 903 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 962
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 963 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQTEEDHQHHLRLV 1020
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1021 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1047
>gi|108709591|gb|ABF97386.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1200
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + + R L+ T + FGL +AP F L
Sbjct: 524 DQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLM 583
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ ++ + R + L+ + + W ++
Sbjct: 584 NKV--FMEFLDKFVVVFIDDILIYSKSEEEHKQHLRLVLEKLKEHQLYAKFSKCDFW-LK 640
Query: 223 TCQYLGIMWN 232
Q+LG + N
Sbjct: 641 EVQFLGHIVN 650
>gi|77556209|gb|ABA99005.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 923
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LL+ +DG++ + + +L + + N + +P D L+ KIDL Y +
Sbjct: 60 LLVKKKDGYERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLK 118
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY T + FGL +AP F L N I ++ L V+V++DD+L
Sbjct: 119 IRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKI--FMEFLDQFVVVFIDDIL 176
Query: 185 LGNQDS 190
+ +++
Sbjct: 177 IYSKNK 182
>gi|77555576|gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 919 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 978
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 979 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1036
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+ + L + W
Sbjct: 1037 LGKLREHQLYAKLSKCEFW 1055
>gi|357606157|gb|EHJ64935.1| hypothetical protein KGM_09682 [Danaus plexippus]
Length = 145
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 382 IPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGV 418
+PG N AD LSR K +P+WHLLP T+ IF + G+
Sbjct: 95 VPGNLNRIADCLSRGKPVPEWHLLPATTKAIFERMGI 131
>gi|50300539|gb|AAT73680.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + R LY T + FGL +AP F L
Sbjct: 640 DQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLM 699
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ +Q + R + L+ + L + W +
Sbjct: 700 NKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFW-LS 756
Query: 223 TCQYLG 228
++LG
Sbjct: 757 EVKFLG 762
>gi|34015329|gb|AAQ56519.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 867
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 429 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 488
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 489 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 546
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 547 LGKLREHQLYAKLSKCEFW-LSEVKFLG 573
>gi|326665990|ref|XP_003198169.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1224
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 137/351 (39%), Gaps = 71/351 (20%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 493 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 552
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L ++ + + S QTC
Sbjct: 553 I--FRDMLNKLVIVYIDDILVYSNSLSEHIQHVRAVLKRL--IQNQLYAKSSKCEFHQTC 608
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 609 ISFLGYIISPEGVAMDQQKVDSVTQWPHPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 668
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 669 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 728
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
L + + + + +E+ A+++ALE L+ K I +
Sbjct: 729 FLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 788
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L YIPG N AD+LSR
Sbjct: 789 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYIPGSKNIKADALSR 832
>gi|6425168|gb|AAC33526.2| pol polyprotein [Takifugu rubripes]
Length = 1187
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 153/392 (39%), Gaps = 84/392 (21%)
Query: 80 QDLGDRAFLSLKKFHLI---NHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R + +K + I N + +P + L K+DL AY V IR +
Sbjct: 323 EDGGLRPCIDFRKLNNITVKNKYPLPLMSSTFEPLTHARVFTKLDLRNAYHLVQIRKGDE 382
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQD 189
+ + +PFGL++AP VF +L N + LR++ + V+VYLDD+L+ ++
Sbjct: 383 WKTAFNTHLGHFEYLVMPFGLSNAPAVFQELVN---DVLRDMINVFVVVYLDDILIFSRT 439
Query: 190 SVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG------------------IMW 231
R + L R + E+ + + YLG + W
Sbjct: 440 MEEHHQHVRLVLQRLLENRLFIKAEKCIFH-SASVGYLGYIVEEGRVRADPAKIQAVVEW 498
Query: 232 NPTLDSKSLP--LEKQSTIQRYLLTLTQIQWWSVALHRSSPIF---PQAPQVF------- 279
D L L I+R++ +Q+ AL +S F P+A F
Sbjct: 499 PRPTDRTQLRRFLGFAGFIRRFIKGFSQVAAPLSALTSTSRPFAWTPEAETAFSALKDRF 558
Query: 280 ----------------VSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHIN 312
V DAS++G GA++ S + + + +
Sbjct: 559 TTAPVLAHPDPARQFIVEVDASDAGIGAVLSQRSEADQKIHPCAYFSRRFDPAERNYDVG 618
Query: 313 LKEMFAVRSALERKLPVLQDK--VVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLA 370
+E+ AV AL L+ L+ SD++ ++Y+ ++ K L + + L
Sbjct: 619 NRELLAVYGALVEWKHWLEGAKHPFLVWSDHKN-LTYV------RTAKRLNPRQGRWALF 671
Query: 371 VRHNITLMARYIPGKFNTWADSLSRQ--KELP 400
R + TL R PG N AD+LSRQ +E P
Sbjct: 672 SRFDFTLTFR--PGSKNIRADALSRQFPEEFP 701
>gi|326668984|ref|XP_003198907.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1690
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 149/384 (38%), Gaps = 84/384 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY + IR + +
Sbjct: 384 YRGLNDITIKNRYPLPLMSSAFELLQGAQVFTKLDLRNAYHLIRIREGDEWKTAFNTPTG 443
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNL-GMRVIVYLDDLLLGNQDSVLLRSQARA 199
+ LPFGL +AP VF L N + LR++ V VYLDD+L+ + + R
Sbjct: 444 HFEYRVLPFGLTNAPAVFQALVN---DVLRDMVNQFVFVYLDDILIFSPSMQVHTQHVRQ 500
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN-----------------PTLDSKSLPL 242
+ L + V E+ V ++ +LG + + PT DS+ L
Sbjct: 501 VLQRLLENQLFVKAEKCVFH-AKSVSFLGFVISAGEIKADPSKVRAVAEWPTPDSRKA-L 558
Query: 243 EK----QSTIQRYLLTLTQIQ--------------WWSVALHR---------SSPIF--- 272
++ + +R++ +QI W S A S+P+
Sbjct: 559 QRFLGFANFYRRFIRNFSQIAAPLTVLTSPKVPFIWGSKAQEAFDNLKSRFISAPVLSIP 618
Query: 273 -PQAPQVFVSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHINLKEMFAVR 320
P+ Q V DAS+ G GA++ S S + + I +E+ AVR
Sbjct: 619 DPKR-QFIVEVDASDVGVGAVLSQRSQRDEKVHPCAFFSHRLSPTERNYDIGNRELLAVR 677
Query: 321 SALERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITL 377
AL L+ V ++ +D++ + YI + K L +A + L R N TL
Sbjct: 678 LALGEWRHWLEGAVQPFVVWTDHKN-LEYI------STAKRLSSRQARWSLYFSRFNFTL 730
Query: 378 MARYIPGKFNTWADSLSRQKELPD 401
Y PG NT DSLSR P+
Sbjct: 731 --SYRPGSKNTKPDSLSRMFSAPE 752
>gi|427792993|gb|JAA61948.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1099
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL Y+ +P+ P + + V D L+ +PFGL +AP F +
Sbjct: 327 DCLHSASYFSSVDLRSGYWQIPMHPEDKEKTAFVTPDGLFEFNVMPFGLCNAPATFERFM 386
Query: 163 NWIANYLR-NLGMRVIVYLDDLLL 185
+ I L+ N+ M YLDD+++
Sbjct: 387 DTILRGLKWNICM---CYLDDVVI 407
>gi|32129325|gb|AAP73852.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 823
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
L + +DG + + SL + + N + +P D L+ KIDL Y +
Sbjct: 34 LFVKKKDGSMRMC-VDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLK 92
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + + R LY T + FGL +AP F L N + ++ L V+V++DD+L
Sbjct: 93 IRIADIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKV--FVDYLDKFVVVFIDDIL 150
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ ++D R + L+ + + W ++ +LG
Sbjct: 151 IYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFW-LKEVAFLG 193
>gi|326664007|ref|XP_003197709.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1230
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 142/352 (40%), Gaps = 74/352 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ F K+DL AY V ++ H+ + + + LPFGL++AP VF L N
Sbjct: 437 LQGASFFTKLDLRNAYHLVRMKQGHEWKTAFLTPRGHFEYCVLPFGLSNAPAVFQALVN- 495
Query: 165 IANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR++ + I VYLDD+L+ ++ R + L V E+ V Q+
Sbjct: 496 --DVLRDMIDQFIYVYLDDILIFSRSLQEHVQHVRRVLQRLLENGLFVKAEKCVFH-AQS 552
Query: 224 CQYLG---IMWNPTLDSKSL------PL-EKQSTIQRYL--------------------- 252
+LG + +D + + P+ E + +QR+L
Sbjct: 553 VPFLGHIVSVEGVRMDPEKIQAVVNWPIPESRKALQRFLGFANFYRRFIRNFSQLAAPLT 612
Query: 253 ---LTLTQIQWWSVA---------LHRSSPIF---PQAPQVFVSTDASNSGWGAIVDNHS 297
T +W SVA S+PI A Q V DAS G GAI+ +
Sbjct: 613 SLTSAKTAFRWSSVAQAAFTKLKGCFVSAPILVTPDPARQFVVEVDASEVGVGAILSQRA 672
Query: 298 -----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQTV 344
S + + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 673 ASDDRIHPCAFFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKN- 731
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L R + T+ Y PG NT D+LSR
Sbjct: 732 LEYI------RSAKRLNSRQARWALFFGRFDFTIS--YRPGSKNTKPDALSR 775
>gi|77554980|gb|ABA97776.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1406
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 693 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 752
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 753 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 810
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 811 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 841
>gi|326676761|ref|XP_003200671.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1165
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 142/352 (40%), Gaps = 74/352 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ F K+DL AY V ++ H+ + + + LPFGL++AP VF L N
Sbjct: 438 LQGASFFTKLDLRNAYHLVRMKQGHEWKTAFLTPRGHFEYCVLPFGLSNAPAVFQALVN- 496
Query: 165 IANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR++ + I VYLDD+L+ ++ R + L V E+ V Q+
Sbjct: 497 --DVLRDMIDQFIYVYLDDILIFSRSLQEHVQHVRRVLQRLLENGLFVKAEKCVFH-AQS 553
Query: 224 CQYLG---IMWNPTLDSKSL------PL-EKQSTIQRYL--------------------- 252
+LG + +D + + P+ E + +QR+L
Sbjct: 554 VPFLGHIVSVEGVRMDPEKVQAVVNWPIPESRKALQRFLGFANFYRRFIRNFSQLAAPLT 613
Query: 253 ---LTLTQIQWWSVA---------LHRSSPIF---PQAPQVFVSTDASNSGWGAIVDNHS 297
T +W SVA S+PI A Q V DAS G GAI+ +
Sbjct: 614 SLTSAKTPFRWSSVAQAAFTKLKGCFVSAPILVTPDPARQFVVEVDASEVGVGAILSQRA 673
Query: 298 -----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQTV 344
S + + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 674 ASDDRIHPCAFFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKN- 732
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L R + T+ Y PG NT D+LSR
Sbjct: 733 LEYI------RSAKRLNSRQARWALFFGRFDFTIS--YRPGSKNTKPDALSR 776
>gi|308446551|ref|XP_003087207.1| hypothetical protein CRE_01522 [Caenorhabditis remanei]
gi|308259780|gb|EFP03733.1| hypothetical protein CRE_01522 [Caenorhabditis remanei]
Length = 712
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
+G +IDL AY + + P Q+ + L+ +PFGL AP +F K+ + +
Sbjct: 386 KGKIFSQIDLKDAYLQIELDPEAQKLAVINTHLGLFKYKRMPFGLKPAPAIFQKVVDKLT 445
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQY 226
N L V YLDD+++ + + A L+ V+LE+ + ++
Sbjct: 446 NGLPG----VASYLDDIIVSAETMHEHEHILKLLFARLEEYGLKVSLEKCAFAKSEI-KF 500
Query: 227 LGIMWN 232
LG + N
Sbjct: 501 LGFIVN 506
>gi|20043037|gb|AAM08845.1|AC113337_9 Putative retroelement [Oryza sativa Japonica Group]
Length = 1728
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 924 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 983
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 984 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQTEEDHQHHLRLV 1041
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1042 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1068
>gi|38569150|emb|CAE03662.3| OSJNBa0042N22.4 [Oryza sativa Japonica Group]
Length = 1334
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 480 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 539
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 540 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLNKFVVVFIDDMLIYSKSEEEHEQHLRLV 597
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 598 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHVVN 628
>gi|38347241|emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa Japonica Group]
Length = 1466
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 681 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 740
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 741 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 798
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 799 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 829
>gi|38344617|emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa Japonica Group]
gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza sativa Japonica Group]
Length = 1471
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 590 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 649
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 650 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 707
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 708 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 738
>gi|326670230|ref|XP_003199169.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Danio rerio]
Length = 1153
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 150/392 (38%), Gaps = 76/392 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 342 LRSAQYFTKLDLRSAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 401
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + L VIVY+DD+L+ + RA + L + + + S QTC
Sbjct: 402 I--FRDMLNKWVIVYIDDILIYSNSLSEHIQHVRAVLERL--IENQLYAKSSKCEFHQTC 457
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 458 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 517
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 518 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFVVEIDASNTGIGAILSQR 577
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQD-KVVLIQSDNQTV 344
SL + + + + +E+ A+++ALE L+ K I +
Sbjct: 578 SLVNKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFIVITDHKN 637
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR-----QKEL 399
+ YI +S K L +A + L YI G N AD+LSR E
Sbjct: 638 LEYI------RSCKRLNPRQARWALFFTR-FDFQVTYISGSKNIKADALSRLSDDETSET 690
Query: 400 PDWHLLPEVTQHIFAQWGVPEIDLFATANSAA 431
PD ++ QW + + L A N+ +
Sbjct: 691 PDEPIIKSPLIVAPIQWDIDQEILQAAENNPS 722
>gi|326665097|ref|XP_003197966.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1413
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 120/314 (38%), Gaps = 71/314 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + +L K + N + +P + LQ+ K+DL AY V I+
Sbjct: 552 GKKDGGLRPCIDYRALNKVTIRNRYPLPLMATAFELLQKATIFSKLDLRNAYHLVRIKQG 611
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + Y +PFGL +AP VF L N + + L V VYLDD+L+ +
Sbjct: 612 DEWKTAFNTPTGHYEYLVMPFGLTNAPAVFQALINDVLREM--LNKFVFVYLDDILIFSS 669
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSL----- 240
S R + LQ V E+ + +LG + P +D K +
Sbjct: 670 SLQEHESHVRKVLRRLQENHLFVKPEKCEFHTTEVL-FLGFIIKPGQVQMDPKKVQAVLD 728
Query: 241 -PLEKQ-STIQRY--------------------LLTLTQ-----IQWWSVA------LHR 267
P +QR+ L LT+ I W A L R
Sbjct: 729 WPAPTSVKEVQRFIGFANFYRKFVQNFSSVVAPLTALTKVGSARISWNPEAEAAFRELKR 788
Query: 268 ---SSPIF----PQAPQVFVSTDASNSGWGAIVDNHS----------LGGVWSDHQEMWH 310
S+PI P+ P V V DAS+ G GA++ L S + +H
Sbjct: 789 RFTSAPILTIPNPELPFV-VEVDASDVGVGAVLSQRGKDNCLHPCAFLSHRLSSCERNYH 847
Query: 311 INLKEMFAVRSALE 324
+ +E+ AV+ ALE
Sbjct: 848 VGDRELLAVKLALE 861
>gi|449672269|ref|XP_004207675.1| PREDICTED: uncharacterized protein LOC101237757 [Hydra
magnipapillata]
Length = 647
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 100 RVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFA 159
++ ++ + G+ L IDL +AY + + + ++ V Y YC+T L FGL AP++
Sbjct: 197 KLRNWRKLGENLEIIDLKKAYLQIRVDEALWKYQVVEYEGQRYCLTRLGFGLNVAPRIMT 256
Query: 160 KLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
K+ + + + +G ++DD+++ N R Q L S + + +W
Sbjct: 257 KILKKVLSIDKIVGSGTDSFIDDIIVNNNIVSSCRVQELLKKYGLDS---KLPEKLVAIW 313
Query: 220 PVQTCQYL-----GIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQ 274
+C YL W+ ++ + + L + S +R W+V + ++
Sbjct: 314 LRPSCSYLKRVSSSCGWDTLVNDRVVKLVR-SLNERLTKEDPVHGSWNVKNTSEATVWRD 372
Query: 275 APQVFVSTDASNSGWGAIVDNHSLGGVWSDHQ-EMWHINLKEMFAVRSALERKLPVLQDK 333
A + V + G IV++ S W Q + HINL E+ AV + +
Sbjct: 373 ASSLAVGIVLEVA--GEIVEDCS----WLRKQDDAAHINLAELEAVIKGINLATK-WGFE 425
Query: 334 VVLIQSDNQTVVSYI 348
+ I+ D+ TVV ++
Sbjct: 426 CITIKCDSATVVGWL 440
>gi|88595541|gb|ABD43077.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILI 108
>gi|340386408|ref|XP_003391700.1| PREDICTED: uncharacterized protein K02A2.6-like, partial
[Amphimedon queenslandica]
Length = 702
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 100 RVPDF---LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
RV D + G K+DL+ AY + + P +++ ++ L+ LPFG++SAP
Sbjct: 171 RVEDLFTAMSGGTLFTKLDLTHAYQQLRLSPESKKYTTINTSKGLFHYERLPFGISSAPG 230
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERS 216
+F + I L++L V+ Y+DDLL+ + + L+S V L+RS
Sbjct: 231 IFQRT---IETLLKDLP-GVVAYIDDLLVTGSNKEQHLQNLDRVMTRLESA--GVTLKRS 284
Query: 217 -VLWPVQTCQYLG 228
++ + +YLG
Sbjct: 285 KCVFLTPSVEYLG 297
>gi|326680633|ref|XP_003201579.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1165
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 143/352 (40%), Gaps = 74/352 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ F K+DL AY V ++ H+ + + + LPFGL++AP VF L N
Sbjct: 438 LQGASFFTKLDLRNAYHLVRMKQGHEWKTAFLTPRGHFEYCVLPFGLSNAPAVFQALVN- 496
Query: 165 IANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR++ + I VYLDD+L+ ++ R + L V E+ V Q+
Sbjct: 497 --DVLRDMIDQFIYVYLDDILIFSRSLQEHVQHIRRVLQRLLENGLFVKAEKCVFH-AQS 553
Query: 224 CQYLG---IMWNPTLDSKSL------PL-EKQSTIQRYL--------------------- 252
+LG + +D + + P+ E + +QR+L
Sbjct: 554 VPFLGHIVSVEGVRMDPEKVQAVVNWPISEARKALQRFLGFANFYRRFIRNFSQLAAPLT 613
Query: 253 ---LTLTQIQWWSVA---------LHRSSPIF---PQAPQVFVSTDASNSGWGAIVDNHS 297
T +W SVA S+PI A Q V DAS G GAI+ +
Sbjct: 614 SLTSAKTPFRWSSVAQAAFTKLKGCFVSAPILVTPDPARQFVVEVDASEVGVGAILSQRA 673
Query: 298 LGG-----------VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQTV 344
+ S + + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 674 VSDDRIHPCAFFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKN- 732
Query: 345 VSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L R + T+ Y PG NT D+LSR
Sbjct: 733 LEYI------RSAKRLNSRQARWALFFGRFDFTIS--YRPGSKNTRPDALSR 776
>gi|326663957|ref|XP_003197697.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1142
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 137/354 (38%), Gaps = 77/354 (21%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ + K+DL AY + IR + D Y +PFGLA++P VF N
Sbjct: 422 LRSAQYFTKLDLRGAYNLIRIRQGDEWKTGFSTIDGHYEYLVMPFGLANSPSVFQAFVNE 481
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L VIVY+DD+L+ + RA + L + + + QTC
Sbjct: 482 V--FRDMLNKWVIVYIDDILVYSNSLSEHIQYVRAVLERLIQNQLYAKISKCEFH--QTC 537
Query: 225 -QYLGIMWNP---TLDSKSLPLEKQ-------STIQRYL-------------------LT 254
+LG + +P +D + + Q +QR+L LT
Sbjct: 538 ISFLGYIISPEGVAMDQQKVDSVTQWPQPETIRQLQRFLGFANFYRRFIRNFSSVAAPLT 597
Query: 255 L------TQIQWWSVALH---------RSSPIF--PQAPQVF-VSTDASNSGWGAIVDNH 296
+++W A+ S+PI P Q F V DASN+G GAI+
Sbjct: 598 AMVKANNARLKWNPDAVRAFTQLKTRFSSAPILRHPDPEQPFIVEIDASNTGIGAILSQR 657
Query: 297 SL-----------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK----VVLIQSDN 341
SL + + + + +E+ A+++ALE L+ V+ N
Sbjct: 658 SLVTKKLHPCAFYSRKLNSAERNYDVGNRELLAMKAALEEWRHWLEGAKHPFTVITDHKN 717
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L + YIPG N AD+LSR
Sbjct: 718 ---LEYI------RSCKRLNPRQARWALFFTR-FDFLVTYIPGSKNIKADALSR 761
>gi|147810924|emb|CAN71786.1| hypothetical protein VITISV_031912 [Vitis vinifera]
Length = 852
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + + +P D L R + K+DL Y+ V I + + V R +
Sbjct: 472 YRALNKVTVKKKYPIPLIADLFDQLGRARYFTKLDLRSRYYQVRIAEGDELKTTCVTRYS 531
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+PFGL +AP F L N I +L L V+VYLDD+++
Sbjct: 532 SCKFLVMPFGLTNAPTKFYTLMNKI--FLPYLDKFVVVYLDDIVI 574
>gi|16905208|gb|AAL31078.1|AC091749_7 putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|38346969|emb|CAE02265.2| OSJNBb0049I21.5 [Oryza sativa Japonica Group]
Length = 1644
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 688 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYG 747
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L ++V++DD+L+ ++D R
Sbjct: 748 LYKFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFMVVFIDDILIYSKDEEEHAEHLRLV 805
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 806 LEKLRKHKLYAKFSKCEFW-LKEVAFLG 832
>gi|57834100|emb|CAE04765.3| OSJNBa0079C19.6 [Oryza sativa Japonica Group]
Length = 1998
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 879 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 938
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 939 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 996
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 997 LRKLREHQLYAKLSKCEFW-LSEVKFLG 1023
>gi|384484729|gb|EIE76909.1| hypothetical protein RO3G_01613 [Rhizopus delemar RA 99-880]
Length = 877
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 292 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 351
Query: 171 NLGMRVIVYLDDLLLGN-QDSVLLRSQARAAV 201
N V VY+DD+L+G DS+ QA +AV
Sbjct: 352 N----VHVYVDDILIGTPGDSMEKHYQAVSAV 379
>gi|113205348|gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
Length = 4543
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 145/368 (39%), Gaps = 68/368 (18%)
Query: 85 RAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYR 138
+ + L K + N + +P D LQ KIDL Y + +R + R
Sbjct: 494 KDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTR 553
Query: 139 DTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQAR 198
Y + FGL +AP F L N + + L M VIV++DD+L+ +++ S R
Sbjct: 554 YGHYEFLVMSFGLTNAPAAFMDLMNRV--FKPYLDMFVIVFIDDILIYSRNEGDHASHLR 611
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTCQYLGIM----------W------------NPTLD 236
+ TL+ + W +++ +LG + W +PT
Sbjct: 612 TVLQTLKDKELYAKFSKCEFW-LKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEI 670
Query: 237 SKSLPL--------EKQSTIQRYLLTLTQIQ---WWSVALHRS----------SPI--FP 273
L L E STI L LTQ WS A +S +P+ P
Sbjct: 671 RSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKLQWSEACEKSFQELKKRLTTAPVLTLP 730
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHSLGGVWSD-----HQEMWHINLKEMFAVRSALERKL 327
+ Q F V DAS G G ++ + ++ H++ + + E+ AV AL+
Sbjct: 731 EGTQGFVVHCDASRVGLGCVLMQNDKVIAYASRQLKAHEKNYPTHDLELAAVVFALKIWR 790
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
L V I +D++++ + ++ + + R +E L D L Y PGK N
Sbjct: 791 HYLYGVHVDIFTDHKSLQYVLTQK--ELNLRQRRWLELLKDY------VLSILYHPGKAN 842
Query: 388 TWADSLSR 395
ADSLSR
Sbjct: 843 VVADSLSR 850
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 145/368 (39%), Gaps = 68/368 (18%)
Query: 85 RAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYR 138
+ + L K + N + +P D LQ KIDL Y + +R + R
Sbjct: 2004 KDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTR 2063
Query: 139 DTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQAR 198
Y + FGL +AP F L N + + L M VIV++DD+L+ +++ S R
Sbjct: 2064 YGHYEFLVMSFGLTNAPAAFMDLMNRV--FKPYLDMFVIVFIDDILIYSRNEGDHASHLR 2121
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTCQYLGIM----------W------------NPTLD 236
+ TL+ + W +++ +LG + W +PT
Sbjct: 2122 TVLQTLKDKELYAKFSKCEFW-LKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEI 2180
Query: 237 SKSLPL--------EKQSTIQRYLLTLTQIQ---WWSVALHRS----------SPI--FP 273
L L E STI L LTQ WS A +S +P+ P
Sbjct: 2181 RSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKLQWSEACEKSFQELKKRLTTAPVLTLP 2240
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHSLGGVWSD-----HQEMWHINLKEMFAVRSALERKL 327
+ Q F V DAS G G ++ + ++ H++ + + E+ AV AL+
Sbjct: 2241 EGTQGFVVHCDASRVGLGCVLMQNDKVIAYASRQLKAHEKNYPTHDLELAAVVFALKIWR 2300
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
L V I +D++++ + ++ + + R +E L D L Y PGK N
Sbjct: 2301 HYLYGVHVDIFTDHKSLQYVLTQK--ELNLRQRRWLELLKDY------VLSILYHPGKAN 2352
Query: 388 TWADSLSR 395
ADSLSR
Sbjct: 2353 VVADSLSR 2360
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 145/368 (39%), Gaps = 68/368 (18%)
Query: 85 RAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYR 138
+ + L K + N + +P D LQ KIDL Y + +R + R
Sbjct: 3514 KDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTR 3573
Query: 139 DTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQAR 198
Y + FGL +AP F L N + + L M VIV++DD+L+ +++ S R
Sbjct: 3574 YGHYEFLVMSFGLTNAPAAFMDLMNRV--FKPYLDMFVIVFIDDILIYSRNEGDHASHLR 3631
Query: 199 AAVATLQSLRWSVNLERSVLWPVQTCQYLGIM----------W------------NPTLD 236
+ TL+ + W +++ +LG + W +PT
Sbjct: 3632 TVLQTLKDKELYAKFSKCEFW-LKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEI 3690
Query: 237 SKSLPL--------EKQSTIQRYLLTLTQIQ---WWSVALHRS----------SPI--FP 273
L L E STI L LTQ WS A +S +P+ P
Sbjct: 3691 RSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKLQWSEACEKSFQELKKRLTTAPVLTLP 3750
Query: 274 QAPQVF-VSTDASNSGWGAIVDNHSLGGVWSD-----HQEMWHINLKEMFAVRSALERKL 327
+ Q F V DAS G G ++ + ++ H++ + + E+ AV AL+
Sbjct: 3751 EGTQGFVVHCDASRVGLGCVLMQNDKVIAYASRQLKAHEKNYPTHDLELAAVVFALKIWR 3810
Query: 328 PVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFN 387
L V I +D++++ + ++ + + R +E L D L Y PGK N
Sbjct: 3811 HYLYGVHVDIFTDHKSLQYVLTQK--ELNLRQRRWLELLKDY------VLSILYHPGKAN 3862
Query: 388 TWADSLSR 395
ADSLSR
Sbjct: 3863 VVADSLSR 3870
>gi|18652524|gb|AAL77157.1|AC091732_8 Putative polyprotein [Oryza sativa Japonica Group]
gi|31431769|gb|AAP53495.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1839
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 958 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 1017
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1018 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1075
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+ + L + W
Sbjct: 1076 LGKLREHQLYAKLSKCEFW 1094
>gi|307196222|gb|EFN77869.1| hypothetical protein EAI_03230 [Harpegnathos saltator]
Length = 103
Score = 49.3 bits (116), Expect = 0.005, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 280 VSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQS 339
+ +DAS +GWGA + + G W+ + HIN E+ A AL+ L + +L++
Sbjct: 1 IFSDASLTGWGASCADQRIHGWWTKEDQSLHINALELKAAFYALKCFAAHLHNCNILLRI 60
Query: 340 DNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYI 382
DN T +SYI+K G + L ++ +I L A YI
Sbjct: 61 DNTTALSYINKFGSVQHPVLSDITRQIWQWCEERHIYLFASYI 103
>gi|62733353|gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|108864030|gb|ABA91610.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1441
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 644 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 703
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 704 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 761
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 762 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 792
>gi|50878352|gb|AAT85127.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|38345904|emb|CAE03548.2| OSJNBa0060D06.14 [Oryza sativa Japonica Group]
Length = 1458
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|32487596|emb|CAE04482.1| OSJNBa0029L02.23 [Oryza sativa Japonica Group]
Length = 1514
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 132/323 (40%), Gaps = 57/323 (17%)
Query: 89 SLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
+L + + N + +P D L+ KIDL Y + IR + R LY
Sbjct: 756 ALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLLIREEDIPKAAFTTRYGLY 815
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVA 202
T + FGL +AP F L N + ++ L V+V++DD+L+ +Q +
Sbjct: 816 EFTVMSFGLTNAPAFFMNLVNKV--FMEYLDKFVVVFIDDILVYSQSEI----------- 862
Query: 203 TLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEK---QSTIQRYLLTLTQIQ 259
+W ++C + M P+L S EK ++ TL +
Sbjct: 863 --------------SVWCWESCGNINCM--PSLASLLKKEEKFVWSPQCEKAFQTLKEKL 906
Query: 260 WWSVALHRSSPIFPQAPQVF-VSTDASNSGWGAIV--DNHSLGGVWSD---HQEMWHINL 313
S L I P + F V DAS G G ++ + H + H+ + +
Sbjct: 907 VSSPVL-----ILPDTRKDFLVYCDASRQGLGCVLMQEGHVVAYATRQLRPHEGNYPTHD 961
Query: 314 KEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRH 373
E+ AV AL+ L I +D+++ + YI T+S LR+ L +L +
Sbjct: 962 LELAAVVHALKIWRHYLIGNCCEICTDHKS-LKYIF----TQSDLNLRQRRWL-ELIKDY 1015
Query: 374 NITLMARYIPGKFNTWADSLSRQ 396
++ + Y PGK N AD+LSR+
Sbjct: 1016 DVGI--HYHPGKANVVADALSRK 1036
>gi|62082802|gb|AAX62229.1| reverse transcriptase [Sciadopitys verticillata]
Length = 111
Score = 49.3 bits (116), Expect = 0.005, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L+ F KIDL Y VPI P+ + ++
Sbjct: 10 YRALNKITVKNRYPIPWIYDLLDQLRGAKFFTKIDLKSGYHQVPIEPADIWKTAFKSKEG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
L+ +PFGL +A F ++ N I + V+VYLDDLL
Sbjct: 70 LFEWLVMPFGLTNALATFMRMMNDILRPFTD--SFVVVYLDDLL 111
>gi|116309457|emb|CAH66529.1| H0502B11.9 [Oryza sativa Indica Group]
Length = 1450
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 569 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLQSGYHQLRIREEDIPKTAFITRYG 628
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 629 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 686
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 687 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 717
>gi|48843822|gb|AAT47081.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|340384158|ref|XP_003390581.1| PREDICTED: uncharacterized protein K02A2.6-like [Amphimedon
queenslandica]
Length = 1302
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G K+DLS AY + + ++ ++ L+ LPFG+ASAP +F +
Sbjct: 517 LSGGTIFSKLDLSHAYQQIMVHEDSCKYTTINTSKGLFQYQRLPFGIASAPAIFQRTMET 576
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + + V+VY+DD+L+ +D + L+ ++ + + V +
Sbjct: 577 LLHDISG----VVVYIDDILVSGKDETSHLQNLDLVMERLEQAGLTLK-QSKCTYAVSSV 631
Query: 225 QYLG 228
+YLG
Sbjct: 632 EYLG 635
>gi|88595655|gb|ABD43134.1| reverse transcriptase [Orobanche ramosa]
Length = 143
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YQELNKETIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQIRVKESDVPKTAFRTRYE 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILI 108
>gi|38346970|emb|CAD39728.2| OSJNBb0049I21.6 [Oryza sativa Japonica Group]
Length = 1606
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 531 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYG 590
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 591 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLV 648
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 649 LEKLRKHKLYAKFSKCEFW-LKELAFLG 675
>gi|62733354|gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|108864031|gb|ABG22378.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1441
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 644 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 703
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 704 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 761
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 762 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 792
>gi|327268874|ref|XP_003219220.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Anolis carolinensis]
Length = 533
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L +G K+DL +AYF V I+ + + + LPFGL+ AP VF +L N
Sbjct: 333 LSKGKIFTKLDLREAYFRVRIKEGDEWKTAFNCPLGQFQYKVLPFGLSGAPGVFMQLINE 392
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR 208
+ G V+VYLDD+L+ +++ + R LQ LR
Sbjct: 393 TLHPFLYKG--VLVYLDDILIMSEN---MGDHIRLVQQVLQKLR 431
>gi|88595515|gb|ABD43064.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNKV--FIEYLDKFVVVFIDDILI 108
>gi|50080333|gb|AAT69667.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|427791991|gb|JAA61447.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1140
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
+IDL + Y+ VP++ ++F + V +Y LPFG ++ F KL N + N +
Sbjct: 472 RIDLCKGYWQVPLKEETKKFTAFVTPFDIYEYNRLPFGWKNSGAWFQKLMNSVLNDY--I 529
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
G VY+DD+++ ++ + L + +N+++S + QT +LG ++N
Sbjct: 530 GKFCNVYVDDIIVYSRTKEDHIQHLSDVLEALSRAKLKINVKKSEFF-CQTVVFLGRVFN 588
Query: 233 PTLDSKSLPLEKQSTIQR 250
S K+ ++QR
Sbjct: 589 GKTKST-----KEESVQR 601
>gi|427791841|gb|JAA61372.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1116
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL Y+ +P+ P + + V D LY +PFGL +AP F +
Sbjct: 347 DCLHSASYFSSVDLRSGYWQIPMDPVDKEKTAFVTPDGLYEFNVMPFGLCNAPATFERFM 406
Query: 163 NWIANYLRNLGMRV-IVYLDDLLL 185
+ I LR+L + + YLDD+++
Sbjct: 407 DTI---LRSLKWEICMCYLDDVVI 427
>gi|406864719|gb|EKD17763.1| polymerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1453
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 144/366 (39%), Gaps = 54/366 (14%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
+ + KID+ QA+ + I + + R Y LPFGL + P F + N
Sbjct: 762 ISQAKIFTKIDIQQAFHRIRISLESEDLTTFRSRYGTYKYKVLPFGLTNRPATFQRFINE 821
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
I + +L YL+D+L+ + + + + + L ++++ + V
Sbjct: 822 I--LIEHLDDFCSAYLNDILIYSTNELEHTEHVKKIMRILNDHGLQADIKK-CEFSVYKT 878
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDA 284
++L + N + + ++ + L L Q + H F Q + TD+
Sbjct: 879 KFLKFIIN----TNDIEVDPDKIADKLKLAL---QHAPILCH-----FDPYKQTRLETDS 926
Query: 285 SNSGWGAIVDNHSLGGVW----------SDHQEMWHINLKEMFAV-RSALERKLPVL-QD 332
S+S +++ G + +D + + I+ KE+ A+ RS KL +L
Sbjct: 927 SDSVVTSVLSQLQDDGFYHPVEFFSKTMTDAKLNYPIHDKELLAIFRSFQNYKLELLGSQ 986
Query: 333 KVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADS 392
K + + +D++T+ ++ + T E A N + Y G NT AD+
Sbjct: 987 KSIHVYTDHRTLEYFMTTKDLTARQARWAEFFA--------NFHFLIMYRSGATNTLADA 1038
Query: 393 LSR-----------------QKELPDWHLLPEVTQHIFAQWGVPEIDL--FATANSAAFL 433
LSR Q+ LP+ L P+V Q + P +L ++ N + +
Sbjct: 1039 LSRRDQDISPLKARQRAVKKQQLLPNKKLSPKVLQDLHELSSDPPAELAKYSVINDSVHV 1098
Query: 434 VQGGPL 439
VQ P+
Sbjct: 1099 VQSIPV 1104
>gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza sativa Japonica Group]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|340385330|ref|XP_003391163.1| PREDICTED: hypothetical protein LOC100633740, partial [Amphimedon
queenslandica]
Length = 449
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + +F+ +DL++ Y+ VP+ + + LY +PFGL+ AP F ++
Sbjct: 340 DTIGDAEFITTLDLAKGYWQVPVNEKDREKTAFTSPRGLYQFKTMPFGLSGAPATFQRMM 399
Query: 163 NWIANYLRNLGMRVIVYLDDLLL 185
+ I LR VYLDD+++
Sbjct: 400 DEI---LRGTETFAGVYLDDIVI 419
>gi|291231400|ref|XP_002735652.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 572
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 135/359 (37%), Gaps = 73/359 (20%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G L K+D+ A+ P+R L + Y LPFGL SAP +F ++ +
Sbjct: 186 GSLLAKVDIQHAFRLCPVRKQDWHLLGFKWDGHYYFDRVLPFGLRSAPFLFNRIATALEW 245
Query: 168 YLRNLGMR--VIVYLDD-LLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+R+ +I YLDD L +G + + + T +L V + V P
Sbjct: 246 VVRHQAKTSDIIHYLDDFLAVGPPNHQSCQRSKDIILNTCSTLGIPVAANK-VEGPSSII 304
Query: 225 QYLGIMWNPTLDSKSLPLEKQSTI--------------QRYLLTLT-------------- 256
+LG+ + LP +K I +R LL+L
Sbjct: 305 TFLGVELDTVDMVIRLPADKLENILSAIPLWANRYHCSKRELLSLIGTLSFACKCVPAGR 364
Query: 257 ----------------------------QIQWWSVAL---HRSSPIFPQA----PQVFVS 281
+QWW L + S+ I + P + +
Sbjct: 365 LFLRRMIDLATTASSINQIIVLSNDFRLDLQWWWEFLPNWNGSARILATSWCLTPNMNLY 424
Query: 282 TDASNS-GWGAIVDNHSLGGVWSDHQEMWH----INLKEMFAVRSALERKLPVLQDKVVL 336
TDAS+ GA + WS + + I KE+F + + + + ++
Sbjct: 425 TDASSVIACGAFYNKQWFTLPWSPDKCSINPPLSIEWKELFPILISCLIWGHLWHGQKIM 484
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
DN+ +V+ I K+G ++ +++ V A+F A N +M +I G N+ ADSLSR
Sbjct: 485 FHCDNEAIVN-IWKKGTSRCQRIMSLVRAIFFTAANGNFHVMIAHIRGTNNSIADSLSR 542
>gi|162568712|gb|ABY19379.1| hypothetical protein [Paracoccidioides brasiliensis]
Length = 212
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + K+D+ Q + + + P + + R Y +PFGL +AP F +
Sbjct: 2 DRLNGAKYFTKLDIRQGFHRIRMDPESEDLTTFRTRYGTYKYRVVPFGLTNAPACFQRFV 61
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N I + L + ++DDLL+ +++ + Q + + L++ ++++ + VQ
Sbjct: 62 NSI--FFDYLDKFMTAFMDDLLIYSKNLEEHKQQVNSVLDRLKTAGLQASIQK-CEFAVQ 118
Query: 223 TCQYLGIM 230
+YLG +
Sbjct: 119 RTKYLGFI 126
>gi|77554814|gb|ABA97610.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1030
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
L + +DG + + SL + + N + +P D L+ KIDL Y +
Sbjct: 279 LFVKKKDGSMRMC-VDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRLGYHQLK 337
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDL 183
IR + R LY T + FGL +AP F L N + +YL V+V++DD+
Sbjct: 338 IRTGDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLEKF---VVVFIDDI 394
Query: 184 LLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
L+ ++D R + L+ + + W ++ +LG
Sbjct: 395 LIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFW-LKEVAFLG 438
>gi|41469527|gb|AAS07293.1| putative retrotransposon polyprotein [Oryza sativa Japonica Group]
gi|108708989|gb|ABF96784.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 671
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR ++ R
Sbjct: 391 YRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKIAFTTRYG 450
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 451 LYECTVMSFGLTNAPTFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 508
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ LQ + + W + ++LG
Sbjct: 509 LEKLQEHQLYAKFSKGDFW-LSEVKFLG 535
>gi|110288739|gb|AAP52510.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1416
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 618 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 677
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 678 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 735
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 736 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 766
>gi|38346425|emb|CAD40212.2| OSJNBa0019J05.10 [Oryza sativa Japonica Group]
Length = 1525
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 644 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 703
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 704 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 761
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 762 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 792
>gi|384485337|gb|EIE77517.1| hypothetical protein RO3G_02221 [Rhizopus delemar RA 99-880]
Length = 963
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 848 IFTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDL 907
Query: 170 RNLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 908 SN----VHVYVDDIVIGTTGDSMEKHYQAVSAV 936
>gi|339245141|ref|XP_003378496.1| putative integrase core domain protein [Trichinella spiralis]
gi|316972586|gb|EFV56259.1| putative integrase core domain protein [Trichinella spiralis]
Length = 1042
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
++ ++G + IDL +AY + I S + +VV++ YC+T L FGL AP V +
Sbjct: 331 EWRRQGVNVALIDLKKAYLQIRIDKSLWPYQTVVFKGKRYCLTRLGFGLNVAPLVMKAVL 390
Query: 163 NWIANYLRNLGMRVIVYLDDLLL 185
N + + ++ R Y+DD+L+
Sbjct: 391 NCVLSRDPDVRKRTSAYIDDILV 413
>gi|54287627|gb|AAV31371.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + R LY T + FGL +AP F L
Sbjct: 961 DQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLM 1020
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ +Q + R + L+ + L + W +
Sbjct: 1021 NKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFW-LS 1077
Query: 223 TCQYLG 228
++LG
Sbjct: 1078 EVKFLG 1083
>gi|88595721|gb|ABD43167.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L+ KIDL Y + IR +
Sbjct: 6 YRELNRLTVKNKYPLPRIEDLFDQLRGAGIFSKIDLRSGYHQLKIRECDIPKTAFRTHYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +PFGL++AP VF L N + + L VIV++DD+L+ ++D R R A
Sbjct: 66 HFEFVVMPFGLSNAPAVFMDLMNRV--FQPYLDKFVIVFIDDILVYSKDEEQHREHLRIA 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ TL+ + ++ W
Sbjct: 124 LETLRKEKLYAKFKKCEFW 142
>gi|77554144|gb|ABA96940.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1112
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 431 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 490
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 491 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 548
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 549 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 579
>gi|22725995|gb|AAN04995.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1413
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 615 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 674
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 675 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 732
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 733 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 763
>gi|116309242|emb|CAH66331.1| H0813E03.8 [Oryza sativa Indica Group]
Length = 815
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 128/321 (39%), Gaps = 39/321 (12%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 49 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 108
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 109 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLV 166
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRYLLTLTQIQW 260
+ L+ + L R + + ++LG + + +K + ++ + T+T +
Sbjct: 167 LGKLREHQLYAKL-RKCEFCLSEVKFLGHV----ISAKGVAVDPK--------TVTAVTD 213
Query: 261 W----SVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEM 316
W +V RS + F+ + + + VWS E LKE
Sbjct: 214 WKQPKTVTQVRSFLGLAGYYRRFIENFSKIAQPMTQLLKKEEKFVWSPQCEKAFQTLKEK 273
Query: 317 FAVRSALERKLP-VLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNI 375
L LP +D +V + Q + + +EG + R +E + D VR
Sbjct: 274 LVSSPVL--ILPDTRKDFLVYCDASRQGLGRVLMQEGHVR-----RWLELIKDYDVR--- 323
Query: 376 TLMARYIPGKFNTWADSLSRQ 396
Y PGK N AD LSR+
Sbjct: 324 ---IHYHPGKANVVADPLSRK 341
>gi|110289611|gb|AAP55099.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1565
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 684 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 743
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 744 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKIVVVFIDDILIYSKSEEEHEQHLRLV 801
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 802 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 832
>gi|38567665|emb|CAE75948.1| B1159F04.11 [Oryza sativa Japonica Group]
Length = 1679
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 897 YRALNEVTIKNKYPLPRIDDLFDQLKGTTVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 956
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 957 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1014
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1015 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1041
>gi|339261016|ref|XP_003368110.1| putative integrase core domain protein [Trichinella spiralis]
gi|316965287|gb|EFV50041.1| putative integrase core domain protein [Trichinella spiralis]
Length = 936
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ G K+DL +AY V + ++ L + LY LPFG+ASAP +F ++ +
Sbjct: 452 LRGGKTFTKLDLLEAYIQVELDEESKKILVINTHKGLYYYNRLPFGVASAPAIFQQVMDT 511
Query: 165 IANYLRNLGMRVIVYLDDLLL-GNQDSVLLRS 195
+ + N V YLDD++L G D R+
Sbjct: 512 MLAGIPN----VAAYLDDIILTGATDDEYRRT 539
>gi|154283813|ref|XP_001542702.1| hypothetical protein HCAG_02873 [Ajellomyces capsulatus NAm1]
gi|150410882|gb|EDN06270.1| hypothetical protein HCAG_02873 [Ajellomyces capsulatus NAm1]
Length = 1164
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ KIDL AY+ + I + + R Y +P GL +AP F
Sbjct: 389 DRLQNAIIFSKIDLRDAYYRIRIAEGDEWKTAFRTRYGSYEFRVMPMGLCNAPATFQSYI 448
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + L + + IVYLDD+L+ +Q++ R L+ R + + +
Sbjct: 449 NEVLKGL--VDICCIVYLDDILIYSQNTEDHTKHLRLIFERLRKYRLYAKESKCTFFTTE 506
Query: 223 TCQYLGIMWNPT 234
++LG + +PT
Sbjct: 507 -VEFLGYIVSPT 517
>gi|308484320|ref|XP_003104360.1| hypothetical protein CRE_22892 [Caenorhabditis remanei]
gi|308258008|gb|EFP01961.1| hypothetical protein CRE_22892 [Caenorhabditis remanei]
Length = 1386
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G + +IDL++AY + + + L + LY LPFG+ SAP +F +L + + N
Sbjct: 573 GKYFTQIDLAEAYLQMELSDDSKELLCINTHKGLYQFNRLPFGVKSAPGIFQQLMDQLIN 632
Query: 168 YLRNLGMRVIVYLDDLLL 185
+ V YLDD+++
Sbjct: 633 GIEG----VASYLDDVIV 646
>gi|307202550|gb|EFN81895.1| Uncharacterized protein F44E2.2 [Harpegnathos saltator]
Length = 1389
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 50/103 (48%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K+D++QAY+ +P+ + +++ + Y LPFG+ +A F + L
Sbjct: 945 KLDITQAYWQIPLTANSRQYTGFSFDHQTYIFERLPFGIKTAGASFTRAIEAALKGKPEL 1004
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLER 215
VIVYLDD+L+ +++ S + LQ + +N ++
Sbjct: 1005 RKHVIVYLDDVLIASENETDHLSHLASVFEALQEAGFRLNRDK 1047
>gi|242117532|dbj|BAH80015.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1480
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 599 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 658
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ V+V++DD+L+ +Q + R
Sbjct: 659 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYFDKFVVVFIDDILIYSQSEEDHQHHLRLV 716
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 717 LGKLREHQLYAKLSKCEFW-LSEVKFLG 743
>gi|147800238|emb|CAN68706.1| hypothetical protein VITISV_001642 [Vitis vinifera]
Length = 1082
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 89 SLKKFHLINHFRVPDFLQRGDFLV------KIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
++ K + F +P D +V KIDL Y + IRP + S +D LY
Sbjct: 510 AINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLY 569
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+PFGL +AP F ++ + +G V+VY DD+L+
Sbjct: 570 EWLVMPFGLTNAPSTFMRVMMQVLKPF--IGRFVVVYFDDILI 610
>gi|88595455|gb|ABD43034.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 143
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D L+ KIDL Y + I S + R
Sbjct: 6 YRELNKMTIKNKYPLPRIDDLFDQLRGATVFSKIDLRSGYHQLRINESDIPKSAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L N + ++ +L V+V++DD+L+ ++D R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNRV--FIEHLDKFVVVFIDDILVFSKDPEEHEGHLRTV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L+S + L + W
Sbjct: 124 LDLLRSEQLYAKLSKCEFW 142
>gi|326673500|ref|XP_003199901.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1394
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 154/393 (39%), Gaps = 90/393 (22%)
Query: 80 QDLGDRAFLSLKKFHLIN-HFRVP--------DFLQRGDFLVKIDLSQAYFHVPIRPSHQ 130
+D G R + + + I FR P + L+ + K+DL AY + IRP +
Sbjct: 480 KDGGLRPCIDYRNLNAITCKFRYPLPLVPAALEQLRTAQYFTKLDLRSAYNLIRIRPGDE 539
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGN-- 187
Y +PFGL ++P VF N I R++ + VIVY+DD+L+ +
Sbjct: 540 WKTGFSTCTGHYEYLVMPFGLVNSPSVFQSFVNDI---FRDMLHKWVIVYIDDILIYSDS 596
Query: 188 -QDSV---------LLRSQARAAVATLQSLRWSVNL------ERSVLWPVQTCQYLGIMW 231
+D + L+ ++ A V + + S++L + V Q + + W
Sbjct: 597 LEDHITHVRAVLKRLIDNKLYAEVEKCEFHQTSISLLGYVISQEGVAMDEQKVNAV-LKW 655
Query: 232 NPTLDSKSLP------------LEKQSTIQRYLLTLT-----QIQWWSVA----LH---- 266
K L + STI L +LT Q++W + A +H
Sbjct: 656 PKPSTVKELQRFLGFANFYRRFIRNFSTIAAPLTSLTKRSGKQLKWNTTAELAFIHLKDR 715
Query: 267 -RSSPIF----PQAPQVFVSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWH 310
++PI P P V DASN+G GAI+ + + +
Sbjct: 716 FTTAPILSHPNPDKP-FIVEVDASNTGIGAILSQRQDASSVLHPCAYFSRKLNPAERNYD 774
Query: 311 INLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLA 370
+ +E+ A+++ALE + + L + ++ +V H K+ + LR + L
Sbjct: 775 VGNRELLAIKAALE------EWRHWLEGAKHEFIVMTDH-----KNLEYLRTAKRLNPRQ 823
Query: 371 VR-----HNITLMARYIPGKFNTWADSLSRQKE 398
R Y PG NT AD+LSRQ E
Sbjct: 824 ARWALFFSRFQFSVTYRPGSKNTKADALSRQFE 856
>gi|28273360|gb|AAO38446.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|62733520|gb|AAX95637.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|108710593|gb|ABF98388.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1229
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 348 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 407
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 408 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 465
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 466 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 496
>gi|19225016|gb|AAL86492.1|AC077693_31 putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 702
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 703 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKIVVVFIDDILIYSKSEEEHEQHLRLV 760
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 761 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 791
>gi|294892413|ref|XP_002774051.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239879255|gb|EER05867.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 1024
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 102/279 (36%), Gaps = 69/279 (24%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRD--TLYCMTCLPFGLASAPQVFAKLTNWIANYLRN 171
+DL Y+ +P+R QR + LY +PFGLASAP F +L + I +L
Sbjct: 346 LDLRSGYWQIPVRKEDQRKTAFCPGPGFPLYEWVMMPFGLASAPATFQRLMDAILEHLPF 405
Query: 172 LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMW 231
V VYLDD+L+ ++ R L++ +V E+ + YLG M+
Sbjct: 406 ----VRVYLDDVLIFSRSDEEHLEHLRIVFELLRAAGMTVAAEKCEFMQDRV-TYLGHMF 460
Query: 232 NPTLDSKSL---------PLEKQSTIQRYLLTLTQI------------------------ 258
N T S L PL + + R L L
Sbjct: 461 NSTGMSPDLGKAEVILRWPLPRTAPALRSFLGLAGYYRNFVPHFADRSRCLYEIVNYCTK 520
Query: 259 ----------------------QWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNH 296
QW + + P F + Q+ TDAS+ GA+V+
Sbjct: 521 NKVVELGNQWGKEEELAFNDLKQWIASLPLLAYPDFSRPFQLM--TDASDVAIGAVVEQD 578
Query: 297 S-----LGGVWSDHQEMWHINLKEMFAVRSALERKLPVL 330
+ Q +W + +E +AV ALER P+L
Sbjct: 579 GRPLAFFSQSLTPTQRVWPVYEREAYAVFKALERFRPLL 617
>gi|342870919|gb|EGU73816.1| hypothetical protein FOXB_15673 [Fusarium oxysporum Fo5176]
Length = 355
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ +DL AY + I+ + + + L+ +PFGL +AP F ++
Sbjct: 204 DRLQGKQIFTALDLKGAYNLIRIKEGDEWKTAFRTKFGLFEYLVMPFGLTNAPATFQRMI 263
Query: 163 NWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N N LR L + V+ YLDD+L+ + D + + LQ V E+S + V
Sbjct: 264 N---NVLRQYLDVFVVCYLDDILIFSDDEEEHKEHVHKVLKALQDANLLVEPEKS-HFHV 319
Query: 222 QTCQYLGIMWNP 233
+ +LG P
Sbjct: 320 KEVDFLGHTITP 331
>gi|384486240|gb|EIE78420.1| hypothetical protein RO3G_03124 [Rhizopus delemar RA 99-880]
Length = 172
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 302 WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLR 361
W++ ++ IN++E+ + AL+ ++K + +DN T + Y K GGT S LL+
Sbjct: 7 WTNEEKNTSINVRELKTILFALKLHTEKFREKNTQVFTDNITALKYSAKAGGTAS-PLLQ 65
Query: 362 EVEALFDLAVR-HNITLMARYIPGKFNTWADSLSRQK 397
E+ ++ +N+T+ ++PG N AD+LSR K
Sbjct: 66 ELAIEIQEVIKTYNLTVTYSHVPGILNIKADALSRIK 102
>gi|147835179|emb|CAN63369.1| hypothetical protein VITISV_016446 [Vitis vinifera]
Length = 283
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D ++G + K+DL +Y+ V I + + V R Y +PFGL +AP F L
Sbjct: 13 DGKEQGRYFTKLDLMLSYYQVRIAEEDEPKTTCVTRYDSYEFLVMPFGLTNAPATFCTLM 72
Query: 163 NWIAN-YLRNLGMRVIVYLDDLLL 185
N I + YL V+VYLDD+++
Sbjct: 73 NKIFHPYLDKF---VVVYLDDIVI 93
>gi|21672039|gb|AAM74401.1|AC120497_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 241
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR ++ + R LY T + FGL +AP F L
Sbjct: 113 DQLKGATVFSKIDLRSGYHQLRIREANILKTAFTTRYGLYEFTVISFGLTNAPAFFMNLM 172
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ +Q + R + L+ + L + W +
Sbjct: 173 NKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFW-LS 229
Query: 223 TCQYLG 228
++LG
Sbjct: 230 EVKFLG 235
>gi|116208568|ref|XP_001230093.1| hypothetical protein CHGG_03577 [Chaetomium globosum CBS 148.51]
gi|88184174|gb|EAQ91642.1| hypothetical protein CHGG_03577 [Chaetomium globosum CBS 148.51]
Length = 1508
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L F K+D+ A+ + + H+ + + R
Sbjct: 583 YRGLNEVTIKNRYPLPLIRETLDALCGAKFYTKLDVIAAFNRIRVAEGHEWLTAFITRFG 642
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARA 199
L+ M PFGL +AP F N+I + L + L + YLDD+L+ ++
Sbjct: 643 LFEMLVTPFGLCNAPATFQ---NYINHVLHDALDIYCTAYLDDVLVFSKTRAEHTRHVDE 699
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ L + +++ +S + +T +YLG++
Sbjct: 700 VIRRLGTAGLQIDINKSEFYTTKT-KYLGLI 729
>gi|88595473|gb|ABD43043.1| reverse transcriptase [Orobanche cernua var. australiana]
Length = 143
Score = 48.9 bits (115), Expect = 0.006, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKESDVPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF ++ N + ++ L VI+++DD+L+ ++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQVMNKV--FIEYLDKFVIIFIDDILIYSRSEEEHAHHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ R + W
Sbjct: 124 LDILRTERIYAKFSKCEFW 142
>gi|301631147|ref|XP_002944668.1| PREDICTED: hypothetical protein LOC100496098 [Xenopus (Silurana)
tropicalis]
Length = 525
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA---SAPQVFAKLTN 163
+G L K D+ A+ +PI P L + ++Y CLP G + S + F+
Sbjct: 134 KGALLAKADIESAFRLLPIHPECHHLLGCAFEGSIYVDLCLPMGCSISCSYFETFSSFME 193
Query: 164 WIANYLRNLGMRVIVYLDDLL-LGNQDSVLLRSQARAAVATLQSLRWSVNLERS---VLW 219
W+ R ++ YLDD L +G S + +ATLQ + + + +
Sbjct: 194 WVVRQ-RAQTTGIVHYLDDFLCVGPAKS----DECFHILATLQEVAEDFGVPLAPDKTVG 248
Query: 220 PVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR 250
PV +LG+ + LP++K ++R
Sbjct: 249 PVTCLSFLGLEIDSEKGESRLPVDKLEDLRR 279
>gi|110288888|gb|AAP53008.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1595
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 714 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 773
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 774 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 831
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 832 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 862
>gi|88595719|gb|ABD43166.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 48.9 bits (115), Expect = 0.006, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y + I+ S ++ R
Sbjct: 6 YRKLNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDIPKTAIRSRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF +L I ++ L V V++DD+L+ +++ R
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMTKI--FIEYLDKFVAVFIDDILIYSKNQKEHEEHLRIV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ L++ + + V W
Sbjct: 124 LNILRAEQLYAKFSKCVFW 142
>gi|384498718|gb|EIE89209.1| hypothetical protein RO3G_13920 [Rhizopus delemar RA 99-880]
Length = 1807
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 875 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 934
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 935 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 962
>gi|385300923|gb|EIF45176.1| retrotransposon ty3-gypsy subclass [Dekkera bruxellensis AWRI1499]
Length = 985
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 86/396 (21%), Positives = 148/396 (37%), Gaps = 99/396 (25%)
Query: 64 RRVHDLTLLLSSR-DGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFH 122
R+++D+T+ LSS D FQ L ++ H G + L QAY H
Sbjct: 616 RQLNDITVXLSSSIDSFQTLT-------REVH-------------GSIFSTLSLKQAYQH 655
Query: 123 VPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDD 182
+ + P Q + + +C LP GL++AP++F + +I + + YLDD
Sbjct: 656 LRLDPITQSLTTFNTKFGYFCWQVLPTGLSNAPELFCR---FITSLMSPFSEFTRCYLDD 712
Query: 183 LLLGNQDSVLLRSQARAAVATLQSLRWSVNLER------SVLW----------------- 219
+L+ + D + + L ++ E+ +V W
Sbjct: 713 ILVFSPDFESHKKALHQVCSLLSENGLHLDFEKCNFFKSTVTWVGYTFTATSSGVEVTPQ 772
Query: 220 --PVQTCQ-------------YLGIM-----WNPTLDSKSLPLEK----------QSTIQ 249
+QT + +LG + +NP L + PL + Q
Sbjct: 773 SSTIQTIRAISPPKTXKDVQNFLGHLAYMSAFNPNLSLTAPPLXQLLKSGARFDWTLECQ 832
Query: 250 RYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIV-DNHSL--------GG 300
L +I+ ALH P + ++TDAS+ GA + H L
Sbjct: 833 AAFEQLRKIEIEFFALHPFQHDLP----IKITTDASSYAVGAALWQKHDLHWYPVAYRSS 888
Query: 301 VWSDHQEMWHINLKEMFAVRSALER-KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKL 359
+D Q W I KE++A+ A + + +++Q+D++ +V + K
Sbjct: 889 KLNDLQLNWTITDKELYAILFATRAFHYFIANGQKIVVQTDHKALVRIFKSDNPNP--KY 946
Query: 360 LREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
L ++ + L YIPG NT AB LSR
Sbjct: 947 LHWIQEMIPYR------LXIDYIPGNTNTVABYLSR 976
>gi|384490500|gb|EIE81722.1| hypothetical protein RO3G_06427 [Rhizopus delemar RA 99-880]
Length = 1671
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 739 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 798
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 799 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 826
>gi|384486662|gb|EIE78842.1| hypothetical protein RO3G_03547 [Rhizopus delemar RA 99-880]
Length = 1807
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 874 IFTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDL 933
Query: 170 RNLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 934 SN----VHVYVDDIVIGTTGDSMEKHYQAVSAV 962
>gi|384496879|gb|EIE87370.1| hypothetical protein RO3G_12081 [Rhizopus delemar RA 99-880]
Length = 571
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L F +D++ Y+ VP+ V +
Sbjct: 187 YRKLNQMTVSNAYPLPLISELLDSLGGAKFFTTMDMAFGYWQVPMAEDSIEKTGFVTKKG 246
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVL 192
+Y +PFGL SAP F + N I +G +V++DD+L+ DS++
Sbjct: 247 IYEFLVMPFGLTSAPSTFQAMMNSILG--EYIGKFCLVFIDDVLIFGGDSLM 296
>gi|384490501|gb|EIE81723.1| hypothetical protein RO3G_06428 [Rhizopus delemar RA 99-880]
Length = 1505
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 573 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 632
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 633 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 660
>gi|348545597|ref|XP_003460266.1| PREDICTED: protein NLRC3-like [Oreochromis niloticus]
Length = 851
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + F+ K+DL + Y+ VP+ + V D T +PFGL +AP F +L
Sbjct: 6 DRVGSATFVTKLDLLKGYWQVPLTDRPSEISAFVTPDHFLQYTVMPFGLRNAPATFQRLM 65
Query: 163 NWIANYLRNLGMRVIVYLDDLL 184
N + + +RN VYLDD++
Sbjct: 66 NTVLHGVRNCE----VYLDDIV 83
>gi|4539665|gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor]
Length = 924
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ F KIDL Y + IR + V R Y T + FGL +AP F +
Sbjct: 71 DQLKDAKFFSKIDLRSGYHQMKIRSEDVPKTAFVTRYGQYEFTVVSFGLTNAPAYFMNMM 130
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ + + R + L+ + + W ++
Sbjct: 131 NKV--FMEELDKFVVVFIDDILVYSASAEEHEQHLRVVLEKLRQNQLYAKFSKCEFW-LE 187
Query: 223 TCQYLG 228
+LG
Sbjct: 188 EVAFLG 193
>gi|15451607|gb|AAK98731.1|AC090485_10 Putative retroelement [Oryza sativa Japonica Group]
gi|108706172|gb|ABF93967.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1461
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + F +P D L F K+DL Y V +RP + D
Sbjct: 573 YRALNALTVKDAFPIPVVDELLDELHGARFFSKLDLRSGYHQVRMRPEDIHKTAFRTHDG 632
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARA 199
LY +PFGL +AP F L N + LR+ R V+V+ DD+L+ + RA
Sbjct: 633 LYEFLVMPFGLCNAPATFQALMN---DVLRSFLRRFVLVFFDDILIYSDTWADHLRHLRA 689
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + + V + YLG
Sbjct: 690 VLTVLREHKLFIKRSKCAFG-VDSVAYLG 717
>gi|77553813|gb|ABA96609.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1556
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LL+ +DG + + + +L + + N + +P D L+ KIDL Y +
Sbjct: 687 LLVKKKDGSERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLK 745
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY T + FGL +AP F L N I ++ L V+V++DD+L
Sbjct: 746 IRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKI--FMECLDQFVVVFIDDIL 803
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
+ +++ R + L+ + + W + +LG + +P
Sbjct: 804 IYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFW-LDRVAFLGHVISPN 852
>gi|301617072|ref|XP_002937972.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 409
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 134 SVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLL 193
S+ RD Y +PFGL +AP VF + N I L LG+ V+VYLDD+L+ + +
Sbjct: 94 SMAKRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDL--LGVFVVVYLDDILIFSSNLNEH 151
Query: 194 RSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLE 243
R + L+ LE+ + + V + Q+LG + + SK L ++
Sbjct: 152 RIHVCEVLKRLRENNLYAKLEKCI-FEVSSVQFLGFI----ITSKGLEMD 196
>gi|292620155|ref|XP_001333892.3| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1252
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G KIDL+QAY + + + L++ L+ LPFG+ SAP +F + +
Sbjct: 450 LTGGQKFSKIDLNQAYLQMHVEEQSRELLTINTHKGLFRYQRLPFGITSAPSLFQRAMDQ 509
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR 208
I L V+ YLDD+L+ D S + ATL+ L+
Sbjct: 510 ILAGLPG----VVCYLDDILVTGTDD---ESHLQHLDATLKRLK 546
>gi|384502124|gb|EIE92615.1| hypothetical protein RO3G_17326 [Rhizopus delemar RA 99-880]
Length = 1609
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 819 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 878
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 879 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 906
>gi|126632233|gb|ABO21746.1| gag-pol polyprotein [Panicum virgatum]
Length = 276
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
KIDL Y + ++ + + + LY +PFGL +AP F +L N +
Sbjct: 7 FTKIDLRSGYHQIRMKLGDEWKTAFKTKVGLYEWLVMPFGLTNAPSTFMRLMNEVLRAF- 65
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+G V+VY DD+L+ ++ RA L++ NLE+ + +LG +
Sbjct: 66 -IGKFVVVYFDDILIYSKSHEEHLDHLRAVFDALRAASLYANLEKCIF-CTDRVAFLGYV 123
Query: 231 WNP 233
P
Sbjct: 124 VTP 126
>gi|427780775|gb|JAA55839.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1152
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL Y+ +P+ PS + + V D L+ +PFGL +AP F +
Sbjct: 374 DCLHSAAYFSSVDLRSGYWQIPMHPSDREKTAFVTPDGLFEFNVMPFGLCNAPATFERFM 433
Query: 163 NWIANYLRNLG-MRVIVYLDDLLL 185
+ I LR L + YLDD+++
Sbjct: 434 DSI---LRGLKWETCMCYLDDVII 454
>gi|326676679|ref|XP_003200646.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1353
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 160/403 (39%), Gaps = 83/403 (20%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + N + +P + LQ K+DL AY V IR + +
Sbjct: 467 YRGLNDITIKNRYPLPLMSSAFELLQGAQVFTKLDLRNAYHLVRIREGDEWKTAFNTPTG 526
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGN------------ 187
+ LPFGL +AP VF L N + LR++ + V VYLDD+L+ +
Sbjct: 527 HFEYLVLPFGLTNAPAVFQALVN---DVLRDMVNKFVFVYLDDILIFSSSLQEHTQHVRQ 583
Query: 188 ------QDSVLLRSQ-----ARAA-----VATLQSLRWSVNLERSVL-WPVQTC-----Q 225
++ + ++++ AR+ V + + +R + R+V WPV +
Sbjct: 584 VLQRLLENQLFVKAEKCEFHARSVAFLGYVISAEGIRADPDKVRAVAKWPVPNTRKALQR 643
Query: 226 YLGIM-----WNPTLDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHR---SSPIF--PQA 275
+LG + + PL ++ + TQ Q AL S+P+ P
Sbjct: 644 FLGFANFYRRFIRNFSQIAAPLTALTSTKVLFKWNTQAQEAFGALKSRFTSAPVLSIPDP 703
Query: 276 PQVF-VSTDASNSGWGAIVDNHSL--GGV---------WSDHQEMWHINLKEMFAVRSAL 323
Q F V DAS G GA++ HS G V S + + I +E+ AVR AL
Sbjct: 704 EQQFIVEVDASEVGVGAVLSQHSSKDGKVHPCAFFSYRLSPAERNYDIGNRELLAVRLAL 763
Query: 324 ERKLPVLQDKV--VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMAR 380
L+ L+ +D++ + Y+ +S K L +A + L R N L
Sbjct: 764 GEWRHWLEGAAHPFLVWTDHKN-LEYV------RSAKRLSARQARWALFFGRFNFVLS-- 814
Query: 381 YIPGKFNTWADSLSR-----QKELPDWHLLPEVTQHIFAQWGV 418
Y PG N D+LSR E P +LPE WG+
Sbjct: 815 YRPGSKNIKPDALSRLFETPSGETPVESILPEGVVVGSLSWGI 857
>gi|88595459|gb|ABD43036.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 138
Score = 48.5 bits (114), Expect = 0.006, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D LQR KIDL Y + IR S +
Sbjct: 6 YRELNRVTIKNKYPLPRIDDLLDQLQRASVFSKIDLRSGYHQLRIRESDIARTAFCTSYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMELMNRV--FINFLDRFVVVFIDDILI 108
>gi|341882120|gb|EGT38055.1| hypothetical protein CAEBREN_28397 [Caenorhabditis brenneri]
Length = 2174
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 143/354 (40%), Gaps = 93/354 (26%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLG 173
+DL Y+ +P++ S + + V Y LPFGL ++P +F + L +G
Sbjct: 1002 LDLVSGYWQLPLKESSKEITAFVVGTEFYEWEVLPFGLVTSPALFQATMETVVGDL--IG 1059
Query: 174 MRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL-WPVQTC-------Q 225
VY+DDLL+ +++ V LQ + V ERS L + C +
Sbjct: 1060 KCAFVYVDDLLVASEN-------MEQHVLDLQRVLERV--ERSGLKFRASKCHLAKREVE 1110
Query: 226 YLGIMWNPT-LDSKSLPLEKQSTIQR-------------------YLLTLTQI------- 258
YLG P + ++ +EK R +++T ++I
Sbjct: 1111 YLGHKITPEGVKTEEKKVEKMRKFSRPTNLKELQSFLGLVGYYRKFIMTFSKIAAPLTPL 1170
Query: 259 -----QW-WSVALHR----------SSPIFPQAPQV----------FVSTDASNSGWGAI 292
W W V S+P+ Q P V + TDAS G GA+
Sbjct: 1171 TSKNSAWIWGVEQETAFQLLIEKVCSAPVLMQ-PNVEAAINGSRPFLIYTDASRQGIGAV 1229
Query: 293 VDNHSLGG----------VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQ 342
+ + G + + +H+ E A+ SAL+R ++ V + +D++
Sbjct: 1230 LAQEADDGEQHPIAFSSRSLTSAETRYHVTDLEALAMMSALKRFKTIIYGTQVTVFTDHK 1289
Query: 343 TVVSYIHKEGGTKSFKLLREVEALFDLAVR-HNITLMARYIPGKFNTWADSLSR 395
+V Y+ K G + +LLR + + ++ +N+ L+ ++ GK N AD+LSR
Sbjct: 1290 PLV-YLLK-GSPLADRLLR-----WSIQIQEYNVRLV--FVNGKANVVADALSR 1334
>gi|147865503|emb|CAN79395.1| hypothetical protein VITISV_010430 [Vitis vinifera]
Length = 391
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Query: 63 GRRVHDLTLLLSSRDGFQDLGD----RAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQ 118
GRR+ T R G + + + R + + F+ + RV + RG + D
Sbjct: 4 GRRM-TTTTNAGHRSGQKSMAEARFARGLTANRDFYKLYSLRVYEPHNRG-VPRRCDNDN 61
Query: 119 AYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRN-LGMRVI 177
+ IRP + ++ +D LY +PFGL++AP F +L N + LR+ +G V+
Sbjct: 62 LQXGILIRPRDEWKMAFKTKDGLYEWLVMPFGLSNAPSTFMQLMNQV---LRSFIGKFVV 118
Query: 178 VYLDDLLLGNQDSVLLRSQARAAVATLQS 206
VY DD+L+ ++D S R + LQ+
Sbjct: 119 VYFDDILIYSKDEEEHLSHLREVLLALQA 147
>gi|53749310|gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1154
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L KIDL Y + ++ + ++ + LY +PFGL +AP F +L
Sbjct: 551 DELSGAVIFSKIDLRSGYHQIRMKEGDEWKIAFKTKFGLYEWLVMPFGLTNAPSTFMRLM 610
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
N + +G V+VY DD+L+ ++ + R + L+S R N E+
Sbjct: 611 NHVLRAF--IGKFVVVYFDDILIYSKTMEEHLAHIRQVLEMLRSERLFANFEKCTF 664
>gi|34015184|gb|AAQ56379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1689
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 848 YRALNEVTIKNKYPLPRIDDLFDQLKGVTVFSKIDLRSGYHQLCIREEDIPKTAFTTRYG 907
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 908 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQQHLRLV 965
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 966 LGKLREHQLYAKLSKCEFW-LSEVKFLG 992
>gi|115481476|ref|NP_001064331.1| Os10g0317000 [Oryza sativa Japonica Group]
gi|15217201|gb|AAK92545.1|AC051624_3 Putative retroelement [Oryza sativa Japonica Group]
gi|31431040|gb|AAP52878.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|113638940|dbj|BAF26245.1| Os10g0317000 [Oryza sativa Japonica Group]
Length = 1476
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F K+DL Y V +R + D LY +PFGL +AP F L
Sbjct: 610 DELHGAKFFTKLDLRSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALM 669
Query: 163 NWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N I YLR V+V+ DD+L+ + RA + L+ R V + V
Sbjct: 670 NDILRIYLRRF---VLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFG-V 725
Query: 222 QTCQYLG 228
+ YLG
Sbjct: 726 SSISYLG 732
>gi|384490515|gb|EIE81737.1| hypothetical protein RO3G_06442 [Rhizopus delemar RA 99-880]
Length = 3435
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 1093 IFTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDL 1152
Query: 170 RNLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 1153 SN----VHVYVDDIVIGTTGDSMEKHYQAVSAV 1181
>gi|315056475|ref|XP_003177612.1| hypothetical protein MGYG_08943 [Arthroderma gypseum CBS 118893]
gi|311339458|gb|EFQ98660.1| hypothetical protein MGYG_08943 [Arthroderma gypseum CBS 118893]
Length = 574
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N +P D L F K+DL +AY V I+ + + R
Sbjct: 206 YRGLNKMTIKNRLTLPRVDEMLDRLAGAMFFTKLDLREAYHRVRIKEGDEWKTAFRTRYG 265
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGLA+AP F N + L ++ IVYLDD+L+ + +
Sbjct: 266 HYEYLVMPFGLANAPATFQGYINRVLTGLVDIA--CIVYLDDILIFSASREKYIRHIKLV 323
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ R L + + V + +LG
Sbjct: 324 LDRLRKYRLYAKLSKCAFFQV-SVDFLG 350
>gi|189238306|ref|XP_001810526.1| PREDICTED: similar to orf [Tribolium castaneum]
gi|270008606|gb|EFA05054.1| hypothetical protein TcasGA2_TC015149 [Tribolium castaneum]
Length = 1003
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
F +D+ ++ + I + + + D Y +PFG +AP ++ + + L
Sbjct: 258 FFTTLDMKSGFYQMEIEEESKHITAFITPDGHYEFNRMPFGYVNAPSIYQRAIDKALGDL 317
Query: 170 RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGI 229
+ G + VYLDD+L+ + + + L + +S+N E+ V + +T +YLG+
Sbjct: 318 K--GSKAFVYLDDVLVPSTTIEEGLDTLQEVLCALTAGGFSLNYEKCVFFATET-EYLGV 374
Query: 230 M 230
+
Sbjct: 375 V 375
>gi|38346257|emb|CAE02079.2| OSJNBa0074B10.7 [Oryza sativa Japonica Group]
Length = 1287
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 143/338 (42%), Gaps = 40/338 (11%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + I R
Sbjct: 523 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRICEEDIPKTGFTTRYG 582
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 583 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVNSQSEEDHQQHLRLV 640
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSLPLEKQSTIQRYLLTLTQ 257
+ L+ + L + + ++LG + + +D++++ + LL +
Sbjct: 641 LGMLREHQLYAKLSKCEFR-LSEVKFLGHVISAKGVAVDTETVTAVTDWKQPKTLLKKEE 699
Query: 258 IQWWSVALHR----------SSP--IFPQAPQVF-VSTDASNSGWGAIV--DNHSLG--- 299
WS + SSP I P + F V DAS G G ++ + H +
Sbjct: 700 KFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFIVYCDASRQGLGCVLMQEGHVVAYAS 759
Query: 300 -GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFK 358
+W H+ + + E+ AV AL+ L I +D+++ + YI T+S
Sbjct: 760 RQLWP-HEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKS-LKYIF----TQSDL 813
Query: 359 LLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
LR+ L +L +++ + Y PGK N AD+LSR+
Sbjct: 814 NLRQRRWL-ELIKDYDVGI--HYHPGKANMVADALSRK 848
>gi|384489692|gb|EIE80914.1| hypothetical protein RO3G_05619 [Rhizopus delemar RA 99-880]
Length = 1186
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 256 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 315
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 316 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 343
>gi|254587292|emb|CAX83703.1| Gag-Pol polyprotein [Schistosoma japonicum]
Length = 1367
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 104 FLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN 163
L G F K+DL+ AY + + L++ ++ LPFG+ +AP +F +L +
Sbjct: 575 MLNGGKFFAKLDLADAYLQEEVAEESRELLTINTHRGMFQYNRLPFGVKTAPSIFQQLMD 634
Query: 164 WIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I + V YLDD+L+ LR + + + + + E+ + +++
Sbjct: 635 TILAGIAG----VATYLDDILIVATSPEELRERTTNVLQRISENGFRLRPEKCQFF-LES 689
Query: 224 CQYLGIMWN 232
+YLG +++
Sbjct: 690 VKYLGFIFD 698
>gi|116309193|emb|CAH66288.1| OSIGBa0161P06.5 [Oryza sativa Indica Group]
Length = 1471
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 590 YRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 649
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R A
Sbjct: 650 LYECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLA 707
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W + ++LG
Sbjct: 708 LEKLKEHQLYAKFSKCDFW-LTEVKFLG 734
>gi|88595627|gb|ABD43120.1| reverse transcriptase [Orobanche bungeana]
Length = 143
Score = 48.5 bits (114), Expect = 0.006, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y+ + ++ S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYYQLRVKESDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N I ++ +L V+V+++D+L+
Sbjct: 66 HYEFIVMPFGLTNAPAVFMQLMNKI--FIEHLDTCVVVFINDILI 108
>gi|88595449|gb|ABD43031.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 143
Score = 48.5 bits (114), Expect = 0.007, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L+ KIDL Y + I+ + R
Sbjct: 6 YRELNRLTIKNKYPLPRIENLFDQLRGARIFSKIDLRSGYHQLKIKEEDISKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL++AP VF L N + + + L VIV++DD+L+ ++D R
Sbjct: 66 HYEFVVMPFGLSNAPAVFMDLMNRV--FHQYLDKFVIVFIDDILVYSEDEKQHEEHLRVV 123
Query: 201 VATLQS 206
+ TL++
Sbjct: 124 LETLRN 129
>gi|384486075|gb|EIE78255.1| hypothetical protein RO3G_02959 [Rhizopus delemar RA 99-880]
Length = 1732
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 875 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 934
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 935 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 962
>gi|284434645|gb|ADB85360.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 454
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 90 LKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L + + N++ +P D L+ KIDL Y + IRP + R LY
Sbjct: 293 LNEVTIKNNYPLPIIDDLFDQLKGASVFSKIDLRSGYHQLKIRPEDIPKTAFTTRYGLYE 352
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVAT 203
T + F L + P F + N + ++ L V+V++DD+L+ ++D RA +
Sbjct: 353 FTVMSFDLTNTPVYFMSMMNKV--FMDFLDKFVVVFIDDILIYSRDEDEHEKHLRAVLER 410
Query: 204 LQSLRWSVNLERSVLW 219
L+ + +S W
Sbjct: 411 LREQQLYAKFSKSEFW 426
>gi|432875314|ref|XP_004072780.1| PREDICTED: uncharacterized protein LOC101168790 [Oryzias latipes]
Length = 1839
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 150/390 (38%), Gaps = 79/390 (20%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSH 129
+ +DG + D + L+ ++ L V D LQ+ K+DL AY V IR
Sbjct: 660 FFVGKKDGSLRPCIDYSALNENRYPLPLMSSVFDQLQQAKVFTKLDLRNAYHLVRIREGD 719
Query: 130 QRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRN-LGMRVIVYLDDLLLGNQ 188
+ Y +PFGL +AP VF + N + LR+ L V VYLDD+L+ +
Sbjct: 720 EWKTGFNTPRGHYEYLVMPFGLTNAPAVFQAMIN---DVLRDFLDHFVYVYLDDILIYSP 776
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN---------------- 232
D + A + L V E+S V T +LG + +
Sbjct: 777 DPDTHVTHVSAGLKRLLDNHLYVKAEKSEFH-VSTVAFLGFIVSAGTVEMDPAKVIAVTD 835
Query: 233 -PTLDSKSLP---LEKQSTIQRYL------------LTLTQIQW-WSVALHRS----SPI 271
P+ DS+ L + +R++ LT ++Q+ W+ A +
Sbjct: 836 WPSPDSRKKLQQFLGFANFYRRFIRAFSSFAAPLHALTSPRVQFRWTPAAEAAFRTLKRR 895
Query: 272 FPQAP---------QVFVSTDASNSGWGAIVDNHS-----------LGGVWSDHQEMWHI 311
F AP Q V DASN G GA++ S L S + + I
Sbjct: 896 FTSAPLLTLPDPRRQFVVEVDASNEGIGAVLSQRSEQDGKLHPCAFLSRRLSASERNYDI 955
Query: 312 NLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV 371
+E+ AV+ ALE + + L +++ VV H K+ + +R + L
Sbjct: 956 GNRELLAVKVALE------EWRHWLEGAEHPFVVWTDH-----KNLEYIRNAKRLNSRQA 1004
Query: 372 R-----HNITLMARYIPGKFNTWADSLSRQ 396
R + + Y PG N D+LSR+
Sbjct: 1005 RWRLFFDRFSFVLSYRPGSKNIKPDALSRR 1034
>gi|292620684|ref|XP_001919425.2| PREDICTED: uncharacterized protein K02A2.6-like [Danio rerio]
Length = 1209
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G KIDL+QAY + + + L++ L+ LPFG+ SAP +F + +
Sbjct: 407 LTGGQKFSKIDLNQAYLQMHVEEQSRELLTINTHKGLFRYQRLPFGITSAPSLFQRAMDQ 466
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQD 189
I L V+ YLDD+L+ D
Sbjct: 467 ILAGLPG----VVCYLDDILVTGTD 487
>gi|62701906|gb|AAX92979.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1074
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SLK+ + N + +P D L+ KI+L Y + IR + R
Sbjct: 586 YRSLKEVTIKNKYPLPRIDDLFDQLKGAKVFSKINLRSGYHQLKIRTEDIPKTAFSTRYG 645
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDS 190
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D
Sbjct: 646 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDE 693
>gi|108862426|gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
KIDL Y + ++ + + + LY +PFGL +AP F +L N +
Sbjct: 653 FTKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPF- 711
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+G V+VY DD+L+ ++ RA L R NLE + ++ + +LG +
Sbjct: 712 -IGRFVVVYFDDILIYSKSFDEHMDHLRAVFNALHDARLFANLE-NCIFCTERVSFLGYV 769
Query: 231 WNP 233
P
Sbjct: 770 VTP 772
>gi|326679559|ref|XP_003201328.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1315
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 155/389 (39%), Gaps = 82/389 (21%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D LQ K+DL AY V I+ + +
Sbjct: 466 YRGLNEITVKNKYPLPLISTAFDILQGARIFTKLDLRNAYHLVRIKAGDEWKSAFNTPFG 525
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ LPFGL +AP VF L N + + L + V VYLDD+L+ + D R
Sbjct: 526 HFEYRVLPFGLVNAPAVFQALINDVLCDM--LNIFVFVYLDDILIFSPDLPTHIQHVRRV 583
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQ--YLGIMWNP---TLDSKSL------PL-EKQSTI 248
+ L R V E+ TC +LG + + ++D L P+ E + +
Sbjct: 584 LQRLLENRLFVKSEKCDF---HTCSVPFLGYIISDKGVSMDPAKLRGVIDWPIPESRVAL 640
Query: 249 QRYL----------------------LTLTQIQW-WS----VALHRSSPIFPQAP----- 276
QR+L LT + ++ WS A R +F AP
Sbjct: 641 QRFLGFSNFYRRFIRNFSQIAAPLTALTSAKTRFEWSDSAQQAFDRLKRMFASAPILITP 700
Query: 277 ----QVFVSTDASNSGWGAIV------DNHSLGGVWSDH-----QEMWHINLKEMFAVRS 321
Q V DAS+ G GA++ DN + H + + + +E+ AVR
Sbjct: 701 DPERQFIVEVDASDVGVGAVLSQRSAEDNKVHPCAFFSHRLTPAERNYDVGNRELRAVRL 760
Query: 322 ALERKLPVLQDKVV--LIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLM 378
AL L+ + ++ +D++ + YI +S K L +A + L R N T+
Sbjct: 761 ALGEWRHWLEGASIPFVVWTDHRN-LEYI------RSVKRLNARQARWALFFNRFNFTIS 813
Query: 379 ARYIPGKFNTWADSLSRQKELPDWHLLPE 407
Y PG N D+LSRQ + + LPE
Sbjct: 814 --YRPGTKNIKPDALSRQFTVLEDKPLPE 840
>gi|308489628|ref|XP_003107007.1| hypothetical protein CRE_17270 [Caenorhabditis remanei]
gi|308252895|gb|EFO96847.1| hypothetical protein CRE_17270 [Caenorhabditis remanei]
Length = 1385
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + +IDL++AY + I ++ L + LY LPFG+ SAP F ++ +
Sbjct: 568 LNGGKYFSQIDLAEAYLQIEIDEQAKQMLCINTHRGLYRYNRLPFGVKSAPGSFQQIMDS 627
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVL 218
+ + L V YLDD+++ + ++ +Q V +E+
Sbjct: 628 MTSGLDG----VAAYLDDIIITGSSVAEHNQRLETVMSRIQDFGLRVRIEKCTF 677
>gi|365758283|gb|EHN00133.1| YGR109W-B-like protein [Saccharomyces cerevisiae x Saccharomyces
kudriavzevii VIN7]
Length = 528
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 87 FLSLKKFHLINHF---RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + + F R+ L R +DL Y +P+ P + V
Sbjct: 253 YCTLNKATISDPFPLPRIDSLLNRIGNARVFTTLDLHSGYHQIPMEPKDCYKTAFVTPPG 312
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL---------------- 184
Y T +PF L +AP FA+ ++A+ R L V VYLDD+L
Sbjct: 313 KYEYTVMPFRLVNAPSTFAR---YMADIFRELRF-VNVYLDDILIFSESQEEHWTHFDTV 368
Query: 185 ---LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP------- 233
L +++ ++ + + + A ++ L +S+ ++R + P+Q C + P
Sbjct: 369 LGGLKDENLIVKKKKCQFASKQIEFLGYSIGIQR--ITPLQHKCAAIREFLTPKTVKQAQ 426
Query: 234 ----TLDSKSLPLEKQSTIQR--YLLTLTQIQW---WSVALHR------SSPI---FPQA 275
T++ + K S I + L +IQW A+ R SSP+ F
Sbjct: 427 RFLGTINYYRRFIPKCSKIAQPIQLFICDKIQWTEEQEKAIERLKTALCSSPVLIPFDSK 486
Query: 276 PQVFVSTDASNSGWGAIVD 294
++TDAS G GA+++
Sbjct: 487 ATYRLTTDASKDGIGAVIE 505
>gi|294893282|ref|XP_002774394.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239879787|gb|EER06210.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 778
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 103/279 (36%), Gaps = 69/279 (24%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRD--TLYCMTCLPFGLASAPQVFAKLTNWIANYLRN 171
+DL Y+ +P+R QR + LY +PFGLASAP F +L + I +L
Sbjct: 357 LDLRSGYWQIPVRKEDQRKTAFCPGPGFPLYEWVMMPFGLASAPATFQRLMDAILGHLPF 416
Query: 172 LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMW 231
V VYLDD+L+ ++ R L++ +V E+ + YLG M+
Sbjct: 417 ----VRVYLDDVLIFSRSDEEHLEHLRIVFELLRAAGMTVAAEKCEFMQDRV-TYLGHMF 471
Query: 232 NPTLDSKSL---------PLEKQSTIQRYLLTLTQI------------------------ 258
N T S L PL + + R L L
Sbjct: 472 NSTGMSPDLGKAEVILRWPLPRTAPALRSFLGLAGYYRNFVPHFADRSRCLYEIVNYCTK 531
Query: 259 ----------------------QWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNH 296
QW + + P F + Q+ TDAS+ GA+V+
Sbjct: 532 NKVVELGNQWGKEEELAFNDLKQWIASLPLLAYPDFSRPFQLM--TDASDVAIGAVVEQD 589
Query: 297 S-----LGGVWSDHQEMWHINLKEMFAVRSALERKLPVL 330
+ Q++W + +E +A+ ALER P+L
Sbjct: 590 GRPLAFFSQSLTPTQKVWPVYEREAYAIFKALERFRPLL 628
>gi|343475375|emb|CCD13217.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 507
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G + IDL+ A+F VP+ HQ+ + ++ Y T LP G ++P + L +
Sbjct: 102 GTWYAAIDLANAFFSVPVHKDHQKQFAFSWQGQQYTFTVLPQGYINSPALCHNLVRRDLD 161
Query: 168 YLR-NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQY 226
L + ++ Y+DD++L + + + V ++ W +N + + P + ++
Sbjct: 162 RLDLPQNITLVHYIDDIMLIGPSEQEVATTLDSLVTHMRIRGWEINPTK-IQGPSTSVKF 220
Query: 227 LGIMW 231
LG+ W
Sbjct: 221 LGVQW 225
>gi|326668018|ref|XP_003198707.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1157
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 142/355 (40%), Gaps = 80/355 (22%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IRP + + YC+ LPFGL++AP VF L
Sbjct: 410 LQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCV--LPFGLSNAPAVFQALV 467
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYL D+L+ + R + L V E+ V
Sbjct: 468 N---DVLRDMIDQFIYVYLYDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFH-A 523
Query: 222 QTCQYLG------------------IMWNPTLDSKSLP---LEKQSTIQRYLLTLTQI-- 258
Q+ Q+LG + W PT DS+ L + +R++ +Q+
Sbjct: 524 QSVQFLGHIVSVEGMRMDPEKIQAVVDW-PTPDSRKALQRFLAFANFYRRFIRNFSQLAA 582
Query: 259 ------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIVD 294
+W S A + F AP Q V DAS G AI+
Sbjct: 583 PLTSLTSSKTPFKWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVEAILS 642
Query: 295 NHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDN 341
S G V S + + I +E+ AV+ ALE L+ V ++ +D+
Sbjct: 643 QRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDH 702
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ + YI +S K L +A + L R N T+ Y PG N D+LSR
Sbjct: 703 KN-LEYI------RSAKRLNSRQARWALFFGRFNFTIS--YRPGSKNIKPDALSR 748
>gi|270000947|gb|EEZ97394.1| hypothetical protein TcasGA2_TC011220 [Tribolium castaneum]
Length = 1958
Score = 48.5 bits (114), Expect = 0.007, Method: Composition-based stats.
Identities = 82/369 (22%), Positives = 144/369 (39%), Gaps = 77/369 (20%)
Query: 92 KFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGL 151
++ L N + D L R + IDL+ + + + P+ + + + Y +PFGL
Sbjct: 595 RYPLPNINDILDKLGRSQYFSTIDLASGFHQIEVDPNDVQKTAFTVENGHYEFVRMPFGL 654
Query: 152 ASAPQVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLR-- 208
+AP F ++ + N LR + IVYLDD+++ S L+ + A +R
Sbjct: 655 KNAPSTFQRVMD---NVLRGIVNNCCIVYLDDIIVF---STSLQEHIQKLTAVFDRIRKF 708
Query: 209 -WSVNLERSVLWPVQTCQYLGIMWNP------------TLDSKSLPLEKQ--------ST 247
+ + L+RS + YLG + P LD KQ
Sbjct: 709 NFKIQLDRSEFLK-KEVNYLGHVITPEGIKPNPDKIKAILDYSIPTTPKQLKGFLGLIGY 767
Query: 248 IQRYLLTLTQI-QWWSVALHRSSPIFP----------------------QAP----QVFV 280
++++ +I + ++ L + I P Q P Q +
Sbjct: 768 YRKFIKNFAKITKPLTIRLKKDHKIDPNETDYKNCFEFCKNLLTNDLILQYPDFDKQFIL 827
Query: 281 STDASNSGWGAIVDNHSLGG---------VWSDHQEMWHINLKEMFAVRSALERKLPVLQ 331
+TDASN GA++ ++G ++H+ + KE+ A+ A + P L
Sbjct: 828 TTDASNYAIGAVLSQGTIGSDLPVAFASRTLNEHEINYSTIEKELLAIVWATKYFRPYLY 887
Query: 332 DKVVLIQSDNQTVV-SYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWA 390
+ I +D+Q + + KE +K + +E FD + Y GK N+ A
Sbjct: 888 GRKFKIVTDHQPLKWLFSLKEPNSKLVRWRLRLEE-FDYEI--------HYKKGKLNSNA 938
Query: 391 DSLSRQKEL 399
D+LSR L
Sbjct: 939 DALSRPPNL 947
>gi|242085414|ref|XP_002443132.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
gi|241943825|gb|EES16970.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
Length = 1462
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + F +P D L+ F K+DL Y V +R S + D
Sbjct: 552 YRALNAITVKDAFPIPVVDELLDELRGAKFFTKLDLRSGYHQVRMRASDIDKTAFRTHDG 611
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
LY +PFGL +AP F L N + +LR V+V+ DD+L+ + RA
Sbjct: 612 LYEFLVMPFGLCNAPATFQALMNDVLRPFLRRF---VLVFFDDILIYSTSWADHLRHLRA 668
Query: 200 AVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ LQ + V + V + YLG
Sbjct: 669 VLTVLQHHQLFVKRSKCAFG-VSSISYLG 696
>gi|77551549|gb|ABA94346.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 960
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 42/337 (12%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 146 YRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 205
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 206 LFECTVMSFGLTNAPTFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEHHLRLV 263
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQR---YLLTLTQ 257
+ L+ + + W + +LG+ +E S I R LL +
Sbjct: 264 LEKLKEHQLYAKFSKCDFWLSEIRSFLGLA-----GYYRRFIENFSKIARPMTQLLKKDE 318
Query: 258 IQWWSVALHR----------SSP--IFPQAPQVF-VSTDASNSGWGAIVDNHSLGGVWSD 304
WS ++ S+P I P + F V DAS G G ++ ++
Sbjct: 319 KFKWSAECNQSFEELKKRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQEGRVVAYAS 378
Query: 305 -----HQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKL 359
H+ + + E+ AV AL+ L + +D+++ + YI + + +
Sbjct: 379 RQLRPHETNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKS-LKYIFTQPDL-NLRQ 436
Query: 360 LREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
R +E + D + Y PGK N AD+LSR+
Sbjct: 437 RRWLELIKDY------DMGIHYHPGKANVVADALSRK 467
>gi|156398436|ref|XP_001638194.1| predicted protein [Nematostella vectensis]
gi|156225313|gb|EDO46131.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 231 WNPTLDSKSLPLEKQSTIQRYLLTLTQIQWW---SVALHRSSPIFPQAPQVFVSTDASNS 287
W+ LD + +Q L ++++W SV L+ P V + +DAS
Sbjct: 15 WDTQLDLRCYQFFQQ--------CLVEVEFWLSSSVRLNNKILFSYSKPIVVIHSDASAF 66
Query: 288 GWGA---IVDNHSLG---GVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDN 341
G ++D+ +S + + N +E+ A+ +L+ P+++ K+V I DN
Sbjct: 67 ACGGHALVLDSAEFELFFQAFSTIESVSDSNGRELLAIIYSLKSFRPLIEGKIVKIYRDN 126
Query: 342 QTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+ K G+ S +L +F H ++L ++P + N +AD LSR
Sbjct: 127 RNAAIITRK--GSMSLRLPEIALDIFHFCASHQVSLEVEWVPRQLNEYADLLSR 178
>gi|89179458|gb|ABD63193.1| gag-pol polyprotein, putative [Asparagus officinalis]
Length = 358
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D + KIDL Y + IRP + + +D LY +PFGL +AP F ++
Sbjct: 27 DMMSGATIFSKIDLKSGYHQIRIRPGDEWKTAFKTKDGLYEWMVMPFGLTNAPSTFMRVM 86
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ +G ++VY DD+L+ ++
Sbjct: 87 TQVLRPF--MGKFLVVYFDDILIYSK 110
>gi|4325361|gb|AAD17358.1| contains similarity to reverse transcriptase (Pfam: PF00078,
Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers
(Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis
thaliana]
Length = 901
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 30/317 (9%)
Query: 91 KKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFG 150
KK+ L + D L+ KID + Y +PI ++ R + R + +PFG
Sbjct: 446 KKYPLPRINELLDQLRGATCFSKIDFTSGYHQIPIAEAYVRKTAFKTRYGHFEFVVMPFG 505
Query: 151 LASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWS 210
L +AP F +L N + + L VI+++DD+L+ ++ + L +
Sbjct: 506 LTNAPAAFMRLMNSV--FQEFLDEFVIIFIDDILVYSKSPEEHEVHLMRVMEKLWEQKLF 563
Query: 211 VNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTIQRY--LLTLTQIQWWSVALHRS 268
L + W + +LG ++ + S+ EK I+ + T+I RS
Sbjct: 564 AKLSKCSFWQREM-GFLGHIF--SAKGVSVDPEKIEAIRDWPKPTNATEI--------RS 612
Query: 269 SPIFPQAPQVFVSTDASNSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLP 328
+ FV AS + + + ++ VWS E ++LKEM P
Sbjct: 613 FLGLAGYYRRFVKGFASMAQPMSKLTGKNVPFVWSLDCEEGFMSLKEMLM-------STP 665
Query: 329 VLQDKVVLIQSDNQTVVSY----IHKEGGTKSFKLLREVEALFDLAV----RHNITLMAR 380
VL + V++Y + K G L V +F L + + +
Sbjct: 666 VLIARAWRALHGRGKVIAYGSRQLRKHEGNYPTHDLEMVAVIFALKIWRSYLYGGKVQIA 725
Query: 381 YIPGKFNTWADSLSRQK 397
Y PGK N D+LSR++
Sbjct: 726 YHPGKANVVTDALSRKR 742
>gi|147785058|emb|CAN66521.1| hypothetical protein VITISV_008420 [Vitis vinifera]
Length = 1104
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 90 LKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYC 143
L K + N + +P + L R + K+DL +Y+ V I + + V R Y
Sbjct: 507 LNKVTVKNKYPIPLIVDLFNQLGRARYFTKLDLRSSYYQVRIAEEDEPKTTCVTRYGSYE 566
Query: 144 MTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
+PFGL +AP F L N I + YL ++VYLDD+ +
Sbjct: 567 FLVMPFGLTNAPATFCTLMNKIFHPYLDKF---MVVYLDDIAI 606
>gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza sativa Japonica Group]
Length = 1851
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LL+ +DG + + + +L + + N + +P D L+ KIDL Y +
Sbjct: 966 LLVKKKDGSERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLK 1024
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY T + FGL +AP F L N I ++ L V+V++DD+L
Sbjct: 1025 IRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKI--FMEYLDQFVVVFIDDIL 1082
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPT 234
+ +++ R + L+ + + W + +LG + +P
Sbjct: 1083 IYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFW-LDRVAFLGHVISPN 1131
>gi|242085372|ref|XP_002443111.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
gi|241943804|gb|EES16949.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
Length = 1456
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 129/335 (38%), Gaps = 59/335 (17%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L F K+DL Y V + P+ + D LY +PFGL +AP F L
Sbjct: 602 DELHGACFFTKLDLRSGYHQVRMLPADVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALM 661
Query: 163 NWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + +LR V+V+ DD+L+ ++ RA + L+ R + +
Sbjct: 662 NDVLRPFLRRF---VLVFFDDILIYSETWADHLRHLRAVFSELRRHRLFIKRSKCAFGEA 718
Query: 222 QTCQYL-------GIMWNPTLDS--KSLPLEKQSTIQRYLLTLTQIQWWSV--------- 263
T YL G+ +PT + P+ + R L L V
Sbjct: 719 -TVAYLGHVTSAEGVAMDPTKVQAIRDWPVPRSVRALRGFLGLAGYYRKFVLNYGATDAA 777
Query: 264 --------ALHRSSPIF--PQAPQVF-VSTDASNSGWGAIV--DNHSLG----GVWSDHQ 306
A S+P+ P + F V DAS G+GA++ + H + V H+
Sbjct: 778 ASAFGALKAAVTSAPVLTMPDFAKPFTVECDASTHGFGAVLIQEGHPIAFFSRPVAPRHR 837
Query: 307 EMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKS-----FKLLR 361
+ +E+ + A+ P L + ++++D+ + + + T KLL
Sbjct: 838 ALAAYE-RELIGLVHAVRHWRPYLWGRRFVVKTDHYNLKYLLDQRLSTIPQHHWVGKLLG 896
Query: 362 EVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
FD +V Y PG NT AD+LSR+
Sbjct: 897 -----FDFSV--------EYKPGVTNTVADALSRR 918
>gi|88595615|gb|ABD43114.1| reverse transcriptase [Orobanche bungeana]
Length = 143
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ KIDL Y+ + ++ S + R Y +PFGL +AP VF +L
Sbjct: 28 DQLQGATVFSKIDLRSGYYQLRVKESDIPKTAFRTRYGHYEFVVMPFGLTNAPAVFMQLM 87
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
N I ++ +L V+V++DD+L+ +++ + L++ + + V W
Sbjct: 88 NKI--FIEHLDTCVVVFIDDILIYSRNEEEHARHLHLVLNILRAHQLYAKFSKCVFW 142
>gi|57863932|gb|AAS90688.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 908 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 967
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 968 LFEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1025
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1026 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1052
>gi|270001182|gb|EEZ97629.1| hypothetical protein TcasGA2_TC016077 [Tribolium castaneum]
Length = 468
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + H+ +P D L+ + +DLS Y VP+ + + + D
Sbjct: 360 YRALNKKTVKQHYPLPLIDDQLDRLRGQIYFTSVDLSMGYHQVPMSIHARGKTAFINPDG 419
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
+YC + FGLA+AP F +L N + LR + YLDD+
Sbjct: 420 VYCFKRMSFGLANAPSQFQRLINIVVGNLRYDT--AMAYLDDIC 461
>gi|88595535|gb|ABD43074.1| reverse transcriptase [Orobanche cernua var. desertorum]
Length = 143
Score = 48.5 bits (114), Expect = 0.007, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D LQ KIDL Y + IR S ++ R
Sbjct: 6 YRELNRVTIKNKYPLPRIDEILDQLQGASVFSKIDLRSGYHQLRIRESDIARMAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+
Sbjct: 66 HYEFVVMPFGLTNAPAVFMELMNRV--FINFLDRFVVVFIDDILI 108
>gi|62732819|gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550206|gb|ABA93003.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1436
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDVPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL + P F L N + ++ L V+V++DD+L+ ++D R
Sbjct: 658 LYEFTVMSFGLTNTPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHVEHLRLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LEKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|326678732|ref|XP_003201155.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1347
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 143/356 (40%), Gaps = 82/356 (23%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQ--RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
LQ +F K+DL AY V IR + + YC+ LPFGL++AP VF
Sbjct: 606 LQGANFFTKLDLRNAYHLVRIRAGDEWKSAFNTPRGHFEYCV--LPFGLSNAPAVFQAFV 663
Query: 163 NWIANYLRNLGMRVI-VYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ + I VYLDD+L+ + R + L V E+ V
Sbjct: 664 N---DVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-A 719
Query: 222 QTCQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQI- 258
Q+ +LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 720 QSVPFLGHIVSVEGLRMDPEKIKAVVNW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLA 777
Query: 259 -------------QWWS---VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV 293
+W S A + F AP Q V DAS G GAI+
Sbjct: 778 APLTALTSSKTPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVVEVDASEVGVGAIL 837
Query: 294 DNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSD 340
S G + S + + I +E+ AV+ ALE L+ V ++ +D
Sbjct: 838 SQRSSSDGKIHPCAYYSHRLSAAESNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTD 897
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
++ + YI KS K L +A + L R N T+ Y PG N D+LSR
Sbjct: 898 HKN-LEYI------KSAKRLNSRQARWALFFGRFNFTI--SYRPGSKNIKPDALSR 944
>gi|108862573|gb|ABA97909.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1613
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 753 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 812
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 813 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQLEEDHQQHLRLV 870
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 871 LGKLREHQLYAKLSKCEFW-LSKVKFLG 897
>gi|77555063|gb|ABA97859.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1806
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 940 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRFGYHQLRIREEDIPKTAFTTRYG 999
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 1000 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 1057
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1058 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1084
>gi|384485807|gb|EIE77987.1| hypothetical protein RO3G_02691 [Rhizopus delemar RA 99-880]
Length = 2970
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 2038 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 2097
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 2098 N----VHVYVDDIVIGTTGDSMEKHYQAVSAV 2125
>gi|341895838|gb|EGT51773.1| hypothetical protein CAEBREN_12621 [Caenorhabditis brenneri]
Length = 1272
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 108 GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIAN 167
G + +IDL++AY + + + L + +Y LPFG+ SAP +F ++ + + N
Sbjct: 563 GKYFTQIDLAEAYLQIELSDQAKDLLCINTHKGIYQFQLLPFGVKSAPGIFQQVMDQLIN 622
Query: 168 YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYL 227
+ YLDD+++ ++ + ++ + + LE+ ++ ++L
Sbjct: 623 GIEGAA----AYLDDIIITGSTIEEHNTRLKKVMSRIHEFGMRMKLEKCKFL-IEEVRFL 677
Query: 228 GIM 230
G +
Sbjct: 678 GFI 680
>gi|326666222|ref|XP_003198219.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1296
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 145/370 (39%), Gaps = 80/370 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY + IR + + + LPFGL +AP VF L
Sbjct: 461 ELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTGHFEYRVLPFGLTNAPAVFQALV 520
Query: 163 NWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ R V VYLDD+L+ ++ + R + L + V E+ V
Sbjct: 521 N---DVLRDMVNRFVFVYLDDILIFSESEQVHTQHVRQVLQRLLENQLYVKAEKCVFH-S 576
Query: 222 QTCQYLGIMWN-----------------PTLDSKSLPLEK----QSTIQRYLLTLTQIQW 260
++ +LG + + P DS+ L++ + +R++ + +
Sbjct: 577 KSVSFLGHIVSTEGIKADPAKVRAVAKWPVPDSRKA-LQRFLGFANFYRRFIRNFSSVAA 635
Query: 261 WSVALHRSSPIFP-----QAPQVF-----------------------VSTDASNSGWGAI 292
AL +SP P QA + F V DAS G GA+
Sbjct: 636 PLTAL--TSPKVPFIWHSQAQEAFDVLKSRFITAPVLCLPDPKRQFIVEVDASEVGIGAV 693
Query: 293 VDNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQS 339
+ S G V S + + I +E+ AVR AL L+ L+ +
Sbjct: 694 LSQRSSRDGKVHPCAFFSHRLSPAERNYDIGNRELLAVRLALGEWRHWLEGAAQPFLVWT 753
Query: 340 DNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKE 398
D++ + YI +S K L +A + L R N +L Y PG N D+LSR +
Sbjct: 754 DHKN-LEYI------RSAKRLSSRQARWALFFGRFNFSLS--YRPGSKNIKPDALSRLFD 804
Query: 399 LPDWHLLPEV 408
+P PE
Sbjct: 805 VPGGEATPEA 814
>gi|88595599|gb|ABD43106.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 48.5 bits (114), Expect = 0.008, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L KIDL Y + IR + R
Sbjct: 6 YQELNRLMMKNKYPLPRIEDLFDQLGGAGTFSKIDLRSGYHQLKIRECDIPKTAFKTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLLGNQDSVLLRSQARA 199
Y +PFGL++AP VF L N + + YL VIV++DD+L+ ++D + R
Sbjct: 66 HYEFVVMPFGLSNAPTVFMDLMNRVFHPYLDKF---VIVFIDDILVYSKDKEQHQEHLRI 122
Query: 200 AVATLQSLRWSVNLERSVLW 219
+ TL+ + ++ W
Sbjct: 123 TLETLRKEKLYAKFKKCEFW 142
>gi|384487229|gb|EIE79409.1| hypothetical protein RO3G_04114 [Rhizopus delemar RA 99-880]
Length = 1021
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 874 IFTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDL 933
Query: 170 RNLGMRVIVYLDDLLLGN-QDSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 934 SN----VHVYVDDIVIGTPGDSMEKHYQAVSAV 962
>gi|326673727|ref|XP_003199969.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1411
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 120/314 (38%), Gaps = 71/314 (22%)
Query: 78 GFQDLGDRA---FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPS 128
G +D G R + +L K + N + +P + LQ+ K+DL AY V I+
Sbjct: 550 GKKDGGLRPCIDYRALNKVTIRNRYPLPLMATAFELLQKATIFSKLDLRNAYHLVRIKQG 609
Query: 129 HQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
+ + Y +PFGL +AP VF L N + + L V VYLDD+L+ +
Sbjct: 610 DEWKTAFNTPTGHYEYLVMPFGLTNAPAVFQALINDVLREM--LNKFVFVYLDDILIFSS 667
Query: 189 DSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNP---TLDSKSL----- 240
S R + LQ V E+ + +LG + P +D K +
Sbjct: 668 SLQEHESHVRKVLKRLQENHLFVKHEKCEFHTTEVL-FLGFIIKPGQVQMDPKKVQAVLD 726
Query: 241 -PLEKQ-STIQRY--------------------LLTLTQ-----IQWWSVA------LHR 267
P +QR+ L LT+ I W A L R
Sbjct: 727 WPAPTSVKEVQRFIGFANFYRKFVQNFSSVVAPLTALTKVGSARISWNPEAEAAFRELKR 786
Query: 268 ---SSPIF----PQAPQVFVSTDASNSGWGAIVDNHS----------LGGVWSDHQEMWH 310
S+PI P+ P V V DAS+ G GA++ L S + +H
Sbjct: 787 RFTSAPILTIPNPELPFV-VEVDASDVGVGAVLSQRGKDNCLHPCAFLSHRLSSCECNYH 845
Query: 311 INLKEMFAVRSALE 324
+ +E+ AV+ ALE
Sbjct: 846 VGDRELLAVKLALE 859
>gi|4809000|gb|AAD30054.1| pol polyprotein [Walleye epidermal hyperplasia virus 2]
Length = 1246
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTNWIANYLRNL 172
IDLS A+F VP+ P Q + + Y T LP G +P +F++ L + ++ +L
Sbjct: 264 IDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLSKIKDSL 323
Query: 173 GMRVIVYLDDLLLGN 187
V +Y+DD+L+ +
Sbjct: 324 TSEVCIYMDDVLIAS 338
>gi|384494764|gb|EIE85255.1| hypothetical protein RO3G_09965 [Rhizopus delemar RA 99-880]
Length = 1807
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 874 IFTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDL 933
Query: 170 RNLGMRVIVYLDDLLLGN-QDSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 934 SN----VHVYVDDIVIGTPGDSMEKHYQAVSAV 962
>gi|126470857|dbj|BAF48320.1| reverse transcriptase [Pyropia yezoensis]
Length = 125
Score = 48.5 bits (114), Expect = 0.008, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 89 SLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
+L K + N + +P D L++ + KIDL Y + + P + + LY
Sbjct: 1 ALNKATIKNAYPLPRIDDIFDQLRKAKYFTKIDLRSDYHQIRLDPETIPLTAFRTKYGLY 60
Query: 143 CMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
T +PFGL +AP VF L N + YL + + VYLDD+L+
Sbjct: 61 EFTFVPFGLTNAPAVFMNLMNAVFRPYLYDF---ICVYLDDILV 101
>gi|2343271|gb|AAC59311.1| pol polyprotein [Walleye epidermal hyperplasia virus 2]
Length = 1246
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTNWIANYLRNL 172
IDLS A+F VP+ P Q + + Y T LP G +P +F++ L + ++ +L
Sbjct: 264 IDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLSKIKDSL 323
Query: 173 GMRVIVYLDDLLLGN 187
V +Y+DD+L+ +
Sbjct: 324 TSEVCIYMDDVLIAS 338
>gi|78708468|gb|ABB47443.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1494
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P L+ KIDL Y + IR + R
Sbjct: 623 YRALNEVTIKNKYPLPRIDDLFNQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 682
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 683 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 740
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 741 LGKLREHQLYAKLSKCEFW-LSEVKFLG 767
>gi|108709232|gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
KIDL Y + ++ + + + LY +PFGL +AP F +L N +
Sbjct: 145 FCKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAF- 203
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+G V+VY DD+L+ ++ RA L+ R NLE+ +LG +
Sbjct: 204 -IGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFC-TDRVSFLGYV 261
Query: 231 WNP 233
P
Sbjct: 262 VTP 264
>gi|384498547|gb|EIE89038.1| hypothetical protein RO3G_13749 [Rhizopus delemar RA 99-880]
Length = 1245
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 396 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 455
Query: 171 NLGMRVIVYLDDLLLGNQ-DSVLLRSQARAAV 201
N V VY+DD+++G DS+ QA +AV
Sbjct: 456 N----VHVYVDDIVIGTPGDSMEKHYQAVSAV 483
>gi|77555354|gb|ABA98150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1480
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
LL+ +DG + + + +L + + N + +P D L+ KIDL Y +
Sbjct: 687 LLVKKKDGSERMVI-DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLK 745
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY T + FGL +AP F L N I ++ L V+V++DD+L
Sbjct: 746 IRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKI--FMEYLDQFVVVFIDDIL 803
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
+ +++ R + L++ + + W
Sbjct: 804 IYSRNEEEHAEHLRLIMEKLRNPQLFAKFSKCEFW 838
>gi|147828190|emb|CAN73047.1| hypothetical protein VITISV_034648 [Vitis vinifera]
Length = 126
Score = 48.5 bits (114), Expect = 0.008, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L R + K+DL Y+ V I + + V R
Sbjct: 5 YRALNKVTVKNKYPIPLIADLFDQLGRVRYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG 64
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F L N I + YL V+VYL+D+++
Sbjct: 65 SYEFLVMPFGLTNAPATFCTLMNKIFHPYLDKF---VVVYLNDIVI 107
>gi|254587296|emb|CAX83705.1| Gag-Pol polyprotein [Schistosoma japonicum]
Length = 1507
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTN- 163
L + KIDL+ AY + P+ Q L++ LY LP G+ AP +F ++ +
Sbjct: 698 LNGAKYFAKIDLADAYLQTAVDPASQPLLTINTHRGLYQYKRLPSGVKPAPAIFQQIMDT 757
Query: 164 WIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+AN V VYLDD+++ L ++ + + + + + E+ + + +
Sbjct: 758 MLAN-----SPGVAVYLDDVIVTGSSKSELFNRLDSVLTKISEYGFYLKEEKCTFF-MDS 811
Query: 224 CQYLGIMWN 232
+YLG +++
Sbjct: 812 VKYLGFIFD 820
>gi|77554349|gb|ABA97145.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 495 YRALNEVTIKNKYPLPRIDDLFDQLKGATMFSKIDLRSGYHQLRIREEDIPKTAFITRYG 554
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 555 LFECTDMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSKEEHEQHLRLV 612
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 613 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 643
>gi|326667016|ref|XP_003198453.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1296
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 145/370 (39%), Gaps = 80/370 (21%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY + IR + + + LPFGL +AP VF L
Sbjct: 461 ELLQGAKVFTKLDLRNAYHLIRIREGDEWKTAFNTPTGHFEYRVLPFGLTNAPAVFQALV 520
Query: 163 NWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
N + LR++ R V VYLDD+L+ ++ + R + L + V E+ V
Sbjct: 521 N---DVLRDMVNRFVFVYLDDILVFSESEQVHTQHVRQVLQRLLENQLYVKAEKCVFH-S 576
Query: 222 QTCQYLGIMWN-----------------PTLDSKSLPLEK----QSTIQRYLLTLTQIQW 260
++ +LG + + P DS+ L++ + +R++ + +
Sbjct: 577 KSVSFLGHIVSTEGIKADPAKVRAVAKWPVPDSRKA-LQRFLGFANFYRRFIRNFSSVAA 635
Query: 261 WSVALHRSSPIFP-----QAPQVF-----------------------VSTDASNSGWGAI 292
AL +SP P QA + F V DAS G GA+
Sbjct: 636 PLTAL--TSPKVPFIWHSQAQEAFDVLKSRFITAPVLCLPDPKRQFIVEVDASEVGIGAV 693
Query: 293 VDNHSL--GGV---------WSDHQEMWHINLKEMFAVRSALERKLPVLQDKV--VLIQS 339
+ S G V S + + I +E+ AVR AL L+ L+ +
Sbjct: 694 LSQRSSRDGKVHPCAFFSHRLSPAERNYDIGNRELLAVRLALGEWRHWLEGAAQPFLVWT 753
Query: 340 DNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQKE 398
D++ + YI +S K L +A + L R N +L Y PG N D+LSR +
Sbjct: 754 DHKN-LEYI------RSAKRLSSRQARWALFFGRFNFSLS--YRPGSKNIKPDALSRLFD 804
Query: 399 LPDWHLLPEV 408
+P PE
Sbjct: 805 VPGGEATPEA 814
>gi|291224973|ref|XP_002732476.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 1346
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 89 SLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
+L K ++ + +P+ L G F K+DLS AY + + Q ++ +Y
Sbjct: 496 TLNKALCVDRYPIPNVEDLYAKLAGGKFFTKLDLSHAYQQLLLDEESQNLTAINTNKGIY 555
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
T LP+G+++AP +F + + ++ + M VY+DD+L+
Sbjct: 556 AYTRLPYGISAAPGIFQRT---MEQTVQGISM-TAVYIDDILV 594
>gi|13129460|gb|AAK13118.1|AC080019_10 Polyprotein [Oryza sativa Japonica Group]
Length = 1781
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P + L+ KIDL Y + IR + R
Sbjct: 910 YRALNEVTIKNKYPLPRIDDLFNQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 969
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 970 LYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1027
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1028 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1054
>gi|269146448|gb|ACZ28170.1| reverse transcriptase-like polymerase [Simulium nigrimanum]
Length = 339
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
F IDL Q ++ +P+R ++ + Y LP GL ++P VF ++ N I L
Sbjct: 188 FFTSIDLVQGFYQIPLREEDRKKTAFSGPTGKYEFLRLPMGLKNSPAVFXRMLNDI---L 244
Query: 170 R-NLGMRVIVYLDDLL 184
R ++G+R VY+DD++
Sbjct: 245 RDDIGIRCFVYVDDII 260
>gi|225729504|gb|ACO24695.1| pol protein [Human immunodeficiency virus 1]
Length = 353
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYCMTCLPFGLASA 154
P L++ J JD+ AYF VP+ P +++ + T Y LP G +
Sbjct: 196 PAGLKKKKSJXVJDVGDAYFSVPLDPDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGS 255
Query: 155 PQVFAKLTNWIANYLRNLGMRVIV--YLDDLLLGNQDSVLLRSQARAAVATLQSLRWS 210
P +F I R +I+ Y+DDLL+G S L Q RA + L+ W
Sbjct: 256 PAIFQASMTKILEPFRKQNPEIIIYQYVDDLLIG---SDLETGQHRAKIEELREYLWK 310
>gi|384498665|gb|EIE89156.1| hypothetical protein RO3G_13867 [Rhizopus delemar RA 99-880]
Length = 1767
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLR 170
+DL A+ +PIR S Q + +R+ Y PFGL F ++ N I + L
Sbjct: 847 FTSLDLKSAFHRLPIRKSDQVKTTFTHRNKQYMFRSAPFGLKHVSSHFMRIMNLILSDLS 906
Query: 171 NLGMRVIVYLDDLLLGN-QDSVLLRSQARAAV 201
N V Y+DD+++G DS+ R QA +AV
Sbjct: 907 N----VHEYVDDIVIGTPGDSMEKRYQAVSAV 934
>gi|326670757|ref|XP_003199287.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1404
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL Y V IR + + V Y +P+GL +AP VF N+
Sbjct: 510 LRSAKIFTKLDLRSTYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVF---QNF 566
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + +IVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 567 IHEVLREFLHLFIIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKTEKCSFH-LPS 625
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 626 VQFLGYV 632
>gi|242811437|ref|XP_002485748.1| gag/polymerase/env polyprotein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218714087|gb|EED13510.1| gag/polymerase/env polyprotein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 322
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R K+D+ Q + + + P +++ + YR + Y +PFGL + P F + N
Sbjct: 179 LSRARIFTKLDIRQGFHRICMDPDSEKYTTFQYRYSTYKYKVMPFGLTNGPATFQQFMND 238
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ ++ L +I ++DDLL+
Sbjct: 239 V--FMDCLDRFLIAFVDDLLI 257
>gi|77550763|gb|ABA93560.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1469
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ SL + + N + +P D L+ KIDL Y + IR + R
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTRDIPKTAFSTRYG 657
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L N + ++ L V+V++DD+L+ ++D +
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDILIYSKDEEEHAEHLQLV 715
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W ++ +LG
Sbjct: 716 LEKLRKHKLYAKFSKCEFW-LKEVAFLG 742
>gi|301632042|ref|XP_002945100.1| PREDICTED: hypothetical protein LOC100486317 [Xenopus (Silurana)
tropicalis]
Length = 1166
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 281 STDASNSGWGAIVDNHSLGGVW--SDHQEMWHINLK--EMFAVRSALERKLPVLQDKVVL 336
S A++ G+GAI +H W S H++ NL E F + LE L +K +L
Sbjct: 801 SDAAASVGFGAIFLSHWCVDTWPISWHEQNLTSNLVLLEFFPILVVLEIWGEQLANKRIL 860
Query: 337 IQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+DN VV ++ + S +LR + + A+RHNI + A++IPG N AD+LSR
Sbjct: 861 WHTDNMGVV-FVLNNLSSNSPPVLRLLRQVVFRALRHNIWIKAKHIPGYKNNVADALSR 918
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAP---QVFAKLTN 163
+G L K D+ A+ +PI P L + Y CLP G + + + FA
Sbjct: 562 KGALLAKSDIESAFRLLPIHPDCWHLLGFHFEGQFYYDCCLPMGCSLSCFYFEAFATFLE 621
Query: 164 WIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRW-------SVNLERS 216
W+ + + V+ YLDD L + +Q+ + L++ W ++ E++
Sbjct: 622 WVVQFESGSNL-VLHYLDDFLF------IGPAQSNHCLLLLKTFMWVAKKFGVPLSAEKT 674
Query: 217 VLWPVQTCQYLGIMWNPTLDSKSLPLEK 244
V +P + Q+LGI + LP++K
Sbjct: 675 V-FPCTSLQFLGIEIDTVKQEFRLPVDK 701
>gi|326669631|ref|XP_003199052.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1379
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 146/371 (39%), Gaps = 83/371 (22%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
+ LQ K+DL AY V IR + + Y +PFGLA+AP VF
Sbjct: 552 EILQGATIFTKLDLRSAYHLVRIRQGDEWKTAFNTPTGHYEYQVMPFGLANAPAVFQSFI 611
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + + L + V VYLDD+L+ + + R + L V LE+S V
Sbjct: 612 NDVLREM--LNIFVFVYLDDILIFSHNPEEHVIHVRKVLIELLKHGLFVKLEKSEFH-VS 668
Query: 223 TCQYLGIMWNPTLDSKSLPLEKQST--------------IQRY----------------- 251
+ +LG + + SL ++ T +QR+
Sbjct: 669 SVSFLGFI----VSKGSLQMDPSKTRAVLDWPQPTSFKEVQRFLGFANFYRRFIRNFSSI 724
Query: 252 ---LLTLTQ-----IQW-------WSVALHR--SSPIF----PQAPQVFVSTDASNSGWG 290
L +LT+ W ++ HR S+PI P+ P + DAS+ G G
Sbjct: 725 AEPLTSLTKKANTPFTWNDKASTAFNTLKHRFTSAPILTLPDPELP-FILEVDASDIGVG 783
Query: 291 AIV------DNHSLGGVWSDH-----QEMWHINLKEMFAVRSALERKLPVLQ--DKVVLI 337
A++ DN + H Q + I +++ A++ ALE L+ LI
Sbjct: 784 AVLSQRSKADNKLHPCAFYSHRLTPTQANYDIGNRKLLAIKLALEEWRHWLEGASHPFLI 843
Query: 338 QSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSRQ 396
+D+Q ++YI ++ K L +A + L R TL R PG N D+LSRQ
Sbjct: 844 WTDHQN-LTYI------QNAKRLNARQARWSLFFNRFKFTLSFR--PGSKNIKPDALSRQ 894
Query: 397 KELPDWHLLPE 407
E + PE
Sbjct: 895 FEPSEKPCCPE 905
>gi|291192125|gb|ADD83126.1| reverse transcriptase [Cucumis hystrix]
Length = 143
Score = 48.1 bits (113), Expect = 0.008, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y + IR S + R
Sbjct: 6 YKKLNKVTIKNKYSLPRVEDLFDQLQGATVFSKIDLRSGYHQLRIRDSDISKTAFRSRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y + FGL +AP F +L N + + L + VIV++DD+L+ ++
Sbjct: 66 HYEFIVMSFGLTNAPAAFMELMNRV--FKDFLDISVIVFIDDILVYSKTEAEHEEHLHQV 123
Query: 201 VATLQSLRWSVNLERSVLW 219
+ TL++ + + V W
Sbjct: 124 LETLRANKLYAKFSKCVFW 142
>gi|254587298|emb|CAX83706.1| Gag-Pol polyprotein [Schistosoma japonicum]
Length = 1349
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G + K+DLS AY V + +L++ LY LPFG+ AP +F +L +
Sbjct: 585 LNGGRYFAKLDLSDAYLQVEDDEDSKPYLTINTHRGLYQYNRLPFGVKPAPAIFQQLMDI 644
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTC 224
+ + L V YLDD+++ + L S+ + + + + + + +Q+
Sbjct: 645 MISNLDG----VAAYLDDIIVVDSSKEELLSRLDKVLTRISQSGFQLQKHKCEFF-LQSV 699
Query: 225 QYLGIMWN 232
+YLG +++
Sbjct: 700 KYLGFIFD 707
>gi|22711560|gb|AAM01170.2|AC113336_22 Putative retroelement [Oryza sativa Japonica Group]
gi|78707947|gb|ABB46922.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 49 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 108
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+Y T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 109 VYEFTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 166
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 167 LGKLREHQLYAKLSKCEFW-LSEVKFLG 193
>gi|254587275|emb|CAX83694.1| Gap-Pol polyprotein [Schistosoma japonicum]
Length = 1360
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + +DL+ Y+ V IRP ++ + V LY +PFGL +AP F +L
Sbjct: 535 DALGGAQWFSTLDLASRYWQVEIRPKDRQKTAFVIPTGLYEFETMPFGLTNAPATFQRLI 594
Query: 163 NWIANYLRNLGMRVIVYLDDLLL 185
+ + L + R ++YLDD+++
Sbjct: 595 QTVLDGL--VPKRCLIYLDDIIV 615
>gi|291224971|ref|XP_002732475.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 1173
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 89 SLKKFHLINHFRVPDF------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLY 142
+L K ++ + +P+ L G F K+DLS AY + + Q ++ +Y
Sbjct: 323 TLNKALCVDRYPIPNVEDLYAKLAGGKFFTKLDLSHAYQQLLLDEESQNLTAINTNKGIY 382
Query: 143 CMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
T LP+G+++AP +F + + ++ + M VY+DD+L+
Sbjct: 383 AYTRLPYGISAAPGIFQRT---MEQTVQGISM-TAVYIDDILV 421
>gi|270356908|gb|ACZ80693.1| putative retrotransposon nucleocapsid protein [Filobasidiella
depauperata]
Length = 1481
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L + KIDL AY + I+ + + R LY +PFGL +AP F L
Sbjct: 577 DRLSEASWFSKIDLRAAYHLIRIKKGDEWKTAFRTRYGLYEYQVMPFGLTNAPASFQNLI 636
Query: 163 NWIANYLRN-LGMRVIVYLDDLLL 185
N + LR L + VIVYLDD+L+
Sbjct: 637 N---DVLREYLDLSVIVYLDDILI 657
>gi|108862521|gb|ABA97778.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1557
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D L+ KIDL Y + IR + + R L+ T + FGL +AP F L
Sbjct: 719 DQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLM 778
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
N + ++ L V+V++DD+L+ ++ R + L+ + + W ++
Sbjct: 779 NKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFW-LK 835
Query: 223 TCQYLGIMWN 232
Q+LG + N
Sbjct: 836 EVQFLGHIVN 845
>gi|77176809|gb|ABA64518.1| reverse transcriptase [Brasenia schreberi]
Length = 117
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L K + N + +P D L + K+DL Y+ V I + + V R
Sbjct: 10 YRALNKVTVKNKYPLPLIADLFDQLGQARVFSKLDLRSGYWQVRIADGDEAKTTCVTRYG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWI-ANYLRNLGMRVIVYLDDLLL 185
Y +PFGL +AP F+ L N I +L N V+VYLDD+L+
Sbjct: 70 AYEFLVMPFGLTNAPATFSTLMNKIFYPFLDNF---VVVYLDDILI 112
>gi|326673646|ref|XP_003199949.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1320
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 140/354 (39%), Gaps = 78/354 (22%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ F K+DL AY V IR + + + LPFGL++AP VF L N
Sbjct: 496 LQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVN- 554
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR+ L + VYLDD+L+ + R + L V E+ V Q+
Sbjct: 555 --DVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-AQS 611
Query: 224 CQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQW- 260
+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 612 VPFLGHIVSVEGMRMDPEKVQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLAAP 669
Query: 261 ------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIVDN 295
WS VA R F AP Q V DAS G GAI+
Sbjct: 670 LTALTSLKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQ 729
Query: 296 HS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQ 342
S ++ ++ + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 730 RSSSDGKMHPCAYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHK 789
Query: 343 TVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L R + ++ Y PG N D+LSR
Sbjct: 790 N-LEYI------QSAKRLNSRQARWALFFGRFDFSIS--YRPGSKNVKPDALSR 834
>gi|108864177|gb|ABA92306.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1920
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 109 DFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANY 168
D L +D Y + + + + + YC T +PFGL +A F + T +
Sbjct: 912 DLLCFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRI--SL 969
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
LG V Y+DDL++ ++ +L S +L+S R +N ++ V V T + LG
Sbjct: 970 GNQLGRNVEAYVDDLVVKTRNQEMLLSDLAETFESLRSARIKLNPDKCVFG-VPTGKLLG 1028
Query: 229 IM 230
+
Sbjct: 1029 FL 1030
>gi|340381314|ref|XP_003389166.1| PREDICTED: hypothetical protein LOC100636756 [Amphimedon
queenslandica]
Length = 1451
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R ++ KF RV + + R G F+ +DL++ Y+ +P+ S Q + + L
Sbjct: 1074 RKLNNVSKFDAYPIPRVDEMIDRMGSGKFITTLDLNKGYWQIPVEKSSQEKTAFITPMGL 1133
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQ 188
Y +PFGL AP F +L + + LR Y+DD+ + ++
Sbjct: 1134 YEFVTMPFGLRGAPATFQRLMDRV---LRGTEQFAGAYIDDVAIHSE 1177
>gi|38346018|emb|CAE03957.2| OSJNBb0085H11.6 [Oryza sativa Japonica Group]
Length = 686
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 136 YRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 195
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + Y+ L V+V++DD+L+ ++ R A
Sbjct: 196 LFECTVMSFGLTNAPAFFMNLMNKV--YMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 253
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W + ++LG
Sbjct: 254 LEKLREHQLYAKFSKCKFW-LPEVKFLG 280
>gi|38347243|emb|CAD39356.2| OSJNBa0059H15.7 [Oryza sativa Japonica Group]
Length = 920
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVP 124
L + +DG + + SL + + N + +P + L+ KIDL Y +
Sbjct: 164 LFVKKKDGSMRMC-VDYRSLNEVTIKNKYPLPRIDDLFNHLKGAKVFSKIDLRSGYHQLK 222
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLL 184
IR + R LY + FGL +AP F L N + ++ L V+V++DD+L
Sbjct: 223 IRTGDIPKTAFSTRYGLYEFIVMSFGLTNAPAYFMNLMNKV--FMDYLDKFVVVFIDDIL 280
Query: 185 LGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ ++D R + LQ + + W ++ +LG
Sbjct: 281 IYSKDEEEHAEHLRLVLEKLQKHKLYAKFSKCEFW-LKEVAFLG 323
>gi|147768751|emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]
Length = 1323
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 29/215 (13%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
KIDL Y + R + S +D LY +PFGL +AP F ++ + +
Sbjct: 599 KIDLRSGYHQIRXRLGDEWKTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLKPF--I 656
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG--IM 230
G +VY DD+L+ ++ + + V ++ V WPV T + G +
Sbjct: 657 GRFFVVYFDDILIYSRXCEDHKEHLKQGVEXDPE-----KIKAIVDWPVPTNIHEGAKLP 711
Query: 231 WNPTL--DSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVF-VSTDASNS 287
WN + +K+ K + +L L + +VF V+ DAS+
Sbjct: 712 WNGYILVANKAFEEIKSKMVNPXILRLXDFE-----------------KVFEVACDASHV 754
Query: 288 GWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSA 322
G GA++ + +H+ + ++N ++ R A
Sbjct: 755 GIGAVLSQEGHPVAFFNHEVLRYLNSQKKLNSRXA 789
>gi|4406792|gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 764
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 109 DFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANY 168
+ L +D Y +P+ Q S + YC +PFGL + + +L N + +
Sbjct: 582 ELLSFMDAFSGYNQIPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQM--F 639
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
LG + VY+DD+L+ + S +A TL +N + L+ V + ++LG
Sbjct: 640 APQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNMKLNPAK-CLFGVTSGEFLG 698
>gi|21742535|emb|CAD40160.1| OSJNBb0069N01.2 [Oryza sativa Japonica Group]
gi|38344505|emb|CAE05184.2| OSJNBa0013A04.21 [Oryza sativa Japonica Group]
Length = 1717
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 870 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 929
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L + ++ L V+V++DD+L+ +Q + R
Sbjct: 930 LYEFTVMSFGLTNAPAFFMNLMKKV--FMEYLDKFVVVFIDDILVYSQSEEDHKHHLRLV 987
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 988 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1014
>gi|391329008|ref|XP_003738971.1| PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus
occidentalis]
Length = 339
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L G+ IDL++AY VP+ Q+ L++ L+ + LPFG+ SA +F ++ +
Sbjct: 262 LNGGELFSHIDLAEAYLQVPLDGESQQILTIYTPKGLFNVKRLPFGIKSATSIFQRIMDE 321
Query: 165 IANYLRNLGMRVIVYLDDLLL 185
+ L V+ YLDD+++
Sbjct: 322 LIAGLDG----VMAYLDDIVV 338
>gi|108864417|gb|ABA93974.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1343
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + + R
Sbjct: 629 YRALNEVTIKNKYPLPRIDDLFDQLKGAIVFSKIDLRSGYHQLRIREEDIPKTAFITRYG 688
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ R
Sbjct: 689 LFECTVMSFGLTNAPAFFMNLMNKV--FMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 746
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLGIMWN 232
+ L+ + + W ++ Q+LG + N
Sbjct: 747 LEKLKEHQLYAKFSKCDFW-LKEVQFLGHIVN 777
>gi|88595697|gb|ABD43155.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D LQ KIDL Y+ + ++ S + R Y +PFGLA+AP VF L
Sbjct: 28 DQLQGASVFSKIDLRSGYYQLRVKESDIPKTAFRTRYGHYEFVVMPFGLANAPAVFMHLM 87
Query: 163 NWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLW 219
N I ++ +L V+V+++D+L+ ++ ++ L++ + + V W
Sbjct: 88 NKI--FIEHLDTCVVVFINDILIYSRSEEEHARHLHLVLSILRAHQLYAKFSKCVFW 142
>gi|38605882|emb|CAD40008.3| OSJNBb0052B05.11 [Oryza sativa Japonica Group]
Length = 1232
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 472 YRALNEVTIKNKYPLPRIDDLFDQLKGVTVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 531
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY +T + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 532 LYEITVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 589
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 590 LGKLREHQLYAKLSKCEFW-LSEVKFLG 616
>gi|326670755|ref|XP_003199286.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1375
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L+ K+DL Y V IR + + V Y +P+GL +AP VF N+
Sbjct: 510 LRSAKIFTKLDLRSTYNLVRIRRGDEWKTAFVTPTGHYEYRVMPYGLVNAPSVFQ---NF 566
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
I LR L + +IVY+DD+L+ +++ V R + TL+ + + E+ + +
Sbjct: 567 IHEVLREFLHLFIIVYIDDILIYSRNEVEHRHHVEKVLQTLRKHQLYLKTEKCSFH-LPS 625
Query: 224 CQYLGIM 230
Q+LG +
Sbjct: 626 VQFLGYV 632
>gi|326670560|ref|XP_003199240.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1320
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 140/354 (39%), Gaps = 78/354 (22%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
LQ F K+DL AY V IR + + + LPFGL++AP VF L N
Sbjct: 496 LQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVN- 554
Query: 165 IANYLRN-LGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQT 223
+ LR+ L + VYLDD+L+ + R + L V E+ V Q+
Sbjct: 555 --DVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFH-AQS 611
Query: 224 CQYLG------------------IMWNPTLDSKSLPLEK----QSTIQRYLLTLTQIQW- 260
+LG + W PT DS+ L++ + +R++ +Q+
Sbjct: 612 VPFLGHIVSVEGMRMDPEKVQAVVDW-PTPDSRKA-LQRFLGFANFYRRFIRNFSQLAAP 669
Query: 261 ------------WS----VALHRSSPIFPQAP---------QVFVSTDASNSGWGAIVDN 295
WS VA R F AP Q V DAS G GAI+
Sbjct: 670 LTALTSLKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQ 729
Query: 296 HS-----------LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVV--LIQSDNQ 342
S ++ ++ + I +E+ AV+ ALE L+ V ++ +D++
Sbjct: 730 RSSSDGKMHPCAYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHK 789
Query: 343 TVVSYIHKEGGTKSFKLLREVEALFDLAV-RHNITLMARYIPGKFNTWADSLSR 395
+ YI +S K L +A + L R + ++ Y PG N D+LSR
Sbjct: 790 N-LEYI------QSAKRLNSRQARWALFFGRFDFSIS--YRPGSKNVKPDALSR 834
>gi|19881768|gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1449
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 568 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 627
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + ++ L V+V++DD+L+ ++ + R A
Sbjct: 628 LFECTVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSKTKEEHKEHLRLA 685
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W + ++LG
Sbjct: 686 LEKLREHQLYAKFSKCEFW-LSEVKFLG 712
>gi|88595681|gb|ABD43147.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ LK + N + +P D L KIDL Y + I+ + R
Sbjct: 6 YRELKSLTIKNKYPLPRIEDLFDQLGGAGVFSKIDLRSGYHQLKIKKGDIPKTAFRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
Y +PFGL +AP VF L N + + L +IV++DD+L+ +++ R A
Sbjct: 66 HYEFVVMPFGLTNAPAVFMDLMNRV--FQPYLDKFIIVFIDDILVYSKNKKEHEEHLRVA 123
Query: 201 VATLQSLRWSVNLERSVLW 219
++ L+ + + V W
Sbjct: 124 LSALRKEKLYAKFSKCVFW 142
>gi|89179358|gb|ABD63096.1| Gag-pol polyprotein, putative [Asparagus officinalis]
Length = 560
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-L 161
D + R KID Y + IRPS + + +D LY +PFGL +AP +F + +
Sbjct: 46 DLMSRVTIFSKIDFKSGYHQIHIRPSDEWKTAFKIKDGLYEWMVMPFGLTNAPSIFMRVM 105
Query: 162 TNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
T + + N +++Y D++L+ R A L+ + N ++
Sbjct: 106 TQVLRLFTENF---LVMYFDEILIYRNSREQHVDHLRQVCAVLRKEQLYANTKKCTFLTR 162
Query: 222 QTCQYLGIM 230
Q +LG +
Sbjct: 163 QVI-FLGFV 170
>gi|88595441|gb|ABD43027.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 143
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N + +P D LQ KIDL Y + IR S + R
Sbjct: 6 YRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRKSDIPKSAFRSRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
Y +PFGL +AP VF +L N + ++ L V+V++DD+L+ +++
Sbjct: 66 HYEFVVMPFGLTNAPAVFMQLMNRV--FIEYLDKFVVVFIDDILIYSKN 112
>gi|116309482|emb|CAH66551.1| OSIGBa0106G08.4 [Oryza sativa Indica Group]
gi|116309628|emb|CAH66681.1| OSIGBa0127B24.1 [Oryza sativa Indica Group]
Length = 686
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 136 YRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 195
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
L+ T + FGL +AP F L N + Y+ L V+V++DD+L+ ++ R A
Sbjct: 196 LFECTVMSFGLTNAPAFFMNLMNKV--YMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 253
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + + W + ++LG
Sbjct: 254 LEKLREHQLYAKFSKCKFW-LPEVKFLG 280
>gi|292619409|ref|XP_001334195.3| PREDICTED: hypothetical protein LOC794259 [Danio rerio]
Length = 2571
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 85 RAFLSLKKFHLINHFRVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTL 141
R S+ KF R+ D R FL IDLS+ Y+ +P+ P + + L
Sbjct: 1585 RYLNSVTKFDAYPTPRISDLTDRLGTSKFLTTIDLSKGYWQIPLTPQSRELTAFKTPWGL 1644
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAV 201
+ L FGL AP F +L + + LR L YLDD+++ + + +
Sbjct: 1645 FHFKVLAFGLHGAPASFQRLMDQV---LRGLPF-TAAYLDDIVVYSDTWQQHLQHLQEVL 1700
Query: 202 ATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
LQ+ +VN ++ + +T +YLG +
Sbjct: 1701 QRLQAAGLTVNPQKCTIAKAET-EYLGFV 1728
>gi|58532097|emb|CAD40058.3| OSJNBa0085C10.10 [Oryza sativa Japonica Group]
Length = 1785
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 904 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 963
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY + FGL +AP F L N + ++ L V+V++DD+L+ +Q + R
Sbjct: 964 LYEFAVMSFGLTNAPAFFMNLMNKV--FMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1021
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 1022 LGKLREHQLYAKLSKCEFW-LSEVKFLG 1048
>gi|88595659|gb|ABD43136.1| reverse transcriptase [Orobanche ramosa]
Length = 143
Score = 48.1 bits (113), Expect = 0.010, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L + + N + +P D L+ KIDL Y + IR +V R
Sbjct: 6 YRELNRLTVKNKYPLPRIEDLFDQLREAGIFSKIDLRFGYHQLKIREGDILKTAVRTRYG 65
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
+ +PFGL++AP VF L N + + L +IV++DD+L+ ++D + R A
Sbjct: 66 HFEFIVMPFGLSNAPTVFMDLMNRV--FQPYLDKFMIVFIDDILVYSKDKEQHQEHLRVA 123
Query: 201 VATLQ 205
+ TL+
Sbjct: 124 LETLR 128
>gi|350646870|emb|CCD58591.1| choline/ethanolamine kinase, putative [Schistosoma mansoni]
Length = 946
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 24/196 (12%)
Query: 80 QDLGDRA----FLSLKKFHLINHFRVP---DF---LQRGDFLVKIDLSQAYFHVPIRPSH 129
++ GDR + +L + + + + +P DF LQ + KI L +AY ++P+
Sbjct: 130 KNEGDRRPCGDYRALNRQTVPDRYPIPHIQDFTNGLQGMNIFTKIGLVRAYHNIPVADED 189
Query: 130 QRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
++ L+ +PFGL +A Q F + ++ N LR++ Y+DDLL+ + D
Sbjct: 190 IPKTAITTPFGLFEFVRMPFGLRNAAQTFQR---FMDNLLRDMPF-AQGYIDDLLIASPD 245
Query: 190 SVLLRSQARAAVATLQSLRWS-VNLERS-VLWPVQTCQYLGIMWNPTLDSKSLPLEKQST 247
L+S + L+ L + +N+ +S ++ VQT ++L +P P++K T
Sbjct: 246 ---LQSHEQHVKTVLKRLDENGINIHQSKCVFGVQTLEFLSHTISP---EGIKPIKKVDT 299
Query: 248 IQRYLL--TLTQIQWW 261
I++Y + +LTQ++ +
Sbjct: 300 IKQYPIPSSLTQLRSF 315
>gi|55168124|gb|AAV43991.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ +L + + N + +P D L+ KIDL Y + IR + R
Sbjct: 639 YRALNEATIKNKYSLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 698
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAA 200
LY T + FGL +AP F L + + ++ L V+V++DD+L+ +Q + R
Sbjct: 699 LYEFTVMSFGLTNAPAFFVNLMSKV--FMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 756
Query: 201 VATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ L+ + L + W + ++LG
Sbjct: 757 LGKLREHQLYAKLSKCEFW-LSEVKFLG 783
>gi|62082783|gb|AAX62220.1| reverse transcriptase [Cycas revoluta]
Length = 115
Score = 48.1 bits (113), Expect = 0.010, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 87 FLSLKKFHLINHFRVP------DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT 140
+ L K + N F P D + K+DL Y+ +PI P +
Sbjct: 10 YRELNKITIKNKFPTPRIDGMLDEIHGATIFSKLDLQSGYYQIPIAPQDCHKTTFRTHHG 69
Query: 141 LYCMTCLPFGLASAPQVFAKLTNWIAN-YLRNLGMRVIVYLDDLLL 185
+ +PFG+ +AP F L N I YLR VIV+ DDLL+
Sbjct: 70 HFEFRAMPFGVCNAPATFQALMNRIFRPYLRKF---VIVFFDDLLI 112
>gi|62733775|gb|AAX95884.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1920
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 109 DFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANY 168
D L +D Y + + + + + YC T +PFGL +A F + T +
Sbjct: 912 DLLCFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRI--SL 969
Query: 169 LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
LG V Y+DDL++ ++ +L S +L+S R +N ++ V V T + LG
Sbjct: 970 GNQLGRNVEAYVDDLVVKTRNQEMLLSDLAETFESLRSARIKLNPDKCVFG-VPTGKLLG 1028
Query: 229 IM 230
+
Sbjct: 1029 FL 1030
>gi|360043522|emb|CCD78935.1| KRAB-A domain-containing protein [Schistosoma mansoni]
Length = 1293
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 103 DFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLT 162
D ++ + +DL+ Y+ V +RP ++ + V + LY +PFGL +AP F +L
Sbjct: 488 DAMRGACWFSTLDLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLM 547
Query: 163 NWIANYLRNLGMRVIVYLDDLLL 185
+ + L + + ++YLDD+++
Sbjct: 548 QTVLHGL--VPHKCLIYLDDIIV 568
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,340,903,801
Number of Sequences: 23463169
Number of extensions: 300735790
Number of successful extensions: 1092410
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 4309
Number of HSP's that attempted gapping in prelim test: 1087716
Number of HSP's gapped (non-prelim): 6615
length of query: 460
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 314
effective length of database: 8,933,572,693
effective search space: 2805141825602
effective search space used: 2805141825602
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 79 (35.0 bits)