BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4044
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66403|DPOL_DHBVQ Protein P OS=Duck hepatitis B virus (isolate Shanghai/DHBVQCA34)
GN=P PE=3 SV=1
Length = 788
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEKQSTIQ-RYLLTLTQIQWW 261
+D K + +E+ I+ R ++ +I W
Sbjct: 565 ----IDQKFMKIEESRWIELRTVIKKIKIGAW 592
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 694 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 753
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 754 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 809
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 810 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 867
Query: 256 TQI------------QWWS---VALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 868 SKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGA 927
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 928 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 987
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 988 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAI--- 1036
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1037 -YTITPETSRPI 1047
>sp|P17192|DPOL_HPBDB Protein P OS=Duck hepatitis B virus (isolate brown Shanghai duck
S5) GN=P PE=3 SV=1
Length = 788
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 505 RFNIWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKFMKIEE 574
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 77/372 (20%)
Query: 100 RVPDFLQR---GDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQ 156
R+ + L R +DL Y +P+ P + + V Y T +PFGL +AP
Sbjct: 668 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPS 727
Query: 157 VFAKLTNWIANYLRNLGMRVIVYLDDLL-------------------LGNQDSVLLRSQA 197
FA+ ++A+ R+L V VYLDD+L L N++ ++ + +
Sbjct: 728 TFAR---YMADTFRDLRF-VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKC 783
Query: 198 RAAVATLQSLRWSVNLERSVLWPVQ-TCQYLGIMWNP-TLDSKSLPLEKQSTIQRYLLTL 255
+ A + L +S+ +++ + P+Q C + P T+ L + +R++
Sbjct: 784 KFASEETEFLGYSIGIQK--IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNC 841
Query: 256 TQI------------QW---WSVALHR------SSPI---FPQAPQVFVSTDASNSGWGA 291
++I QW A+ + +SP+ F ++TDAS G GA
Sbjct: 842 SKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGA 901
Query: 292 I---VDNHS----LGGVWSDHQEMWHINLK----EMFAVRSALERKLPVLQDKVVLIQSD 340
+ VDN + + G +S E N E+ + AL +L K +++D
Sbjct: 902 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTD 961
Query: 341 NQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELP 400
+ +++S +K R V+ D ++ TL Y+ G N AD++SR
Sbjct: 962 HISLLSLQNKNEPA------RRVQRWLDDLATYDFTL--EYLAGPKNVVADAISRAV--- 1010
Query: 401 DWHLLPEVTQHI 412
+ + PE ++ I
Sbjct: 1011 -YTITPETSRPI 1021
>sp|P30028|DPOL_HPBDC Protein P OS=Duck hepatitis B virus (strain China) GN=P PE=3 SV=1
Length = 787
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 444 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 503
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 504 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVTEIRFLGYQ 563
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 564 ----IDQKFMKIEE 573
>sp|P17193|DPOL_HPBDW Protein P OS=Duck hepatitis B virus (isolate white Shanghai duck
S31) GN=P PE=3 SV=1
Length = 788
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 445 ISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIAR 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM 230
+ Y+DD LL + ++ L S + A LQ L +N +++ PV ++LG
Sbjct: 505 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNDIRFLGYQ 564
Query: 231 WNPTLDSKSLPLEK 244
+D K + +E+
Sbjct: 565 ----IDQKFMRIEE 574
>sp|P03162|DPOL_DHBV1 Protein P OS=Duck hepatitis B virus (strain United States/DHBV-16)
GN=P PE=3 SV=2
Length = 836
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 493 ISLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 552
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L + + A + LQ L +N +++ PV ++LG
Sbjct: 553 RFNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLG 610
>sp|P0C691|DPOL_DHBV3 Protein P OS=Duck hepatitis B virus (strain Germany/DHBV-3) GN=P
PE=1 SV=1
Length = 786
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL-R 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T + + + R
Sbjct: 443 ISLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISR 502
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + ++ L S + A + LQ L +N +++ PV ++LG
Sbjct: 503 RFNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLG 560
>sp|P13846|DPOL_HHBV Protein P OS=Heron hepatitis B virus GN=P PE=3 SV=1
Length = 788
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 112 VKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWI-ANYLR 170
+ +DLSQA++H+P+ P+ L+V +Y P G+ +P + T I A
Sbjct: 445 ISLDLSQAFYHLPLAPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEIAS 504
Query: 171 NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLG 228
+ Y+DD LL + + L + + A LQ +N ++ PV T ++LG
Sbjct: 505 RFNVWTFSYMDDFLLCHPSARHLNTISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG 562
>sp|Q89703|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF
3 PE=3 SV=1
Length = 652
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 70/349 (20%)
Query: 110 FLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYL 169
+ K D ++H+ + +++ + Y LPFG ++P +F + + I
Sbjct: 296 YYSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRI---F 352
Query: 170 RNLGMRVIVYLDDLLLGNQD-------SVLLRSQARAAVATLQSLRWSVNLERSVLWPVQ 222
R +IVY+DD+L+ ++ R A + + + E+ VQ
Sbjct: 353 RPYYDFIIVYIDDILVFSKTIEEHKIHIAKFRDITLANGLIISKKKTELCKEKIDFLGVQ 412
Query: 223 TCQYLGIMWNPTLDSKSL----PLEKQSTIQRYLLTLTQIQWW----------------- 261
Q GI P + +K L ++ ++ +Q L L QI+ +
Sbjct: 413 IEQ-GGIELQPHIINKILEKHTKIKNKTELQSILGLLNQIRHFIPHLAQILLPIQKKLKI 471
Query: 262 ------------------------SVALHRSSPIFPQAPQVFVSTDASNSGWGAIV---- 293
++ + PI + + DASN+ +G+ +
Sbjct: 472 KDEEIWTWTKEDEEKIKLIQDYSKNLVIKMKYPINKEDMNWIIEVDASNNAYGSCLKYKP 531
Query: 294 DNHSL-------GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVS 346
N + G + ++++ + IN KE+ AV L+ + L+++DN V
Sbjct: 532 KNSKIEYLCRYNSGTFKENEQKYDINRKELIAVYQGLQSYSLFTCEGNKLVRTDNSQVYY 591
Query: 347 YIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+I + KS + R ++ L +N + + I GK N AD LSR
Sbjct: 592 WIKNDTNKKSIE-FRNIKYLLAKIAVYNFEI--QLIDGKTNIIADYLSR 637
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1003
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 165/430 (38%), Gaps = 102/430 (23%)
Query: 83 GDRAFLSLKKFHLINHFRVPDF------------LQRGDFLVKIDLSQAYFHVPIRPSHQ 130
G++ + + F +N +PD L + +DL+ + + ++ S
Sbjct: 174 GEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDI 233
Query: 131 RFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDS 190
+ + Y LPFGL +AP +F ++ + I ++G VY+DD+++ ++D
Sbjct: 234 PKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILR--EHIGKVCYVYIDDIIVFSEDY 291
Query: 191 VLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWN------------------ 232
R +A+L VNLE+S Q ++LG +
Sbjct: 292 DTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV-EFLGYIVTADGIKADPKKVRAISEMP 350
Query: 233 PTLDSKSLP------------LEKQSTIQRYLLTLTQIQWWSVALHRSSPI--------- 271
P K L ++ + + + L LT+ + ++ +SS +
Sbjct: 351 PPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETAL 410
Query: 272 -----------------FPQAPQVF-VSTDASNSGWGAIVDNHSLG---------GVWSD 304
FP + F ++TDASN GA++ G +
Sbjct: 411 QSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNK 470
Query: 305 HQEMWHINLKEMFAVRSALERKLPVLQDK-VVLIQSDNQTVVSYIHKEGGTKSFKL-LRE 362
+E + KEM A+ +L+ L + + +D+Q + + G ++F L+
Sbjct: 471 TEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFAL----GNRNFNAKLKR 526
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPEID 422
+A + +N L+ Y PGK N AD+LSR + P++ Q PE D
Sbjct: 527 WKARIE---EYNCELI--YKPGKSNVVADALSR--------IPPQLNQLSTDLDANPEDD 573
Query: 423 L--FATANSA 430
+ ATA+SA
Sbjct: 574 MQSLATAHSA 583
>sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 2
GN=gag-pro-pol PE=1 SV=4
Length = 1461
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRD-------TLYCMTCLPFGLASAPQVFAKLTN 163
L IDL+ A+F +P+ +Q + + T Y T LP G ++P +F +
Sbjct: 674 LQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQLA 733
Query: 164 WIANYLRNL--GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
+ N +R + ++ Y+DD+LL + + L+ ++ + L + ++ E++ P
Sbjct: 734 AVLNPMRKMFPTSTIVQYMDDILLASPTNEELQQLSQLTLQALTTHGLPISQEKTQQTPG 793
Query: 222 QTCQYLGIMWNPT----LDSKSLPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIF 272
Q ++LG + +P + ++P++ Q T+ + L +IQW S + +PI
Sbjct: 794 QI-RFLGQVISPNHITYESTPTIPIKSQWTLTELQVILGEIQWVS----KGTPIL 843
>sp|O92815|POL_WDSV Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1
SV=2
Length = 1752
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK-LTNWIANYLRNL 172
IDLS A+F VPI Q + + Y T LP G +P +F++ L + +
Sbjct: 860 IDLSNAFFSVPIHKDSQYLFAFTFEGHQYTWTVLPQGFIHSPTLFSQALYQSLHKIKFKI 919
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ----YLG 228
+ +Y+DD+L+ ++D + L S V+ ++ +Q CQ YLG
Sbjct: 920 SSEICIYMDDVLIASKDRDTNLKDTAVMLQHLASEGHKVSKKK-----LQLCQQEVVYLG 974
Query: 229 IMWNP 233
+ P
Sbjct: 975 QLLTP 979
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1059
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 143/361 (39%), Gaps = 69/361 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L + + IDL++ + + + + + Y +PFGL +AP F + N
Sbjct: 291 LGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNN 350
Query: 165 IANYLRNLGMRVIVYLDDLLLGNQD------------SVLLRSQARAAVATLQSLRWSVN 212
I L L +VYLDD+++ + + L + + + + L+ N
Sbjct: 351 ILRPL--LNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEAN 408
Query: 213 -----------------LERSVLWPVQTCQ-----YLGIM-----WNPTLDSKSLP---- 241
++ V +P+ T +LG+ + P + P
Sbjct: 409 FLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSC 468
Query: 242 LEKQSTIQRYLLTLTQIQWWSVALHRSSPIF--PQAPQVFV-STDASNSGWGAIVDNHS- 297
L+K++ I L + AL PI P + FV +TDASN GA++ +
Sbjct: 469 LKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGH 528
Query: 298 ----LGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIH--KE 351
+ +DH+ + KE+ A+ A + L + LI SD+Q + ++H KE
Sbjct: 529 PISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPL-RWLHNLKE 587
Query: 352 GGTKSFK-LLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQ 410
G K + +R E F + YI GK N+ AD+LSR K + H E TQ
Sbjct: 588 PGAKLERWRVRLSEYQFKID----------YIKGKENSVADALSRIKIEENHH--SEATQ 635
Query: 411 H 411
H
Sbjct: 636 H 636
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1058
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 145/362 (40%), Gaps = 71/362 (19%)
Query: 105 LQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNW 164
L R ++ IDL++ + + + P + + Y +PFGL +AP F + N
Sbjct: 292 LGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMND 351
Query: 165 IANYLRNLGMRVIVYLDDLL------------LGNQDSVLLRSQARAAVATLQSLRWSVN 212
I L L +VYLDD++ LG L ++ + + + L+
Sbjct: 352 ILRPL--LNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETT 409
Query: 213 LERSVLWP---------VQTCQ-------------YLGIM-----WNPTLDSKSLPLEKQ 245
VL P ++ Q +LG+ + P + P+ K
Sbjct: 410 FLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK- 468
Query: 246 STIQRYLLTLTQIQWWSVALHRSSPIFPQAP---------QVFVSTDASNSGWGAIV--D 294
+++ + T + A + + + P + ++TDAS+ GA++ D
Sbjct: 469 -CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD 527
Query: 295 NHSLGGV---WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKE 351
H L + ++H+ + KE+ A+ A + L + I SD+Q +S++++
Sbjct: 528 GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQP-LSWLYRM 586
Query: 352 GGTKSFKLLR-EVE-ALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVT 409
S KL R V+ + FD + +YI GK N AD+LSR K + L E T
Sbjct: 587 KDPNS-KLTRWRVKLSEFDFDI--------KYIKGKENCVADALSRIKLEETY--LSEQT 635
Query: 410 QH 411
QH
Sbjct: 636 QH 637
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
FL KF + N + L + K DL ++ + I P+ + D +
Sbjct: 1451 FLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKV 1510
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+PFGL +AP +F K + + + +VY+DD+LL
Sbjct: 1511 MPFGLKTAPSLFQKA---MIKIFQPILFSALVYIDDILL 1546
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
FL KF + N + L + K DL ++ + I P+ + D +
Sbjct: 1452 FLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKV 1511
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+PFGL +AP +F K + + + +VY+DD+LL
Sbjct: 1512 MPFGLKTAPSLFQKA---MIKIFQPILFSALVYIDDILL 1547
>sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V
PE=3 SV=1
Length = 666
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 136/342 (39%), Gaps = 73/342 (21%)
Query: 115 DLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGM 174
D ++ V + Q+ + + +PFGL AP +F + N M
Sbjct: 333 DCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCM 392
Query: 175 RVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIM---- 230
VY+DD+++ + + + A + ++ ++ +++ L+ + +LG+
Sbjct: 393 ---VYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFK-EKINFLGLEIDKG 448
Query: 231 ----WNPTLDS-KSLP--LEKQSTIQRYLLTLT----------------------QIQW- 260
N L++ P LE + +QR+L LT + W
Sbjct: 449 THCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWN 508
Query: 261 WSVA-------LHRSSPIFPQ----APQ--VFVSTDASNSGWGAIVDNHSLGGV------ 301
W+ + + ++ FP+ P+ + + TDAS+S WG ++ +L GV
Sbjct: 509 WTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRY 568
Query: 302 ----WSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSY--IHKEGGTK 355
+ ++ +H N KE+ AV+ + + L +++DN+ + I+ +G +K
Sbjct: 569 SSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSK 628
Query: 356 SFKLLREVE--ALFDLAVRHNITLMARYIPGKFNTWADSLSR 395
+L+R + + V H + G N AD L+R
Sbjct: 629 QGRLVRWQNWFSKYQFDVEH--------LEGVKNVLADCLTR 662
>sp|P0C211|POL_HTL1L Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro-pol PE=3 SV=2
Length = 1462
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRD-------TLYCMTCLPFGLASAPQVFAKLTN 163
L IDL A+F +P+ Q + + T Y LP G ++P +F
Sbjct: 676 LQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLA 735
Query: 164 WIANYLRNLGMRVIV--YLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
I +R + ++ Y+DD+LL + L+ + A +A+L S V+ +++ P
Sbjct: 736 SILQPIRQAFPQCVILQYMDDILLASPSPEDLQQLSEATMASLISHGLPVSQDKTQQTP- 794
Query: 222 QTCQYLGIMWNP---TLDS-KSLPLEKQSTIQRYLLTLTQIQWWS 262
T ++LG + +P T D+ ++P+ + + L +IQW S
Sbjct: 795 GTIKFLGQIISPNHITYDAVPTVPIRSRWALPELQALLGEIQWVS 839
>sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3
Length = 1149
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG + +DL+ ++ PI P + ++ YC T LP G ++P +F T +
Sbjct: 244 RGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALF---TADVV 300
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQY 226
+ L+ + V Y+DD+ + + D Q + L + + V+L++S + + ++
Sbjct: 301 DLLKEIP-NVQAYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEI-AQREVEF 358
Query: 227 LGIMWNPTLDSKSLPLEKQSTIQRYLLTLT 256
LG +N T + + L T ++ LL +T
Sbjct: 359 LG--FNITKEGRGL----TDTFKQKLLNIT 382
>sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2
Length = 1143
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
R + +DL+ ++ PI P + ++ YC T LP G ++P +F T +
Sbjct: 244 RQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALF---TADVV 300
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQY 226
+ L+ + V VY+DD+ L + D Q L + V+L++S + +T ++
Sbjct: 301 DLLKEIP-NVQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIG-QKTVEF 358
Query: 227 LGIMWNPTLDSKSLPLEKQSTIQRYLLTLT 256
LG +N T + + L T + LL +T
Sbjct: 359 LG--FNITKEGRGL----TDTFKTKLLNIT 382
>sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines)
PE=1 SV=1
Length = 1675
Score = 41.6 bits (96), Expect = 0.014, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 93 FHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLA 152
F++ + + + +Q+ + K DL + H+ ++ + + + + LY PFG+A
Sbjct: 1257 FNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIA 1316
Query: 153 SAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
+AP F + L+ ++Y+DD+L+ + +
Sbjct: 1317 NAPCAFQRFMQESFGDLK----FALLYIDDILIASNN 1349
Score = 32.7 bits (73), Expect = 5.5, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 278 VFVSTDASNSGWGAIV----------DNHSLGGVWSDH---QEMWHINLKEMFAVRSALE 324
+ + TDAS GWGA++ D + G S + ++ W E+ A+ AL
Sbjct: 1485 IIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALN 1544
Query: 325 RKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPG 384
K + DK I++D + +V I E K K R ++ L D ++ +I G
Sbjct: 1545 -KFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK-TRWIK-LRDNLLKDGYKPTFEHIKG 1601
Query: 385 KFNTWADSLSRQKEL 399
N + LSR+ +
Sbjct: 1602 NKNFLPNFLSREGDF 1616
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 40.8 bits (94), Expect = 0.025, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYCMTCLPFGLASA 154
P L++ + +D+ AY+ +P+ P+ +++ + Y CLP G +
Sbjct: 715 PAGLRKMRQITVLDVGDAYYSIPLDPNFRKYTAFTIPTVNNQGPGIRYQFNCLPQGWKGS 774
Query: 155 PQVFAKLTNWIANYL-RNL-GMRVIVYLDDLLLGNQDS 190
P +F I + RNL + ++ Y+DDL +G+Q++
Sbjct: 775 PTIFQNTAASILEEIKRNLPALTIVQYMDDLWVGSQEN 812
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 40.4 bits (93), Expect = 0.026, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYCMTCLPFGLASA 154
P L++ + ID+ AY+ +P+ P +++ + Y CLP G +
Sbjct: 711 PAGLKKMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGS 770
Query: 155 PQVF----AKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
P +F +K+ I L+ L ++ Y+DDL +G+Q+
Sbjct: 771 PTIFQNTASKILEEIKKELKQL--TIVQYMDDLWVGSQE 807
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSV----VYRDT---LYCMTCLPFGLASA 154
P L++ + +D+ AYF VP+ +++ + + +T Y LP G +
Sbjct: 680 PAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGS 739
Query: 155 PQVFAKLTNWIANYLRNLGMRVIV--YLDDLLLGNQDSVLLRSQARAAVATLQS--LRWS 210
P +F T I R +I+ Y+DDL +G S L Q RA + L+ L+W
Sbjct: 740 PSIFQSSTTKILEPFRAQNPEIIIYQYMDDLYVG---SDLEIGQHRAKIEELREHLLKWG 796
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVY-------RDTLYCMTCLPFGLASA 154
P L + + +D+ AYF +P+ P + + + D Y CLP G +
Sbjct: 282 PGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLS 341
Query: 155 PQVFAKLTNWIANYLRNL--GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL 207
P ++ K I R +++ Y+DDL +G+ S + Q + + L+++
Sbjct: 342 PYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGS---KKQHKELIIELRAI 393
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVY-------RDTLYCMTCLPFGLASA 154
P L + + +D+ AYF +P+ P + + + D Y CLP G +
Sbjct: 282 PGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLS 341
Query: 155 PQVFAKLTNWIANYLRNL--GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL 207
P ++ K I R +++ Y+DDL +G+ S + Q + + L+++
Sbjct: 342 PYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGS---KKQHKELIIELRAI 393
>sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1
Length = 1196
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 269 LDLKDAFFCLRLHPTSQPLFASEWRDPGMGISGQLTWTRLPQGFKNSPTLFDEALHRGLA 328
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + + RA + TL +L + + +++ Q CQ
Sbjct: 329 DFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLKTLGNLGYRASAKKA-----QICQ 383
Query: 226 ----YLGIM 230
YLG +
Sbjct: 384 KQVKYLGYL 392
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 40.0 bits (92), Expect = 0.041, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRD-------TLYCMTCLPFGLASA 154
P ++ + +D+ AY+ +P+ P +++ + T Y CLP G +
Sbjct: 712 PSGFEKMTEITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGS 771
Query: 155 PQVF----AKLTNWIANYLRNLGMRVIVYLDDLLLGNQD 189
P +F A + I L+ L ++ Y+DDL +G+Q+
Sbjct: 772 PTIFQNTAASILEEIKKELKPL--TIVQYMDDLWVGSQE 808
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVY-------RDTLYCMTCLPFGLASA 154
P L + + +D+ AYF +P+ P + + + D Y CLP G +
Sbjct: 282 PGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLS 341
Query: 155 PQVFAKLTNWIANYLRNL--GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSL 207
P ++ K I R +++ Y+DDL +G+ S + Q + + L+++
Sbjct: 342 PYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGS---KKQHKELIIELRAI 393
>sp|P07572|POL_MPMV Pol polyprotein OS=Mason-Pfizer monkey virus GN=pol PE=3 SV=1
Length = 867
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFL-----SVVYRDTL--YCMTCLPFGLASA 154
P + +G + IDL +F +P+ PS Q+ S +++ + + LP G+A++
Sbjct: 107 PVAIPQGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANS 166
Query: 155 PQVFAKLTNWIANYLRNL--GMRVIVYLDDLLLGNQDS 190
P + K + +R+ M +I Y+DD+L+ +D
Sbjct: 167 PTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGKDG 204
>sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3)
GN=pol PE=3 SV=2
Length = 1143
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
RG + +DLS ++ I P + + YC T LP G ++P +F T +
Sbjct: 244 RGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALF---TADVV 300
Query: 167 NYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQY 226
+ L+ + V VY+DD+ + + D Q + L + + V+L++S + ++
Sbjct: 301 DLLKEVP-NVQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEI-AQHEVEF 358
Query: 227 LGIMWNPTLDSKSLPLEKQSTIQRYLLTLT 256
LG +N T + + L T ++ LL +T
Sbjct: 359 LG--FNITKEGRGL----TETFKQKLLNIT 382
>sp|P14078|POL_HTL1C Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3
Length = 1462
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRD-------TLYCMTCLPFGLASAPQVFAKLTN 163
L IDL A+F +P+ Q + + T Y LP G ++P +F
Sbjct: 676 LQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLA 735
Query: 164 WIANYLRNL--GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
I +R ++ Y+DD+LL + L+ + A +A+L S V+ ++ P
Sbjct: 736 HILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEATMASLISHGLPVSENKTQQTP- 794
Query: 222 QTCQYLGIMWNP---TLDS-KSLPLEKQSTIQRYLLTLTQIQWWS 262
T ++LG + +P T D+ +P+ + + L +IQW S
Sbjct: 795 GTIKFLGQIISPNHLTYDAVPKVPIRSRWALPELQALLGEIQWVS 839
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYCMTCLPFGLASA 154
P L++ + +D+ AYF VP+ +++ + T Y LP G +
Sbjct: 685 PAGLKKKKSVSVLDVGGAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGS 744
Query: 155 PQVFAKLTNWIANYLRNLGMRVIV--YLDDLLLGNQDSVLLRSQARAAVATLQS--LRWS 210
P +F I R VI+ Y+DDL +G S L Q R + L++ LRW
Sbjct: 745 PAIFQSSMTKILEPFRKQNPEVIIYQYMDDLYVG---SDLEIGQHREKIEELRAHLLRWG 801
>sp|P03355|POL_MLVMS Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate
Shinnick) GN=gag-pol PE=1 SV=4
Length = 1738
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 808 LDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 867
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + + RA + TL +L + + +++ Q CQ
Sbjct: 868 DFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA-----QICQ 922
Query: 226 ----YLGIM 230
YLG +
Sbjct: 923 KQVKYLGYL 931
>sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia virus (isolate FB29)
GN=pol PE=3 SV=1
Length = 1204
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 274 LDLKDAFFCLRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 333
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + + RA + TL L + + +++ Q CQ
Sbjct: 334 DFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKA-----QICQ 388
Query: 226 ----YLGIM 230
YLG +
Sbjct: 389 KQVKYLGYL 397
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 87 FLSLKKFHLINHFRVPDF------------LQRGDFLVKIDLSQAYFHVPIRPSHQRFLS 134
++ L F +N R PDF L++ + +D+ AYF VP+ +++ +
Sbjct: 653 WIKLVDFRELNK-RTPDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711
Query: 135 V----VYRDT---LYCMTCLPFGLASAPQVF-AKLTNWIANYLR-NLGMRVIVYLDDLLL 185
+ +T Y LP G +P +F +T + + R N M + Y+DDL +
Sbjct: 712 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRRKNPDMVLYQYMDDLYV 771
Query: 186 GNQDSVLLRSQARAAVATLQS--LRWS 210
G S L Q RA + L+ LRW
Sbjct: 772 G---SDLEIGQHRAKIEELREHLLRWG 795
>sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211)
GN=pol PE=3 SV=1
Length = 1204
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 274 LDLKDAFFCLRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 333
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + + RA + TL L + + +++ Q CQ
Sbjct: 334 DFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKA-----QICQ 388
Query: 226 ----YLGIM 230
YLG +
Sbjct: 389 KQVKYLGYL 397
>sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
Length = 1156
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 107 RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIA 166
+G + IDLS ++ PI P + ++ YC T LP G ++P +F T +
Sbjct: 241 KGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLF---TGDVV 297
Query: 167 NYLRNLGMRVIVYLDDLLL 185
+ L+ + V VY+DD+ +
Sbjct: 298 DLLQGIP-NVEVYVDDVYI 315
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRF----LSVVYRDT---LYCMTCLPFGLASA 154
P L++ + +D+ AYF VP+ +++ +S + +T Y LP G +
Sbjct: 684 PAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTISSINNETPGIRYQYNVLPQGWKGS 743
Query: 155 PQVFAKLTNWIANYLR--NLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS--LRWS 210
P +F I R N M + Y+DDL +G S L Q R + L+ LRW
Sbjct: 744 PAIFQSSMTKILEPFRKQNPEMVIYQYMDDLYVG---SDLEIGQHRTKIEKLREHLLRWG 800
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1035
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 81/399 (20%), Positives = 145/399 (36%), Gaps = 96/399 (24%)
Query: 77 DGFQDLGDRAFLSLKKFHLINHFRVPDF------------LQRGDFLVKIDLSQAYFHVP 124
D F + R + +K +N +PD L + F +DL Y +
Sbjct: 230 DAFGNPNKRLVIDFRK---LNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIY 286
Query: 125 IRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRN-LGMRVIVYLDDL 183
+ + S Y LPFGL +A +F + + + LR +G VY+DD+
Sbjct: 287 LAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQR---ALDDVLREQIGKICYVYVDDV 343
Query: 184 LLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLE 243
++ +++ + L V+ E++ + ++ +YLG + + +KS P E
Sbjct: 344 IIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFK-ESVEYLGFIVSKD-GTKSDP-E 400
Query: 244 KQSTIQRY--------------------------------LLTLTQIQWWSVALHRSSPI 271
K IQ Y + + + + SV+ H S I
Sbjct: 401 KVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKI 460
Query: 272 ---------------------------FPQAPQVF-VSTDASNSGWGAIVDNHS-----L 298
+P + F ++TDAS SG GA++ +
Sbjct: 461 PVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI 520
Query: 299 GGVWSDHQEMWHINLKEMFAVRSALERKLPVLQ-DKVVLIQSDNQTVVSYIHKEGGTKSF 357
++ + N +E+ A+ AL + L + + I +D+Q + +
Sbjct: 521 SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKI 580
Query: 358 KLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQ 396
K + + D +HN + Y PGK N AD+LSRQ
Sbjct: 581 KRWK---SYID---QHNAKVF--YKPGKENFVADALSRQ 611
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 38.9 bits (89), Expect = 0.095, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYCMTCLPFGLASA 154
P LQ+ + ID+ AY+ +P+ +++ + Y CLP G +
Sbjct: 706 PAGLQKKKQITVIDIGDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGS 765
Query: 155 PQVFAKLTNWIANYLRNL-----GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRW 209
P +F N AN L + G+ ++ Y+DDL L + +Q V +
Sbjct: 766 PTIF---QNTAANILEEIKRHTPGLEIVQYMDDLWLASDHDETRHNQQVDIVRKML---- 818
Query: 210 SVNLERSVLWPVQTCQ------YLGIMWNP---TLDSKSL-PLEKQSTIQRYLLTLTQIQ 259
LE+ + P + Q ++G +P T++ L PLE + T+ + + +
Sbjct: 819 ---LEKGLETPDKKVQREPPWEWMGYKLHPNKWTINKIELPPLEGEWTVNKIQKVVGVLN 875
Query: 260 WWS 262
W S
Sbjct: 876 WAS 878
>sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3
SV=1
Length = 659
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 76/315 (24%)
Query: 142 YCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL----GNQD------SV 191
Y +PFGL AP +F K + ++ VY+DD+L+ G ++ ++
Sbjct: 349 YQWNVVPFGLKQAPSIFPK--TYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNI 406
Query: 192 LLRSQARAAVAT---LQSLRWSVN-----------------LERSVLWP------VQTCQ 225
L R + + + Q + +N LE +P Q +
Sbjct: 407 LRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQR 466
Query: 226 YLGIM-----WNPTLDSKSLPLE---KQSTIQRYLLTLTQIQWWSVALHRSSPIFPQ--- 274
+LGI+ + P L S PL+ K+ + + T +Q + + ++ FP+
Sbjct: 467 FLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQ---YMAKIKKNLKSFPKLYH 523
Query: 275 ---APQVFVSTDASNSGWGAIV----DNHSL-----GGVWSDHQEMWHINLKEMFAVRSA 322
++ + TDAS WG I+ ++H G + + +H N KE+ AV
Sbjct: 524 PEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRV 583
Query: 323 LERKLPVLQDKVVLIQSDNQTVVSY--IHKEGGTKSFKLLREVEAL--FDLAVRHNITLM 378
+++ L LI++DN+ + I+ +G K +L+R L +D V H
Sbjct: 584 IKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEH----- 638
Query: 379 ARYIPGKFNTWADSL 393
I G N +AD L
Sbjct: 639 ---IAGTKNVFADFL 650
>sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2
Length = 1196
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 269 LDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 328
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DD+LL + + RA + TL +L + + +++ L Q +
Sbjct: 329 DFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLGYRASAKKAQLCQKQ-VK 387
Query: 226 YLGIM 230
YLG +
Sbjct: 388 YLGYL 392
>sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol
PE=3 SV=1
Length = 1204
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + ++D + T LP G ++P +F + L +A
Sbjct: 274 LDLKDAFFCLRLHPTSQSLFAFEWKDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 333
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + + RA + TL L + + +++ Q CQ
Sbjct: 334 DFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKA-----QICQ 388
Query: 226 ----YLGIM 230
YLG +
Sbjct: 389 KQVKYLGYL 397
>sp|Q2F7J0|POL_XMRV4 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42)
GN=gag-pol PE=3 SV=1
Length = 1733
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 806 LDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 865
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + RA + TL +L + + +++ Q CQ
Sbjct: 866 DFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGNLGYRASAKKA-----QICQ 920
Query: 226 ----YLGIM 230
YLG +
Sbjct: 921 KQVKYLGYL 929
>sp|P51517|POL_SRV2 Pol polyprotein OS=Simian retrovirus SRV-2 GN=pol PE=3 SV=1
Length = 867
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYCMTCLPFGLASA 154
P + +G F + IDL +F +P++P Q+ + T Y LP G+A++
Sbjct: 107 PVAIPQGYFKIVIDLKDCFFTIPLQPVDQKRFAFSLPSTNFKQPMKRYQWKVLPQGMANS 166
Query: 155 PQVFAKLTNWIANYLRN--LGMRVIVYLDDLLLGNQ 188
P + K +R M +I Y+DD+L+ +
Sbjct: 167 PTLCQKYVAAAIEPVRKSWAQMYIIHYMDDILIAGK 202
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 102 PDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSV----VYRDT---LYCMTCLPFGLASA 154
P L++ + +D+ AYF VP+ +++ + + +T Y LP G +
Sbjct: 684 PAGLKKKKSVSVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGS 743
Query: 155 PQVF-AKLTNWIANYL-RNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS--LRWS 210
P +F + +T +A + +N M + Y+DDL +G S L Q RA + L++ L+W
Sbjct: 744 PAIFQSSMTKILAPFREQNPEMVIYQYMDDLYVG---SDLEIGQHRAKIEELRAHLLKWG 800
>sp|A1Z651|POL_XMRV6 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 114 IDLSQAYFHVPIRPSHQRFLSVVYRDTLYCM------TCLPFGLASAPQVFAK-LTNWIA 166
+DL A+F + + P+ Q + +RD + T LP G ++P +F + L +A
Sbjct: 806 LDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLA 865
Query: 167 NY-LRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQ 225
++ +++ + ++ Y+DDLLL + RA + TL +L + + +++ Q CQ
Sbjct: 866 DFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGNLGYRASAKKA-----QICQ 920
Query: 226 ----YLGIM 230
YLG +
Sbjct: 921 KQVKYLGYL 929
>sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain
Japan ATK-1 subtype A) GN=gag-pro-pol PE=1 SV=3
Length = 1462
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 111 LVKIDLSQAYFHVPIRPSHQRFLSVVYRD-------TLYCMTCLPFGLASAPQVFAKLTN 163
L IDL A+F +P+ Q + + T Y LP G ++P +F
Sbjct: 676 LQTIDLRDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLA 735
Query: 164 WIANYLRNL--GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPV 221
I +R ++ Y+DD+LL + L + A +A+L S V+ ++ P
Sbjct: 736 HILQPIRQAFPQCTILQYMDDILLASPSHEDLLLLSEATMASLISHGLPVSENKTQQTP- 794
Query: 222 QTCQYLGIMWNP---TLDS-KSLPLEKQSTIQRYLLTLTQIQWWS 262
T ++LG + +P T D+ ++P+ + + L +IQW S
Sbjct: 795 GTIKFLGQIISPNHLTYDAVPTVPIRSRWALPELQALLGEIQWVS 839
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,611,544
Number of Sequences: 539616
Number of extensions: 6957017
Number of successful extensions: 18969
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 18879
Number of HSP's gapped (non-prelim): 152
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)