Your job contains 1 sequence.
>psy4044
MGHPVFRQILKAISLKRAIGLLEKREIWDVSTLISWISDHPPNQDSFFEVARHTAILLLL
CSGRRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAY
FHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYL
DDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSL
PLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDNHSLGG
VWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLL
REVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWHLLPEVTQHIFAQWGVPE
IDLFATANSAAFLVQGGPLKFPDGINPISTSYDPHGENQP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4044
(460 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0267304 - symbol:DDB_G0267304_RTE "DIRS1 O... 212 1.2e-24 2
DICTYBASE|DDB_G0291223 - symbol:DDB_G0291223_RTE "DIRS1 O... 232 8.4e-19 1
DICTYBASE|DDB_G0267338 - symbol:DDB_G0267338_RTE "DIRS1 O... 229 1.8e-18 1
DICTYBASE|DDB_G0267210 - symbol:DDB_G0267210_RTE "DIRS1 O... 221 9.0e-15 1
DICTYBASE|DDB_G0267240 - symbol:DDB_G0267240_RTE "DIRS1 O... 212 6.9e-14 1
DICTYBASE|DDB_G0267326 - symbol:DDB_G0267326_RTE "DIRS1 O... 204 5.3e-13 1
DICTYBASE|DDB_G0294180 - symbol:DDB_G0294180_RTE "DIRS1 O... 197 1.6e-12 1
DICTYBASE|DDB_G0267342 - symbol:DDB_G0267342_RTE "DIRS1 O... 198 2.9e-12 1
DICTYBASE|DDB_G0294346 - symbol:DDB_G0294346_RTE "DIRS1 O... 176 3.3e-10 1
DICTYBASE|DDB_G0267314 - symbol:DDB_G0267314_RTE "DIRS1 O... 149 1.1e-07 1
SGD|S000003537 - symbol:YIL082W-A "Retrotransposon TYA Ga... 114 7.6e-05 2
SGD|S000007347 - symbol:YGR109W-B "Retrotransposon TYA Ga... 114 8.1e-05 2
DICTYBASE|DDB_G0294338 - symbol:DDB_G0294338_RTE "DGLT-A"... 97 0.00011 2
DICTYBASE|DDB_G0267366 - symbol:DDB_G0267366_RTE "Skipper... 98 0.00017 2
ASPGD|ASPL0000076487 - symbol:AN5065 species:162425 "Emer... 97 0.00038 1
DICTYBASE|DDB_G0281535 - symbol:DDB_G0281535 "Skipper GAG... 98 0.00056 2
DICTYBASE|DDB_G0267356 - symbol:DDB_G0267356_RTE "Skipper... 98 0.00056 2
DICTYBASE|DDB_G0270954 - symbol:DDB_G0270954 "Skipper GAG... 97 0.00072 2
DICTYBASE|DDB_G0267362 - symbol:DDB_G0267362_RTE "Skipper... 97 0.00073 2
>DICTYBASE|DDB_G0267304 [details] [associations]
symbol:DDB_G0267304_RTE "DIRS1 ORF3 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR002104 InterPro:IPR002156
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00075 Pfam:PF00078
Pfam:PF00589 PROSITE:PS50878 dictyBase:DDB_G0267304 GO:GO:0003677
GO:GO:0003723 GO:GO:0006310 GO:GO:0003964 GO:GO:0006278
GO:GO:0004523 GO:GO:0015074 Gene3D:1.10.443.10 SUPFAM:SSF56349
InterPro:IPR010998 SUPFAM:SSF47823 Gene3D:1.10.150.130
InterPro:IPR023109 EMBL:AAFI02000001 RefSeq:XP_647713.1
ProteinModelPortal:Q55H05 EnsemblProtists:DDB0216498 GeneID:8615835
KEGG:ddi:DDB_G0267304 OMA:PIRRESP Uniprot:Q55H05
Length = 833
Score = 212 (79.7 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 46/149 (30%), Positives = 85/149 (57%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY +V + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLYVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+SVL
Sbjct: 67 LLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEL 126
Query: 221 VQTCQYLGIMWNPTLDSKSL-PLEKQSTI 248
Q+ +LG+ ++ K L P EK+ ++
Sbjct: 127 TQSITFLGLQIG-SISMKLLVPKEKKKSV 154
Score = 149 (57.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 49/165 (29%), Positives = 80/165 (48%)
Query: 240 LPLEKQSTIQRYLLTLTQIQWWSVALHRSSPIFPQAPQVFVSTDASNSGWGAIVDN---- 295
+P + +S I +L L Q W+ + +FP V ++TDAS SG GA +
Sbjct: 214 IPQDVKSEISHWLTVLNQ---WN---GKEISLFPSYDYV-LTTDASESGAGATLKKGNKV 266
Query: 296 -HSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGT 354
+ WS Q N +EM A+ A + L + + IQ+DN T +SYI+++GG
Sbjct: 267 IKTWSFQWSTTQSNMSSNRREMLALLMAYQALCQKLNNCKLKIQTDNTTTLSYINRQGGQ 326
Query: 355 -KSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKE 398
+ +L E L+ ++ + L+ +IPG FN A S ++E
Sbjct: 327 IQDLSVL--FEQLWKQCLKKKVNLIGEHIPGFFNVKAPQPSFREE 369
>DICTYBASE|DDB_G0291223 [details] [associations]
symbol:DDB_G0291223_RTE "DIRS1 ORF2/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
PROSITE:PS50878 dictyBase:DDB_G0291223 GO:GO:0003723 GO:GO:0003964
GO:GO:0006278 eggNOG:COG2801 EMBL:AAFI02000176 RefSeq:XP_635338.1
ProteinModelPortal:Q54EZ5 EnsemblProtists:DDB0219661 GeneID:8628043
KEGG:ddi:DDB_G0291223 InParanoid:Q54EZ5 OMA:WINSPSA Uniprot:Q54EZ5
Length = 300
Score = 232 (86.7 bits), Expect = 8.4e-19, P = 8.4e-19
Identities = 48/160 (30%), Positives = 90/160 (56%)
Query: 86 AFLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMT 145
++++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 135 SYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWK 194
Query: 146 CLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQ 205
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + A+ L
Sbjct: 195 TMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKAMDLLV 254
Query: 206 SLRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQ 245
L + +NLE+SVL P Q+ +LG+ + +P EK+
Sbjct: 255 KLGFKLNLEKSVLEPTQSITFLGLQIDSVSMKLLVPKEKK 294
>DICTYBASE|DDB_G0267338 [details] [associations]
symbol:DDB_G0267338_RTE "DIRS1 ORF3" species:44689
"Dictyostelium discoideum" [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000477 Pfam:PF00078 PROSITE:PS50878
dictyBase:DDB_G0267338 GO:GO:0003723 GO:GO:0003964 GO:GO:0006278
eggNOG:COG2801 EMBL:AAFI02000001 RefSeq:XP_647698.1
ProteinModelPortal:Q55GY9 EnsemblProtists:DDB0202373 GeneID:8615850
KEGG:ddi:DDB_G0267338 OMA:CHTEALM Uniprot:Q55GY9
Length = 161
Score = 229 (85.7 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 49/152 (32%), Positives = 87/152 (57%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+ VL P
Sbjct: 67 LLRHVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKIVLEP 126
Query: 221 VQTCQYLGIMWNPTLDSKSL----PLEKQSTI 248
Q+ +LG+ +DSKS+ P EK+ ++
Sbjct: 127 TQSITFLGLQ----IDSKSMKLLVPKEKKKSV 154
>DICTYBASE|DDB_G0267210 [details] [associations]
symbol:DDB_G0267210_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267210 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 ProtClustDB:CLSZ2431571 RefSeq:XP_647766.1
ProteinModelPortal:Q55H48 EnsemblProtists:DDB0216453 GeneID:8615792
KEGG:ddi:DDB_G0267210 Uniprot:Q55H48
Length = 968
Score = 221 (82.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 46/162 (28%), Positives = 87/162 (53%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 150 YINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKA 209
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + + L
Sbjct: 210 MPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVK 269
Query: 207 LRWSVNLERSVLWPVQTCQYLGIMWNPTLDSKSLPLEKQSTI 248
L + +NLE+ VL P Q +LG+ + +P EK+ +
Sbjct: 270 LGFKLNLEKIVLEPTQLITFLGLQIDSVSMKLLVPKEKKKGV 311
>DICTYBASE|DDB_G0267240 [details] [associations]
symbol:DDB_G0267240_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267240 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 ProtClustDB:CLSZ2431571 RefSeq:XP_647781.1
ProteinModelPortal:Q55H37 EnsemblProtists:DDB0216468 GeneID:8615807
KEGG:ddi:DDB_G0267240 Uniprot:Q55H37
Length = 818
Score = 212 (79.7 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 42/127 (33%), Positives = 74/127 (58%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+SVL P
Sbjct: 67 LLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEP 126
Query: 221 VQTCQYL 227
Q+ +L
Sbjct: 127 TQSITFL 133
>DICTYBASE|DDB_G0267326 [details] [associations]
symbol:DDB_G0267326_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267326 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 ProtClustDB:CLSZ2431571 RefSeq:XP_647724.1
ProteinModelPortal:Q55GZ4 EnsemblProtists:DDB0216509 GeneID:8615846
KEGG:ddi:DDB_G0267326 Uniprot:Q55GZ4
Length = 818
Score = 204 (76.9 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 42/127 (33%), Positives = 72/127 (56%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++AP++F
Sbjct: 7 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTM 66
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L LR++ + VI YLDDLL+ S + + L L + +NLE+SVL P
Sbjct: 67 LLRPALRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMNLLVKLGFKLNLEKSVLEP 126
Query: 221 VQTCQYL 227
Q+ L
Sbjct: 127 TQSITLL 133
>DICTYBASE|DDB_G0294180 [details] [associations]
symbol:DDB_G0294180_RTE "DIRS1 ORF1/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
PROSITE:PS50878 dictyBase:DDB_G0294180 GO:GO:0003723 GO:GO:0003964
GO:GO:0006278 ProtClustDB:CLSZ2846537 EMBL:AAFI02000230
RefSeq:XP_628809.1 EnsemblProtists:DDB0215083 GeneID:3385473
KEGG:ddi:DDB_G0294180 InParanoid:Q54AV5 Uniprot:Q54AV5
Length = 558
Score = 197 (74.4 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 40/132 (30%), Positives = 75/132 (56%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 427 YINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKT 486
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQS 206
+PFGL++AP++F L + LR++ + VI YLDDLL+ S + + L
Sbjct: 487 MPFGLSTAPRIFTMLLRPVLRMLRDIKVSVIAYLDDLLIVGSTKEECLSNFKKTMELLVK 546
Query: 207 LRWSVNLERSVL 218
L + +NLE+SVL
Sbjct: 547 LGFKLNLEKSVL 558
>DICTYBASE|DDB_G0267342 [details] [associations]
symbol:DDB_G0267342_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267342 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 RefSeq:XP_647701.1 ProteinModelPortal:Q55GY6
EnsemblProtists:DDB0216513 GeneID:8615853 KEGG:ddi:DDB_G0267342
ProtClustDB:CLSZ2431571 Uniprot:Q55GY6
Length = 925
Score = 198 (74.8 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 41/127 (32%), Positives = 72/127 (56%)
Query: 101 VPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAK 160
+P +++G ++VK+D+ +AY HV + P ++ V++ + Y +PFGL++A ++F
Sbjct: 114 LPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAHRIFTM 173
Query: 161 LTNWIANYLRNLGMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWP 220
L + LR++ + VI YLDDLL+ S + + L L + +NLE+SVL P
Sbjct: 174 LLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLIKLGFKLNLEKSVLEP 233
Query: 221 VQTCQYL 227
Q+ L
Sbjct: 234 TQSITLL 240
>DICTYBASE|DDB_G0294346 [details] [associations]
symbol:DDB_G0294346_RTE "DIRS1 ORF1/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
PROSITE:PS50878 dictyBase:DDB_G0294346 GO:GO:0003723 GO:GO:0003964
GO:GO:0006278 EMBL:AAFI02000253 RefSeq:XP_628722.1
EnsemblProtists:DDB0220064 GeneID:3385386 KEGG:ddi:DDB_G0294346
InParanoid:Q54AM3 ProtClustDB:CLSZ2846537 Uniprot:Q54AM3
Length = 541
Score = 176 (67.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 31/99 (31%), Positives = 61/99 (61%)
Query: 87 FLSLKKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
+++ + F + +P +++G ++VK+D+ +AY HV + P ++ V++ + Y
Sbjct: 407 YINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKT 466
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
+PFGL++AP++F L + LR++ + VI YLDDLL+
Sbjct: 467 MPFGLSTAPRIFTMLLRHVLRMLRDINVSVIAYLDDLLI 505
>DICTYBASE|DDB_G0267314 [details] [associations]
symbol:DDB_G0267314_RTE "DIRS1 ORF2/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
dictyBase:DDB_G0267314 GO:GO:0003723 GO:GO:0003964 GO:GO:0006278
EMBL:AAFI02000001 RefSeq:XP_647718.1 ProteinModelPortal:Q55H00
EnsemblProtists:DDB0216503 GeneID:8615840 KEGG:ddi:DDB_G0267314
ProtClustDB:CLSZ2429590 Uniprot:Q55H00
Length = 316
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K ++ HV + P ++ +++ + Y + FGL++AP++F L + LR++
Sbjct: 200 KTRYQESLLHVLVDPQYRDLFRFLWKGSHYRWKTMSFGLSTAPRIFTMLLRPVLRMLRDI 259
Query: 173 GMRVIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLERSVLWPVQTCQYL 227
+ VI YLDDLL+ S + + L L + +NLE+SVL P Q+ + L
Sbjct: 260 KVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEPTQSIKNL 314
>SGD|S000003537 [details] [associations]
symbol:YIL082W-A "Retrotransposon TYA Gag and TYB Pol genes"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA;ISS] [GO:0032197 "transposition,
RNA-mediated" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0015074 "DNA integration" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046797 "viral
procapsid maturation" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000943
"retrotransposon nucleocapsid" evidence=ISS] [GO:0008233 "peptidase
activity" evidence=IEA;ISS] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000477
InterPro:IPR001584 InterPro:IPR001878 InterPro:IPR012337
Pfam:PF00078 Pfam:PF00665 PROSITE:PS50158 PROSITE:PS50878
PROSITE:PS50994 SMART:SM00343 SGD:S000003537 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 EMBL:BK006942
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008233 GO:GO:0003964 GO:GO:0006278
EMBL:Z46728 EMBL:Z37997 GO:GO:0004540 GO:GO:0004190
InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523 GO:GO:0015074
GO:GO:0003887 GO:GO:0032197 KO:K07497 InterPro:IPR005162
Pfam:PF03732 GO:GO:0046797 OrthoDB:EOG44N213 GO:GO:0000943
HOGENOM:HOG000172599 InterPro:IPR024650 Pfam:PF12384 EMBL:M23367
PIR:S53577 RefSeq:NP_012184.1 ProteinModelPortal:Q7LHG5 SMR:Q7LHG5
IntAct:Q7LHG5 MINT:MINT-541560 STRING:Q7LHG5 GeneID:854728
KEGG:sce:YIL082W-A NextBio:977418 Genevestigator:Q7LHG5
Uniprot:Q7LHG5
Length = 1498
Score = 114 (45.2 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 38/122 (31%), Positives = 63/122 (51%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHF---RVPDFLQR-GD--FLVKIDLSQAYFHV 123
+L+ +DG F+ D + +L K + + F R+ + L R G+ +DL Y +
Sbjct: 663 VLVPKKDGTFRLCVD--YRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 720
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
P+ P + + V Y T +PFGL +AP FA+ ++A+ R+L V VYLDD+
Sbjct: 721 PMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFRDLRF-VNVYLDDI 776
Query: 184 LL 185
L+
Sbjct: 777 LI 778
Score = 68 (29.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 280 VSTDASNSGWGAI---VDNHS--LG--GVWSDHQEMWHINLK----EMFAVRSALERKLP 328
++TDAS G GA+ VDN + +G G +S E N E+ + AL
Sbjct: 916 LTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRY 975
Query: 329 VLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNT 388
+L K +++D+ +++S +K + R V+ D ++ TL Y+ G N
Sbjct: 976 MLHGKHFTLRTDHISLLSLQNKN------EPARRVQRWLDDLATYDFTL--EYLAGPKNV 1027
Query: 389 WADSLSR 395
AD++SR
Sbjct: 1028 VADAISR 1034
>SGD|S000007347 [details] [associations]
symbol:YGR109W-B "Retrotransposon TYA Gag and TYB Pol genes"
species:4932 "Saccharomyces cerevisiae" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0015074 "DNA integration" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004190 "aspartic-type endopeptidase
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008233 "peptidase activity" evidence=IEA;ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046797 "viral procapsid maturation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0032197
"transposition, RNA-mediated" evidence=ISS] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0000943 "retrotransposon
nucleocapsid" evidence=ISS] InterPro:IPR000477 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR012337 Pfam:PF00078 Pfam:PF00665
PROSITE:PS50158 PROSITE:PS50878 PROSITE:PS50994 SMART:SM00343
SGD:S000007347 GO:GO:0005524 GO:GO:0005737 EMBL:BK006941
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008233
GO:GO:0003964 GO:GO:0006278 GO:GO:0004540 GO:GO:0004190
InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523 GO:GO:0015074
EMBL:Z72894 GO:GO:0003887 EMBL:Z72895 GO:GO:0032197 eggNOG:COG2801
KO:K07497 InterPro:IPR005162 Pfam:PF03732 GO:GO:0046797
OrthoDB:EOG44N213 GO:GO:0000943 EMBL:M34549 EMBL:M18353 PIR:S22875
PIR:S69842 RefSeq:NP_011624.1 ProteinModelPortal:Q99315 SMR:Q99315
STRING:Q99315 MEROPS:A02.022 GeneID:853006 KEGG:sce:YGR109W-B
HOGENOM:HOG000172599 NextBio:972857 PMAP-CutDB:Q99315
Genevestigator:Q99315 InterPro:IPR024650 Pfam:PF12384
Uniprot:Q99315
Length = 1547
Score = 114 (45.2 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 38/122 (31%), Positives = 63/122 (51%)
Query: 71 LLLSSRDG-FQDLGDRAFLSLKKFHLINHF---RVPDFLQR-GD--FLVKIDLSQAYFHV 123
+L+ +DG F+ D + +L K + + F R+ + L R G+ +DL Y +
Sbjct: 637 VLVPKKDGTFRLCVD--YRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 694
Query: 124 PIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDL 183
P+ P + + V Y T +PFGL +AP FA+ ++A+ R+L V VYLDD+
Sbjct: 695 PMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFRDLRF-VNVYLDDI 750
Query: 184 LL 185
L+
Sbjct: 751 LI 752
Score = 68 (29.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 280 VSTDASNSGWGAI---VDNHS--LG--GVWSDHQEMWHINLK----EMFAVRSALERKLP 328
++TDAS G GA+ VDN + +G G +S E N E+ + AL
Sbjct: 890 LTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRY 949
Query: 329 VLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNT 388
+L K +++D+ +++S +K + R V+ D ++ TL Y+ G N
Sbjct: 950 MLHGKHFTLRTDHISLLSLQNKN------EPARRVQRWLDDLATYDFTL--EYLAGPKNV 1001
Query: 389 WADSLSR 395
AD++SR
Sbjct: 1002 VADAISR 1008
>DICTYBASE|DDB_G0294338 [details] [associations]
symbol:DDB_G0294338_RTE "DGLT-A" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR001878
Pfam:PF00078 Pfam:PF00098 PROSITE:PS50158 PROSITE:PS50878
SMART:SM00343 dictyBase:DDB_G0294338 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0003964 GO:GO:0006278 Gene3D:4.10.60.10
InterPro:IPR005162 Pfam:PF03732 EMBL:AAFI02000250
RefSeq:XP_628729.1 ProteinModelPortal:Q54AM7
EnsemblProtists:DDB0215166 GeneID:3385393 KEGG:ddi:DDB_G0294338
InParanoid:Q54AM7 Uniprot:Q54AM7
Length = 693
Score = 97 (39.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 280 VSTDASNSGWGA-IVDNHSLGGVWS----DHQEMWHINLKEMFAVRSALERKLPVLQDKV 334
+ TDAS+ G GA + +H + +S D ++ + + KE +V ALE ++ +
Sbjct: 535 LETDASDIGVGATLCQDHGIISFYSRTIRDTEKNYSASEKECLSVVCALEEFHYIIGTQE 594
Query: 335 VLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTWADSLS 394
L+ +DN + VS++ + G K R + LA +NIT +Y GK NT+AD+LS
Sbjct: 595 TLVVTDN-SAVSFLRNDLGKIRNK--RFINWNVKLA-SYNITF--KYRSGKENTFADALS 648
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K+D+ Y+ + IR + + L+ +PFGL +AP VF + + I L
Sbjct: 375 KLDMISGYYQIRIREGDKYLTAFSVPQGLFEFNVMPFGLCNAPAVFQRTIHKIFKEENRL 434
Query: 173 GMRVIVYLDDLLLGNQDSVL 192
++ + DD+L + SV+
Sbjct: 435 TLQS--FYDDIL-SHSKSVM 451
>DICTYBASE|DDB_G0267366 [details] [associations]
symbol:DDB_G0267366_RTE "Skipper GAG-PRO-POL"
species:44689 "Dictyostelium discoideum" [GO:0006508 "proteolysis"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0004190 "aspartic-type endopeptidase activity"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR001969 Pfam:PF00078 PROSITE:PS00141
PROSITE:PS50878 dictyBase:DDB_G0267366 GO:GO:0006508
EMBL:AAFI02000003 GO:GO:0003723 GO:GO:0003964 GO:GO:0006278
GO:GO:0004190 InterPro:IPR021109 SUPFAM:SSF50630 eggNOG:COG2801
ProtClustDB:CLSZ2431409 RefSeq:XP_647685.1
ProteinModelPortal:Q55GX4 EnsemblProtists:DDB0216525 GeneID:8615865
KEGG:ddi:DDB_G0267366 Uniprot:Q55GX4
Length = 779
Score = 98 (39.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFL--QRGD--FLVKIDLSQAYFHVPIR 126
+LL RD ++ + D L+ + F D L Q D K D+ YF V I
Sbjct: 351 MLLKKRDSWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLIN 410
Query: 127 PSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
P H ++ + + + T +P GL ++P FA+L I +++L + Y DDLL+
Sbjct: 411 PEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSL----LQYFDDLLV 465
Score = 75 (31.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 303 SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
+D Q+ + I +E ++ +L++ +L K V I +D+Q + +YI + K F ++
Sbjct: 666 TDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNL-TYIINKSNDKPFTKRQD 724
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWH--LLPEVTQH-IFAQW 416
+ + + R+I GK N AD LSR+ + W L ++ + I +QW
Sbjct: 725 NYMKYIKEFDYEL----RHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQW 777
>ASPGD|ASPL0000076487 [details] [associations]
symbol:AN5065 species:162425 "Emericella nidulans"
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000477 Pfam:PF00078
GO:GO:0003723 GO:GO:0003964 GO:GO:0006278 EMBL:BN001303
eggNOG:COG2801 EMBL:AACD01000086 OrthoDB:EOG4RV622
RefSeq:XP_662669.1 ProteinModelPortal:Q5B315
EnsemblFungi:CADANIAT00005321 GeneID:2872864 KEGG:ani:AN5065.2
HOGENOM:HOG000137584 OMA:TIQDFAS Uniprot:Q5B315
Length = 109
Score = 97 (39.2 bits), Expect = 0.00038, P = 0.00038
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 103 DFLQRGDF-LVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKL 161
+ LQ+G K+D+S A+ + I + + R L+ PFGLA+AP F K
Sbjct: 15 ELLQKGFICFTKLDVSAAFHKIRIAKDQEWMTAFRTRYGLFEWLVTPFGLANAPSTFQKY 74
Query: 162 TNW-IANYLRNLGMRVIVYLDDLLL-GNQD 189
NW + YL Y+D++L+ N+D
Sbjct: 75 INWTLREYLDEF---CSAYIDNVLVYTNRD 101
>DICTYBASE|DDB_G0281535 [details] [associations]
symbol:DDB_G0281535 "Skipper GAG-PRO-POL"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0003964 "RNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR000953 InterPro:IPR001584
InterPro:IPR001969 InterPro:IPR012337 Pfam:PF00078 Pfam:PF00665
PROSITE:PS00141 PROSITE:PS50013 PROSITE:PS50878 PROSITE:PS50994
SMART:SM00298 dictyBase:DDB_G0281535 Pfam:PF00385 GO:GO:0005634
GO:GO:0006508 GO:GO:0003723 EMBL:AAFI02000041 SUPFAM:SSF53098
GO:GO:0003964 GO:GO:0006278 GO:GO:0004190 InterPro:IPR021109
SUPFAM:SSF50630 InterPro:IPR016197 SUPFAM:SSF54160 GO:GO:0015074
InterPro:IPR023780 ProtClustDB:CLSZ2431409 RefSeq:XP_640704.2
ProteinModelPortal:Q54TV7 EnsemblProtists:DDB0218314 GeneID:8623091
KEGG:ddi:DDB_G0281535 InParanoid:Q54TV7 OMA:NHISASE Uniprot:Q54TV7
Length = 1322
Score = 98 (39.6 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFL--QRGD--FLVKIDLSQAYFHVPIR 126
+LL RD ++ + D L+ + F D L Q D K D+ YF V I
Sbjct: 351 MLLKKRDSWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLIN 410
Query: 127 PSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
P H ++ + + + T +P GL ++P FA+L I +++L + Y DDLL+
Sbjct: 411 PEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSL----LQYFDDLLV 465
Score = 75 (31.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 303 SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
+D Q+ + I +E ++ +L++ +L K V I +D+Q + +YI + K F ++
Sbjct: 666 TDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNL-TYIINKSNDKPFTKRQD 724
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWH--LLPEVTQH-IFAQW 416
+ + + R+I GK N AD LSR+ + W L ++ + I +QW
Sbjct: 725 NYMKYIKEFDYEL----RHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQW 777
>DICTYBASE|DDB_G0267356 [details] [associations]
symbol:DDB_G0267356_RTE "Skipper GAG-PRO-POL"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0003964 "RNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR000953 InterPro:IPR001584
InterPro:IPR001969 InterPro:IPR012337 Pfam:PF00078 Pfam:PF00665
PROSITE:PS00141 PROSITE:PS50013 PROSITE:PS50878 PROSITE:PS50994
SMART:SM00298 dictyBase:DDB_G0267356 Pfam:PF00385 GO:GO:0005634
GO:GO:0006508 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 GO:GO:0004190 InterPro:IPR021109 SUPFAM:SSF50630
InterPro:IPR016197 SUPFAM:SSF54160 GO:GO:0015074 InterPro:IPR023780
OMA:NTWARIC ProtClustDB:CLSZ2431409 EMBL:AAFI02000001
RefSeq:XP_647691.1 ProteinModelPortal:Q55GX9
EnsemblProtists:DDB0216520 GeneID:8615860 KEGG:ddi:DDB_G0267356
Uniprot:Q55GX9
Length = 1322
Score = 98 (39.6 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 71 LLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFL--QRGD--FLVKIDLSQAYFHVPIR 126
+LL RD ++ + D L+ + F D L Q D K D+ YF V I
Sbjct: 351 MLLKKRDSWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLIN 410
Query: 127 PSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNLGMRVIVYLDDLLL 185
P H ++ + + + T +P GL ++P FA+L I +++L + Y DDLL+
Sbjct: 411 PEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSL----LQYFDDLLV 465
Score = 75 (31.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 303 SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
+D Q+ + I +E ++ +L++ +L K V I +D+Q + +YI + K F ++
Sbjct: 666 TDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNL-TYIINKSNDKPFTKRQD 724
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWH--LLPEVTQH-IFAQW 416
+ + + R+I GK N AD LSR+ + W L ++ + I +QW
Sbjct: 725 NYMKYIKEFDYEL----RHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQW 777
>DICTYBASE|DDB_G0270954 [details] [associations]
symbol:DDB_G0270954 "Skipper GAG-PRO-POL"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0003964 "RNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR000953 InterPro:IPR001584
InterPro:IPR001969 InterPro:IPR012337 Pfam:PF00078 Pfam:PF00665
PROSITE:PS00141 PROSITE:PS50013 PROSITE:PS50878 PROSITE:PS50994
SMART:SM00298 dictyBase:DDB_G0270954 Pfam:PF00385 GO:GO:0005634
EMBL:AAFI02000005 GO:GO:0006508 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0003964 GO:GO:0006278 GO:GO:0004190 InterPro:IPR021109
SUPFAM:SSF50630 InterPro:IPR016197 SUPFAM:SSF54160 GO:GO:0015074
InterPro:IPR023780 ProtClustDB:CLSZ2431409 RefSeq:XP_646285.1
ProteinModelPortal:Q55D46 EnsemblProtists:DDB0216704 GeneID:8617240
KEGG:ddi:DDB_G0270954 InParanoid:Q55D46 OMA:ASPDHIK Uniprot:Q55D46
Length = 1322
Score = 97 (39.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K D+ YF V I P H ++ + + + T +P GL ++P FA+L I +++L
Sbjct: 397 KFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSL 456
Query: 173 GMRVIVYLDDLLL 185
+ Y DDLL+
Sbjct: 457 ----LQYFDDLLV 465
Score = 75 (31.5 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 303 SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
+D Q+ + I +E ++ +L++ +L K V I +D+Q + +YI + K F ++
Sbjct: 666 TDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNL-TYIINKSNDKPFTKRQD 724
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWH--LLPEVTQH-IFAQW 416
+ + + R+I GK N AD LSR+ + W L ++ + I +QW
Sbjct: 725 NYMKYIKEFDYEL----RHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQW 777
>DICTYBASE|DDB_G0267362 [details] [associations]
symbol:DDB_G0267362_RTE "Skipper GAG-PRO-POL"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004190 "aspartic-type
endopeptidase activity" evidence=IEA] [GO:0003964 "RNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR000953 InterPro:IPR001584
InterPro:IPR001969 InterPro:IPR012337 Pfam:PF00078 Pfam:PF00665
PROSITE:PS00141 PROSITE:PS50013 PROSITE:PS50878 PROSITE:PS50994
SMART:SM00298 dictyBase:DDB_G0267362 Pfam:PF00385 GO:GO:0005634
GO:GO:0006508 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 GO:GO:0004190 InterPro:IPR021109 SUPFAM:SSF50630
InterPro:IPR016197 SUPFAM:SSF54160 GO:GO:0015074 InterPro:IPR023780
ProtClustDB:CLSZ2431409 EMBL:AAFI02000001 RefSeq:XP_647694.1
ProteinModelPortal:Q55GX6 PRIDE:Q55GX6 EnsemblProtists:DDB0216523
GeneID:8615863 KEGG:ddi:DDB_G0267362 OMA:TINEANQ Uniprot:Q55GX6
Length = 1335
Score = 97 (39.2 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 113 KIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTCLPFGLASAPQVFAKLTNWIANYLRNL 172
K D+ YF V I P H ++ + + + T +P GL ++P FA+L I +++L
Sbjct: 409 KFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSL 468
Query: 173 GMRVIVYLDDLLL 185
+ Y DDLL+
Sbjct: 469 ----LQYFDDLLV 477
Score = 75 (31.5 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 303 SDHQEMWHINLKEMFAVRSALERKLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLRE 362
+D Q+ + I +E ++ +L++ +L K V I +D+Q + +YI + K F ++
Sbjct: 678 TDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNL-TYIINKSNDKPFTKRQD 736
Query: 363 VEALFDLAVRHNITLMARYIPGKFNTWADSLSRQKELPDWH--LLPEVTQH-IFAQW 416
+ + + R+I GK N AD LSR+ + W L ++ + I +QW
Sbjct: 737 NYMKYIKEFDYEL----RHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQW 789
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.137 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 460 460 0.00095 118 3 11 22 0.48 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 630 (67 KB)
Total size of DFA: 308 KB (2156 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 39.40u 0.11s 39.51t Elapsed: 00:00:05
Total cpu time: 39.40u 0.11s 39.51t Elapsed: 00:00:06
Start: Thu Aug 15 15:07:11 2013 End: Thu Aug 15 15:07:17 2013