RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4044
(460 letters)
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 54.6 bits (131), Expect = 3e-09
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 91 KKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYC 143
+ + P L++ + +D+ AYF VP+ +++ + Y
Sbjct: 86 DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQ 145
Query: 144 MTCLPFGLASAPQVFAKLTNWIAN--YLRNLGMRVIVYLDDLLLGNQDSV 191
LP G +P +F I N + + Y+DDL +G+ ++
Sbjct: 146 YNVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDDLYVGSDLAI 195
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 424
Score = 45.7 bits (108), Expect = 7e-06
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 91 KKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDT-------LYC 143
+ + P L++ + +D+ AYF VP+ +++ + Y
Sbjct: 82 DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQ 141
Query: 144 MTCLPFGLASAPQVFAKLTNWI--ANYLRNLGMRVIVYLDDLLLG 186
LP G +P +F I +N + + Y+DDL +G
Sbjct: 142 YNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVG 186
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 2 [TaxId: 11709]}
Length = 427
Score = 42.6 bits (100), Expect = 7e-05
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 91 KKFHLINHFRVPDFLQRGDFLVKIDLSQAYFHVPIRPSHQ-------RFLSVVYRDTLYC 143
+ P L + + +D+ AYF +P+ + ++ Y
Sbjct: 84 DFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVNNAEPGKRYI 143
Query: 144 MTCLPFGLASAPQVFAKLTNWIANYLR 170
LP G +P +F + R
Sbjct: 144 YKVLPQGWKGSPAIFQHTMRQVLEPFR 170
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 32.9 bits (75), Expect = 0.027
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 8/116 (6%)
Query: 280 VSTDASNSG------WGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALERKLPVLQDK 333
+S D + G + + + + N+ E A+ L ++
Sbjct: 7 LSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKE--RNS 64
Query: 334 VVLIQSDNQTVVSYIHKEGGTKSFKLLREVEALFDLAVRHNITLMARYIPGKFNTW 389
I S++QT + ++ + + E ++ L L W
Sbjct: 65 RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKW 120
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 31.1 bits (69), Expect = 0.12
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 24/147 (16%)
Query: 277 QVFVSTDAS------NSGWGAIVDNHSLGGVWSDHQEMWHINLKEMFAVRSALER----- 325
QV + T S G+GAI+ +S N E+ A ALE
Sbjct: 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHA 61
Query: 326 KLPVLQDKVVLIQSDNQTVVSYIHKEGGTKSFKLLREVEAL---FDLAVRHNITLMARYI 382
++ + D + Q Q + ++ + T K ++ V+ +H I ++
Sbjct: 62 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE--WV 119
Query: 383 PG----KFNTWADSLSRQ----KELPD 401
G N AD L+R L D
Sbjct: 120 KGHAGHPENERADELARAAAMNPTLED 146
>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 274
Score = 27.6 bits (61), Expect = 2.9
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 244 KQSTIQRYLLTLTQIQWWSVALHRSSP----IFPQAPQVFVSTDASNSGWGAIVDNHSLG 299
K++++ + Q + S F + + +S W I + S
Sbjct: 174 KEASLTEQEKDYPETQSVFLESSDSKKNIGYFFFKKSSISMSKALQKGAWKDINEGQSDK 233
Query: 300 GVWSDHQEMWH 310
V ++ +
Sbjct: 234 EVENEFLTISQ 244
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 27.1 bits (59), Expect = 4.0
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 90 LKKFHLINHFRVPD-FLQ--RGDFLVKIDLSQAYFHVPIRPSHQRFLSVVYRDTLYCMTC 146
LK +I V FL+ R + A+ P+ + +S + +
Sbjct: 15 LKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIA 74
Query: 147 LPFGLASAPQVFAKLTNWIANYLRNL 172
+ +V + W A + +
Sbjct: 75 NLKPGMNILEVGTG-SGWNAALISEI 99
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon
Desulfurococcus mobilis [TaxId: 2274]}
Length = 80
Score = 25.7 bits (56), Expect = 4.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 160 KLTNWIANYLRNLGMRVIVYLDD 182
L ++ +L NLG+R ++LDD
Sbjct: 34 ALLEIVSRWLNNLGVRNTIHLDD 56
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 26.1 bits (57), Expect = 5.1
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 52 RHTAILLLLCSGRRVHDLTLLLSSRDGFQDLGDRAFLSLKKFHLINHFRVPDFLQRGDFL 111
R + L+ G + S R+ LSL + H+ + + G
Sbjct: 19 REESQRLIGQQGLVDGLFLVRESQRNPQG-----FVLSLCHLQKVKHYLILPSEEEGRLY 73
Query: 112 VKIDLSQAYF 121
+D Q F
Sbjct: 74 FSMDDGQTRF 83
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 26.4 bits (57), Expect = 6.5
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 156 QVFAKLTNWIANYLRNLGMR-VIVYLDDLLLGNQDSVLLRSQARAAVATLQSLRWSVNLE 214
Q N++ Y++ G + ++ + G QDS L A+ AV +++
Sbjct: 20 QEIEDRVNFLKQYVKKTGAKGFVLGIS----GGQDSTLAGRLAQLAVESIREEGGDAQ-F 74
Query: 215 RSVLWPVQTCQYLGIMWN 232
+V P T Q
Sbjct: 75 IAVRLPHGTQQDEDDAQL 92
>d1x1ia3 b.30.5.2 (A:387-659) Xanthan lyase {Bacillus sp. gl1
[TaxId: 84635]}
Length = 273
Score = 26.0 bits (57), Expect = 9.4
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 243 EKQSTIQRYLLTLTQIQWWSVALHRSSP-----IFPQAPQVFVSTDASNSGWGAIVDNHS 297
ST TLT + W +A + + FP + +A W I + +
Sbjct: 169 AALSTGLGVAQTLTGVNWVHLAGNTADGSDIGYYFPGGATLQTKREARTGTWKQINNRPA 228
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.430
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,744,623
Number of extensions: 80157
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 14
Length of query: 460
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,199,356
Effective search space: 446160432
Effective search space used: 446160432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.3 bits)