BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4049
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 335 bits (860), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 280/525 (53%), Gaps = 42/525 (8%)
Query: 1 RFKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQ 60
+ + F+T+PI+YVNA+PHIGH+Y+ L+ D R+ ++ R+ ++ TGTDEHG K+
Sbjct: 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFAL--TGTDEHGQKVA 63
Query: 61 NAAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSI 120
AA + ++ DF ++ ++K F+ D +++RTT+E H V +WTKL+Q+ I
Sbjct: 64 EAAKQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
Query: 121 YPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEW 180
Y +Y+GWY +S+ESFL I D+ VS+ES V W
Sbjct: 124 YLGRYEGWYSISDESFLTPQNITDGV---------------DKDGNPCKVSLESGHVVTW 168
Query: 181 VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH-W 239
V E+NYMF+LS + + W N + P+ ++ + D+SVSR +A +H W
Sbjct: 169 VSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNW 228
Query: 240 GIPVPDDDTQTIYVWLDALMNYLT---------------VSGYPDFHTWPPHIQILGKDI 284
IPVP + +YVWLDAL NYLT V + + +P + ++GKDI
Sbjct: 229 AIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDI 288
Query: 285 LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRY 344
LKFH IYWPAFL++AGL PK + H WT D K+SKS+GNV DP+ K +F L+Y
Sbjct: 289 LKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKY 348
Query: 345 FLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVM 404
FLLRE D +YS+ LN ELA+TLGNL+ RC S IN + P
Sbjct: 349 FLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWP------SPAA 402
Query: 405 FTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464
+T+E LI+ + L +Y + K + ++ VL N ++ PW L K +
Sbjct: 403 YTEED--ESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD 460
Query: 465 KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
E L VL +T E +R+ + L PI+P+ + + LG+P R
Sbjct: 461 P-ERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHR 504
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 280/525 (53%), Gaps = 42/525 (8%)
Query: 1 RFKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQ 60
+ + F+T+PI+YVNA+PHIGH+Y+ L+ D R+ ++ R+ ++ TGTDEHG K+
Sbjct: 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFAL--TGTDEHGQKVA 63
Query: 61 NAAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSI 120
AA + ++ DF ++ ++K F+ D +++RTT+E H V +WTKL+Q+ I
Sbjct: 64 EAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
Query: 121 YPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEW 180
Y +Y+GWY +S+ESFL I D+ VS+ES V W
Sbjct: 124 YLGRYEGWYSISDESFLTPQNITDGV---------------DKDGNPCKVSLESGHVVTW 168
Query: 181 VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH-W 239
V E+NYMF+LS + + W N + P+ ++ + D+SVSR +A +H W
Sbjct: 169 VSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNW 228
Query: 240 GIPVPDDDTQTIYVWLDALMNYLT---------------VSGYPDFHTWPPHIQILGKDI 284
IPVP + +YVWLDAL NYLT V + + +P + ++GKDI
Sbjct: 229 AIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDI 288
Query: 285 LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRY 344
LKFH IYWPAFL++AGL PK + H WT D K+SKS+GNV DP+ K +F L+Y
Sbjct: 289 LKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKY 348
Query: 345 FLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVM 404
FLLRE D +YS+ LN ELA+TLGNL+ RC S IN + P
Sbjct: 349 FLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWP------SPAA 402
Query: 405 FTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464
+T+E LI+ + L +Y + K + ++ VL N ++ PW L K +
Sbjct: 403 YTEED--ESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD 460
Query: 465 KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
E L VL +T E +R+ + L PI+P+ + + LG+P R
Sbjct: 461 P-ERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHR 504
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 280/525 (53%), Gaps = 42/525 (8%)
Query: 1 RFKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQ 60
+ + F+T+PI+YVNA+PHIGH+Y+ L+ D R+ ++ R+ ++ TGTDEHG K+
Sbjct: 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFAL--TGTDEHGQKVA 63
Query: 61 NAAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSI 120
AA + ++ DF ++ ++K F+ D +++RTT+E H V +WTKL+Q+ I
Sbjct: 64 EAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
Query: 121 YPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEW 180
Y +Y+GWY +S+ESFL I D+ VS+ES V W
Sbjct: 124 YLGRYEGWYSISDESFLTPQNITDGV---------------DKDGNPCKVSLESGHVVTW 168
Query: 181 VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH-W 239
V E+NYMF+LS + + W N + P+ ++ + D+SVSR +A +H W
Sbjct: 169 VSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNW 228
Query: 240 GIPVPDDDTQTIYVWLDALMNYLT---------------VSGYPDFHTWPPHIQILGKDI 284
IPVP + +YVWLDAL NYLT V + + +P + ++GKDI
Sbjct: 229 AIPVPGNPDHCVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDI 288
Query: 285 LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRY 344
LKFH IYWPAFL++AGL PK + H WT D K+SKS+GNV DP+ K +F L+Y
Sbjct: 289 LKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKY 348
Query: 345 FLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVM 404
FLLRE D +YS+ LN ELA+TLGNL+ RC S IN + P
Sbjct: 349 FLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWP------SPAA 402
Query: 405 FTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464
+T+E LI+ + L +Y + K + ++ VL N ++ PW L K +
Sbjct: 403 YTEED--ESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD 460
Query: 465 KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
E L VL +T E +R+ + L PI+P+ + + LG+P R
Sbjct: 461 P-ERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHR 504
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/519 (36%), Positives = 278/519 (53%), Gaps = 41/519 (7%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
F TTPI+YVNASPHIGH+Y+ L+ D R+ ++ + + TGTDEHG K+ AA K
Sbjct: 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEV--FVMTGTDEHGQKVAEAAAKQ 86
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ +DF +S ++K F+ + + +++RTT+ H + V +W KL + IY KY+
Sbjct: 87 GVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYE 146
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
GWY VS+ESFL + D + VS+ES V WVEE+NY
Sbjct: 147 GWYSVSDESFLTAQNVADG---------------VDRDGKPCKVSLESGHVVTWVEEENY 191
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARV-HWGIPVPD 245
MF+LS + + + + + + P+ ++ + D+S+SR + V +W IPVP
Sbjct: 192 MFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG 251
Query: 246 DDTQTIYVWLDALMNYLTVS--------------GYPDFHTWPPHIQILGKDILKFHGIY 291
D+ IYVWLDAL NY T + + + WP + ++GKDILKFH IY
Sbjct: 252 DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIY 311
Query: 292 WPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGT 351
WPAFL++A L P+ + H WT D K+SKS+GN DP+ K +F L+YFL+RE
Sbjct: 312 WPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESN 371
Query: 352 NHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVL 411
D +YS+ LN ELA+TLGNL++RC++ IN + + P E E + +
Sbjct: 372 FQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWP----EPAEYSESDK--- 424
Query: 412 TELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNL 471
LI + L V +Y + + +I VL N ++ PW L K + L
Sbjct: 425 -TLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMD-TARLGT 482
Query: 472 VLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERL 510
VL VT E LRIC + LQP++P+ A +++ LG+P R+
Sbjct: 483 VLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARV 521
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 314 bits (805), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 180/512 (35%), Positives = 267/512 (52%), Gaps = 39/512 (7%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+ITT I Y N PHIGH Y + DA RF +L + + TGTD HG K+ A K
Sbjct: 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYL--TGTDVHGQKMAETAAKE 72
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ + + SD ++ + + +I + ++RT+ H+ +W ++ IY + YK
Sbjct: 73 GIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYK 132
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
GWY + +E F E++ E+ +G ++ E+ PV W EEQ Y
Sbjct: 133 GWYSIRDERFFTENETT-------------------EQPDGTRIATETGAPVTWTEEQTY 173
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F+LS Y + + +++ + + P N++ + S D+S+SR WG+PVPD
Sbjct: 174 FFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISR--TTFDWGVPVPDH 231
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHT------WPPHIQILGKDILKFHGIYWPAFLIAAG 300
+YVW+DAL NYLT G+PD + WP + ++GKDI++FH +YWPAFL++AG
Sbjct: 232 PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG 291
Query: 301 LEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSE 360
L PK H G KMSKS+GNVVDP++ + F +RYFLLRE D +Y+E
Sbjct: 292 LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNE 351
Query: 361 TKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQT 420
+NA+LAN LGNL R L S+ N+ V FT E T L+
Sbjct: 352 DAIIGRVNADLANELGNLAQRSL--SMVAKNLGAAVPDPG---EFTDED--TALLAAADA 404
Query: 421 LHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEE---LNLVLGVTF 477
L E V+ H+ + +++I VL AN++ +PW LRK + E+ VL T
Sbjct: 405 LLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTL 464
Query: 478 EVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
EV+RI + LQP++P+ KLL LG PT+ER
Sbjct: 465 EVVRIASLLLQPVMPESTAKLLDLLGQPTDER 496
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 314 bits (804), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 177/499 (35%), Positives = 268/499 (53%), Gaps = 41/499 (8%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
++TTPI+YVN PH+GH YT + AD R+ +L + + TGTDEHGLKIQ A +
Sbjct: 8 YVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDV--FFLTGTDEHGLKIQKKAEEL 65
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ + ++ ++++K +++ IEYT ++RTT +H + V V+ + +R IY +Y+
Sbjct: 66 GISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYE 125
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
GWYCV E F E ++ D H +K E+++E +Y
Sbjct: 126 GWYCVGCEEFKSEAELAED-----------HTCPIHQKK------------CEYIKEPSY 162
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F+LS Y + + +KN + ++P N++ + + D+SV+RP++RV WGIPVP D
Sbjct: 163 FFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD 222
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKS 306
TIYVW DAL NY++ WP + ++GKDIL+FH +YWPAFL++ G E PK
Sbjct: 223 PEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKK 282
Query: 307 FLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNI 366
H WTV+G KMSK++GNVVDP + ++ +RYFLLRE D ++S+ N
Sbjct: 283 VFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNR 342
Query: 367 LNAELANTLGNLLNRC--LSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHED 424
+N ELAN +GNL +R ++ V+ + E ++ E I+N + E
Sbjct: 343 INGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIA-------QESIKNYENYMEK 395
Query: 425 VKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICG 484
V NFYK ++ I+ NK++D +PW L KE K EEL VL + L +
Sbjct: 396 V-------NFYKAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLT 448
Query: 485 IGLQPIVPKLADKLLTRLG 503
L PI P + L LG
Sbjct: 449 HLLYPITPNKMKEALQMLG 467
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/515 (34%), Positives = 258/515 (50%), Gaps = 43/515 (8%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ +ITT I Y N PHIGH Y + DA RF +L + TGTDEHG+K+ +
Sbjct: 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNG--MDVYFLTGTDEHGIKMLQS 81
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A K + D ++ + ++ M + + Y+RT+ E H++ +W + IY
Sbjct: 82 ARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYK 141
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
Y GWY V +E++ E E ++R D G PVEWVE
Sbjct: 142 GGYAGWYSVRDEAYYGEE---------------ETEVRADGVRYG-----PQGTPVEWVE 181
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242
E++Y F+LS Y + + + N + P + N++ + D+S+SR WGIP
Sbjct: 182 EESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISR--TTFDWGIP 239
Query: 243 VPDDDTQTIYVWLDALMNYLTVSGYPD-----FHTWPPHIQILGKDILKFHGIYWPAFLI 297
VP D+ +YVW+DAL NY+T GYPD + WP + I+GKDI +FH +YWPAFL+
Sbjct: 240 VPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLM 299
Query: 298 AAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSN 357
+A L PK H G KMSKSVGNV+DP + + LRYFL+RE D +
Sbjct: 300 SAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGS 359
Query: 358 YSETKAKNILNAELANTLGNLLNRCLS---KSINPDNVNPLVNRECYEVMFTKEPVLTEL 414
YS N NA+LAN LGNL R LS K+ P E + + +
Sbjct: 360 YSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADA---A 416
Query: 415 IENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLG 474
+E + +D LH + + +I V+ AN++ +PW LRK + + VL
Sbjct: 417 LETARKAMDDQALHLA-------LGAIFAVVAEANRYFAGQEPWALRKTDPA-RMGTVLY 468
Query: 475 VTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
VT EVLR GI +QP +P+ A+KLL L +P ++R
Sbjct: 469 VTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR 503
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 259/522 (49%), Gaps = 56/522 (10%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
++TTPI+YVNA PH+GH YT ++AD R+ +L R + TGTDEHG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR--TFFLTGTDEHGETVYRAAQAA 63
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ F +++S ++K + I Y ++RTT E H + V V K+ + IY +Y+
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
G YCVS E F E ++ E H +PVE +E NY
Sbjct: 124 GLYCVSCERFYTEKEL-------VEGLCPIH-----------------GRPVERRKEGNY 159
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F++ Y + ++ +N D+++P+ + N++ M +E D+S+SRPK+RV WGIP+P D
Sbjct: 160 FFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD 219
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHT----WPPHIQILGKDILKFHGIYWPAFLIAAGLE 302
+ YVW DAL+NY++ YP+ WP ++GKDILK H ++WP L AAG+
Sbjct: 220 ENHVTYVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIP 279
Query: 303 PPKSFLVHSHWTV-------DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355
++ H V DG KMSK++GNVVDP + L + LRY+LLRE D
Sbjct: 280 ------MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQD 333
Query: 356 SNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELI 415
+ SE + A+LA+ LGNL+ R + + EPV E +
Sbjct: 334 TPVSEEALRTRYEADLADDLGNLVQRTRAMLFR------------FAEGRIPEPVAGEEL 381
Query: 416 ENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGV 475
L ++ E F+ ++ + + N++I+ KPW L K+ EE VL
Sbjct: 382 AEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP-EEARAVLYR 440
Query: 476 TFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRFS 517
E LRI I L P +P +L LG+ RL + R+
Sbjct: 441 VVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWG 482
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/522 (32%), Positives = 259/522 (49%), Gaps = 56/522 (10%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
++TTPI+YVNA PH+GH YT ++AD R+ +L R + TGTDEHG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR--TFFLTGTDEHGETVYRAAQAA 63
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ F +++S ++K + I Y ++RTT E H + V V K+ + IY +Y+
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
G YCVS E F E ++ E H +PVE +E NY
Sbjct: 124 GLYCVSCERFYTEKEL-------VEGLCPIH-----------------GRPVERRKEGNY 159
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F++ Y + ++ +N D+++P+ + N++ M +E D+S+SRPK+RV WGIP+P D
Sbjct: 160 FFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD 219
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHT----WPPHIQILGKDILKFHGIYWPAFLIAAGLE 302
+ +VW DAL+NY++ YP+ WP ++GKDILK H ++WP L AAG+
Sbjct: 220 ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIP 279
Query: 303 PPKSFLVHSHWTV-------DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355
++ H V DG KMSK++GNVVDP + L + LRY+LLRE D
Sbjct: 280 ------MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQD 333
Query: 356 SNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELI 415
+ SE + A+LA+ LGNL+ R + + EPV E +
Sbjct: 334 TPVSEEALRTRYEADLADDLGNLVQRTRAMLFR------------FAEGRIPEPVAGEEL 381
Query: 416 ENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGV 475
L ++ E F+ ++ + + N++I+ KPW L K+ EE VL
Sbjct: 382 AEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP-EEARAVLYR 440
Query: 476 TFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRFS 517
E LRI I L P +P +L LG+ RL + R+
Sbjct: 441 VVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWG 482
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/522 (32%), Positives = 258/522 (49%), Gaps = 56/522 (10%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
++TTPI+YVNA PH+GH YT ++AD R+ +L R + TGTDEHG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR--TFFLTGTDEHGETVYRAAQAA 63
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ F +++S ++K + I Y ++RTT E H + V V K+ + IY +Y+
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
G YCVS E F E ++ E H +PVE +E NY
Sbjct: 124 GLYCVSCERFYTEKEL-------VEGLCPIH-----------------GRPVERRKEGNY 159
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F++ Y + ++ +N D+++P+ + N++ M +E D+S+SRPK+RV WGIP+P D
Sbjct: 160 FFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD 219
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHT----WPPHIQILGKDILKFHGIYWPAFLIAAGLE 302
+ VW DAL+NY++ YP+ WP ++GKDILK H ++WP L AAG+
Sbjct: 220 ENHVTAVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIP 279
Query: 303 PPKSFLVHSHWTV-------DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355
++ H V DG KMSK++GNVVDP + L + LRY+LLRE D
Sbjct: 280 ------MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQD 333
Query: 356 SNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELI 415
+ SE + A+LA+ LGNL+ R + + EPV E +
Sbjct: 334 TPVSEEALRTRYEADLADDLGNLVQRTRAMLFR------------FAEGRIPEPVAGEEL 381
Query: 416 ENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGV 475
L ++ E F+ ++ + + N++I+ KPW L K+ EE VL
Sbjct: 382 AEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP-EEARAVLYR 440
Query: 476 TFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRFS 517
E LRI I L P +P +L LG+ RL + R+
Sbjct: 441 VVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWG 482
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 234/541 (43%), Gaps = 81/541 (14%)
Query: 8 ITTPIFYVNASPHIGHLYTALL-ADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T+ + Y N H GHL A L AD R+++L + + GTDEHG I A+K
Sbjct: 6 VTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDV--VFICGTDEHGTPISFRALKE 63
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++ +Q K+ F+ I + + RT H++ + K + + K
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 127 GWYCVSEESFLLEHQI--------RPDEKNEE-----ESFLLEHQIRPDEKNEGQYVSIE 173
YC ++ FL + + D+K ++ E I P
Sbjct: 124 QAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPR--------CAI 175
Query: 174 SNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMC-SEIENDISVSR 232
+P+ + + +Y K+ ++ + W++K KP ++NM S IE +
Sbjct: 176 CGRPISFRDSAHYYIKMQDFAERLKRWIEKQP--WKP-----NVKNMVLSWIEEGLEERA 228
Query: 233 PKARVHWGIPVPDDD----TQTIYVWLDALMNYLTVS-------GYPDFHTWPPH----- 276
++WGIPVP D+ + +YVW +A + Y++++ G P+ W +
Sbjct: 229 ITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPN--EWKKYWLNID 286
Query: 277 -----IQILGKDILKFHGIYWPAFLIAAG------LEP----PKSFLVHSHWTVDGVKMS 321
I +GKD + FH I+WPAFL+A G +E P + + T++G K S
Sbjct: 287 GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFS 346
Query: 322 KSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNR 381
S + L F + LRY+L DS++S + K +N EL N LGN ++R
Sbjct: 347 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHR 406
Query: 382 CLSKSINPDNVNPLVNRECYEVMFTKEPVLTEL----IENCQTLHEDVKLHYSEFNFYKG 437
L+ VNR ++ + + L EL +E + ++V + F
Sbjct: 407 ALT----------FVNR-YFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDA 455
Query: 438 VDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADK 497
+ ++ + N++ D +PW KE+K+ + ++ ++++ GI L+P +P ++K
Sbjct: 456 LKRVMSLASFGNRYFDHKQPWKTAKEDKV-RTGTTVNISLQIVKALGILLEPFLPDASEK 514
Query: 498 L 498
+
Sbjct: 515 I 515
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 122/546 (22%), Positives = 228/546 (41%), Gaps = 74/546 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T + Y N S H+GH+ + AD R+ ++ ++ I D HG I A +
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI--CADDAHGTPIMLKAQQL 65
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 66 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 125
Query: 127 GWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEE 183
Y + FL + ++ P K+ PD+ + V + P E +E
Sbjct: 126 QLYDPEKGMFLPDRFVKGTCPKCKS------------PDQYGDNCEVCGATYSPTELIEP 173
Query: 184 QNYMFKLSNYINDVAHWL-------DKNEDVVKPKKFYNQLRNMCSE------IENDISV 230
++ + + + D H+ + + + Q+ N E + DIS
Sbjct: 174 KSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISR 233
Query: 231 SRPKARVHWGIPVPDDDTQTIYVWLDALMNYL--------------TVSGYPDFHTWPPH 276
P ++G +P+ + YVWLDA + Y+ + Y +
Sbjct: 234 DAP----YFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 289
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
+GKDI+ FH ++WPA L + P + VH + TV+G KMSKS G + + L+
Sbjct: 290 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 337 FTSCGLRYFL---LREGTNHSDSNYSETKAKNILNAELANTLGNLLNR---CLSKSINPD 390
F + LRY+ L + D N + + +NA++ N + NL +R ++K +
Sbjct: 350 FDADSLRYYYTAKLSSRIDDIDLNLEDFVQR--VNADIVNKVVNLASRNAGFINKRFDGV 407
Query: 391 NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANK 450
+ L + + Y+ V+ E E+ + F K V I+ + LAN+
Sbjct: 408 LASELADPQLYKTFTDAAEVIGEAWESRE--------------FGKAVREIMALADLANR 453
Query: 451 FIDTTKPWTLRK-ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
++D PW + K E + +L + + + R+ L+P++PKL ++ L E
Sbjct: 454 YVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL---NTEL 510
Query: 510 LWDNMR 515
WD ++
Sbjct: 511 TWDGIQ 516
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 122/546 (22%), Positives = 228/546 (41%), Gaps = 74/546 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T + Y N S H+GH+ + AD R+ ++ ++ I D HG I A +
Sbjct: 9 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI--CADDAHGTPIMLKAQQL 66
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 67 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 126
Query: 127 GWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEE 183
Y + FL + ++ P K+ PD+ + V + P E +E
Sbjct: 127 QLYDPEKGMFLPDRFVKGTCPKCKS------------PDQYGDNCEVCGATYSPTELIEP 174
Query: 184 QNYMFKLSNYINDVAHWL-------DKNEDVVKPKKFYNQLRNMCSE------IENDISV 230
++ + + + D H+ + + + Q+ N E + DIS
Sbjct: 175 KSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISR 234
Query: 231 SRPKARVHWGIPVPDDDTQTIYVWLDALMNYL--------------TVSGYPDFHTWPPH 276
P ++G +P+ + YVWLDA + Y+ + Y +
Sbjct: 235 DAP----YFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 290
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
+GKDI+ FH ++WPA L + P + VH + TV+G KMSKS G + + L+
Sbjct: 291 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 350
Query: 337 FTSCGLRYFL---LREGTNHSDSNYSETKAKNILNAELANTLGNLLNR---CLSKSINPD 390
F + LRY+ L + D N + + +NA++ N + NL +R ++K +
Sbjct: 351 FDADSLRYYYTAKLSSRIDDIDLNLEDFVQR--VNADIVNKVVNLASRNAGFINKRFDGV 408
Query: 391 NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANK 450
+ L + + Y+ V+ E E+ + F K V I+ + LAN+
Sbjct: 409 LASELADPQLYKTFTDAAEVIGEAWESRE--------------FGKAVREIMALADLANR 454
Query: 451 FIDTTKPWTLRK-ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
++D PW + K E + +L + + + R+ L+P++PKL ++ L E
Sbjct: 455 YVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL---NTEL 511
Query: 510 LWDNMR 515
WD ++
Sbjct: 512 TWDGIQ 517
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 122/546 (22%), Positives = 228/546 (41%), Gaps = 74/546 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T + Y N S H+GH+ + AD R+ ++ ++ I D HG I A +
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI--CADDAHGTPIMLKAQQL 65
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 66 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 125
Query: 127 GWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEE 183
Y + FL + ++ P K+ PD+ + V + P E +E
Sbjct: 126 QLYDPEKGMFLPDRFVKGTCPKCKS------------PDQYGDNCEVCGATYSPTELIEP 173
Query: 184 QNYMFKLSNYINDVAHWL-------DKNEDVVKPKKFYNQLRNMCSE------IENDISV 230
++ + + + D H+ + + + Q+ N E + DIS
Sbjct: 174 KSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISR 233
Query: 231 SRPKARVHWGIPVPDDDTQTIYVWLDALMNYL--------------TVSGYPDFHTWPPH 276
P ++G +P+ + YVWLDA + Y+ + Y +
Sbjct: 234 DAP----YFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 289
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
+GKDI+ FH ++WPA L + P + VH + TV+G KMSKS G + + L+
Sbjct: 290 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 337 FTSCGLRYFL---LREGTNHSDSNYSETKAKNILNAELANTLGNLLNR---CLSKSINPD 390
F + LRY+ L + D N + + +NA++ N + NL +R ++K +
Sbjct: 350 FDADSLRYYYTAKLSSRIDDIDLNLEDFVQR--VNADIVNKVVNLASRNAGFINKRFDGV 407
Query: 391 NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANK 450
+ L + + Y+ V+ E E+ + F K V I+ + LAN+
Sbjct: 408 LASELADPQLYKTFTDAAEVIGEAWESRE--------------FGKAVREIMALADLANR 453
Query: 451 FIDTTKPWTLRK-ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
++D PW + K E + +L + + + R+ L+P++PKL ++ L E
Sbjct: 454 YVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL---NTEL 510
Query: 510 LWDNMR 515
WD ++
Sbjct: 511 TWDGIQ 516
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/546 (22%), Positives = 227/546 (41%), Gaps = 74/546 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T + Y N S H+GH+ + AD R+ ++ ++ I D HG I A +
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI--CADDAHGTPIMLKAQQL 65
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 66 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 125
Query: 127 GWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEE 183
Y + FL + ++ P K+ PD+ + V + P E +E
Sbjct: 126 QLYDPEKGMFLPDRFVKGTCPKCKS------------PDQYGDNCEVCGATYSPTELIEP 173
Query: 184 QNYMFKLSNYINDVAHWL-------DKNEDVVKPKKFYNQLRNMCSE------IENDISV 230
++ + + + D H+ + + + Q+ N E + DIS
Sbjct: 174 KSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISR 233
Query: 231 SRPKARVHWGIPVPDDDTQTIYVWLDALMNYL--------------TVSGYPDFHTWPPH 276
P ++G +P+ + YVWLDA + Y+ + Y +
Sbjct: 234 DAP----YFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 289
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
+GKDI+ FH ++WPA L + P + VH + TV+G KMSKS G + + L+
Sbjct: 290 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 337 FTSCGLRYFL---LREGTNHSDSNYSETKAKNILNAELANTLGNLLNR---CLSKSINPD 390
F + LRY+ L + D N + + +NA++ N + NL +R ++K +
Sbjct: 350 FDADSLRYYYTAKLSSRIDDIDLNLEDFVQR--VNADIVNKVVNLASRNAGFINKRFDGV 407
Query: 391 NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANK 450
+ L + Y+ V+ E E+ + F K V I+ + LAN+
Sbjct: 408 LASELADPALYKTFTDAAEVIGEAWESRE--------------FGKAVREIMALADLANR 453
Query: 451 FIDTTKPWTLRKE-NKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
++D PW + K+ + +L + + + R+ L+P++PKL ++ L E
Sbjct: 454 YVDEQAPWVVAKQAGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL---NTEL 510
Query: 510 LWDNMR 515
WD ++
Sbjct: 511 TWDGIQ 516
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 120/546 (21%), Positives = 225/546 (41%), Gaps = 74/546 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T Y N S H+GH+ + AD R+ ++ ++ I D HG I A +
Sbjct: 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI--CADDAHGTPIMLKAQQL 78
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 79 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 138
Query: 127 GWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEE 183
Y + FL + ++ P K+ PD+ + V + P E +E
Sbjct: 139 QLYDPEKGMFLPDRFVKGTCPKCKS------------PDQYGDNCEVCGATYSPTELIEP 186
Query: 184 QNYMFKLSNYINDVAHWL-------DKNEDVVKPKKFYNQLRNMCSE------IENDISV 230
++ + + + D H+ + + + Q+ N E + DIS
Sbjct: 187 KSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISR 246
Query: 231 SRPKARVHWGIPVPDDDTQTIYVWLDALMNYL--------------TVSGYPDFHTWPPH 276
P ++G +P+ + YVWLDA + + + Y +
Sbjct: 247 DAP----YFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 302
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
+GKDI+ F ++WPA L + P + VH + TV+G KMSKS G + + L+
Sbjct: 303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH 362
Query: 337 FTSCGLRYFL---LREGTNHSDSNYSETKAKNILNAELANTLGNLLNR---CLSKSINPD 390
F + LRY+ L + D N + + +NA++ N + NL +R ++K +
Sbjct: 363 FDADSLRYYYTAKLSSRIDDIDLNLEDFVQR--VNADIVNKVVNLASRNAGFINKRFDGV 420
Query: 391 NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANK 450
+ L + + Y+ V+ E E+ + F K V I+ + LAN+
Sbjct: 421 LASELADPQLYKTFTDAAEVIGEAWESRE--------------FGKAVREIMALADLANR 466
Query: 451 FIDTTKPWTLRK-ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509
++D PW + K E + +L + + + R+ L+P++PKL ++ L E
Sbjct: 467 YVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL---NTEL 523
Query: 510 LWDNMR 515
WD ++
Sbjct: 524 TWDGIQ 529
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 240 GIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHT-----WPPHIQILGKDILKFHGIYWPA 294
G P D W + + L+ G+P+ +P + + G DIL W +
Sbjct: 442 GSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDIL----FLWVS 497
Query: 295 FLIAAGL-----EPPKSFLVHSHWTVD--GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
+ +G P K+ L+H +D G KMSKS GNV+DP+ + + + LR+ L+
Sbjct: 498 RMEVSGYHFMGERPFKTVLLHGL-VLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALI 556
Query: 348 REGTNHSD 355
T D
Sbjct: 557 YLATGGQD 564
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 317 GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYS 359
G KMSKS GNVVDP + F + LR+++ +D +
Sbjct: 589 GQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 631
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 266 GYPDFHTW-PPHIQILGKDILKFHGIY---WPAFLIAAGLEP---PKSFLVHSHWTV--D 316
Y F W P + I G++ H +Y W L + P P L++ + D
Sbjct: 348 AYEAFSKWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKD 407
Query: 317 GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSET 361
G KMSKS+GNVV+P + +F + LR + + G ++E+
Sbjct: 408 GQKMSKSLGNVVNPDEIIQNFGADTLRVYEMFMGPLTDTKKWNES 452
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 269 DFHTW-PPHIQILGKDILKFHGIYWPAFLIAAGLEP--PKSFLVHSHWTVDGVKMSKSVG 325
+F W P + GKD++ H ++ +A E PK V+ T++G KMSKS G
Sbjct: 597 EFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKG 656
Query: 326 NVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNY 358
NV++ + + + + +R +++ + SD ++
Sbjct: 657 NVLNFIDAIEENGADVVRLYIMSLAEHDSDFDW 689
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 269 DFHTW-PPHIQILGKDILKFHGIYWPAFLIAAGLEP--PKSFLVHSHWTVDGVKMSKSVG 325
+F W P + GKD++ H ++ +A E PK V+ T++G KMSKS G
Sbjct: 597 EFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKG 656
Query: 326 NVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNY 358
NV++ + + + + +R +++ + SD ++
Sbjct: 657 NVLNFIDAIEENGADVVRLYIMSLAEHDSDFDW 689
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 203 KNEDVVKPKKFYNQLRNMCSEIENDISVSR------PKARVHWGIP--VPDDDTQTIYVW 254
+N +++ K+ N + ++ +E ++I R P+ H G P +T + VW
Sbjct: 469 ENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVW 528
Query: 255 LDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAA---GLEPPKSFLVHS 311
D+ ++ V ++P + + G D ++ G + + + G+ P K L H
Sbjct: 529 FDSGSSHRGVLETRPELSFPADMYLEGSD--QYRGWFNSSITTSVATRGVSPYKFLLSHG 586
Query: 312 H-WTVDGVKMSKSVGNVVDP 330
+G KMSKS+GNV+ P
Sbjct: 587 FVMDGEGKKMSKSLGNVIVP 606
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-----HKL 68
Y N + H+GH +L D R+ + + G D HGL I+ A K K+
Sbjct: 58 YANGNLHMGHALNKILKDFIVRYKTMQG--FYAPYVPGWDTHGLPIEQALTKKGVDRKKM 115
Query: 69 ETIDF---CNKIS-DQYKLMFKTYDIEYTH------YVRTTSEHHFRTVNTVWTKLKQRD 118
T +F C + + +Q +L K + Y+ E+ + ++ ++ +
Sbjct: 116 STAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR-IFGEMADKG 174
Query: 119 SIYPNKYKGWYCVSEESFLLEHQIRPDEK 147
IY K ++ S ES L E +I +K
Sbjct: 175 LIYKGKKPVYWSPSSESSLAEAEIEYHDK 203
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 315 VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANT 374
VD KMSKS+GN L + + +RYFL+ G S NYSE +N+ A A
Sbjct: 262 VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM-SGHYRSQLNYSE---ENLKQARAA-- 315
Query: 375 LGNLLNRCLSKSINPDNVNPLVNRECYEVMFTK 407
L R + D E +E F +
Sbjct: 316 ----LERLYTALRGTDKTVAPAGGEAFEARFIE 344
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKS--FLVHSHWTVD-GVKMSKSVGNVV 328
+Q+L + + K+ G + A+LI AG++P S F +H+H + D G +S G++
Sbjct: 109 LQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLA 162
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKS--FLVHSHWTVD 316
+Q+L + + K+ G + A+LI AG++P S F +H+H + D
Sbjct: 80 LQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTD 120
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKS--FLVHSHWTVD 316
+Q+L + + K+ G + A+LI AG++P S F +H+H + D
Sbjct: 80 LQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTD 120
>pdb|2DVY|A Chain A, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|B Chain B, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|C Chain C, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|D Chain D, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|E Chain E, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|F Chain F, Crystal Structure Of Restriction Endonucleases Pabi
Length = 226
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 88 YDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEK 147
YD E + VR EH T N ++ LK D + +S+L + IR +
Sbjct: 74 YDYELSRMVRLAHEHGILTYNDIYELLKFADDV-------------KSYLEDKGIRREST 120
Query: 148 NEE-ESFLLEHQIRPDEKNE---GQYVSIESNQPVEWVEEQNYMF---KLSNYINDVAHW 200
NEE F + + P K E G+++ I V Q+ ++ L+N +A
Sbjct: 121 NEELYGFNIYEDVYPVAKKELPSGEFIGIVLKHKQRAVGYQSMVYVCIPLTNVEPSLAGR 180
Query: 201 LDKNEDVVK 209
+ + +VVK
Sbjct: 181 VARRNEVVK 189
>pdb|3NT7|C Chain C, Crystal Structure Of Vaccinia Virus Uracil Dna Glycosylase
R187v Mutant
pdb|3NT7|A Chain A, Crystal Structure Of Vaccinia Virus Uracil Dna Glycosylase
R187v Mutant
Length = 238
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRN 219
M +L + N+VA WL ++E P KF+ QL+
Sbjct: 43 MSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQ 75
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 24/104 (23%)
Query: 234 KARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWP 293
K V G P P+D T IY + YLTV + + HI + + KF G
Sbjct: 140 KFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVD-----YEFEKHINLDQIGVYKFEG---- 190
Query: 294 AFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDF 337
+ L SH+ VK+ +V + M KL DF
Sbjct: 191 ------------TRLEKSHFE---VKVVDTVQDYTQLMQKLFDF 219
>pdb|2OWQ|A Chain A, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWQ|B Chain B, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|4DOF|A Chain A, Structures Of Vaccinia Virus Uracil-dna Glycosylase In New
Crystal Forms
pdb|4DOF|B Chain B, Structures Of Vaccinia Virus Uracil-dna Glycosylase In New
Crystal Forms
pdb|4DOF|C Chain C, Structures Of Vaccinia Virus Uracil-dna Glycosylase In New
Crystal Forms
pdb|4DOF|D Chain D, Structures Of Vaccinia Virus Uracil-dna Glycosylase In New
Crystal Forms
Length = 238
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRN 219
M +L + N+VA WL ++E P KF+ QL+
Sbjct: 43 MSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQ 75
>pdb|2OWR|A Chain A, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|B Chain B, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|C Chain C, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|D Chain D, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|E Chain E, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|F Chain F, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|G Chain G, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
pdb|2OWR|H Chain H, Crystal Structure Of Vaccinia Virus Uracil-Dna Glycosylase
Length = 218
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRN 219
M +L + N+VA WL ++E P KF+ QL+
Sbjct: 23 MSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQ 55
>pdb|4DOG|A Chain A, Structures Of Vaccinia Virus Uracil-dna Glycosylase In New
Crystal Forms
Length = 221
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRN 219
M +L + N+VA WL ++E P KF+ QL+
Sbjct: 26 MSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQ 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,605,743
Number of Sequences: 62578
Number of extensions: 722664
Number of successful extensions: 1913
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1796
Number of HSP's gapped (non-prelim): 49
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)