Query psy4049
Match_columns 528
No_of_seqs 185 out of 1529
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 00:01:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0143 MetG Methionyl-tRNA sy 100.0 2E-103 4E-108 812.9 48.3 493 3-506 4-514 (558)
2 PLN02610 probable methionyl-tR 100.0 2.2E-97 5E-102 808.0 47.6 490 3-506 16-534 (801)
3 PRK12267 methionyl-tRNA synthe 100.0 1.6E-95 4E-100 792.2 48.5 474 3-511 3-485 (648)
4 PLN02224 methionine-tRNA ligas 100.0 1.1E-93 2.4E-98 757.4 48.3 469 3-506 68-548 (616)
5 PRK00133 metG methionyl-tRNA s 100.0 2.9E-93 6.4E-98 774.8 47.3 482 4-505 2-504 (673)
6 TIGR00398 metG methionyl-tRNA 100.0 6.4E-93 1.4E-97 758.4 47.5 486 6-506 1-505 (530)
7 PRK12268 methionyl-tRNA synthe 100.0 2.7E-91 5.8E-96 750.0 45.0 495 3-514 2-521 (556)
8 KOG0436|consensus 100.0 4.1E-91 8.9E-96 665.3 37.8 483 4-509 39-532 (578)
9 PRK11893 methionyl-tRNA synthe 100.0 8.6E-89 1.9E-93 726.1 47.4 473 4-512 1-485 (511)
10 COG0525 ValS Valyl-tRNA synthe 100.0 4.9E-85 1.1E-89 692.4 39.2 489 4-515 33-712 (877)
11 TIGR00422 valS valyl-tRNA synt 100.0 1E-83 2.3E-88 719.3 42.6 501 3-521 32-722 (861)
12 PRK14900 valS valyl-tRNA synth 100.0 7.6E-83 1.6E-87 716.0 41.7 496 3-521 47-741 (1052)
13 PRK13208 valS valyl-tRNA synth 100.0 1.1E-81 2.3E-86 698.1 43.9 492 3-515 37-718 (800)
14 PRK05729 valS valyl-tRNA synth 100.0 4E-82 8.7E-87 705.7 39.5 487 3-515 35-709 (874)
15 PF09334 tRNA-synt_1g: tRNA sy 100.0 6.6E-84 1.4E-88 655.5 19.4 372 6-383 1-391 (391)
16 PLN02943 aminoacyl-tRNA ligase 100.0 7.3E-81 1.6E-85 695.5 43.8 497 3-515 87-785 (958)
17 PRK05743 ileS isoleucyl-tRNA s 100.0 4.8E-80 1E-84 688.0 41.8 494 3-515 48-785 (912)
18 PTZ00419 valyl-tRNA synthetase 100.0 4.9E-80 1.1E-84 696.2 40.5 505 3-521 59-830 (995)
19 PRK06039 ileS isoleucyl-tRNA s 100.0 9.1E-80 2E-84 690.9 41.6 502 3-522 40-797 (975)
20 PLN02381 valyl-tRNA synthetase 100.0 3.2E-79 7E-84 685.2 41.5 503 3-521 127-899 (1066)
21 PLN02882 aminoacyl-tRNA ligase 100.0 4.3E-78 9.3E-83 679.5 46.2 505 3-522 37-828 (1159)
22 COG0060 IleS Isoleucyl-tRNA sy 100.0 5.5E-79 1.2E-83 654.3 35.2 492 3-515 48-796 (933)
23 PRK13804 ileS isoleucyl-tRNA s 100.0 4.7E-78 1E-82 673.1 43.7 493 3-515 53-823 (961)
24 TIGR00392 ileS isoleucyl-tRNA 100.0 3.9E-78 8.4E-83 675.3 42.7 493 3-515 35-807 (861)
25 PLN02843 isoleucyl-tRNA synthe 100.0 3.1E-77 6.6E-82 666.3 45.0 493 3-515 31-816 (974)
26 PTZ00427 isoleucine-tRNA ligas 100.0 2E-77 4.4E-82 671.1 43.1 487 3-503 101-905 (1205)
27 TIGR00395 leuS_arch leucyl-tRN 100.0 1.2E-73 2.7E-78 638.2 39.8 478 3-516 24-792 (938)
28 cd00817 ValRS_core catalytic c 100.0 5.6E-73 1.2E-77 577.1 29.5 321 4-358 1-382 (382)
29 cd00814 MetRS_core catalytic c 100.0 4.6E-72 9.9E-77 558.9 30.6 310 5-358 1-319 (319)
30 PRK00390 leuS leucyl-tRNA synt 100.0 6.3E-71 1.4E-75 607.7 39.7 446 3-515 31-736 (805)
31 TIGR00396 leuS_bact leucyl-tRN 100.0 7.8E-71 1.7E-75 607.7 39.0 454 3-515 28-773 (842)
32 KOG1247|consensus 100.0 2.2E-71 4.7E-76 529.0 22.2 488 3-506 13-522 (567)
33 PLN02563 aminoacyl-tRNA ligase 100.0 5E-69 1.1E-73 593.6 36.8 451 2-515 108-888 (963)
34 KOG0432|consensus 100.0 3E-69 6.4E-74 557.1 32.2 485 3-506 74-810 (995)
35 PLN02959 aminoacyl-tRNA ligase 100.0 1.1E-67 2.3E-72 594.1 40.6 486 3-522 44-900 (1084)
36 PRK12300 leuS leucyl-tRNA synt 100.0 2.3E-66 5E-71 577.4 37.9 465 19-522 1-754 (897)
37 COG0495 LeuS Leucyl-tRNA synth 100.0 7.4E-66 1.6E-70 548.9 33.6 450 4-515 34-746 (814)
38 KOG0433|consensus 100.0 4.4E-65 9.6E-70 516.0 34.9 476 4-505 58-798 (937)
39 cd00818 IleRS_core catalytic c 100.0 1.9E-65 4.1E-70 513.4 27.5 299 4-358 1-338 (338)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.8E-63 3.8E-68 496.7 26.8 290 5-358 1-312 (312)
41 PF00133 tRNA-synt_1: tRNA syn 100.0 2.2E-63 4.7E-68 534.4 20.4 348 2-359 21-601 (601)
42 KOG0435|consensus 100.0 2.6E-62 5.6E-67 491.7 21.8 464 2-516 56-796 (876)
43 cd00812 LeuRS_core catalytic c 100.0 2.5E-60 5.4E-65 472.5 21.3 288 5-360 1-314 (314)
44 KOG0434|consensus 100.0 7.1E-58 1.5E-62 459.2 26.6 486 3-504 37-785 (1070)
45 PRK00260 cysS cysteinyl-tRNA s 100.0 3.8E-55 8.3E-60 455.5 34.6 412 4-526 24-449 (463)
46 PLN02946 cysteine-tRNA ligase 100.0 9E-55 1.9E-59 450.4 30.7 430 5-526 82-531 (557)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 3.2E-54 6.9E-59 460.3 32.3 424 5-526 62-533 (651)
48 COG0215 CysS Cysteinyl-tRNA sy 100.0 4.7E-54 1E-58 428.1 26.3 411 5-526 24-450 (464)
49 PRK14535 cysS cysteinyl-tRNA s 100.0 1E-52 2.2E-57 436.2 31.2 403 5-526 250-685 (699)
50 PRK14536 cysS cysteinyl-tRNA s 100.0 3.4E-52 7.3E-57 427.5 33.1 424 5-526 25-476 (490)
51 TIGR00435 cysS cysteinyl-tRNA 100.0 1.6E-51 3.5E-56 427.0 34.1 412 4-526 22-452 (465)
52 PRK14534 cysS cysteinyl-tRNA s 100.0 4.5E-51 9.7E-56 416.8 30.8 422 5-526 23-467 (481)
53 PRK12418 cysteinyl-tRNA synthe 100.0 7.1E-50 1.5E-54 399.0 29.5 342 5-455 11-365 (384)
54 TIGR03447 mycothiol_MshC cyste 100.0 2.4E-49 5.3E-54 396.5 27.0 337 5-450 38-387 (411)
55 PF01406 tRNA-synt_1e: tRNA sy 100.0 7.2E-45 1.6E-49 345.8 19.5 286 5-367 10-299 (300)
56 KOG0437|consensus 100.0 3E-42 6.5E-47 349.5 24.1 485 2-520 42-888 (1080)
57 KOG2007|consensus 100.0 2E-40 4.2E-45 325.1 29.8 363 5-456 57-428 (586)
58 PRK01611 argS arginyl-tRNA syn 100.0 5E-41 1.1E-45 354.7 25.7 369 3-492 110-504 (507)
59 cd00672 CysRS_core catalytic c 100.0 1.4E-40 3E-45 309.5 18.6 192 3-359 20-213 (213)
60 TIGR00456 argS arginyl-tRNA sy 100.0 2E-35 4.4E-40 315.4 28.5 372 3-492 111-563 (566)
61 cd00674 LysRS_core_class_I cat 100.0 1.1E-35 2.4E-40 294.4 20.4 266 4-364 19-320 (353)
62 COG0018 ArgS Arginyl-tRNA synt 100.0 3.2E-34 6.8E-39 300.3 27.8 374 3-492 116-574 (577)
63 PRK12451 arginyl-tRNA syntheta 100.0 4.1E-33 8.9E-38 296.4 29.6 366 3-492 112-559 (562)
64 PLN02286 arginine-tRNA ligase 100.0 1.1E-31 2.4E-36 285.5 27.7 366 3-492 116-573 (576)
65 PRK00750 lysK lysyl-tRNA synth 100.0 1.8E-32 3.9E-37 287.1 15.1 262 6-360 25-321 (510)
66 TIGR00467 lysS_arch lysyl-tRNA 100.0 1.5E-29 3.2E-34 262.8 15.4 266 4-366 18-319 (515)
67 cd00671 ArgRS_core catalytic c 99.9 8.5E-27 1.9E-31 218.9 17.6 124 5-133 1-124 (212)
68 PF01921 tRNA-synt_1f: tRNA sy 99.9 6.6E-25 1.4E-29 214.6 7.2 270 5-366 23-329 (360)
69 COG1384 LysS Lysyl-tRNA synthe 99.9 2.8E-23 6.1E-28 208.0 15.3 268 6-366 20-324 (521)
70 PF00750 tRNA-synt_1d: tRNA sy 99.9 1.2E-21 2.5E-26 197.8 13.5 126 2-129 18-199 (354)
71 cd00802 class_I_aaRS_core cata 99.8 2.4E-19 5.3E-24 158.0 14.5 77 8-86 1-77 (143)
72 KOG4426|consensus 99.8 1.1E-16 2.5E-21 155.2 24.3 334 2-456 186-613 (656)
73 PRK04156 gltX glutamyl-tRNA sy 99.7 5.3E-17 1.1E-21 169.5 13.8 274 6-367 101-402 (567)
74 KOG1195|consensus 99.7 2E-15 4.3E-20 150.0 22.5 368 2-488 108-560 (567)
75 cd09287 GluRS_non_core catalyt 99.6 2E-14 4.3E-19 134.6 15.9 95 8-122 3-97 (240)
76 cd07957 Anticodon_Ia_Met Antic 99.6 1.6E-14 3.5E-19 125.0 12.9 127 368-502 2-129 (129)
77 PLN03233 putative glutamate-tR 99.6 1.9E-13 4.1E-18 141.3 19.0 277 6-368 11-311 (523)
78 cd07960 Anticodon_Ia_Ile_BEm A 99.5 1.6E-13 3.4E-18 126.0 16.2 150 358-515 1-157 (180)
79 cd07961 Anticodon_Ia_Ile_ABEc 99.5 2.9E-13 6.2E-18 124.6 14.8 152 358-515 1-160 (183)
80 PRK12558 glutamyl-tRNA synthet 99.5 2.3E-13 5.1E-18 139.0 15.1 95 7-123 3-97 (445)
81 PLN02907 glutamate-tRNA ligase 99.5 1.1E-12 2.3E-17 142.5 18.3 274 6-367 213-512 (722)
82 PRK05347 glutaminyl-tRNA synth 99.5 1.7E-12 3.6E-17 134.7 17.5 277 7-368 30-335 (554)
83 cd00807 GlnRS_core catalytic c 99.5 3.8E-12 8.2E-17 118.9 18.1 94 7-122 2-95 (238)
84 PTZ00402 glutamyl-tRNA synthet 99.5 4.3E-12 9.2E-17 132.7 20.4 275 6-368 52-353 (601)
85 PRK12410 glutamylglutaminyl-tR 99.5 1E-12 2.2E-17 133.7 14.7 90 11-122 4-93 (433)
86 cd00418 GlxRS_core catalytic c 99.4 3.2E-12 6.9E-17 119.4 16.2 90 7-118 2-92 (230)
87 TIGR00464 gltX_bact glutamyl-t 99.4 7E-13 1.5E-17 138.2 12.3 94 8-123 3-97 (470)
88 TIGR00463 gltX_arch glutamyl-t 99.4 1E-12 2.2E-17 137.4 13.3 97 6-124 93-189 (560)
89 PRK01406 gltX glutamyl-tRNA sy 99.4 1.1E-12 2.4E-17 136.7 13.2 95 7-123 5-107 (476)
90 cd07959 Anticodon_Ia_Leu_AEc A 99.4 1.8E-12 3.9E-17 110.1 11.7 111 371-502 5-117 (117)
91 COG0008 GlnS Glutamyl- and glu 99.4 2E-12 4.3E-17 133.0 13.0 95 7-123 10-105 (472)
92 PTZ00437 glutaminyl-tRNA synth 99.4 1.3E-11 2.7E-16 128.0 17.9 272 7-368 52-351 (574)
93 TIGR00440 glnS glutaminyl-tRNA 99.4 1.2E-11 2.6E-16 128.2 16.8 95 8-124 2-97 (522)
94 PLN02859 glutamine-tRNA ligase 99.4 2.6E-11 5.6E-16 130.0 19.0 95 7-123 265-359 (788)
95 cd07962 Anticodon_Ia_Val Antic 99.4 2.1E-11 4.5E-16 106.3 15.2 133 358-502 1-135 (135)
96 PLN02627 glutamyl-tRNA synthet 99.3 1.2E-11 2.6E-16 128.1 13.9 96 7-122 46-148 (535)
97 PRK14703 glutaminyl-tRNA synth 99.3 4.3E-11 9.2E-16 129.8 18.2 279 7-368 32-338 (771)
98 PRK14895 gltX glutamyl-tRNA sy 99.3 1.7E-11 3.8E-16 126.7 14.5 95 7-123 5-100 (513)
99 cd00808 GluRS_core catalytic c 99.3 9.7E-11 2.1E-15 110.5 18.0 90 7-118 2-100 (239)
100 PF08264 Anticodon_1: Anticodo 99.3 1.2E-11 2.5E-16 110.4 9.9 101 411-513 1-110 (153)
101 cd07958 Anticodon_Ia_Leu_BEm A 99.3 4.9E-11 1.1E-15 101.2 12.9 117 358-502 1-117 (117)
102 TIGR03838 queuosine_YadB gluta 99.3 9.7E-12 2.1E-16 119.5 8.7 95 7-123 1-96 (272)
103 PRK05710 glutamyl-Q tRNA(Asp) 99.3 3.2E-11 6.9E-16 117.3 11.6 96 6-123 5-101 (299)
104 KOG1149|consensus 99.1 3.1E-08 6.7E-13 97.5 24.8 94 9-122 36-136 (524)
105 PF00749 tRNA-synt_1c: tRNA sy 99.1 6E-10 1.3E-14 110.5 13.2 94 7-122 2-96 (314)
106 cd07956 Anticodon_Ia_Arg Antic 98.8 5.8E-08 1.3E-12 86.7 13.2 145 336-489 2-150 (156)
107 cd07375 Anticodon_Ia_like Anti 98.7 3.6E-07 7.9E-12 77.0 12.8 80 408-491 38-117 (117)
108 KOG1147|consensus 98.3 1.8E-06 3.8E-11 87.4 8.4 99 7-127 201-299 (712)
109 PRK13354 tyrosyl-tRNA syntheta 98.1 1.4E-05 3E-10 82.2 10.7 72 273-348 185-257 (410)
110 COG0180 TrpS Tryptophanyl-tRNA 98.1 1.7E-05 3.7E-10 77.3 10.3 89 4-106 4-96 (314)
111 PRK12285 tryptophanyl-tRNA syn 98.0 9.1E-05 2E-09 75.0 13.9 76 3-93 64-139 (368)
112 KOG1148|consensus 98.0 8.5E-05 1.8E-09 76.3 13.3 94 7-122 249-342 (764)
113 cd00395 Tyr_Trp_RS_core cataly 98.0 7.1E-05 1.5E-09 73.0 12.3 71 273-347 152-224 (273)
114 PRK05912 tyrosyl-tRNA syntheta 98.0 5.2E-05 1.1E-09 78.1 11.1 72 273-348 187-259 (408)
115 PRK12556 tryptophanyl-tRNA syn 97.9 0.00012 2.6E-09 73.2 12.1 67 14-93 11-77 (332)
116 PRK12284 tryptophanyl-tRNA syn 97.9 0.00016 3.4E-09 73.8 12.7 92 8-114 5-99 (431)
117 PF05746 DALR_1: DALR anticodo 97.9 0.00012 2.6E-09 62.1 10.2 111 375-489 1-113 (119)
118 TIGR00233 trpS tryptophanyl-tR 97.8 0.00013 2.8E-09 73.1 11.2 75 5-93 2-76 (328)
119 PRK08560 tyrosyl-tRNA syntheta 97.7 0.00024 5.3E-09 71.2 10.9 67 274-347 168-238 (329)
120 PLN02486 aminoacyl-tRNA ligase 97.7 0.00052 1.1E-08 69.7 13.1 77 3-93 71-148 (383)
121 cd00806 TrpRS_core catalytic c 97.6 0.00054 1.2E-08 67.1 11.5 67 14-93 7-73 (280)
122 COG0162 TyrS Tyrosyl-tRNA synt 97.6 0.00033 7.2E-09 71.1 9.3 53 274-329 180-234 (401)
123 PTZ00126 tyrosyl-tRNA syntheta 97.6 0.0005 1.1E-08 70.0 10.5 78 4-93 65-142 (383)
124 smart00836 DALR_1 DALR anticod 97.1 0.004 8.7E-08 52.9 9.3 80 408-489 35-116 (122)
125 cd07963 Anticodon_Ia_Cys Antic 96.7 0.0017 3.8E-08 57.8 4.3 97 420-526 33-143 (156)
126 TIGR00234 tyrS tyrosyl-tRNA sy 96.7 0.0075 1.6E-07 61.6 9.4 55 274-332 177-234 (377)
127 cd00805 TyrRS_core catalytic c 95.5 0.018 3.8E-07 56.2 4.9 70 274-348 151-221 (269)
128 PF00579 tRNA-synt_1b: tRNA sy 94.9 0.016 3.4E-07 57.4 2.6 67 274-347 149-222 (292)
129 PF09190 DALR_2: DALR domain; 93.6 0.21 4.5E-06 36.8 5.6 26 425-450 2-28 (63)
130 PRK12282 tryptophanyl-tRNA syn 91.9 0.11 2.4E-06 52.1 2.7 66 14-93 10-75 (333)
131 PRK12283 tryptophanyl-tRNA syn 91.6 0.12 2.6E-06 52.6 2.5 76 14-103 10-88 (398)
132 smart00840 DALR_2 This DALR do 90.4 0.72 1.6E-05 32.8 5.1 29 425-453 2-31 (56)
133 PRK00927 tryptophanyl-tRNA syn 90.3 0.2 4.4E-06 50.4 2.8 65 14-93 9-73 (333)
134 PRK12283 tryptophanyl-tRNA syn 88.4 1.8 4E-05 44.2 7.9 42 302-348 245-288 (398)
135 PLN02886 aminoacyl-tRNA ligase 86.3 2.8 6E-05 42.9 7.8 76 14-104 54-132 (389)
136 PTZ00348 tyrosyl-tRNA syntheta 84.0 1.1 2.3E-05 49.3 3.9 77 4-93 31-108 (682)
137 PRK01233 glyS glycyl-tRNA synt 82.2 12 0.00026 41.4 11.1 101 373-480 569-671 (682)
138 cd00805 TyrRS_core catalytic c 81.8 2.1 4.6E-05 41.7 4.8 71 14-91 8-81 (269)
139 TIGR00211 glyS glycyl-tRNA syn 80.1 14 0.00031 40.9 10.8 101 373-480 579-681 (691)
140 PRK00927 tryptophanyl-tRNA syn 78.7 7 0.00015 39.4 7.4 69 274-348 138-220 (333)
141 COG0751 GlyS Glycyl-tRNA synth 78.3 18 0.0004 39.5 10.6 101 374-481 579-681 (691)
142 KOG2144|consensus 76.9 1.5 3.3E-05 42.0 1.9 66 14-93 42-112 (360)
143 PRK12282 tryptophanyl-tRNA syn 76.6 16 0.00035 36.8 9.3 69 273-347 141-219 (333)
144 PF00579 tRNA-synt_1b: tRNA sy 76.5 2.7 5.8E-05 41.5 3.7 42 3-51 3-44 (292)
145 COG1656 Uncharacterized conser 74.5 4.4 9.5E-05 35.7 4.0 86 33-137 18-107 (165)
146 PLN02886 aminoacyl-tRNA ligase 70.2 4.7 0.0001 41.2 3.7 18 273-291 183-200 (389)
147 PTZ00348 tyrosyl-tRNA syntheta 68.4 14 0.0003 40.9 7.0 57 273-332 174-236 (682)
148 PRK14908 glycyl-tRNA synthetas 67.6 35 0.00077 39.3 10.1 97 372-479 893-990 (1000)
149 KOG2713|consensus 61.3 45 0.00098 32.3 8.0 88 14-113 21-111 (347)
150 cd07955 Anticodon_Ia_Cys_like 55.8 24 0.00053 27.3 4.5 28 421-448 29-57 (81)
151 TIGR00373 conserved hypothetic 50.7 26 0.00057 31.0 4.5 10 170-179 130-139 (158)
152 KOG2623|consensus 49.2 15 0.00033 37.0 2.9 36 9-51 68-103 (467)
153 KOG2145|consensus 48.7 20 0.00043 34.7 3.5 45 3-54 83-128 (397)
154 COG5270 PUA domain (predicted 45.7 17 0.00036 32.7 2.4 24 115-138 2-25 (202)
155 PF01927 Mut7-C: Mut7-C RNAse 43.7 28 0.00061 30.4 3.5 32 33-68 12-43 (147)
156 PF14671 DSPn: Dual specificit 38.4 45 0.00097 28.9 3.9 58 14-75 39-105 (141)
157 PF04405 ScdA_N: Domain of Unk 36.9 31 0.00066 24.7 2.2 46 28-77 4-52 (56)
158 cd06259 YdcF-like YdcF-like. Y 35.8 2.8E+02 0.0061 23.7 11.3 103 6-116 3-119 (150)
159 KOG2623|consensus 31.8 95 0.0021 31.6 5.4 56 273-332 226-286 (467)
160 PF02662 FlpD: Methyl-viologen 31.8 3.1E+02 0.0068 23.1 8.1 48 71-118 72-124 (124)
161 cd02156 nt_trans nucleotidyl t 30.6 45 0.00097 27.0 2.6 10 17-26 9-18 (105)
162 COG3286 Uncharacterized protei 26.4 98 0.0021 28.2 4.0 88 28-125 89-177 (204)
163 COG1998 RPS31 Ribosomal protei 24.4 36 0.00079 23.4 0.8 16 127-142 19-36 (51)
164 COG2185 Sbm Methylmalonyl-CoA 22.4 2.3E+02 0.005 24.6 5.5 69 22-119 24-92 (143)
165 COG4720 Predicted membrane pro 21.5 76 0.0017 28.4 2.4 20 7-26 25-44 (177)
166 COG1675 TFA1 Transcription ini 21.1 1.4E+02 0.0029 27.1 3.9 11 170-180 134-144 (176)
167 PF12674 Zn_ribbon_2: Putative 20.3 1.6E+02 0.0035 22.8 3.7 75 129-228 2-80 (81)
168 COG1592 Rubrerythrin [Energy p 20.1 1.5E+02 0.0033 26.5 4.0 29 100-136 115-143 (166)
No 1
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-103 Score=812.92 Aligned_cols=493 Identities=37% Similarity=0.613 Sum_probs=463.7
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
.++++||+|+|||||+|||||+++++.+|+++||+|++ |++|.|++|+|+||+||+.+|+++|++|+++|+++++.|+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~--G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~ 81 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLR--GYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK 81 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhc--CCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----hhhhhhhhcc
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN----EEESFLLEHQ 158 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~----~~~~~~~~~~ 158 (528)
++++.|+|++|.|+||+++.|.+.++++|.+|+++|+||.++..++||+.|++|++++++++.|+. ...+..||.|
T Consensus 82 ~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~C 161 (558)
T COG0143 82 ELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENC 161 (558)
T ss_pred HHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999974 3456789999
Q ss_pred CC-CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCc
Q psy4049 159 IR-PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARV 237 (528)
Q Consensus 159 ~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~ 237 (528)
+. +++.....|+|..||.+++++.+++|||+|+++++.+++|+++.+..+.|...++.+.+|++.|++||+|||++ +
T Consensus 162 g~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~--~ 239 (558)
T COG0143 162 GRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTD--L 239 (558)
T ss_pred cCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCC--C
Confidence 87 46766678999999999999999999999999999999999998878899999999999999999999999964 7
Q ss_pred ccccccCCCCCCeEEEeccchhhhhhhhcCC----C---CCC-CCcc----ceEeeecccchhhhHHHHHHhhcCCCCCc
Q psy4049 238 HWGIPVPDDDTQTIYVWLDALMNYLTVSGYP----D---FHT-WPPH----IQILGKDILKFHGIYWPAFLIAAGLEPPK 305 (528)
Q Consensus 238 ~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~----~---~~~-~~~d----i~~~G~D~~~~h~~~~~a~~~~~~~~~~~ 305 (528)
.||+|+|+++++++||||||+++|++++|+. . |.. |+.+ +|++||||++||+++|||++++.|.+.|.
T Consensus 240 ~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~ 319 (558)
T COG0143 240 DWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPT 319 (558)
T ss_pred CCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999873 2 777 9887 99999999999999999999999999999
Q ss_pred EEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4049 306 SFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK 385 (528)
Q Consensus 306 ~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~ 385 (528)
++.+|||++++|+|||||+||+|++.++++.+|+|++||||++..|..+|.+|+++.+.+..|+++.+.++|+++|+.++
T Consensus 320 ~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~f 399 (558)
T COG0143 320 RIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGF 399 (558)
T ss_pred EEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc-CCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC
Q psy4049 386 SI-NPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464 (528)
Q Consensus 386 ~~-~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~ 464 (528)
.. +.++.+|.... . .. +.|+.++..+......+.++|+++++++|+..+++++...|+|++..+||.+.+++
T Consensus 400 i~k~~~g~vp~~~~-~-----~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~ 472 (558)
T COG0143 400 INKYFDGVVPAAGA-P-----DL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKED 472 (558)
T ss_pred HHhccCCcCCcccc-c-----cc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccC
Confidence 64 45566655321 0 12 67889999999999999999999999999999999999999999999999998885
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC
Q psy4049 465 KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT 506 (528)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~ 506 (528)
.++++.++++.+.++++.++.+|+||||+++++||+.|+.+.
T Consensus 473 ~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~ 514 (558)
T COG0143 473 KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEE 514 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCcc
Confidence 578889999999999999999999999999999999999864
No 2
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.2e-97 Score=807.96 Aligned_cols=490 Identities=22% Similarity=0.392 Sum_probs=444.5
Q ss_pred CCcEEEECCCCCCCCCChhhHHHH-HHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYT-ALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~-~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
++++|||+|+|||||+|||||+++ ++.+|+++||+|++ |++|+|++|+|+||+||+.+|++.|++|+++|+++.+.|
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~--G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~ 93 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLR--GYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIH 93 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhC--CCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 468999999999999999999997 57799999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchh------hhhhh
Q psy4049 82 KLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEE------ESFLL 155 (528)
Q Consensus 82 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~------~~~~~ 155 (528)
+++++++||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|++|++++++.+.||... .+..|
T Consensus 94 ~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~C 173 (801)
T PLN02610 94 KEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQC 173 (801)
T ss_pred HHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999998733 45689
Q ss_pred hccCC-CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccc---hhhHHHHHHHHhccCCCcccc
Q psy4049 156 EHQIR-PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKP---KKFYNQLRNMCSEIENDISVS 231 (528)
Q Consensus 156 ~~~~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~l~~~~~dw~is 231 (528)
|.|+. +++.....|+|..||.+++++.+++|||+|++|++.+.+|++... +.| .+..+.+.+||+.|++|||||
T Consensus 174 e~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~Is 251 (801)
T PLN02610 174 EKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCIT 251 (801)
T ss_pred hhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCccee
Confidence 99986 577777888999999999999999999999999999999998653 333 344456669999999999999
Q ss_pred ccCCCcccccccCCC--CCCeEEEeccchhhhhhhh-cCCC-CCC-CCc--c---ceEeeecccchhhhHHHHHHhhcCC
Q psy4049 232 RPKARVHWGIPVPDD--DTQTIYVWLDALMNYLTVS-GYPD-FHT-WPP--H---IQILGKDILKFHGIYWPAFLIAAGL 301 (528)
Q Consensus 232 R~~~~~~WG~~ip~~--~~~~~~~wfds~~~~~~~~-~~~~-~~~-~~~--d---i~~~G~D~~~~h~~~~~a~~~~~~~ 301 (528)
|+ +.||||+|.+ +++++||||||+++|++++ +|.. |+. |+. + +|++|+||++||+++||++++++|.
T Consensus 252 R~---~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~ 328 (801)
T PLN02610 252 RD---LKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 328 (801)
T ss_pred ee---cCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCC
Confidence 97 6999999976 7999999999999999997 6644 666 865 5 8999999999999999999999996
Q ss_pred C--CCcEEEEeeeeeeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Q psy4049 302 E--PPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNL 378 (528)
Q Consensus 302 ~--~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~ 378 (528)
+ +|+++.+|||++++|+|||||+||+|+|.++++. ||+|++||||++.++..+|.+|+++.+.+..|+++.+.++|+
T Consensus 329 ~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNl 408 (801)
T PLN02610 329 NWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNF 408 (801)
T ss_pred CcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 5 8899999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-----CCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhh
Q psy4049 379 LNRCLSKSI-----NPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFID 453 (528)
Q Consensus 379 ~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~ 453 (528)
++|+.++.. ..++.+|..... .....|.++++.+.++.+.+.++|++|++++|++.++++++.+|+|++
T Consensus 409 v~R~~~~i~~~~~k~~~g~vp~~~~~------~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe 482 (801)
T PLN02610 409 INRVLSFIAKPPGAGYGSVIPDAPGA------ESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQ 482 (801)
T ss_pred HHHHHHHHHhhhhhccCCcCCCcccc------ccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999998765 244555431110 123568899999999999999999999999999999999999999999
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC
Q psy4049 454 TTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT 506 (528)
Q Consensus 454 ~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~ 506 (528)
..+||.+.+++ .+++.++++++.++++.+++||+||||+++++||+.|+.+.
T Consensus 483 ~~kPW~L~k~d-~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~ 534 (801)
T PLN02610 483 ESQFWKLYKED-KPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPP 534 (801)
T ss_pred hcCchhhhCCC-HHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCc
Confidence 99999987654 44677889999999999999999999999999999999754
No 3
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-95 Score=792.17 Aligned_cols=474 Identities=38% Similarity=0.684 Sum_probs=436.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++|||+|+|||||++||||+++++.+|+++||+|++ |++|.+++|+|+||++|+.+|+++|++|+++++++.+.|+
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~--G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk 80 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQ--GYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFK 80 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhc--CCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|++|++++++...
T Consensus 81 ~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~----------------- 143 (648)
T PRK12267 81 ELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDG----------------- 143 (648)
T ss_pred HHHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999885541
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHH-HHHhccCCCccccccCCCccccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLR-NMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
++|++||.+++++.++||||+|+++++.+.+|++..+..+.|...++.+. +||++|++||||||++ ++||+
T Consensus 144 ------~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~--~~WGi 215 (648)
T PRK12267 144 ------GKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTS--FDWGI 215 (648)
T ss_pred ------CcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCC--CCcce
Confidence 24899999999999999999999999999999987765678999998888 9999999999999986 68999
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeeee
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTV 315 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~~ 315 (528)
|+|.++++|+||||||+++|++++|++. |+. ||.++|++|+||++||+++||++++++|.++|+++.+|||++.
T Consensus 216 pvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~ 295 (648)
T PRK12267 216 PVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLM 295 (648)
T ss_pred ECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEE
Confidence 9999999999999999999999999863 667 9999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCC
Q psy4049 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSIN-PDNVNP 394 (528)
Q Consensus 316 ~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~-~~~~~~ 394 (528)
+|+|||||+||+|+|.|+++.||+|++|||+++.+++.+|.+|+++.+.+..|+++.+.++|+++|+..+..+ ..+..|
T Consensus 296 eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p 375 (648)
T PRK12267 296 KDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIP 375 (648)
T ss_pred CCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCC
Confidence 9999999999999999999999999999999988888999999999999988999999999999999876533 233333
Q ss_pred CcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC-cHHHHHHHH
Q psy4049 395 LVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN-KIEELNLVL 473 (528)
Q Consensus 395 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~-~~~~~~~~~ 473 (528)
.. +.....|++++.+++.+.+++.++|++|++++|++.+++|++.+|+|++..+||.+.+++ .++++.+++
T Consensus 376 ~~--------~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l 447 (648)
T PRK12267 376 AP--------GNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVM 447 (648)
T ss_pred CC--------CCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHH
Confidence 21 113467999999999999999999999999999999999999999999999999876542 356678889
Q ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHcCCCCccccc
Q psy4049 474 GVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLW 511 (528)
Q Consensus 474 ~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w 511 (528)
+++.++++.++++|+||||+++++||+.|+.+.....|
T Consensus 448 ~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~~~~ 485 (648)
T PRK12267 448 YHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEELTSW 485 (648)
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccccch
Confidence 99999999999999999999999999999985433444
No 4
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.1e-93 Score=757.45 Aligned_cols=469 Identities=36% Similarity=0.637 Sum_probs=427.9
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+++++|++|||||||.|||||+++++++|+++||+|++ |++|.+++|+|+||+||+.+|++.|++|.++|+++.+.++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~--G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~ 145 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLL--GKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYR 145 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhc--CCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+.+++|||++|.|++|+++.|.+.++++|.+|+++|+||+++++++||+.|++|+.+.++...
T Consensus 146 ~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~----------------- 208 (616)
T PLN02224 146 TLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLEN----------------- 208 (616)
T ss_pred HHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCC-----------------
Confidence 999999999999999999999999999999999999999999999999999999988776532
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
+.|..||.+++++.+++|||+|++|++.+.+|+......+.|+..++.+.+||++|++||||||++ ..||||
T Consensus 209 ------~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~--~~WGIp 280 (616)
T PLN02224 209 ------NCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRAL--VDWGIP 280 (616)
T ss_pred ------CCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCC--CCCceE
Confidence 138889999999999999999999999999999877656789999899999999999999999975 479999
Q ss_pred cCCCCCCeEEEeccchhhhhhhhcCCC--------CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee
Q psy4049 243 VPDDDTQTIYVWLDALMNYLTVSGYPD--------FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW 313 (528)
Q Consensus 243 ip~~~~~~~~~wfds~~~~~~~~~~~~--------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~ 313 (528)
+|.++++|+||||||+++|++++++.. +.. ||.++|++|+|+++||+++||++++++|+++|+++++||++
T Consensus 281 vP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l 360 (616)
T PLN02224 281 VPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL 360 (616)
T ss_pred CCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEEEecccE
Confidence 999999999999999999999988632 233 89999999999999999999999999999999999999999
Q ss_pred eeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCC
Q psy4049 314 TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSIN-PDNV 392 (528)
Q Consensus 314 ~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~-~~~~ 392 (528)
+++|+|||||+||+|+|.|+++.||+|++||||++.+++.+|.+|+++.+.+..++++.+.++|+++|+..+..+ .++.
T Consensus 361 ~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~ 440 (616)
T PLN02224 361 TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCEST 440 (616)
T ss_pred ecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999888999999999998888999999999999999876533 2222
Q ss_pred CCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC--cHHHHH
Q psy4049 393 NPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN--KIEELN 470 (528)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~--~~~~~~ 470 (528)
.+... .....|.++++.++++..++.++|+++++++|+..++++++.+|+|++..+||.+.+++ ..+.+.
T Consensus 441 ~~~~~--------~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~ 512 (616)
T PLN02224 441 LVEDS--------TVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAA 512 (616)
T ss_pred CCCcc--------ccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHH
Confidence 22110 01345789999999999999999999999999999999999999999999999876553 234567
Q ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC
Q psy4049 471 LVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT 506 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~ 506 (528)
+++.++.++++.+++||+||||+++++||+.|+.+.
T Consensus 513 ~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~ 548 (616)
T PLN02224 513 KDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSE 548 (616)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCc
Confidence 788889999999999999999999999999999753
No 5
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-93 Score=774.85 Aligned_cols=482 Identities=25% Similarity=0.409 Sum_probs=439.6
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
++++||+|+|||||.+||||+++++.+|+++||+|++ |++|++++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~--G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 79 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMR--GHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKR 79 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhc--CCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----hhhhhhhhccC
Q psy4049 84 MFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN----EEESFLLEHQI 159 (528)
Q Consensus 84 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~----~~~~~~~~~~~ 159 (528)
+++.|||++|.|++|+++.|.+.++++|.+|+++|+||+++++++||+.|++|++++++.+.||. +..+..||.|+
T Consensus 80 ~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg 159 (673)
T PRK00133 80 DFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCG 159 (673)
T ss_pred HHHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999874 23456899998
Q ss_pred CC-CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcc
Q psy4049 160 RP-DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH 238 (528)
Q Consensus 160 ~~-~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~ 238 (528)
.. ++.....++|..||.+++++.++||||+++++++.+.+++.... .| |...++.+.+||+++++||||||+ ++
T Consensus 160 ~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~l~~~l~d~~ISR~---~~ 234 (673)
T PRK00133 160 ATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-EL-QPNVANKMKEWLEEGLQDWDISRD---AP 234 (673)
T ss_pred ccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHhCCCcccceeee---CC
Confidence 74 45555678899999999999999999999999999999997544 35 888999999999999999999998 58
Q ss_pred c-ccccCCCCCCeEEEeccchhhhhhhh-cCCC------CCC-CC-c----cceEeeecccchhhhHHHHHHhhcCCCCC
Q psy4049 239 W-GIPVPDDDTQTIYVWLDALMNYLTVS-GYPD------FHT-WP-P----HIQILGKDILKFHGIYWPAFLIAAGLEPP 304 (528)
Q Consensus 239 W-G~~ip~~~~~~~~~wfds~~~~~~~~-~~~~------~~~-~~-~----di~~~G~D~~~~h~~~~~a~~~~~~~~~~ 304 (528)
| |+|+|+++++++|||||++++|++.+ ++++ |+. |+ . .+|++|+|+++||+++||+++++.|+++|
T Consensus 235 W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP 314 (673)
T PRK00133 235 YFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLP 314 (673)
T ss_pred ccceECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCC
Confidence 9 99999999999999999999999988 3421 556 73 3 39999999999999999999999999999
Q ss_pred cEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCC-CCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 305 KSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH-SDSNYSETKAKNILNAELANTLGNLLNRCL 383 (528)
Q Consensus 305 ~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~-~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~ 383 (528)
+++++|||++.+|+|||||+||+|+|.|++++||+|++|||+++.++.. +|.+|+++.+....++++.++++|+++|+.
T Consensus 315 ~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~ 394 (673)
T PRK00133 315 TNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTA 394 (673)
T ss_pred CEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988878 899999999988778889999999999998
Q ss_pred hcccC-CCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccc
Q psy4049 384 SKSIN-PDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRK 462 (528)
Q Consensus 384 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~ 462 (528)
++..+ .++..+ ....|++++.+++++...+.++|++|+++.|++.+++|+..+|+|++..+||.+.+
T Consensus 395 ~~~~k~~~~~~~------------~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~ 462 (673)
T PRK00133 395 GFINKRFDGKLP------------DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAK 462 (673)
T ss_pred HHHHHhcCCCCC------------CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhc
Confidence 76532 122221 13458999999999999999999999999999999999999999999999998766
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC
Q psy4049 463 ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP 505 (528)
Q Consensus 463 ~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~ 505 (528)
++ .+++.++++++.++++.++++|+||||+++|+||+.|+.+
T Consensus 463 ~~-~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 463 QD-GERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLE 504 (673)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCC
Confidence 53 4557788899999999999999999999999999999985
No 6
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=6.4e-93 Score=758.36 Aligned_cols=486 Identities=33% Similarity=0.552 Sum_probs=443.0
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
++||+|||||||.+||||+++++.+|+++||+|++ |++|.+++|+|+||++|+.+|+++|++|+++++.+.+.|++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~--G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 78 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLR--GYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDW 78 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhc--CCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----hhhhhhhhccCCC
Q psy4049 86 KTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN----EEESFLLEHQIRP 161 (528)
Q Consensus 86 ~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~----~~~~~~~~~~~~~ 161 (528)
++|||++|.+++|+++.|.+.++++|.+|.++|++|++++.++||+.|++++++.++.+.|+. +..+..||.|+..
T Consensus 79 ~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~ 158 (530)
T TIGR00398 79 KWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRH 158 (530)
T ss_pred HHhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999974 3457799999875
Q ss_pred -CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCC-CcccchhhHHHHHHHHhccCCCccccccCCCcc-
Q psy4049 162 -DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE-DVVKPKKFYNQLRNMCSEIENDISVSRPKARVH- 238 (528)
Q Consensus 162 -~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~- 238 (528)
++....+|+|.+||++++++.++||||+++++++.+.+++++.+ ..+.|+..++.+.+||+++++||||||++ .
T Consensus 159 ~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~---~~ 235 (530)
T TIGR00398 159 LEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDL---VY 235 (530)
T ss_pred CCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcC---CC
Confidence 44556788999999999999999999999999999999998643 23568888889999999999999999996 6
Q ss_pred cccccCCCCCCeEEEeccchhhhhhhhcCCC-----CCC-CCcc-----ceEeeecccchhhhHHHHHHhhcCCCCCcEE
Q psy4049 239 WGIPVPDDDTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPH-----IQILGKDILKFHGIYWPAFLIAAGLEPPKSF 307 (528)
Q Consensus 239 WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~d-----i~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~ 307 (528)
||+|+|.++++++||||||+++|++.++++. |+. ||.+ +|++|+||++||+++|+++++++|.++|+++
T Consensus 236 WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~ 315 (530)
T TIGR00398 236 WGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV 315 (530)
T ss_pred CCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE
Confidence 9999999999999999999999999877642 556 8988 9999999999999999999999999999999
Q ss_pred EEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4049 308 LVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSI 387 (528)
Q Consensus 308 ~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~ 387 (528)
++|||++.+|+|||||+||+|+|.|++++||+|++|||+++.++..+|++|+++.+.+..|+++.++++|+++|+.++..
T Consensus 316 ~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~ 395 (530)
T TIGR00398 316 FSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIK 395 (530)
T ss_pred EeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887899999999999988788899999999999987654
Q ss_pred CC-CCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcH
Q psy4049 388 NP-DNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKI 466 (528)
Q Consensus 388 ~~-~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~ 466 (528)
+. ++..+.. ......|++++.+++++...+.+++++|+++.+++.+++|+..+|+|++..+||.+.+++ .
T Consensus 396 ~~~~~~~~~~--------~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~-~ 466 (530)
T TIGR00398 396 KYFNGVLPSE--------DITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS-P 466 (530)
T ss_pred HhcCCcCCCC--------cccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh-H
Confidence 32 2222210 012467999999999999999999999999999999999999999999999999776542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC
Q psy4049 467 EELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT 506 (528)
Q Consensus 467 ~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~ 506 (528)
++.+++.++.+++++++++|+||||+++|+||+.|+.+.
T Consensus 467 -~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~ 505 (530)
T TIGR00398 467 -RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFEL 505 (530)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCh
Confidence 567888999999999999999999999999999999753
No 7
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-91 Score=750.02 Aligned_cols=495 Identities=28% Similarity=0.439 Sum_probs=443.5
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHH-HHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTA-LLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~-v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.++++||+|||||||.|||||++++ +.+|+++||+|++ |++|.+++|+||||++|+.+|+++|++++++++++.+.|
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~--G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 79 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK--GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEH 79 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhc--CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998 9999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCch----hhhhhhhc
Q psy4049 82 KLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE----EESFLLEH 157 (528)
Q Consensus 82 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~----~~~~~~~~ 157 (528)
++++++|||++|.|++|++++|.+.++++|.+|+++|++|+++++++||+.|+++++++++.+.|+.. ..+..||.
T Consensus 80 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 80 KEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN 159 (556)
T ss_pred HHHHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998752 35778999
Q ss_pred cCC-CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCC
Q psy4049 158 QIR-PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKAR 236 (528)
Q Consensus 158 ~~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~ 236 (528)
|+. +++.....|+|.+||++++++.++|||++++++++.+.++++.. .+.|+..++.+.+||+++++|||||||+
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~--~~~p~~~~~~~~~~l~~~l~Dw~ISR~~-- 235 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS--GDWPPNVLNFTLNWLKEGLKPRAITRDL-- 235 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHhCCCCCcCceeeC--
Confidence 986 45555667899999999999999999999999999999999853 5899999999999999779999999997
Q ss_pred cccccccC--CCCCCeEEEeccchhhhhhhhcC-------CC-CCC-C----CccceEeeecccchhhhHHHHHHhhcC-
Q psy4049 237 VHWGIPVP--DDDTQTIYVWLDALMNYLTVSGY-------PD-FHT-W----PPHIQILGKDILKFHGIYWPAFLIAAG- 300 (528)
Q Consensus 237 ~~WG~~ip--~~~~~~~~~wfds~~~~~~~~~~-------~~-~~~-~----~~di~~~G~D~~~~h~~~~~a~~~~~~- 300 (528)
.||+||| .++++++|||||++++|++.++. ++ |.. | |.++++.|+|+++||..+|++++.+.+
T Consensus 236 -~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~ 314 (556)
T PRK12268 236 -DWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGE 314 (556)
T ss_pred -CCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCC
Confidence 7999999 78899999999999999876432 11 444 6 667999999999999999999999998
Q ss_pred -CCCCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Q psy4049 301 -LEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLL 379 (528)
Q Consensus 301 -~~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~ 379 (528)
.++|.++++|||++.+|+|||||+||+|+|.|++++||+|++|||+++.++..+|++|+++.+....++++.++++|++
T Consensus 315 ~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 315 PLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 7888999999999999999999999999999999999999999999988887899999999998777778889999999
Q ss_pred HHHHhcccCC-CCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcc
Q psy4049 380 NRCLSKSINP-DNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPW 458 (528)
Q Consensus 380 ~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 458 (528)
+|+.++..+. .+..+. +.....|++++++++.+.+.+.++|++|+++.|++.+++|++.+|+|++..++|
T Consensus 395 ~r~~~~~~~~~~~~~~~---------~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw 465 (556)
T PRK12268 395 NRVLSFIEKYFGGIVPP---------GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPW 465 (556)
T ss_pred HHHHHHHHHhcCCcCCC---------CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 9987765321 111110 113567999999999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC-Ccccccccc
Q psy4049 459 TLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP-TNERLWDNM 514 (528)
Q Consensus 459 ~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~-~~~~~w~~~ 514 (528)
.+.+++ .+.++.+++++..+++.++++|+||||+++|+||+.|+.. .....|+..
T Consensus 466 ~~~~~~-~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~~ 521 (556)
T PRK12268 466 KLAKTD-RERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESL 521 (556)
T ss_pred hhhcCC-HHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhhh
Confidence 766543 5566778888889999999999999999999999999872 334567764
No 8
>KOG0436|consensus
Probab=100.00 E-value=4.1e-91 Score=665.26 Aligned_cols=483 Identities=45% Similarity=0.836 Sum_probs=440.4
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
+++++|+|..|+|..+||||+++.+++|+++|+.|++ |..|++.+|+|+||++|..+|...|.+|.++|++..+.|.+
T Consensus 39 ~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lk--g~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q 116 (578)
T KOG0436|consen 39 ETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLK--GKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ 116 (578)
T ss_pred ceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhc--CCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHH
Confidence 5889999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCC
Q psy4049 84 MFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDE 163 (528)
Q Consensus 84 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (528)
.++.+||.++.|+||++|.|...|++++..+.++|+||++.+.+|||.+|++|+++..+... +++
T Consensus 117 L~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~---------------p~~ 181 (578)
T KOG0436|consen 117 LWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN---------------PCP 181 (578)
T ss_pred HHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC---------------CCC
Confidence 99999999999999999999999999999999999999999999999999999999988765 233
Q ss_pred CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccccc
Q psy4049 164 KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPV 243 (528)
Q Consensus 164 ~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~i 243 (528)
.| .++.+++|+|+.|+.+++|||+|++|++.+.++++.++.++.|+...+.+.+||+.|++|.+|||+.+.+.||||+
T Consensus 182 ~g--k~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPv 259 (578)
T KOG0436|consen 182 PG--KVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPV 259 (578)
T ss_pred CC--ceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCC
Confidence 44 3467789999999999999999999999999999999999999999999999999999999999976668999999
Q ss_pred CCCCCCeEEEeccchhhhhhhhcCCC--------CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeee
Q psy4049 244 PDDDTQTIYVWLDALMNYLTVSGYPD--------FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWT 314 (528)
Q Consensus 244 p~~~~~~~~~wfds~~~~~~~~~~~~--------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~ 314 (528)
|+++.+++||||||+++|++.+|+|. +.- ||+.+|+.|||+++||+++|||++++.|+++|+.+++|||++
T Consensus 260 P~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vHghwt 339 (578)
T KOG0436|consen 260 PGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWT 339 (578)
T ss_pred CCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeee
Confidence 99999999999999999999999984 344 999999999999999999999999999999999999999999
Q ss_pred eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q psy4049 315 VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNP 394 (528)
Q Consensus 315 ~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~ 394 (528)
.+|.|||||+||+++|.+++++||+|++||||++.+..+.|.+|+++.+.+..|..+++.++|+++|+.+.-.+.....+
T Consensus 340 ~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~ 419 (578)
T KOG0436|consen 340 KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCES 419 (578)
T ss_pred ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhcccc
Confidence 99999999999999999999999999999999998888999999999999999999999999999999984332211000
Q ss_pred CcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc--HHHHHHH
Q psy4049 395 LVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK--IEELNLV 472 (528)
Q Consensus 395 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~--~~~~~~~ 472 (528)
.. ..+ .......+..+.+.+.++++.+.+.++.|.+.++++.+.+.++..|.|++..+||.+..+.. .+.+...
T Consensus 420 ~l---~~~-s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~ 495 (578)
T KOG0436|consen 420 TL---VVD-SPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKV 495 (578)
T ss_pred cc---ccC-CcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccCccHHHHHHH
Confidence 00 000 00013456678899999999999999999999999999999999999999999999877643 5667778
Q ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCccc
Q psy4049 473 LGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER 509 (528)
Q Consensus 473 ~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~ 509 (528)
+....+++++++++++|++|.++.+++++|+.+.+.+
T Consensus 496 ~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 496 LHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQR 532 (578)
T ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhc
Confidence 8888899999999999999999999999999977543
No 9
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.6e-89 Score=726.13 Aligned_cols=473 Identities=41% Similarity=0.735 Sum_probs=430.5
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
++++|++|||||||.+||||+|+++.+|+++||+|++ |++|.+++|+||||++|+.+|+++|+++.++|+++.++|++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~--G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 78 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLR--GYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKR 78 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhc--CCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCC
Q psy4049 84 MFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDE 163 (528)
Q Consensus 84 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (528)
++++|||++|.|++|+++.|.+.++++|.+|+++|++|++++.++||+.|++++++.++...
T Consensus 79 ~l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~------------------ 140 (511)
T PRK11893 79 LWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIED------------------ 140 (511)
T ss_pred HHHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999886653
Q ss_pred CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccc-cCCCcccccc
Q psy4049 164 KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR-PKARVHWGIP 242 (528)
Q Consensus 164 ~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR-~~~~~~WG~~ 242 (528)
+ |+|++||++++++.++|||++++.+++.+.++++.....+.|+..++.+.+|++++++|||||| + .+||+|
T Consensus 141 -~---p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~---~~WGip 213 (511)
T PRK11893 141 -G---YRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTN---FDWGIP 213 (511)
T ss_pred -C---CCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCC---CCCCcc
Confidence 1 6799999999999999999999999999999998755456799999999999998899999999 6 489999
Q ss_pred cCCCCCCeEEEeccchhhhhhhhcCCC--------CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee
Q psy4049 243 VPDDDTQTIYVWLDALMNYLTVSGYPD--------FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW 313 (528)
Q Consensus 243 ip~~~~~~~~~wfds~~~~~~~~~~~~--------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~ 313 (528)
+|.++++++||||||+++|++..|+|. +.. ||.|+|++|+||++||+++|++++.+++.++|+++++|||+
T Consensus 214 iP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v 293 (511)
T PRK11893 214 VPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFL 293 (511)
T ss_pred CCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccE
Confidence 999999999999999999999988753 556 89999999999999999999999999888888999999999
Q ss_pred eeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q psy4049 314 TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINP-DNV 392 (528)
Q Consensus 314 ~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~-~~~ 392 (528)
+.+|+|||||+||+|++.|++++||+|++||++++.++++++++|+++.+.+..++++.++++|+++|+.++..+. .+.
T Consensus 294 ~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~ 373 (511)
T PRK11893 294 TLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGK 373 (511)
T ss_pred EECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999888889999999999988888889999999999998765432 222
Q ss_pred CCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHH
Q psy4049 393 NPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLV 472 (528)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~ 472 (528)
.|.. ......|++++..+.++.+.+.++|++|+++.|++.++++++.+|+|++..+||.+..++ ...++++
T Consensus 374 ~~~~--------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~~-~~~~~~~ 444 (511)
T PRK11893 374 VPEP--------GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKTD-PERLATV 444 (511)
T ss_pred CCCC--------cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcCC-HHHHHHH
Confidence 2211 012466889999999999999999999999999999999999999999999999765543 4567889
Q ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCcc-cccc
Q psy4049 473 LGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNE-RLWD 512 (528)
Q Consensus 473 ~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~-~~w~ 512 (528)
+.++.++++.++.+++||||+++|+||+.|+.+... .+|+
T Consensus 445 l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~ 485 (511)
T PRK11893 445 LYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFA 485 (511)
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchh
Confidence 999999999999999999999999999999975443 3454
No 10
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-85 Score=692.38 Aligned_cols=489 Identities=18% Similarity=0.300 Sum_probs=414.8
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH----cCCCH---------
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK----HKLET--------- 70 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~----~g~~~--------- 70 (528)
++|.|..||||+||.|||||+.+.++.|+++||.||+ ||+|++++|+|++|.+++...++ +|++.
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~--G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl 110 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMR--GYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFL 110 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcC--CCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHH
Confidence 5699999999999999999999999999999999999 99999999999999988877553 25543
Q ss_pred ---HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccC
Q psy4049 71 ---IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPD 145 (528)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~ 145 (528)
.+|.+++...|++++++||++.| ..+-|+++.+.+.|+++|.+|+++|+||+++++++|||.|+|.+++.+|+.+
T Consensus 111 ~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~ 190 (877)
T COG0525 111 KKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYK 190 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccc
Confidence 46889999999999999999876 4444999999999999999999999999999999999999999999999987
Q ss_pred CCch-------------------------------------hhhh-----------hhhc--------------------
Q psy4049 146 EKNE-------------------------------------EESF-----------LLEH-------------------- 157 (528)
Q Consensus 146 ~~~~-------------------------------------~~~~-----------~~~~-------------------- 157 (528)
+..+ ++.| ++++
T Consensus 191 e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~Vk 270 (877)
T COG0525 191 EVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVK 270 (877)
T ss_pred eeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccCCcCCCceEE
Confidence 4321 1111 0000
Q ss_pred --------------------------cCCCC---------------------------------CCCCCcccccCCCCCc
Q psy4049 158 --------------------------QIRPD---------------------------------EKNEGQYVSIESNQPV 178 (528)
Q Consensus 158 --------------------------~~~~~---------------------------------~~g~~~~~~~~~g~~~ 178 (528)
.+.++ +..+.+++|++||.++
T Consensus 271 ItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~I 350 (877)
T COG0525 271 ITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPI 350 (877)
T ss_pred ecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCcee
Confidence 00000 1123678999999999
Q ss_pred EEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC-------------
Q psy4049 179 EWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD------------- 245 (528)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~------------- 245 (528)
+...++|||+++..+++...+.+++++.+|.|+...+.+.+|+++ ++||||||| ++||++||.
T Consensus 351 Ep~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~-i~DWcISRQ---lwwGh~IPvWy~~~~g~v~v~~ 426 (877)
T COG0525 351 EPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMEN-IRDWCISRQ---LWWGHRIPVWYCKECGNVVVAE 426 (877)
T ss_pred eeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhh-CcCceeeee---eecCcccceEEecCCCcEEeCC
Confidence 999999999999999999999999777789999999999999999 889999999 599999992
Q ss_pred ------------------CCCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHhhc---
Q psy4049 246 ------------------DDTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLIAA--- 299 (528)
Q Consensus 246 ------------------~~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~--- 299 (528)
.+.+|+|+||+|++++++++|||+ ++. +|.++.+.|.||+| ||.+.++.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIf----fWvarmi~~~~~ 502 (877)
T COG0525 427 EEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIF----FWVARMIMRGLH 502 (877)
T ss_pred ccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhH----HHHHHHHHHHHH
Confidence 146899999999999999999998 666 69999999999999 677766543
Q ss_pred --CCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Q psy4049 300 --GLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLG 376 (528)
Q Consensus 300 --~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 376 (528)
|..||+.+++||++ ..+|+|||||+||+|+|.|++++||+|+|||++++.+..++|++|+++.++.. ++|.|++|
T Consensus 503 ~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~--rnF~nKlW 580 (877)
T COG0525 503 LTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY--RNFLNKLW 580 (877)
T ss_pred hcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHH--HHHHHHHH
Confidence 45799999999998 68999999999999999999999999999999999877799999999999986 55999999
Q ss_pred HHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhHhhhc
Q psy4049 377 NLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LANKFIDT 454 (528)
Q Consensus 377 n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n~y~~~ 454 (528)
|+.+.+.....+.... +. ... .....|+|++.+++++...+++++++|+|..|.+.|++|++ .|++|++.
T Consensus 581 Na~Rfv~~~~~~~~~~-~~---~~~----~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl 652 (877)
T COG0525 581 NATRFVLMNLDDLGPD-DL---DLL----ALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLEL 652 (877)
T ss_pred hHHHHHHhcccccCcc-cc---ccc----ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9975554322111110 00 001 12588999999999999999999999999999999999996 79999999
Q ss_pred cCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC--Cccccccccc
Q psy4049 455 TKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP--TNERLWDNMR 515 (528)
Q Consensus 455 ~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~--~~~~~w~~~~ 515 (528)
.|+. +..+ ..+..++..++..+|+.+++||+|||||++|+||+.+... .....||..+
T Consensus 653 ~K~~-l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~~~P~~~ 712 (877)
T COG0525 653 AKPR-LYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASWPEVD 712 (877)
T ss_pred hhhh-hcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCCCeEEeccCCCcc
Confidence 9974 4443 3345578889999999999999999999999999999884 3567899875
No 11
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1e-83 Score=719.29 Aligned_cols=501 Identities=19% Similarity=0.244 Sum_probs=418.0
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH----cCCCH--------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK----HKLET-------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~----~g~~~-------- 70 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||.|++..+++ .|+++
T Consensus 32 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~--G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f 109 (861)
T TIGR00422 32 KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMK--GYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEF 109 (861)
T ss_pred CCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhc--CCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHH
Confidence 56799999999999999999999999999999999999 99999999999999999987664 35555
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccccc
Q psy4049 71 ----IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRP 144 (528)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~ 144 (528)
.+|++++.+.+++++++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.++++|||.|++++++.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~ 189 (861)
T TIGR00422 110 REKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEY 189 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhc
Confidence 47899999999999999999877 445699999999999999999999999999999999999999999988643
Q ss_pred CCCch-----------h---------------------------------------------------------------
Q psy4049 145 DEKNE-----------E--------------------------------------------------------------- 150 (528)
Q Consensus 145 ~~~~~-----------~--------------------------------------------------------------- 150 (528)
+...+ .
T Consensus 190 ~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~ 269 (861)
T TIGR00422 190 KEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGA 269 (861)
T ss_pred ccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCc
Confidence 21000 0
Q ss_pred ----------------------------hhhhhhccCCC-------------------------CCCCCCcccccCCCCC
Q psy4049 151 ----------------------------ESFLLEHQIRP-------------------------DEKNEGQYVSIESNQP 177 (528)
Q Consensus 151 ----------------------------~~~~~~~~~~~-------------------------~~~g~~~~~~~~~g~~ 177 (528)
++.+++.|+.. .+..+.+|+|++||.+
T Consensus 270 V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ 349 (861)
T TIGR00422 270 VKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTV 349 (861)
T ss_pred eEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCE
Confidence 00011111110 0111356889999999
Q ss_pred cEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC---C--------
Q psy4049 178 VEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD---D-------- 246 (528)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~---~-------- 246 (528)
++++.++|||++++++++.+.++++.++..|.|+..++.+.+||++ ++|||||||+ +||+|||. +
T Consensus 350 ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~-l~DW~ISRq~---~WG~piP~w~~~~~~~~~v~ 425 (861)
T TIGR00422 350 VEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRN-IKDWCISRQL---IWGHRIPVWYCKECGEVYVA 425 (861)
T ss_pred EEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhc-cccceeeeec---ccCCcceEEEECCCCcEEec
Confidence 9999999999999999999999998766679999999999999998 9999999996 99999994 1
Q ss_pred --------------------CCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHhhc-C
Q psy4049 247 --------------------DTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLIAA-G 300 (528)
Q Consensus 247 --------------------~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~-~ 300 (528)
+.+|+||||||+++|++.+|||+ |+. ||.|++++|+||++||..+++++..++ +
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~ 505 (861)
T TIGR00422 426 KEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTG 505 (861)
T ss_pred cchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcC
Confidence 15799999999999999999975 666 999999999999999999888877776 4
Q ss_pred CCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Q psy4049 301 LEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLL 379 (528)
Q Consensus 301 ~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~ 379 (528)
..||+++++||+++ .+|+|||||+||+|+|.|++++||+|++||++++.++.++|++|+++.+.+. +++.++++|+.
T Consensus 506 ~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~--~~~~nkl~N~~ 583 (861)
T TIGR00422 506 QVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESA--RNFLNKLWNAS 583 (861)
T ss_pred CCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHH--HHHHHHHHHHH
Confidence 56779999999997 5999999999999999999999999999999998887799999999999875 44899999955
Q ss_pred HHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCc
Q psy4049 380 NRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKP 457 (528)
Q Consensus 380 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~ 457 (528)
|+..+..+.....+.. . ......|+|++++++.+.+.+.++|++|+++.|++.+++|+ ..+|+|++..++
T Consensus 584 -rf~~~~~~~~~~~~~~-~------~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~ 655 (861)
T TIGR00422 584 -RFVLMNLSDDLELSGG-E------EKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKY 655 (861)
T ss_pred -HHHHhccccccccccc-c------ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5554332211111100 0 11356799999999999999999999999999999999997 589999999999
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC---Cccccccccc--ccCccc
Q psy4049 458 WTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP---TNERLWDNMR--FSDNDM 521 (528)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~---~~~~~w~~~~--~~~~~~ 521 (528)
|....+ ...+..++.++..+++.+++||+|||||++|+||+.|+.. .....||..+ .+|.++
T Consensus 656 ~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~~~si~~~~~P~~~~~~~d~~~ 722 (861)
T TIGR00422 656 RLYNGN--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGADSIMLQSYPVVDAEFVDEEA 722 (861)
T ss_pred HHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcccCCceeecCCCCcccccCCHHH
Confidence 854322 2345678889999999999999999999999999999743 3457899876 334444
No 12
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.6e-83 Score=716.00 Aligned_cols=496 Identities=19% Similarity=0.280 Sum_probs=411.9
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH-----cCCCH-------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-----HKLET------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~-----~g~~~------- 70 (528)
+++|+|+.||||+||.|||||+++++++|+++||+||+ |++|++++|||+||.+++..+++ .|+++
T Consensus 47 ~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~--G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~ 124 (1052)
T PRK14900 47 RPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMS--GFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREA 124 (1052)
T ss_pred CCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhc--CCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHH
Confidence 46799999999999999999999999999999999999 99999999999999999886653 24433
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 71 -----IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
.+|++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++.|++.+|+
T Consensus 125 f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 125 FLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 35789999999999999998776 55669999999999999999999999999999999999999999999998
Q ss_pred cCCCch------------hhhh----------------h----------------------------------hh---cc
Q psy4049 144 PDEKNE------------EESF----------------L----------------------------------LE---HQ 158 (528)
Q Consensus 144 ~~~~~~------------~~~~----------------~----------------------------------~~---~~ 158 (528)
+.+... ...+ + .+ ..
T Consensus 205 ~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GT 284 (1052)
T PRK14900 205 HEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGT 284 (1052)
T ss_pred ccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCC
Confidence 754110 0000 0 00 00
Q ss_pred -------------------------CCCCCC--------------------------------------CCCcccccCCC
Q psy4049 159 -------------------------IRPDEK--------------------------------------NEGQYVSIESN 175 (528)
Q Consensus 159 -------------------------~~~~~~--------------------------------------g~~~~~~~~~g 175 (528)
..++++ -+.+++|++|+
T Consensus 285 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~ 364 (1052)
T PRK14900 285 GAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSA 364 (1052)
T ss_pred CeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCC
Confidence 000111 12568899999
Q ss_pred CCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCC---------
Q psy4049 176 QPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD--------- 246 (528)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~--------- 246 (528)
++++++..+|||++++++++.+.+++++++..|.|+..++.+.+||++ ++|||||||+ +||+|||..
T Consensus 365 ~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~-l~DW~ISRqr---~WG~PIP~w~~~~~~~~v 440 (1052)
T PRK14900 365 TILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRN-IHDWCISRQL---WWGHQIPAWYCPDGHVTV 440 (1052)
T ss_pred ceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhc-CccceEEeec---CCCceeCeEEcCCCcEEe
Confidence 999999999999999999999999998766679999999999999997 9999999996 899999952
Q ss_pred ------------------CCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHhhcC---
Q psy4049 247 ------------------DTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLIAAG--- 300 (528)
Q Consensus 247 ------------------~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~--- 300 (528)
+.+||||||||+++|++.+|||+ |+. ||.|++++|+||++ ||++.+++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~----~W~a~~l~~~~~~ 516 (1052)
T PRK14900 441 ARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIF----FWVARMMMMGLHF 516 (1052)
T ss_pred cccccccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHh----HHHHHHHHHHHHh
Confidence 35899999999999999999976 566 99999999999998 4666655543
Q ss_pred --CCCCcEEEEeeeeee-CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Q psy4049 301 --LEPPKSFLVHSHWTV-DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGN 377 (528)
Q Consensus 301 --~~~~~~~~~hg~~~~-~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n 377 (528)
..||+++++|||++. +|+|||||+||+|+|.|++++||+|++|||+++.++.++|++|+++.++.. +++.++++|
T Consensus 517 ~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~nkl~N 594 (1052)
T PRK14900 517 MGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGY--RAFANKLWN 594 (1052)
T ss_pred cCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHHHHHHH
Confidence 458899999999975 999999999999999999999999999999998888899999999999654 459999999
Q ss_pred HHHHHHhccc-CC--CCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhHhh
Q psy4049 378 LLNRCLSKSI-NP--DNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LANKFI 452 (528)
Q Consensus 378 ~~~r~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n~y~ 452 (528)
+ .|+..+.. +. .+..+. . ......|+|++.+++.+..++.++|++|+|+.+++.+++|+. .+|+|+
T Consensus 595 ~-~R~~~~~~~~~~~~~~~~~--~------~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yi 665 (1052)
T PRK14900 595 A-SRFALMNLSGYQERGEDPA--R------LARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYI 665 (1052)
T ss_pred H-HHHHHHhhhccCccccccc--c------cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHH
Confidence 5 56664322 11 111110 0 113467999999999999999999999999999999999984 899999
Q ss_pred hccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC---------CCcccccccccccCccc
Q psy4049 453 DTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI---------PTNERLWDNMRFSDNDM 521 (528)
Q Consensus 453 ~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~---------~~~~~~w~~~~~~~~~~ 521 (528)
+..+++ +..++ ...+..++.++..+|+.+++||+|||||++|+||+.|+. ......||..+.+|+++
T Consensus 666 e~~k~~-l~~~~-~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~~d~~~ 741 (1052)
T PRK14900 666 ELAKEA-LASED-PEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGEADEAA 741 (1052)
T ss_pred HhccHh-hccCC-HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCcccHHH
Confidence 998884 54443 334456778888999999999999999999999999973 12346899877665443
No 13
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-81 Score=698.13 Aligned_cols=492 Identities=19% Similarity=0.281 Sum_probs=409.0
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH-cCCCHH----------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-HKLETI---------- 71 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~-~g~~~~---------- 71 (528)
+++|+|+.||||+||.|||||+++++++|+++||+||+ |++|++++|||+||+||+.++++ .|+++.
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~--G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~ 114 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMR--GYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIEL 114 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcC--CCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHH
Confidence 46799999999999999999999999999999999999 99999999999999999999987 588776
Q ss_pred --HHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCC-
Q psy4049 72 --DFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDE- 146 (528)
Q Consensus 72 --~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~- 146 (528)
++++++.+.+++++++||+++| +++.|+++.|.+.++++|.+|+++|+||+++++++|||.|++++++.+|+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~ 194 (800)
T PRK13208 115 CRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRER 194 (800)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccc
Confidence 5999999999999999999877 88899999999999999999999999999999999999999999999885321
Q ss_pred -----------------------C--------------------------------------------------------
Q psy4049 147 -----------------------K-------------------------------------------------------- 147 (528)
Q Consensus 147 -----------------------~-------------------------------------------------------- 147 (528)
|
T Consensus 195 ~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p 274 (800)
T PRK13208 195 EGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT 274 (800)
T ss_pred cceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCC
Confidence 1
Q ss_pred ch-hhhh-hh------------------hccCC-------------------------CCCCCCCcccccCCCCCcEEee
Q psy4049 148 NE-EESF-LL------------------EHQIR-------------------------PDEKNEGQYVSIESNQPVEWVE 182 (528)
Q Consensus 148 ~~-~~~~-~~------------------~~~~~-------------------------~~~~g~~~~~~~~~g~~~~~~~ 182 (528)
.. .+-+ ++ +.|+. ..+..+.+|+|++||++++++.
T Consensus 275 ~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 354 (800)
T PRK13208 275 FGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILV 354 (800)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEec
Confidence 00 0000 00 00100 0011124589999999999999
Q ss_pred eceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC----C------------
Q psy4049 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD----D------------ 246 (528)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~----~------------ 246 (528)
++|||++++++++.+.+++++. .|.|+..++.+.+||++..+|||||||| +||+|||. +
T Consensus 355 ~~qwfl~~~~~~~~~~~~~~~~--~~~P~~~~~~~~~~l~~~~~DW~ISRqr---~WG~pIP~~~~~~~g~~~~~~~~~l 429 (800)
T PRK13208 355 TRQWFIKVLDLKEELLERGKEI--NWYPEHMRVRLENWIEGLNWDWCISRQR---YFGTPIPVWYCKDCGHPILPDEEDL 429 (800)
T ss_pred cceeeEeCHHHHHHHHHhhcCc--EEECHHHHHHHHHHHHhcCCCceeeecc---ccCCcceEEEeCCCCCeecCchhhh
Confidence 9999999999999999999765 5999999999999999833499999997 89999993 0
Q ss_pred ------------------------CCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHh
Q psy4049 247 ------------------------DTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLI 297 (528)
Q Consensus 247 ------------------------~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~ 297 (528)
+.+|+|+||||++++++.+|+|. |+. ||.|++++|+||+++|.....++..
T Consensus 430 ~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~ 509 (800)
T PRK13208 430 PVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAY 509 (800)
T ss_pred ccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHH
Confidence 13799999999999999999865 566 8999999999999966555444333
Q ss_pred h-cCCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHH
Q psy4049 298 A-AGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTL 375 (528)
Q Consensus 298 ~-~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 375 (528)
+ .|..|++++++||+++ .+|+|||||+||+|+|.|++++||+|++|||++ .+++++|++|+++.+.. ++++.+++
T Consensus 510 ~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~--~~~~l~kl 586 (800)
T PRK13208 510 LLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKI--GRRLLTKL 586 (800)
T ss_pred HhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHH--HHHHHHHH
Confidence 3 3556789999999986 699999999999999999999999999999999 67789999999999876 45689999
Q ss_pred HHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhHhhh
Q psy4049 376 GNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LANKFID 453 (528)
Q Consensus 376 ~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n~y~~ 453 (528)
+|+++++.. ..+ ....+. . ......|++++++++.+.+++.++|++|+++.|++.|++|+. .+|.|++
T Consensus 587 ~N~~r~~~~-~~~-~~~~~~--~------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie 656 (800)
T PRK13208 587 WNASRFVLH-FSA-DPEPDK--A------EVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLE 656 (800)
T ss_pred HHHHHHHHh-ccc-ccccCc--c------ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHH
Confidence 999766542 211 110100 0 123567999999999999999999999999999999999985 6999999
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC-CCccccccccc
Q psy4049 454 TTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI-PTNERLWDNMR 515 (528)
Q Consensus 454 ~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~-~~~~~~w~~~~ 515 (528)
..|+|....+ ..+.+..++.++..+++.+++||+|||||++|+||+.|+. ......||..+
T Consensus 657 ~~k~~~~~~~-~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~~~si~~~~wP~~~ 718 (800)
T PRK13208 657 LVKSRAYGED-EEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYGGSVHRASWPEPD 718 (800)
T ss_pred HhhHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCCCCceEeccCCCCC
Confidence 9998643322 2222567788899999999999999999999999999982 12356898875
No 14
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4e-82 Score=705.73 Aligned_cols=487 Identities=19% Similarity=0.275 Sum_probs=406.3
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH----HcCCCHH-------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI----KHKLETI------- 71 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~----~~g~~~~------- 71 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||.+++.+.+ +.|+++.
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~--G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f 112 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQ--GYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKF 112 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHH
Confidence 45699999999999999999999999999999999999 9999999999999998766543 3477664
Q ss_pred -----HHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccccc
Q psy4049 72 -----DFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRP 144 (528)
Q Consensus 72 -----~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~ 144 (528)
+|++++.+.+++++++||++.| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++++++.+|+.
T Consensus 113 ~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~ 192 (874)
T PRK05729 113 LEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEY 192 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhccc
Confidence 4689999999999999999876 556699999999999999999999999999999999999999999999985
Q ss_pred CCCch-------------------------------------hhhh-----------hhhc-------------------
Q psy4049 145 DEKNE-------------------------------------EESF-----------LLEH------------------- 157 (528)
Q Consensus 145 ~~~~~-------------------------------------~~~~-----------~~~~------------------- 157 (528)
++..+ ...| +++.
T Consensus 193 ~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V 272 (874)
T PRK05729 193 KEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAV 272 (874)
T ss_pred ccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcce
Confidence 42110 0000 0000
Q ss_pred -c--------------------CCCCCC--------------------------------------CCCcccccCCCCCc
Q psy4049 158 -Q--------------------IRPDEK--------------------------------------NEGQYVSIESNQPV 178 (528)
Q Consensus 158 -~--------------------~~~~~~--------------------------------------g~~~~~~~~~g~~~ 178 (528)
| ..+|.+ .+.+|+|++||.++
T Consensus 273 ~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i 352 (874)
T PRK05729 273 KITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVI 352 (874)
T ss_pred EecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceE
Confidence 0 001111 23468999999999
Q ss_pred EEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC---C---------
Q psy4049 179 EWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD---D--------- 246 (528)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~---~--------- 246 (528)
+++..+|||++++++++.+.+++++++..|.|+..++.+.+||++ ++|||||||+ +||+|||. .
T Consensus 353 ~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRq~---~WG~pIP~~~~~~~~~~v~~~ 428 (874)
T PRK05729 353 EPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMEN-IQDWCISRQL---WWGHRIPAWYDEDGEVYVGRE 428 (874)
T ss_pred EEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhc-Cccceeeeec---ccCCcccEEEeCCCcEEeCCc
Confidence 999999999999999999999998777789999999999999998 9999999995 99999992 0
Q ss_pred ------------CCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHhhc-----CCCCC
Q psy4049 247 ------------DTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLIAA-----GLEPP 304 (528)
Q Consensus 247 ------------~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~-----~~~~~ 304 (528)
+.+|+||||+|+++|++.+|||+ |+. ||.|++++|+||++ ||++.+++. |..||
T Consensus 429 ~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~----~W~a~~~~~~~~~~~~~Pf 504 (874)
T PRK05729 429 EPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIF----FWVARMIMMGLHFTGQVPF 504 (874)
T ss_pred ccccccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccc----hHHHHHHHHHHHhcCCCch
Confidence 25799999999999999999975 666 89999999999999 466655543 33577
Q ss_pred cEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 305 KSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCL 383 (528)
Q Consensus 305 ~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~ 383 (528)
+++++||++. .+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+.+. +++.++++|+. |+.
T Consensus 505 k~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~--~~~~nkl~N~~-Rf~ 581 (874)
T PRK05729 505 KDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGY--RNFANKLWNAS-RFV 581 (874)
T ss_pred hheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHH--HHHHHHHHHHH-HHH
Confidence 9999999996 7999999999999999999999999999999998877899999999999875 35899999975 554
Q ss_pred hcc-cCCC-CCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCccc
Q psy4049 384 SKS-INPD-NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKPWT 459 (528)
Q Consensus 384 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~ 459 (528)
.+. .+.. ...+. .......|+|++.+++.+.+.+.++|++|+++.|++.|++|+ ..+|.|++..|+|
T Consensus 582 ~~~~~~~~~~~~~~--------~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~- 652 (874)
T PRK05729 582 LMNLEGADVGELPD--------PEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPV- 652 (874)
T ss_pred HHhcccCCcccccc--------cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 432 1111 11110 012357799999999999999999999999999999999998 4899999999998
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC-----Cccccccccc
Q psy4049 460 LRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP-----TNERLWDNMR 515 (528)
Q Consensus 460 l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~-----~~~~~w~~~~ 515 (528)
+. + . .+..++.++..+++.+++||+|||||++|+||+.|+.. .....||..+
T Consensus 653 l~-~--~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~~~~~si~~~~~P~~~ 709 (874)
T PRK05729 653 LQ-E--A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPLGIEESIMLAPWPEAD 709 (874)
T ss_pred hh-h--h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccCCCCCceeecCCCCCC
Confidence 44 2 1 25567888899999999999999999999999999753 3346888766
No 15
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=6.6e-84 Score=655.48 Aligned_cols=372 Identities=42% Similarity=0.744 Sum_probs=326.1
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
+|||+|+|||||.|||||+++++.||+++||+|++ |++|++++|+|+||++|+.+|+++|++|+++|+++.+.|++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~--G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~ 78 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLR--GHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELL 78 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHT--T-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhc--ccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----hhhhhhhhccCCC
Q psy4049 86 KTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN----EEESFLLEHQIRP 161 (528)
Q Consensus 86 ~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~----~~~~~~~~~~~~~ 161 (528)
+++||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|++|++++++++.||. ...+..||.|+..
T Consensus 79 ~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~ 158 (391)
T PF09334_consen 79 EALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRP 158 (391)
T ss_dssp HHTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSB
T ss_pred HHcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999983 3566789999874
Q ss_pred -CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccc
Q psy4049 162 -DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWG 240 (528)
Q Consensus 162 -~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG 240 (528)
++.....|+|..||++++++.+++|||+|+++++.+.+|+++.+. +.|...++.+.+|++++++||+|||+ +.||
T Consensus 159 ~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~l~~~L~d~~Is~~---~~WG 234 (391)
T PF09334_consen 159 LEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPD-FPPPRVREIVRNWLKEGLPDLSISRP---LDWG 234 (391)
T ss_dssp EECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTT-SSHHHHHHHHHHHHHT----EE-ECT---TSSS
T ss_pred cccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCC-CCChhHHHHHHHHhhcccCceeeecC---CCCc
Confidence 566677889999999999999999999999999999999988863 37888888999999999999999987 6999
Q ss_pred cccCCCCCCeEEEeccchhhhhhhhcCCC--------CCC-C-----CccceEeeecccchhhhHHHHHHhhcCCCCCcE
Q psy4049 241 IPVPDDDTQTIYVWLDALMNYLTVSGYPD--------FHT-W-----PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKS 306 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~~~~~~~~~--------~~~-~-----~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~ 306 (528)
||+|+++++++|||||++++|++++++.. |.. | +..+|++|+|+++||+++||+++++.|+++|++
T Consensus 235 I~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~ 314 (391)
T PF09334_consen 235 IPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRR 314 (391)
T ss_dssp EEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SE
T ss_pred ceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCE
Confidence 99999999999999999999999998742 334 5 345999999999999999999999999999999
Q ss_pred EEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 307 FLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCL 383 (528)
Q Consensus 307 ~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~ 383 (528)
+++|||++++|+|||||+||+|++.|+++.+|+|++||||++.++..+|.+|+++.+.+..|++|.+.++|+++|++
T Consensus 315 i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~~ 391 (391)
T PF09334_consen 315 IVVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRVL 391 (391)
T ss_dssp EEEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred EEeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.3e-81 Score=695.47 Aligned_cols=497 Identities=20% Similarity=0.292 Sum_probs=409.2
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH----cCCCH--------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK----HKLET-------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~----~g~~~-------- 70 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||.+++.+.++ .|+++
T Consensus 87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~--G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f 164 (958)
T PLN02943 87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMK--GRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEF 164 (958)
T ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhc--CCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHH
Confidence 56799999999999999999999999999999999999 99999999999999999886543 36554
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccccc
Q psy4049 71 ----IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRP 144 (528)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~ 144 (528)
.+|++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++.+++.+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey 244 (958)
T PLN02943 165 TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 244 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhc
Confidence 45778999999999999999765 677799999999999999999999999999999999999999999999987
Q ss_pred CCCch-----------hh-hh-------------------------------------hh-hcc----------------
Q psy4049 145 DEKNE-----------EE-SF-------------------------------------LL-EHQ---------------- 158 (528)
Q Consensus 145 ~~~~~-----------~~-~~-------------------------------------~~-~~~---------------- 158 (528)
.+..+ .+ .+ +. ++.
T Consensus 245 ~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG 324 (958)
T PLN02943 245 SEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTG 324 (958)
T ss_pred ccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCc
Confidence 64211 00 01 00 000
Q ss_pred ------------------------CCCCCC----------------------------------CCCcccccCCCCCcEE
Q psy4049 159 ------------------------IRPDEK----------------------------------NEGQYVSIESNQPVEW 180 (528)
Q Consensus 159 ------------------------~~~~~~----------------------------------g~~~~~~~~~g~~~~~ 180 (528)
..+|++ .+.+++|++||.+++.
T Consensus 325 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~ 404 (958)
T PLN02943 325 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 404 (958)
T ss_pred eEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEE
Confidence 001111 1246889999999999
Q ss_pred eeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC------C--------
Q psy4049 181 VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD------D-------- 246 (528)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~------~-------- 246 (528)
+..+|||++++++++.+.++++.++..|+|+..++.+.+|+++ ++|||||||+ +||+|||. +
T Consensus 405 ~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQr---~WG~pIP~w~~~~~~~~~~~~v~ 480 (958)
T PLN02943 405 LVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSN-IKDWCISRQL---WWGHRIPVWYIVGKDCEEDYIVA 480 (958)
T ss_pred EeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhc-CccceEEEec---CCCCccCceeccccCCCceEEec
Confidence 9999999999999999999998777789999999999999996 9999999996 99999994 1
Q ss_pred ----------------------CCCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhh
Q psy4049 247 ----------------------DTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIA 298 (528)
Q Consensus 247 ----------------------~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~ 298 (528)
+.+|+||||||+++|++.+|||+ |+. ||.|++++|+||++ ||++.+.+
T Consensus 481 ~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~----fW~a~m~~ 556 (958)
T PLN02943 481 RSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILF----FWVARMVM 556 (958)
T ss_pred CcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHH----HHHHHHHH
Confidence 35899999999999999999965 566 89999999999998 56676655
Q ss_pred cCC-----CCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHH
Q psy4049 299 AGL-----EPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELA 372 (528)
Q Consensus 299 ~~~-----~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~ 372 (528)
+|. .|++++++||+++ .+|+|||||+||+|+|.|++++||+|++|||+++.. +++|++|+++.+.+ ++++.
T Consensus 557 ~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~-~~~d~~fs~~~l~~--~~~~~ 633 (958)
T PLN02943 557 MGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGT-AGQDLNLSTERLTS--NKAFT 633 (958)
T ss_pred hhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCC-CCCCccccHHHHHH--HHHHH
Confidence 543 3789999999985 799999999999999999999999999999999754 58999999999987 46689
Q ss_pred HHHHHHHHHHHhcccCCCCC------C-CCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy4049 373 NTLGNLLNRCLSKSINPDNV------N-PLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL 445 (528)
Q Consensus 373 ~~l~n~~~r~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~ 445 (528)
++++|+.+++...+.+.... . ...+... ....+...|+|++.+++.+.+++.++|++|+|+.|++.+++|+
T Consensus 634 ~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~ 711 (958)
T PLN02943 634 NKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE--SLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFF 711 (958)
T ss_pred HHHHHHHHHHHhccccccccccccccccccCCccc--cccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 99999876665422110000 0 0000000 0012357899999999999999999999999999999999996
Q ss_pred --HHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC---Cccccccccc
Q psy4049 446 --HLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP---TNERLWDNMR 515 (528)
Q Consensus 446 --~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~---~~~~~w~~~~ 515 (528)
..+|+|++..|++ +..++....+..+..++..+++.+++||+|||||++|+||+.|+.. .....||..+
T Consensus 712 ~~~~~d~YiE~~Kpr-l~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~~~si~~~~wP~~~ 785 (958)
T PLN02943 712 WSDFADWYIEASKTR-LYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYRKEALIVSPWPQTS 785 (958)
T ss_pred HHHHHHHHHHhccHh-hccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCCCCceeecCCCCCc
Confidence 5899999999996 4443222335667888889999999999999999999999999742 2347898865
No 17
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.8e-80 Score=687.96 Aligned_cols=494 Identities=19% Similarity=0.273 Sum_probs=406.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc------CCCHH-----
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH------KLETI----- 71 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~------g~~~~----- 71 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||+||+.+++++ +.++.
T Consensus 48 ~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~--G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~ 125 (912)
T PRK05743 48 KPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMS--GFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKK 125 (912)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcc--CCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHH
Confidence 45699999999999999999999999999999999999 999999999999999999999875 55665
Q ss_pred --HHHHHHHHHHHHHHhhcCc--ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCC
Q psy4049 72 --DFCNKISDQYKLMFKTYDI--EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEK 147 (528)
Q Consensus 72 --~~~~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~ 147 (528)
++++++.+.+++++++||+ ++|+.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++.|++.+|+.++.
T Consensus 126 c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~ 205 (912)
T PRK05743 126 CREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDK 205 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccc
Confidence 4889999999999999999 667899999999999999999999999999999999999999999999999985421
Q ss_pred c-----------hh-------hh-----------------------------------hh--------------------
Q psy4049 148 N-----------EE-------ES-----------------------------------FL-------------------- 154 (528)
Q Consensus 148 ~-----------~~-------~~-----------------------------------~~-------------------- 154 (528)
. +. .. |+
T Consensus 206 ~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 285 (912)
T PRK05743 206 TSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEV 285 (912)
T ss_pred cCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEE
Confidence 0 00 00 00
Q ss_pred ---------h---------hc----------------------------------------cCCCCCCC-----------
Q psy4049 155 ---------L---------EH----------------------------------------QIRPDEKN----------- 165 (528)
Q Consensus 155 ---------~---------~~----------------------------------------~~~~~~~g----------- 165 (528)
. +. ...+|.+|
T Consensus 286 ~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 365 (912)
T PRK05743 286 LATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAG 365 (912)
T ss_pred EEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCC
Confidence 0 00 00011111
Q ss_pred ---------------------------CCcccccCCCCCcEEeeeceeeeeccc--cHHHHHHHHHhCCCcccchhhHHH
Q psy4049 166 ---------------------------EGQYVSIESNQPVEWVEEQNYMFKLSN--YINDVAHWLDKNEDVVKPKKFYNQ 216 (528)
Q Consensus 166 ---------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~p~~~~~~ 216 (528)
+.+|+|++||+|++++.++|||+++++ +++.+.+.+++. .|.|+..+++
T Consensus 366 l~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v--~~~P~~~~~r 443 (912)
T PRK05743 366 LFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKV--KWIPAWGKNR 443 (912)
T ss_pred cCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHccc--EEEChHHHHH
Confidence 246899999999999999999999998 999999999865 5999999999
Q ss_pred HHHHHhccCCCccccccCCCcccccccCC----C--------------------------------------------CC
Q psy4049 217 LRNMCSEIENDISVSRPKARVHWGIPVPD----D--------------------------------------------DT 248 (528)
Q Consensus 217 ~~~~l~~~~~dw~isR~~~~~~WG~~ip~----~--------------------------------------------~~ 248 (528)
+.+|+++ ++|||||||| +||+|||. + +.
T Consensus 444 ~~~~i~~-~~DWcISRQR---~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~ 519 (912)
T PRK05743 444 IESMVEN-RPDWCISRQR---TWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKET 519 (912)
T ss_pred HHHHHhc-CcCccccccc---eeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECC
Confidence 9999998 9999999997 89999994 1 23
Q ss_pred CeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc--hhhhHHHHHHhhcCCCCCcEEEEeeeee-eCCCcccccC
Q psy4049 249 QTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK--FHGIYWPAFLIAAGLEPPKSFLVHSHWT-VDGVKMSKSV 324 (528)
Q Consensus 249 ~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~--~h~~~~~a~~~~~~~~~~~~~~~hg~~~-~~g~KmSkS~ 324 (528)
+|+||||||++++.+.++... .. ||.|++++|+||++ ||..++++++. .|.+||+++++|||++ .+|+|||||+
T Consensus 520 DvlDvWfdSg~s~~~~~~~~~-~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G~KMSKSl 597 (912)
T PRK05743 520 DILDVWFDSGSSHAAVLEQRP-ELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKGRKMSKSL 597 (912)
T ss_pred chhhhhhhhCCCHHHHhcCcc-ccCCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCCCCCCCCC
Confidence 578999999998887776421 23 89999999999998 67888888765 7889999999999996 5999999999
Q ss_pred CCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhc
Q psy4049 325 GNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVM 404 (528)
Q Consensus 325 gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~ 404 (528)
||+|+|.+++++||+|++|||+++ .++++|++|+.+.+.+. .+..++++|+++.+.....+.. +. ....+ .
T Consensus 598 GNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~nl~~~~---~~--~~~~~-~ 668 (912)
T PRK05743 598 GNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRFLLGNLNDFD---PA--KDAVP-Y 668 (912)
T ss_pred CCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHhCccCCC---cc--cccCC-c
Confidence 999999999999999999999997 66799999999998874 3467789999876664332211 10 00000 0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHH
Q psy4049 405 FTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRI 482 (528)
Q Consensus 405 ~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~ 482 (528)
..+...|+|++.+++++.+.+.++|++|+|++|++.|++|+ ..+|.|++..|+|.-........+.++..++..+++.
T Consensus 669 ~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~ 748 (912)
T PRK05743 669 EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEA 748 (912)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 12357799999999999999999999999999999999999 4789999999985221111112344456677788888
Q ss_pred HHHcccccchHHHHHHHHHcCC----CCccccccccc
Q psy4049 483 CGIGLQPIVPKLADKLLTRLGI----PTNERLWDNMR 515 (528)
Q Consensus 483 l~~ll~P~~P~~~e~l~~~l~~----~~~~~~w~~~~ 515 (528)
++++|+|||||++|++|+.|+. ......||..+
T Consensus 749 l~~lLaPi~P~~aEelw~~l~~~~~~sv~~~~wP~~~ 785 (912)
T PRK05743 749 LVRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVP 785 (912)
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCCCceEEecCCCCc
Confidence 9999999999999999999963 12346888765
No 18
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=4.9e-80 Score=696.23 Aligned_cols=505 Identities=18% Similarity=0.242 Sum_probs=412.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHH-----HHcCCCH-------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAA-----IKHKLET------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a-----~~~g~~~------- 70 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||.+++... .+.|+++
T Consensus 59 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~--G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~ 136 (995)
T PTZ00419 59 GKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMK--GDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREE 136 (995)
T ss_pred CCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhc--CCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHH
Confidence 46799999999999999999999999999999999999 999999999999999986553 3445554
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 71 -----IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
.+|++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|.+++.+|+
T Consensus 137 f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe 216 (995)
T PTZ00419 137 FLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE 216 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcc
Confidence 46889999999999999998776 88889999999999999999999999999999999999999999999987
Q ss_pred cCCCc---------------------------hhhh-h-------------------------------------h-h--
Q psy4049 144 PDEKN---------------------------EEES-F-------------------------------------L-L-- 155 (528)
Q Consensus 144 ~~~~~---------------------------~~~~-~-------------------------------------~-~-- 155 (528)
..+.. +.+. + + .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~ 296 (995)
T PTZ00419 217 FEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDR 296 (995)
T ss_pred cccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCC
Confidence 32111 0000 1 0 0
Q ss_pred ------hc--------cC-------------------------CCCCC--------------------------------
Q psy4049 156 ------EH--------QI-------------------------RPDEK-------------------------------- 164 (528)
Q Consensus 156 ------~~--------~~-------------------------~~~~~-------------------------------- 164 (528)
+. .+ .++++
T Consensus 297 ~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 297 KIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred EEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 00 00 00111
Q ss_pred ------CCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcc
Q psy4049 165 ------NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH 238 (528)
Q Consensus 165 ------g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~ 238 (528)
.+.+|+|++||.+++++.++|||++++++++.+.++++.++..|.|+..++.+.+|+++ ++|||||||+ +
T Consensus 377 ~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQr---~ 452 (995)
T PTZ00419 377 RDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLEN-IQDWCISRQL---W 452 (995)
T ss_pred EeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhc-cccceeeeec---c
Confidence 12558999999999999999999999999999999998777789999999999999998 9999999996 9
Q ss_pred cccccCCC---------------------------------------------CCCeEEEeccchhhhhhhhcCCC----
Q psy4049 239 WGIPVPDD---------------------------------------------DTQTIYVWLDALMNYLTVSGYPD---- 269 (528)
Q Consensus 239 WG~~ip~~---------------------------------------------~~~~~~~wfds~~~~~~~~~~~~---- 269 (528)
||+|||.. +.+|+||||||+++|++.+|||+
T Consensus 453 WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~ 532 (995)
T PTZ00419 453 WGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDD 532 (995)
T ss_pred cCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHH
Confidence 99999951 13899999999999999999976
Q ss_pred CCC-CCccceEeeecccchhhhHHHHHHhhcC-----CCCCcEEEEeeeee-eCCCcccccCCCccCcchhhh-------
Q psy4049 270 FHT-WPPHIQILGKDILKFHGIYWPAFLIAAG-----LEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLS------- 335 (528)
Q Consensus 270 ~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~-----~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~------- 335 (528)
++. ||.|++++|+||++ +|++.+.+++ ..||+++++||++. .+|+|||||+||+|+|.++++
T Consensus 533 ~~~~~P~d~~~~G~Dii~----~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l 608 (995)
T PTZ00419 533 LQRFFPTSLLETGSDILF----FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDL 608 (995)
T ss_pred HhhcCCCcEEEechhHHh----HHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhH
Confidence 566 89999999999998 5666554433 35779999999995 599999999999999999998
Q ss_pred ------------------------------hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4049 336 ------------------------------DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK 385 (528)
Q Consensus 336 ------------------------------~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~ 385 (528)
+||+|++|||+++.++..+|++|+.+.+... +++.++++|+++++...
T Consensus 609 ~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~--~~f~nklwN~~rf~~~~ 686 (995)
T PTZ00419 609 NQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGY--RHFCNKLWNAVKFALMK 686 (995)
T ss_pred HHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 8999999999998887789999999998854 56999999999887754
Q ss_pred ccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCccccccc
Q psy4049 386 SINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKPWTLRKE 463 (528)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~l~~~ 463 (528)
................+ .......|+|++.+++++.+.+.++|++|+|+.|++.+++|+ ..+|+|++.+++|. ...
T Consensus 687 ~~~~~~~~~~~~~~~~~-~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l-~~~ 764 (995)
T PTZ00419 687 LLKDFNLPNSTLFKPNN-VESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRL-SKQ 764 (995)
T ss_pred ccccccccccccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhh-hcC
Confidence 32211000000000000 012346799999999999999999999999999999999985 47999999999985 222
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC------CCccccccccc--ccCccc
Q psy4049 464 NKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI------PTNERLWDNMR--FSDNDM 521 (528)
Q Consensus 464 ~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~------~~~~~~w~~~~--~~~~~~ 521 (528)
.....+..+..++..+++.+++||+|||||++|+||+.|+. ......||..+ ..|+++
T Consensus 765 ~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~si~~~~~P~~~~~~~d~~~ 830 (995)
T PTZ00419 765 SDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSESISIAKYPQPNPGWNNEAL 830 (995)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCeeeccCCCCCCcccCCHHH
Confidence 12334566788889999999999999999999999999974 22347898865 334444
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-80 Score=690.88 Aligned_cols=502 Identities=19% Similarity=0.298 Sum_probs=408.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH-cCCC------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-HKLE------------ 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~-~g~~------------ 69 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||+||+.++++ .|++
T Consensus 40 ~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~--G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~ 117 (975)
T PRK06039 40 GPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMK--GYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEK 117 (975)
T ss_pred CCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhC--CCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHH
Confidence 56799999999999999999999999999999999999 99999999999999999999976 4654
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcc--cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 70 ----TIDFCNKISDQYKLMFKTYDIE--YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
+.+++.++.+.+++.+++||+. +++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|.|++.+++
T Consensus 118 f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~ 197 (975)
T PRK06039 118 FNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVA 197 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHh
Confidence 4689999999999999999965 5688889999999999999999999999999999999999999999999998
Q ss_pred --cCCCc-----------h--------------------------h----------hhh---------------------
Q psy4049 144 --PDEKN-----------E--------------------------E----------ESF--------------------- 153 (528)
Q Consensus 144 --~~~~~-----------~--------------------------~----------~~~--------------------- 153 (528)
.++.. + . +.|
T Consensus 198 ~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~ 277 (975)
T PRK06039 198 QGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETF 277 (975)
T ss_pred hcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeee
Confidence 22110 0 0 010
Q ss_pred ----hh------------h--ccC----------------------------------------CCCCCC----------
Q psy4049 154 ----LL------------E--HQI----------------------------------------RPDEKN---------- 165 (528)
Q Consensus 154 ----~~------------~--~~~----------------------------------------~~~~~g---------- 165 (528)
+. + ... .+|.+|
T Consensus 278 ~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~ 357 (975)
T PRK06039 278 KGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYA 357 (975)
T ss_pred cCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCcccc
Confidence 00 0 000 001111
Q ss_pred ----------------------------CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHH-H
Q psy4049 166 ----------------------------EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYN-Q 216 (528)
Q Consensus 166 ----------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-~ 216 (528)
+.+|+|++||+|++++.++|||++++++++.+.+++++. .|.|+..++ .
T Consensus 358 G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i--~~~P~~~~~~~ 435 (975)
T PRK06039 358 GKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKI--NWYPEHIKDGR 435 (975)
T ss_pred CCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCe--EEECcccchhh
Confidence 256899999999999999999999999999999998764 599999999 9
Q ss_pred HHHHHhccCCCccccccCCCcccccccCC----CC---------------------------------------------
Q psy4049 217 LRNMCSEIENDISVSRPKARVHWGIPVPD----DD--------------------------------------------- 247 (528)
Q Consensus 217 ~~~~l~~~~~dw~isR~~~~~~WG~~ip~----~~--------------------------------------------- 247 (528)
+.+||++ ++|||||||| +||+|||. +.
T Consensus 436 ~~~wl~~-l~DW~ISRqr---~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r 511 (975)
T PRK06039 436 FGKWLEN-ARDWNISRNR---YWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRR 511 (975)
T ss_pred HHHHHhc-Cccceeeecc---ccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEe
Confidence 9999997 9999999997 89999993 11
Q ss_pred -CCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhh---cCCCCCcEEEEeeeee-eC
Q psy4049 248 -TQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIA---AGLEPPKSFLVHSHWT-VD 316 (528)
Q Consensus 248 -~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~---~~~~~~~~~~~hg~~~-~~ 316 (528)
.+|+||||||+++|++.++||. |+. ||.|++++|+||++ +||...++.+ .|.+||+++++||+++ .+
T Consensus 512 ~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r--~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~ 589 (975)
T PRK06039 512 VPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTR--GWFYTLLALSTALFDRPPYKNVLVHGHVLDED 589 (975)
T ss_pred ccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHh--hHHHHHHHHHHHhcCCCcccEEEEeeeEECCC
Confidence 2899999999999999999865 566 99999999999999 4665554433 3668999999999986 59
Q ss_pred CCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc
Q psy4049 317 GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLV 396 (528)
Q Consensus 317 g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~ 396 (528)
|+|||||+||+|+|.|++++||+|++|||+++.++.++|++|+++.+.+..++ +.++++|+++++.... +..+..+..
T Consensus 590 G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~-~l~kl~N~~~f~~~y~-~~~~~~~~~ 667 (975)
T PRK06039 590 GQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRK-FLLTLWNVYSFFVLYA-NLDGFDYPP 667 (975)
T ss_pred CCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHH-HHHHHHHHHHHHHHHh-hhccCCccc
Confidence 99999999999999999999999999999999887799999999996555444 5689999987765321 111100000
Q ss_pred ccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhHhhhccCc--ccccccCcHHHHHHHH
Q psy4049 397 NRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHL-ANKFIDTTKP--WTLRKENKIEELNLVL 473 (528)
Q Consensus 397 ~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~-~n~y~~~~k~--~~l~~~~~~~~~~~~~ 473 (528)
... ..+.+...|+|++.+++.+...+.++|++|+++.|++.|++|+.. +|+|++..++ |....+ ..+.+++
T Consensus 668 --~~~-~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~---~~~~~a~ 741 (975)
T PRK06039 668 --AED-EVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDD---PDKLAAY 741 (975)
T ss_pred --ccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc---HHHHHHH
Confidence 000 001235789999999999999999999999999999999999975 5789887755 432211 2344577
Q ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHcCC-----CCccccccccc--ccCccch
Q psy4049 474 GVTFEVLRICGIGLQPIVPKLADKLLTRLGI-----PTNERLWDNMR--FSDNDMF 522 (528)
Q Consensus 474 ~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~-----~~~~~~w~~~~--~~~~~~~ 522 (528)
.++..+|+.++++|+|||||++|+||+.|+. +.....||..+ .+|.++.
T Consensus 742 ~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d~~le 797 (975)
T PRK06039 742 ATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDEELE 797 (975)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCccccCCHHHH
Confidence 7888999999999999999999999999984 12357899876 3455543
No 20
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=3.2e-79 Score=685.16 Aligned_cols=503 Identities=17% Similarity=0.240 Sum_probs=408.5
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH-----cCCCH-------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-----HKLET------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~-----~g~~~------- 70 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||.+++.++++ .|+++
T Consensus 127 ~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~--G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~ 204 (1066)
T PLN02381 127 KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMS--GYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREE 204 (1066)
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhC--CCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHH
Confidence 56799999999999999999999999999999999999 99999999999999999988764 36544
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 71 -----IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
.+|++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|.+++.+|+
T Consensus 205 f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVe 284 (1066)
T PLN02381 205 FVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVD 284 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhh
Confidence 37889999999999999998766 66679999999999999999999999999999999999999999999876
Q ss_pred cCCCc---------------------------hhhhh-------------------------------------------
Q psy4049 144 PDEKN---------------------------EEESF------------------------------------------- 153 (528)
Q Consensus 144 ~~~~~---------------------------~~~~~------------------------------------------- 153 (528)
..+.. +.+.+
T Consensus 285 y~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~i 364 (1066)
T PLN02381 285 YIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKL 364 (1066)
T ss_pred hhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEE
Confidence 43211 00000
Q ss_pred --hhhc---------------------------------------cCCCCC-----------------------------
Q psy4049 154 --LLEH---------------------------------------QIRPDE----------------------------- 163 (528)
Q Consensus 154 --~~~~---------------------------------------~~~~~~----------------------------- 163 (528)
+++. .+..+.
T Consensus 365 pIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~ 444 (1066)
T PLN02381 365 PIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYR 444 (1066)
T ss_pred EEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEe
Confidence 0000 000000
Q ss_pred ----CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHH---HhCCCcccchhhHHHHHHHHhccCCCccccccCCC
Q psy4049 164 ----KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWL---DKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKAR 236 (528)
Q Consensus 164 ----~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~ 236 (528)
..+.+|+|++|+++++++..+|||++++++++.+.+.+ ...+..|.|+..++.+.+||++ ++||||||||
T Consensus 445 ~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n-~~DWcISRQr-- 521 (1066)
T PLN02381 445 GAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLEN-IRDWCISRQL-- 521 (1066)
T ss_pred cceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhc-Cccceeeeec--
Confidence 01256899999999999999999999999999999988 4456679999999999999999 9999999997
Q ss_pred cccccccCC---------------------------------------------CCCCeEEEeccchhhhhhhhcCCC--
Q psy4049 237 VHWGIPVPD---------------------------------------------DDTQTIYVWLDALMNYLTVSGYPD-- 269 (528)
Q Consensus 237 ~~WG~~ip~---------------------------------------------~~~~~~~~wfds~~~~~~~~~~~~-- 269 (528)
+||+|||. .+.+||||||+|++++++.+|||.
T Consensus 522 -~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~ 600 (1066)
T PLN02381 522 -WWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDT 600 (1066)
T ss_pred -ccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCH
Confidence 99999982 034699999999999999999976
Q ss_pred --CCC-CCccceEeeecccchhhhHHHHHHhh---cCCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhh-------
Q psy4049 270 --FHT-WPPHIQILGKDILKFHGIYWPAFLIA---AGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLS------- 335 (528)
Q Consensus 270 --~~~-~~~di~~~G~D~~~~h~~~~~a~~~~---~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~------- 335 (528)
++. ||.|++++|.||++ +|+...++.+ .|..||+++++||++. .+|+|||||+||+|+|.++++
T Consensus 601 ~~~~~~~P~d~~~~G~Dii~--~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l 678 (1066)
T PLN02381 601 DDLKAFYPTSVLETGHDILF--FWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 678 (1066)
T ss_pred HHHhccCCCeeeeecchhhh--hHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhH
Confidence 566 89999999999998 4544444433 2558999999999994 799999999999999999998
Q ss_pred ------------------------------hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4049 336 ------------------------------DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK 385 (528)
Q Consensus 336 ------------------------------~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~ 385 (528)
+||+|++|||+++.+...++++|+.+.+... ++++++++|++..+...
T Consensus 679 ~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~--r~f~nKlwNa~rf~~~~ 756 (1066)
T PLN02381 679 HKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGY--RQWCNKLWNAVRFAMSK 756 (1066)
T ss_pred HHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 7899999999998887788999999998754 55899999998765532
Q ss_pred ccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCccccccc
Q psy4049 386 SINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKPWTLRKE 463 (528)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~l~~~ 463 (528)
... ...+.. .++ .......|+|++.+++.+...+.++|++|+|+.|++.+++|+ ..+|.|++.+++|.....
T Consensus 757 ~~~--~~~~~~---~~~-~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~ 830 (1066)
T PLN02381 757 LGD--DYTPPA---TLS-VETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN 830 (1066)
T ss_pred ccc--ccCccc---ccC-ccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCC
Confidence 210 011110 000 012356899999999999999999999999999999999996 479999999999754322
Q ss_pred C-cHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC--------CCccccccccc--ccCccc
Q psy4049 464 N-KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI--------PTNERLWDNMR--FSDNDM 521 (528)
Q Consensus 464 ~-~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~--------~~~~~~w~~~~--~~~~~~ 521 (528)
. ....+..+..++..++..+++||+|||||++|+||+.|+. ......||..+ .+|.++
T Consensus 831 ~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~~SI~~~~~P~~~~~~~d~~l 899 (1066)
T PLN02381 831 PEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTNEKV 899 (1066)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCCCeeEeCCCCCCCchhCCHHH
Confidence 1 0123345667888999999999999999999999999963 12347898876 345444
No 21
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.3e-78 Score=679.53 Aligned_cols=505 Identities=16% Similarity=0.231 Sum_probs=408.9
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH-HcCCC------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI-KHKLE------------ 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~-~~g~~------------ 69 (528)
+++|++..||||+||.|||||+++++++|+++||.||+ ||+|.+++|||+||+||+..++ ++|++
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~--G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~ 114 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMT--GHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDK 114 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC--CCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHH
Confidence 45699999999999999999999999999999999999 9999999999999999999985 55653
Q ss_pred ----HHHHHHHHHHHHHHHHhhcC--cccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 70 ----TIDFCNKISDQYKLMFKTYD--IEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~~l~--i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
+++++.++.+.+++++++|| +++|+.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|.|++.+++
T Consensus 115 f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~ 194 (1159)
T PLN02882 115 YNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAG 194 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhh
Confidence 35688999999999999999 577899999999999999999999999999999999999999999999987772
Q ss_pred --cCCCc---------------------------------------hhh---------h---------------------
Q psy4049 144 --PDEKN---------------------------------------EEE---------S--------------------- 152 (528)
Q Consensus 144 --~~~~~---------------------------------------~~~---------~--------------------- 152 (528)
.+... +.+ +
T Consensus 195 ~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 274 (1159)
T PLN02882 195 LNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSK 274 (1159)
T ss_pred hhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhccc
Confidence 22100 000 0
Q ss_pred -----------h----------h--------h-------hcc-----------------------------------CC-
Q psy4049 153 -----------F----------L--------L-------EHQ-----------------------------------IR- 160 (528)
Q Consensus 153 -----------~----------~--------~-------~~~-----------------------------------~~- 160 (528)
+ + . +.. +.
T Consensus 275 ~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~ 354 (1159)
T PLN02882 275 KGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGII 354 (1159)
T ss_pred ccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCC
Confidence 0 0 0 000 00
Q ss_pred ---------CCCCC--------------------------------------CCcccccCCCCCcEEeeeceeeeecccc
Q psy4049 161 ---------PDEKN--------------------------------------EGQYVSIESNQPVEWVEEQNYMFKLSNY 193 (528)
Q Consensus 161 ---------~~~~g--------------------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 193 (528)
+|++| +++|+|++||+|++++..+|||++++++
T Consensus 355 ~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~ 434 (1159)
T PLN02882 355 EKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEI 434 (1159)
T ss_pred ccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHH
Confidence 01111 2458999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccchhh-HHHHHHHHhccCCCccccccCCCcccccccCC----C----------------------
Q psy4049 194 INDVAHWLDKNEDVVKPKKF-YNQLRNMCSEIENDISVSRPKARVHWGIPVPD----D---------------------- 246 (528)
Q Consensus 194 ~~~~~~~~~~~~~~~~p~~~-~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~----~---------------------- 246 (528)
++.+.+..+.. .|.|+.. .+++.+||++ .+|||||||| +||+|||. +
T Consensus 435 k~~~l~~~~~i--~w~P~~~~~~r~~~wl~~-~~DW~ISRqR---~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~ 508 (1159)
T PLN02882 435 KDRLLENNKQT--YWVPDYVKEKRFHNWLEN-ARDWAVSRSR---FWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVT 508 (1159)
T ss_pred HHHHHHhhCCc--EEECCcchhhHHHHHHhc-Ccccceeecc---ccCCccceEEeCCCCeEEecCcHHHHHHHhCCchh
Confidence 99998876554 5999999 4899999999 9999999997 89999992 0
Q ss_pred -------------------------CCCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHH
Q psy4049 247 -------------------------DTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAF 295 (528)
Q Consensus 247 -------------------------~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~ 295 (528)
..+|+|+||||++++++.++||. |.. ||.|++++|+||++ +||++.+
T Consensus 509 dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~R--gWf~~ll 586 (1159)
T PLN02882 509 DLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTR--GWFYTLM 586 (1159)
T ss_pred hccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhh--hHHHHHH
Confidence 01799999999999999999984 556 99999999999999 7887777
Q ss_pred Hhh---cCCCCCcEEEEeeeeee-CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCC-CCCCCCcCHHHHHHHHHHH
Q psy4049 296 LIA---AGLEPPKSFLVHSHWTV-DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGT-NHSDSNYSETKAKNILNAE 370 (528)
Q Consensus 296 ~~~---~~~~~~~~~~~hg~~~~-~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~-~~~~~~f~~~~~~~~~~~~ 370 (528)
+.+ .|.+||+++++|||++. +|+|||||+||+|+|.+++++||+|++|||+++... ..+|++|+.+.+.+..+ +
T Consensus 587 ~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~-~ 665 (1159)
T PLN02882 587 VLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVK-D 665 (1159)
T ss_pred HHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHH-H
Confidence 655 37799999999999976 899999999999999999999999999999996543 25789999999886543 3
Q ss_pred HHHHHHHHHHHHHhcccC-----CCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy4049 371 LANTLGNLLNRCLSKSIN-----PDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL 445 (528)
Q Consensus 371 l~~~l~n~~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~ 445 (528)
+.++++|++..+.....+ ..+..|.. ...+. ......|+|++++++.+.+.+.++|++|++++|+..|++|+
T Consensus 666 ~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~-~~~~~--~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv 742 (1159)
T PLN02882 666 VFLPWYNAYRFLVQNAKRLEVEGGAPFVPLD-LAKLQ--NSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFI 742 (1159)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccccCCCccc-ccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455677765444332211 11111110 00000 01246799999999999999999999999999999999999
Q ss_pred H-HHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC-------CCccccccccc--
Q psy4049 446 H-LANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI-------PTNERLWDNMR-- 515 (528)
Q Consensus 446 ~-~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~-------~~~~~~w~~~~-- 515 (528)
. .+|+|++..+||....++ ...+.++++++.++|+.++.+|+||||+++|+||+.|+. +.....||..+
T Consensus 743 ~~lsN~YIe~~Kprl~~~~~-~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~ 821 (1159)
T PLN02882 743 DNLTNIYVRFNRKRLKGRTG-EEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEG 821 (1159)
T ss_pred HHHhHHHHHhCCHhhhCCCC-hHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchh
Confidence 7 699999999997654433 345778899999999999999999999999999999974 22347898865
Q ss_pred ccCccch
Q psy4049 516 FSDNDMF 522 (528)
Q Consensus 516 ~~~~~~~ 522 (528)
.+|.++.
T Consensus 822 ~~d~~le 828 (1159)
T PLN02882 822 ELDERIE 828 (1159)
T ss_pred hcchhHH
Confidence 4455543
No 22
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-79 Score=654.33 Aligned_cols=492 Identities=21% Similarity=0.303 Sum_probs=408.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH-HcCCC------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI-KHKLE------------ 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~-~~g~~------------ 69 (528)
+++|+...+|||+||.+||||+.|-++.|++.||..|+ ||+|.+++||||||+|||.+++ +.|+.
T Consensus 48 ~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~--G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~ef 125 (933)
T COG0060 48 KPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQ--GYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEF 125 (933)
T ss_pred CCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhccc--CCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHH
Confidence 46788899999999999999999999999999999999 9999999999999999997765 44532
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCc--ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccccc
Q psy4049 70 ---TIDFCNKISDQYKLMFKTYDI--EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRP 144 (528)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~ 144 (528)
.++++..+.+.+++++++||+ ++|+-|.|+++.|++.+.++|.+|+++|++|++.++++||+.|++.|++.+++.
T Consensus 126 r~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey 205 (933)
T COG0060 126 REKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEY 205 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcc
Confidence 156778888999999999998 466888999999999999999999999999999999999999999999999986
Q ss_pred CCCch----------h-----hhh----------------------------------------hh--------------
Q psy4049 145 DEKNE----------E-----ESF----------------------------------------LL-------------- 155 (528)
Q Consensus 145 ~~~~~----------~-----~~~----------------------------------------~~-------------- 155 (528)
....+ . ..+ +.
T Consensus 206 ~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~v 285 (933)
T COG0060 206 GDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEV 285 (933)
T ss_pred cccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEE
Confidence 42100 0 000 00
Q ss_pred -------------------h----------------------------------------cc-----CCCCCCC------
Q psy4049 156 -------------------E----------------------------------------HQ-----IRPDEKN------ 165 (528)
Q Consensus 156 -------------------~----------------------------------------~~-----~~~~~~g------ 165 (528)
+ .. .++|..|
T Consensus 286 l~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~ 365 (933)
T COG0060 286 LETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA 365 (933)
T ss_pred eEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccc
Confidence 0 00 0112211
Q ss_pred --------------------------------CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhh
Q psy4049 166 --------------------------------EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKF 213 (528)
Q Consensus 166 --------------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~ 213 (528)
++.|+||+|++|+.+|..+|||++++++++.+.+-+++. .|.|+..
T Consensus 366 ~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v--~w~P~~~ 443 (933)
T COG0060 366 PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKV--NWVPDWG 443 (933)
T ss_pred hhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcc--eEEChhH
Confidence 366999999999999999999999999999999777754 5999999
Q ss_pred HHHHHHHHhccCCCccccccCCCcccccccCC------------------------------------------------
Q psy4049 214 YNQLRNMCSEIENDISVSRPKARVHWGIPVPD------------------------------------------------ 245 (528)
Q Consensus 214 ~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~------------------------------------------------ 245 (528)
.+++.+|+++ .+|||||||| .||+|||.
T Consensus 444 ~~R~~~mve~-r~DW~ISRQR---~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g 519 (933)
T COG0060 444 KNRFGNMVEN-RPDWCISRQR---YWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDG 519 (933)
T ss_pred HHHHHHHHcC-CCcceeeccc---cCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCc
Confidence 9999999998 9999999999 79999992
Q ss_pred ----CCCCeEEEeccchhhhhhhhcCCCCCC-CCc---cceEeeecccchhhhHHHHHHhh---cCCCCCcEEEEeeee-
Q psy4049 246 ----DDTQTIYVWLDALMNYLTVSGYPDFHT-WPP---HIQILGKDILKFHGIYWPAFLIA---AGLEPPKSFLVHSHW- 313 (528)
Q Consensus 246 ----~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~---di~~~G~D~~~~h~~~~~a~~~~---~~~~~~~~~~~hg~~- 313 (528)
...+||||||||+.++.+.++ +.-+. ||. |++++|.||.+ |||+++++.+ .|.+|++++++|||+
T Consensus 520 ~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~~~~~~~~aD~~lEGsDQ~R--GWF~Ssl~~s~a~~~~aPYk~vltHGfvl 596 (933)
T COG0060 520 KEYRRVPDVLDVWFDSGSTPYAVLH-PRENLKFPALFADFYLEGSDQTR--GWFYSSLLTSTALFGRAPYKNVLTHGFVL 596 (933)
T ss_pred ceeEecCcceEEEEcCCCCcccccC-CcccccCccccCcEEEEeccccc--hhHHHHHHHHHHHcCCchHHHHhhcccEE
Confidence 035799999999999988887 32112 555 99999999999 9999998876 477899999999988
Q ss_pred eeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q psy4049 314 TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVN 393 (528)
Q Consensus 314 ~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~ 393 (528)
.-+|+|||||+||+|+|.|++++||+|+||+|++++. +..|+.|+++.+++. ++..++|+|+++++...+.+.+...
T Consensus 597 De~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl~~fdp~~ 673 (933)
T COG0060 597 DEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNLDDFDPKK 673 (933)
T ss_pred CCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecC-chhccccCHHHHHHH--HHHHHHHHHHHHHHHHhccCCCccc
Confidence 5789999999999999999999999999999999876 799999999997765 3468899999987776543332211
Q ss_pred CCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-H-HHhHhhhccCccccccc-CcHHHHH
Q psy4049 394 PLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL-H-LANKFIDTTKPWTLRKE-NKIEELN 470 (528)
Q Consensus 394 ~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~-~-~~n~y~~~~k~~~l~~~-~~~~~~~ 470 (528)
... .. .++..+|+|++.+++.+..++.++|++|+|+++++.|++|+ . .+|+|++..|++ +..+ .+...+.
T Consensus 674 ~~~---~~---~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr-~y~~~~~s~~rr 746 (933)
T COG0060 674 DAV---LP---EELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDR-LYTEAADSPDRR 746 (933)
T ss_pred ccc---ch---hhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHH-hhhcCCCCHHHH
Confidence 000 00 12457899999999999999999999999999999999998 3 688899988874 4433 2344566
Q ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC-----ccccccccc
Q psy4049 471 LVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT-----NERLWDNMR 515 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~-----~~~~w~~~~ 515 (528)
++..+++.+|..++++++||+||++|+||+.|.... ...+||+.+
T Consensus 747 aa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~~ 796 (933)
T COG0060 747 AAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVD 796 (933)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCCCCceeEeccCCccc
Confidence 777888899999999999999999999999997763 246787755
No 23
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.7e-78 Score=673.11 Aligned_cols=493 Identities=20% Similarity=0.266 Sum_probs=402.5
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcC----CCH--------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHK----LET-------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g----~~~-------- 70 (528)
+++|+|..||||+||.|||||++++++.|+++||.||+ |++|.+++|||+||+||+.++++.. +..
T Consensus 53 ~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~--G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f 130 (961)
T PRK13804 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQML--GFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEF 130 (961)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhc--CCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHH
Confidence 46799999999999999999999999999999999999 9999999999999999998876543 332
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcc--cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccccc
Q psy4049 71 ----IDFCNKISDQYKLMFKTYDIE--YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRP 144 (528)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~ 144 (528)
++++.++.+.+++++++||+. +++.+.|+++.|...++++|.+|+++|+||++.++++|||.|++.|++.+|+.
T Consensus 131 ~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey 210 (961)
T PRK13804 131 RKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEY 210 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhccc
Confidence 458888999999999999997 55888999999999999999999999999999999999999999999988765
Q ss_pred CCCc-----------h-------------------------------h--------------------hhhhh-------
Q psy4049 145 DEKN-----------E-------------------------------E--------------------ESFLL------- 155 (528)
Q Consensus 145 ~~~~-----------~-------------------------------~--------------------~~~~~------- 155 (528)
.+.. + . +.+++
T Consensus 211 ~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~ 290 (961)
T PRK13804 211 HDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAES 290 (961)
T ss_pred ccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHH
Confidence 4210 0 0 00000
Q ss_pred -------------------------------hc-----c-----------------------------------CC----
Q psy4049 156 -------------------------------EH-----Q-----------------------------------IR---- 160 (528)
Q Consensus 156 -------------------------------~~-----~-----------------------------------~~---- 160 (528)
+. . +.
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~ 370 (961)
T PRK13804 291 VAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIP 370 (961)
T ss_pred HHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCccc
Confidence 00 0 00
Q ss_pred --CCC-------------------CC---------------------------CCcccccCCCCCcEEeeeceeeeeccc
Q psy4049 161 --PDE-------------------KN---------------------------EGQYVSIESNQPVEWVEEQNYMFKLSN 192 (528)
Q Consensus 161 --~~~-------------------~g---------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~ 192 (528)
+|. .| +.+|+|++||+|++++..+|||+++++
T Consensus 371 ~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~ 450 (961)
T PRK13804 371 VTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDK 450 (961)
T ss_pred ccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCC
Confidence 010 01 256899999999999999999999998
Q ss_pred -------cHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC--------------------
Q psy4049 193 -------YINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD-------------------- 245 (528)
Q Consensus 193 -------~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~-------------------- 245 (528)
+++.+.+.++.. .|.|+..++++.+|+++ ++|||||||| +||+|||.
T Consensus 451 ~~~~~~~~k~~al~~i~~v--~~~P~~~~~r~~~~i~~-~~DWcISRQR---~WG~PIP~~~~~~~~~~~~~~~~~~~~~ 524 (961)
T PRK13804 451 DLGDGTTLRSRALDAIDKT--RFVPAAGQNRLYNMIED-RPDWVISRQR---AWGVPIPIFVAEDGEILMDEEVNARIAD 524 (961)
T ss_pred cccchHHHHHHHHHHHhcc--EEECHHHHHHHHHHHhc-Cccceeeeec---cCCceeeEEEcCCCCEeccHHHHHHHHH
Confidence 999999998766 59999999999999998 9999999998 89999994
Q ss_pred ------------------------------CCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHH
Q psy4049 246 ------------------------------DDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAF 295 (528)
Q Consensus 246 ------------------------------~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~ 295 (528)
.+.+||||||||++++...++...-..||.|++++|+||++ +||+.++
T Consensus 525 ~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~~~~~PaD~~~eG~Di~r--gWF~s~l 602 (961)
T PRK13804 525 AFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYLEGSDQHR--GWFNSSL 602 (961)
T ss_pred HHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccccCCcccCCCceEEEEEccccc--HHHHHHH
Confidence 02579999999998876554322111289999999999999 7887777
Q ss_pred Hhhc---CCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHH
Q psy4049 296 LIAA---GLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAEL 371 (528)
Q Consensus 296 ~~~~---~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l 371 (528)
+.+. |.+||+++++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++. ++++|++|+++.+.+. +++
T Consensus 603 l~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~-~~~~D~~fs~~~l~~~--~~~ 679 (961)
T PRK13804 603 LESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASV-DYSDDQRIGKEILKQV--SET 679 (961)
T ss_pred HHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhC-CCCCCcccCHHHHHHH--HHH
Confidence 7765 457899999999996 59999999999999999999999999999999974 5799999999998774 456
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHh
Q psy4049 372 ANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLAN 449 (528)
Q Consensus 372 ~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n 449 (528)
.++++|+++++.+.+.+.......... ......|+|++.+++++.+++.++|++|+++++++.+++|+ ..+|
T Consensus 680 ~~kL~N~~rf~l~nl~~~~~~~~~~~~------~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn 753 (961)
T PRK13804 680 YRKLRNTLRWLLGNLAHFDPGEDVVAY------ADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSA 753 (961)
T ss_pred HHHHHHHHHHHHhccccCCcccccCCh------hhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 889999997766544332111000000 12356799999999999999999999999999999999998 3689
Q ss_pred HhhhccCcccccccC-cHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC----CCccccccccc
Q psy4049 450 KFIDTTKPWTLRKEN-KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI----PTNERLWDNMR 515 (528)
Q Consensus 450 ~y~~~~k~~~l~~~~-~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~----~~~~~~w~~~~ 515 (528)
.|++..|+| +..+. ....+.++..++..+++.++++|+|||||++|+||+.|+. ......||..+
T Consensus 754 ~Yle~~K~r-l~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~ 823 (961)
T PRK13804 754 FYFDIRKDA-LYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETP 823 (961)
T ss_pred HHHHHhhHh-hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCc
Confidence 999999997 43321 1233455677788889999999999999999999999983 12346888765
No 24
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=3.9e-78 Score=675.30 Aligned_cols=493 Identities=19% Similarity=0.265 Sum_probs=409.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-CCC------H-----
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-KLE------T----- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-g~~------~----- 70 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|++++|||+||+||+.++++. |++ +
T Consensus 35 ~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~--G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~ 112 (861)
T TIGR00392 35 KPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQ--GFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEE 112 (861)
T ss_pred CCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcC--CCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHH
Confidence 56799999999999999999999999999999999999 999999999999999999999765 654 3
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcc--cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 71 -----IDFCNKISDQYKLMFKTYDIE--YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
++++.++.+.+++++++||+. +++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++.|++.+++
T Consensus 113 f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~ 192 (861)
T TIGR00392 113 FREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVE 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHh
Confidence 478999999999999999995 5688899999999999999999999999999999999999999999999997
Q ss_pred cCC----Cc-----------hhhh--------hh----------------------------------------------
Q psy4049 144 PDE----KN-----------EEES--------FL---------------------------------------------- 154 (528)
Q Consensus 144 ~~~----~~-----------~~~~--------~~---------------------------------------------- 154 (528)
..+ .. +.+. ++
T Consensus 193 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~ 272 (861)
T TIGR00392 193 YKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKL 272 (861)
T ss_pred cccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHH
Confidence 543 10 0000 00
Q ss_pred -------------------h---------hccC------C----------------------------------------
Q psy4049 155 -------------------L---------EHQI------R---------------------------------------- 160 (528)
Q Consensus 155 -------------------~---------~~~~------~---------------------------------------- 160 (528)
. +..+ +
T Consensus 273 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~ 352 (861)
T TIGR00392 273 YNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLS 352 (861)
T ss_pred HHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCccc
Confidence 0 0000 0
Q ss_pred -CCCCC---------------------------------------------CCcccccCCCCCcEEeeeceeeeeccccH
Q psy4049 161 -PDEKN---------------------------------------------EGQYVSIESNQPVEWVEEQNYMFKLSNYI 194 (528)
Q Consensus 161 -~~~~g---------------------------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 194 (528)
+|.+| +.+|+|++||++++++.++|||+++++++
T Consensus 353 ~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k 432 (861)
T TIGR00392 353 PVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIK 432 (861)
T ss_pred ccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHH
Confidence 01111 13489999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC---C-------------------------
Q psy4049 195 NDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD---D------------------------- 246 (528)
Q Consensus 195 ~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~---~------------------------- 246 (528)
+.+.++++.. .|.|+..++.+.+|+++ ++|||||||| +||+|||. .
T Consensus 433 ~~~l~~~~~i--~~~P~~~~~~~~~~l~~-l~DW~ISRqr---~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 506 (861)
T TIGR00392 433 DQMLEQIKKV--NWVPEWGEGRFGNWLEN-RPDWCISRQR---YWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDA 506 (861)
T ss_pred HHHHHHhCCc--EEECchHHHHHHHHHhC-CCcceeeccc---cCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCcc
Confidence 9999999765 59999999999999997 9999999997 89999994 1
Q ss_pred -------------------------CCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccc--hhhhHHHH
Q psy4049 247 -------------------------DTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILK--FHGIYWPA 294 (528)
Q Consensus 247 -------------------------~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~--~h~~~~~a 294 (528)
+.+|+||||||+++|++..+++. |+. ||.|++++|+||++ ||..++++
T Consensus 507 w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~ 586 (861)
T TIGR00392 507 WFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIG 586 (861)
T ss_pred ccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHH
Confidence 24599999999999999998864 566 89999999999999 67777776
Q ss_pred HHhhcCCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHH
Q psy4049 295 FLIAAGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELAN 373 (528)
Q Consensus 295 ~~~~~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~ 373 (528)
++. .+.+||+++++|||++ .+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+... ++++.+
T Consensus 587 ~~~-~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~-~~~~~n 663 (861)
T TIGR00392 587 TAL-FGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQV-VEKYRK 663 (861)
T ss_pred HHH-cCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHH-HHHHHH
Confidence 543 5788999999999997 58999999999999999999999999999999988 7899999999999765 445888
Q ss_pred HHHHHHHHHH--hcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHh
Q psy4049 374 TLGNLLNRCL--SKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LAN 449 (528)
Q Consensus 374 ~l~n~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n 449 (528)
.++|+++++. +.+.+.......... ..+...|++++.+++.+.+++.++|++|++++|++.+++|+. .+|
T Consensus 664 ~l~N~~~~~~~~~~l~~~~~~~~~~~~------~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n 737 (861)
T TIGR00392 664 IRWNTYRFLLTYANLDKFDPLFNSVAV------EKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSN 737 (861)
T ss_pred HHHHHHHHHHHHhccccCCcccccccc------ccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 8999888876 433222110000000 123567999999999999999999999999999999999986 589
Q ss_pred HhhhccCc--ccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC-----Cccccccccc
Q psy4049 450 KFIDTTKP--WTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP-----TNERLWDNMR 515 (528)
Q Consensus 450 ~y~~~~k~--~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~-----~~~~~w~~~~ 515 (528)
.|++..++ |....+ ...+ ++..++..+++.++.+|+|||||++|+||+.|+.. .....||..+
T Consensus 738 ~Yi~~~k~~lw~~~~~--~~~~-~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~ 807 (861)
T TIGR00392 738 WYIRIIRDRLYCEAKD--NDKR-AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVD 807 (861)
T ss_pred HHHHHhhHHhccCCCC--HHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCc
Confidence 99999877 543332 1122 56677789999999999999999999999999753 2457898775
No 25
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.1e-77 Score=666.30 Aligned_cols=493 Identities=21% Similarity=0.272 Sum_probs=400.5
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-------CCCHH----
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-------KLETI---- 71 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-------g~~~~---- 71 (528)
+++|+|+.||||+||.|||||+++.+++|+++||.||+ |++|.+++|||+||+||+.++++. +.++.
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~--G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~ 108 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQ--GKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRA 108 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc--CCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHH
Confidence 46799999999999999999999999999999999999 999999999999999999987432 23454
Q ss_pred ---HHHHHHHHHHHHHHhhcCc--ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCC
Q psy4049 72 ---DFCNKISDQYKLMFKTYDI--EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDE 146 (528)
Q Consensus 72 ---~~~~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~ 146 (528)
++++++.+.+++++++||+ ++|+.+.|+++.|...++++|.+|+++|+||++.++++|||.|++.+++.+++..+
T Consensus 109 ~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e 188 (974)
T PLN02843 109 KAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPE 188 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccC
Confidence 4577778888999999999 67788899999999999999999999999999999999999999999999888653
Q ss_pred C-c-----------hh---------h----hh------------------------------------------------
Q psy4049 147 K-N-----------EE---------E----SF------------------------------------------------ 153 (528)
Q Consensus 147 ~-~-----------~~---------~----~~------------------------------------------------ 153 (528)
. . +. . .+
T Consensus 189 ~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~ 268 (974)
T PLN02843 189 GHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRP 268 (974)
T ss_pred CccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEecccccccccccccccccc
Confidence 1 0 00 0 00
Q ss_pred ----------------------------------------hh---------hc------------------c--------
Q psy4049 154 ----------------------------------------LL---------EH------------------Q-------- 158 (528)
Q Consensus 154 ----------------------------------------~~---------~~------------------~-------- 158 (528)
+. +. +
T Consensus 269 ~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg 348 (974)
T PLN02843 269 GNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHG 348 (974)
T ss_pred ccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCC
Confidence 00 00 0
Q ss_pred ---------------CCCCCC---------------------------------------CCCcccccCCCCCcEEeeec
Q psy4049 159 ---------------IRPDEK---------------------------------------NEGQYVSIESNQPVEWVEEQ 184 (528)
Q Consensus 159 ---------------~~~~~~---------------------------------------g~~~~~~~~~g~~~~~~~~~ 184 (528)
.++|.+ .+.+|+|++|++|++++..+
T Consensus 349 ~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~ 428 (974)
T PLN02843 349 QEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATE 428 (974)
T ss_pred HHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecC
Confidence 000111 13568999999999999999
Q ss_pred eeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCC------------------
Q psy4049 185 NYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD------------------ 246 (528)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~------------------ 246 (528)
|||++++++++.+.+.++.. .|.|+..++++.+|+++ ++|||||||| +||+|||..
T Consensus 429 QWFi~~~~~k~~al~~~~~v--~~~P~~~~~r~~~~i~~-~~DWcISRQr---~WG~pIP~~~~~~~~~~~~~~~~i~~~ 502 (974)
T PLN02843 429 QWFASVEGFRQAALDAIDKV--KWIPAQGENRIRAMVSG-RSDWCISRQR---TWGVPIPVFYHVETKEPLMNEETIAHV 502 (974)
T ss_pred ceeEeCHHHHHHHHHHHhcc--EEEChHHHHHHHHHHhc-Ccceeeeecc---ccccEEEEEEEcCCCCEeechhhHHHH
Confidence 99999999999999999875 59999999999999999 9999999997 899999910
Q ss_pred ----------------------------------CCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc--hhh
Q psy4049 247 ----------------------------------DTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK--FHG 289 (528)
Q Consensus 247 ----------------------------------~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~--~h~ 289 (528)
+.+|+||||||++++...++.. ... ||.|++++|+||++ ||.
T Consensus 503 ~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~-~~~~~PaDl~~eG~Di~rgWf~s 581 (974)
T PLN02843 503 KSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSR-EGLSYPADLYLEGSDQHRGWFQS 581 (974)
T ss_pred HHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhccc-cccCCCceeeeeeccccchHHHH
Confidence 2379999999999887665432 223 89999999999999 555
Q ss_pred hHHHHHHhhcCCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhh---------hcCchHHHHHHHhcCCCCCCCCcC
Q psy4049 290 IYWPAFLIAAGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLS---------DFTSCGLRYFLLREGTNHSDSNYS 359 (528)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~---------~~~~d~lR~~~~~~~~~~~~~~f~ 359 (528)
.++++. .+.|..||+++++||+++ .+|+|||||+||+|+|.++++ +||+|++|||+++ .++++|++|+
T Consensus 582 ~l~~~~-~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s 659 (974)
T PLN02843 582 SLLTSV-ATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIG 659 (974)
T ss_pred HHHHHH-HhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccCCCceeC
Confidence 555554 346778999999999885 589999999999999999999 7999999999996 4578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy4049 360 ETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVD 439 (528)
Q Consensus 360 ~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~ 439 (528)
.+.+++.. +..++++|+++++...+.+.. +. ...+ .......|+|++.+++++.+++.++|++|+|++|++
T Consensus 660 ~~~l~~~~--~~~~kl~n~~rf~lgnl~~~~---~~---~~~~-~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~ 730 (974)
T PLN02843 660 PQILKQMS--DIYRKLRGTLRYLLGNLHDWK---PD---NAVP-YEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQ 730 (974)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhCccCCC---cc---cccC-ccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99998763 357789999877765433221 10 0000 012346799999999999999999999999999999
Q ss_pred HHHHHH--HHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC--------Cccc
Q psy4049 440 SIILVL--HLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP--------TNER 509 (528)
Q Consensus 440 ~l~~~~--~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~--------~~~~ 509 (528)
.|++|+ ..+|.|++..|+|..........+.++..++..+++.++++|+|||||++|+||+.|+.. ....
T Consensus 731 ~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~ 810 (974)
T PLN02843 731 ILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEA 810 (974)
T ss_pred HHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEec
Confidence 999985 589999999999854332123334455666778889999999999999999999999742 2346
Q ss_pred cccccc
Q psy4049 510 LWDNMR 515 (528)
Q Consensus 510 ~w~~~~ 515 (528)
.||..+
T Consensus 811 ~~P~~~ 816 (974)
T PLN02843 811 GWPTPN 816 (974)
T ss_pred CCCCCc
Confidence 888765
No 26
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2e-77 Score=671.10 Aligned_cols=487 Identities=18% Similarity=0.301 Sum_probs=394.8
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH-cCCC------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-HKLE------------ 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~-~g~~------------ 69 (528)
+++|++..||||+||.|||||+++++++|+++||.||+ ||+|.+++|||+||+||+..+++ .|++
T Consensus 101 ~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~--G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~ 178 (1205)
T PTZ00427 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQC--GFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDV 178 (1205)
T ss_pred CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcC--CCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHH
Confidence 34577899999999999999999999999999999999 99999999999999999998865 3321
Q ss_pred ----HHHHHHHHHHHHHHHHhhcC--cccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 70 ----TIDFCNKISDQYKLMFKTYD--IEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~~l~--i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
+.+++.++.+.+++++++|| +++|+.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|.|++.+|.
T Consensus 179 f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~ 258 (1205)
T PTZ00427 179 YNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELN 258 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhh
Confidence 26788999999999999999 678899999999999999999999999999999999999999999999999872
Q ss_pred --cCC--------------------------------------------------------------Cc-----------
Q psy4049 144 --PDE--------------------------------------------------------------KN----------- 148 (528)
Q Consensus 144 --~~~--------------------------------------------------------------~~----------- 148 (528)
.++ ..
T Consensus 259 ~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwT 338 (1205)
T PTZ00427 259 LNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWT 338 (1205)
T ss_pred cccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchh
Confidence 110 00
Q ss_pred ----------hh-------h--------------------------hh------------------hh----------hc
Q psy4049 149 ----------EE-------E--------------------------SF------------------LL----------EH 157 (528)
Q Consensus 149 ----------~~-------~--------------------------~~------------------~~----------~~ 157 (528)
+. . .+ +. ++
T Consensus 339 Lpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~ 418 (1205)
T PTZ00427 339 LPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKER 418 (1205)
T ss_pred hhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCc
Confidence 00 0 00 00 00
Q ss_pred ------------------------------------cC----------CCCCCC--------------------------
Q psy4049 158 ------------------------------------QI----------RPDEKN-------------------------- 165 (528)
Q Consensus 158 ------------------------------------~~----------~~~~~g-------------------------- 165 (528)
.. ++|.+|
T Consensus 419 ~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk 498 (1205)
T PTZ00427 419 AYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLK 498 (1205)
T ss_pred eeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHH
Confidence 01 012222
Q ss_pred ------------CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhh-HHHHHHHHhccCCCccccc
Q psy4049 166 ------------EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKF-YNQLRNMCSEIENDISVSR 232 (528)
Q Consensus 166 ------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~l~~~~~dw~isR 232 (528)
+.+|+|++||+|++++..+|||++++++++.+.+..+.. .|.|+.. .+++.+||++ .+||||||
T Consensus 499 ~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i--~w~P~~~~~~r~~~wl~n-~~DWcISR 575 (1205)
T PTZ00427 499 NENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETT--YWIPAHIKEKKFHNWIKD-AKDWCISR 575 (1205)
T ss_pred hCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCcc--EEeCchhhHhHHHHHHhc-Cccceeee
Confidence 255899999999999999999999999998887765443 5999998 5899999998 99999999
Q ss_pred cCCCcccccccCC----C------------------------------------------------CCCeEEEeccchhh
Q psy4049 233 PKARVHWGIPVPD----D------------------------------------------------DTQTIYVWLDALMN 260 (528)
Q Consensus 233 ~~~~~~WG~~ip~----~------------------------------------------------~~~~~~~wfds~~~ 260 (528)
|| +||+|||. + ..+|+|+||||+++
T Consensus 576 qR---~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~ 652 (1205)
T PTZ00427 576 NR---YWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSM 652 (1205)
T ss_pred cc---ccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCC
Confidence 97 99999992 0 01389999999999
Q ss_pred hhhhhcCCC------CCC-CCccceEeeecccchhhhHHHHHHhh---cCCCCCcEEEEeeeee-eCCCcccccCCCccC
Q psy4049 261 YLTVSGYPD------FHT-WPPHIQILGKDILKFHGIYWPAFLIA---AGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVD 329 (528)
Q Consensus 261 ~~~~~~~~~------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~---~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~ 329 (528)
+++.++||. |+. ||+|+.++|.||++ +||+..++.+ .|..||+++++||+++ .+|+|||||+||+|+
T Consensus 653 p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~r--gWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvID 730 (1205)
T PTZ00427 653 PYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTR--GWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPD 730 (1205)
T ss_pred hHHHhCCCcccchhhHhccCCceEEEEecchhc--cHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCC
Confidence 999999863 556 89999999999999 8887777655 4678999999999996 599999999999999
Q ss_pred cchhhhhcCchHHHHHHHhcCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CCc--ccchhhhcc
Q psy4049 330 PMSKLSDFTSCGLRYFLLREGT-NHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVN-PLV--NRECYEVMF 405 (528)
Q Consensus 330 ~~~~~~~~~~d~lR~~~~~~~~-~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~-~~~--~~~~~~~~~ 405 (528)
|.+++++||+|++|||+++... ..+|++|+++.+.+..+ .+.++++|.++++...+....... ..+ ++... ..
T Consensus 731 P~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r-~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~--~~ 807 (1205)
T PTZ00427 731 PLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVK-SFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYI--YK 807 (1205)
T ss_pred HHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHH-HHHHHHHHHHHHHHhccccccccccccCCcCcccc--cc
Confidence 9999999999999999997654 36899999999876544 367788888765554221111000 000 00000 01
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHH
Q psy4049 406 TKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH-LANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICG 484 (528)
Q Consensus 406 ~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~-~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~ 484 (528)
.....|+|++++++.+.+.+.++|++|++++|+..|++|+. .+|+|++..|++ +..+.......++++++.++|+.++
T Consensus 808 ~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~r-l~~~~~~~~~~~a~~tL~~vL~~~~ 886 (1205)
T PTZ00427 808 NDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDR-MRGSLGEENCLQSLCTTYRTLHLFT 886 (1205)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchh-hccCCCcHHHHHHHHHHHHHHHHHH
Confidence 13567999999999999999999999999999999999997 799999988763 3333112345678899999999999
Q ss_pred HcccccchHHHHHHHHHcC
Q psy4049 485 IGLQPIVPKLADKLLTRLG 503 (528)
Q Consensus 485 ~ll~P~~P~~~e~l~~~l~ 503 (528)
+||+|||||++|+||+.|+
T Consensus 887 ~LLaPf~PfiaEeiyq~L~ 905 (1205)
T PTZ00427 887 VLMAPFTPFITEYIYQQLR 905 (1205)
T ss_pred HHccccchHHHHHHHHHhh
Confidence 9999999999999999995
No 27
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.2e-73 Score=638.18 Aligned_cols=478 Identities=18% Similarity=0.198 Sum_probs=390.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcC---------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHK--------------- 67 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g--------------- 67 (528)
+++|+|+.||||+||.|||||+++++++|+++||+||+ |++|++++|||+||+||+..|++..
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~--G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~ 101 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMK--GKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHA 101 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhc--CCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhcc
Confidence 57899999999999999999999999999999999999 9999999999999999998876621
Q ss_pred ---------CCHHHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcc
Q psy4049 68 ---------LETIDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESF 136 (528)
Q Consensus 68 ---------~~~~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~ 136 (528)
.+|.++++++...+++++++||+++| +.+.|+++.|.++++++|.+|+++|+||+++++++|||.|++.
T Consensus 102 i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~ 181 (938)
T TIGR00395 102 IPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNP 181 (938)
T ss_pred CCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCC
Confidence 34678899999999999999999876 6667999999999999999999999999999999999999999
Q ss_pred ccccccccCCCch--------------------------------------hhh----------------------h---
Q psy4049 137 LLEHQIRPDEKNE--------------------------------------EES----------------------F--- 153 (528)
Q Consensus 137 l~~~~v~~~~~~~--------------------------------------~~~----------------------~--- 153 (528)
++++++...+... ... +
T Consensus 182 lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~ 261 (938)
T TIGR00395 182 VEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKL 261 (938)
T ss_pred CchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhccc
Confidence 9999886542100 000 0
Q ss_pred ------------hh---------------------------------------------hcc-------C------C---
Q psy4049 154 ------------LL---------------------------------------------EHQ-------I------R--- 160 (528)
Q Consensus 154 ------------~~---------------------------------------------~~~-------~------~--- 160 (528)
+. +-. + .
T Consensus 262 ~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i 341 (938)
T TIGR00395 262 KYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPV 341 (938)
T ss_pred ceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCc
Confidence 00 000 0 0
Q ss_pred ----CCC------------------------------------------------CCC----------------------
Q psy4049 161 ----PDE------------------------------------------------KNE---------------------- 166 (528)
Q Consensus 161 ----~~~------------------------------------------------~g~---------------------- 166 (528)
++. .|.
T Consensus 342 ~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~ 421 (938)
T TIGR00395 342 PLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVM 421 (938)
T ss_pred cceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEe
Confidence 000 010
Q ss_pred ----CcccccCCCCCcEEe-eeceeeeeccc--cHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccc
Q psy4049 167 ----GQYVSIESNQPVEWV-EEQNYMFKLSN--YINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHW 239 (528)
Q Consensus 167 ----~~~~~~~~g~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~W 239 (528)
..++|.+||.+++++ ..+|||+++++ +++.+.++++.. .|.|+..++.+.+|+++ ++|||||||+ +|
T Consensus 422 ~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~--~~~P~~~~~~~~~~l~~-l~DW~ISRqr---~W 495 (938)
T TIGR00395 422 YEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGM--RIIPEEVKNAFEGKIDW-LKDWACCRRY---GL 495 (938)
T ss_pred eecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcC--EEeCHHHHHHHHHHHhh-hhhccccccc---cc
Confidence 225688999999987 99999999994 999999999876 59999999999999997 9999999996 89
Q ss_pred ccccCCCC--------CCeEEEeccchhhhhhhhc-------------------------CC---------CCCC-CCcc
Q psy4049 240 GIPVPDDD--------TQTIYVWLDALMNYLTVSG-------------------------YP---------DFHT-WPPH 276 (528)
Q Consensus 240 G~~ip~~~--------~~~~~~wfds~~~~~~~~~-------------------------~~---------~~~~-~~~d 276 (528)
|+|||.++ ..++|+||++...++...+ ++ +|+. ||.|
T Consensus 496 GtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D 575 (938)
T TIGR00395 496 GTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLD 575 (938)
T ss_pred CcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCce
Confidence 99999643 2567778877665543211 11 1555 8999
Q ss_pred ceEeeecccchhhhHHHHHHhhc-CC-CCCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCC
Q psy4049 277 IQILGKDILKFHGIYWPAFLIAA-GL-EPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHS 354 (528)
Q Consensus 277 i~~~G~D~~~~h~~~~~a~~~~~-~~-~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~ 354 (528)
+|++|+||++||++||..+..+. +. +.|+.+++|||++.+|+|||||+||+|+|.+++++||+|++|||+++.+++++
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~ 655 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQ 655 (938)
T ss_pred EEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC
Confidence 99999999999999997666553 32 24589999999999999999999999999999999999999999998888899
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccH
Q psy4049 355 DSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNF 434 (528)
Q Consensus 355 ~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~ 434 (528)
|++|+++.+.+..+. .++++|++.++.... +. .... .....|+|++.+++.+.+++.++|++|++
T Consensus 656 D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~-~~--~~~~----------~~~~~D~wlls~l~~~i~~v~~a~e~~~~ 720 (938)
T TIGR00395 656 DADWKESEVEGTILR--LERLYEFAEEITKES-NL--ETGE----------ETSFIDRWLESRMNAAIKETYEAMENFQT 720 (938)
T ss_pred CCCcCHHHHHHHHHH--HHHHHHHHHHHHhhc-cc--CCCc----------cCChHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 999999999887553 678888888865421 10 0000 12467999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC--ccccc
Q psy4049 435 YKGV-DSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT--NERLW 511 (528)
Q Consensus 435 ~~~~-~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~--~~~~w 511 (528)
+.|+ ..+++|++.+|.|+...+. .. ..++.++++.+++||+||+||++|+||+.|+... ....|
T Consensus 721 ~~Al~~~l~~~~~~~n~Yl~~~~~----------~~---~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~~sv~~~~w 787 (938)
T TIGR00395 721 RKAVKYALFDLQADVDWYRRRGGV----------NH---KDVLARYLETWIKLLAPFAPHFAEEMWEEVGNEGFVSLAKF 787 (938)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc----------hH---HHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCCeEEecCC
Confidence 9999 7799999989988764221 11 2357789999999999999999999999997543 45789
Q ss_pred ccccc
Q psy4049 512 DNMRF 516 (528)
Q Consensus 512 ~~~~~ 516 (528)
|..+.
T Consensus 788 P~~~~ 792 (938)
T TIGR00395 788 PEASE 792 (938)
T ss_pred CCCCc
Confidence 98763
No 28
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.6e-73 Score=577.09 Aligned_cols=321 Identities=21% Similarity=0.349 Sum_probs=296.5
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc---------CCCH----
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH---------KLET---- 70 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~---------g~~~---- 70 (528)
++++|++||||+||.|||||+++++++|+++||+|++ |++|++++|+|+||+||+..|+++ +.++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~--G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~ 78 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMK--GYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFL 78 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhc--CCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHH
Confidence 5799999999999999999999999999999999999 999999999999999999998765 3444
Q ss_pred ---HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccC
Q psy4049 71 ---IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPD 145 (528)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~ 145 (528)
+++++++.+++++++++|||++| .+++|+++.|.+.++++|.+|+++|+||+++++++||+.|++++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev--- 155 (382)
T cd00817 79 EKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV--- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh---
Confidence 46899999999999999999877 9999999999999999999999999999999999999999999998763
Q ss_pred CCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccC
Q psy4049 146 EKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIE 225 (528)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~ 225 (528)
|++||++++++.++||||+++++++.+.++++.++..|.|+..++.+.+||++ +
T Consensus 156 -------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l 209 (382)
T cd00817 156 -------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLEN-I 209 (382)
T ss_pred -------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhh-C
Confidence 66899999999999999999999999999999866679999999999999998 9
Q ss_pred CCccccccCCCcccccccCC----C--------------------------------CCCeEEEeccchhhhhhhhcCCC
Q psy4049 226 NDISVSRPKARVHWGIPVPD----D--------------------------------DTQTIYVWLDALMNYLTVSGYPD 269 (528)
Q Consensus 226 ~dw~isR~~~~~~WG~~ip~----~--------------------------------~~~~~~~wfds~~~~~~~~~~~~ 269 (528)
+||||||++ .||+|+|. + +++|+||||||+++|++.++++.
T Consensus 210 ~Dw~ISR~~---~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~ 286 (382)
T cd00817 210 RDWCISRQL---WWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPE 286 (382)
T ss_pred ccceeeecc---ccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCC
Confidence 999999996 89999995 3 47999999999999999999864
Q ss_pred ----CCC-CCccceEeeecccchhhhHHHHHHhhc-CCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHH
Q psy4049 270 ----FHT-WPPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGL 342 (528)
Q Consensus 270 ----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~l 342 (528)
|+. ||.|+|++|+||++||+.++.++..++ |..|+.++++||+++ .+|+|||||+||+|+|.|+++++|+|++
T Consensus 287 ~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~ 366 (382)
T cd00817 287 ETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADAL 366 (382)
T ss_pred cchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHH
Confidence 666 999999999999999999988877766 555669999999997 7999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCc
Q psy4049 343 RYFLLREGTNHSDSNY 358 (528)
Q Consensus 343 R~~~~~~~~~~~~~~f 358 (528)
|||+++.++..+|.+|
T Consensus 367 R~~ll~~~~~~~D~~f 382 (382)
T cd00817 367 RFTLASAATQGRDINL 382 (382)
T ss_pred HHHHHhCCCccCCCCC
Confidence 9999988878888876
No 29
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=4.6e-72 Score=558.90 Aligned_cols=310 Identities=42% Similarity=0.806 Sum_probs=295.2
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
+++||+|+|||||++||||+++++++|+++||+|++ |++|.+++|+||||+||+.+|+++|++|+++++.+.+.|+++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~--G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~ 78 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLR--GYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDL 78 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhC--CCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCC
Q psy4049 85 FKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEK 164 (528)
Q Consensus 85 ~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (528)
+++|||++|.|++|+++.|.+.++++|++|.++|++|+++..++||+.|+++++
T Consensus 79 l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~-------------------------- 132 (319)
T cd00814 79 FKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP-------------------------- 132 (319)
T ss_pred HHHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee--------------------------
Confidence 999999999999999999999999999999999999999999999999999864
Q ss_pred CCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccC
Q psy4049 165 NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP 244 (528)
Q Consensus 165 g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip 244 (528)
+++.+++|||+++++++.+.++++..+..+.|+..++.+.+||+++++||||||+. ..||+|+|
T Consensus 133 --------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~--~~WGipvp 196 (319)
T cd00814 133 --------------EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDL--FDWGIPVP 196 (319)
T ss_pred --------------EEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccC--cccCeeCC
Confidence 57788999999999999999999988756889999999999999999999999994 28999999
Q ss_pred CCCCCeEEEeccchhhhhhhhcCCC--------CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeeee
Q psy4049 245 DDDTQTIYVWLDALMNYLTVSGYPD--------FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTV 315 (528)
Q Consensus 245 ~~~~~~~~~wfds~~~~~~~~~~~~--------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~~ 315 (528)
.++++++||||||+++|+++++++. |.. ||.++|++|+||++||+++|++++.++|.++|+.+++|||+++
T Consensus 197 ~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~ 276 (319)
T cd00814 197 LDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTV 276 (319)
T ss_pred CCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEE
Confidence 9999999999999999999988742 334 7999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCc
Q psy4049 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNY 358 (528)
Q Consensus 316 ~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f 358 (528)
+|+|||||+||+|++.|+++.+|+|++||++++.++..+|.+|
T Consensus 277 ~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 277 EGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999999999999999998999887
No 30
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.3e-71 Score=607.67 Aligned_cols=446 Identities=21% Similarity=0.308 Sum_probs=366.2
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++||+.+||||||.|||||+++++++|+++||+||+ |++|++++|||+||+|++.+|.+.|++|.++++++.+.++
T Consensus 31 ~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~--G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQ--GYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhc--CCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCC
Q psy4049 83 LMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIR 160 (528)
Q Consensus 83 ~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 160 (528)
+++++||+++| ++++|+++.|.+.++++|.+|+++|+||+++++++||+.|+++|++.++++.
T Consensus 109 ~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~--------------- 173 (805)
T PRK00390 109 KQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDG--------------- 173 (805)
T ss_pred HHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCC---------------
Confidence 99999999776 7899999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhC------------------------------CC----
Q psy4049 161 PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKN------------------------------ED---- 206 (528)
Q Consensus 161 ~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------------~~---- 206 (528)
.|++||.+++.+..+||||+++++.+.+.++++.. ..
T Consensus 174 ---------~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v 244 (805)
T PRK00390 174 ---------RCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEV 244 (805)
T ss_pred ---------eecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEE
Confidence 38899999999999999999998776665543210 00
Q ss_pred --------------cccch-------------------------------------------------------------
Q psy4049 207 --------------VVKPK------------------------------------------------------------- 211 (528)
Q Consensus 207 --------------~~~p~------------------------------------------------------------- 211 (528)
.+.|+
T Consensus 245 ~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~ 324 (805)
T PRK00390 245 FTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADY 324 (805)
T ss_pred EeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEecc
Confidence 00000
Q ss_pred -------------------------------------------------------------------hhHHHHHHHHhc-
Q psy4049 212 -------------------------------------------------------------------KFYNQLRNMCSE- 223 (528)
Q Consensus 212 -------------------------------------------------------------------~~~~~~~~~l~~- 223 (528)
.+++.+.+.|++
T Consensus 325 V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~ 404 (805)
T PRK00390 325 VLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEK 404 (805)
T ss_pred ccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHc
Confidence 001122222322
Q ss_pred ---------cCCCccccccCCCcccccccCC-------------------------------------------------
Q psy4049 224 ---------IENDISVSRPKARVHWGIPVPD------------------------------------------------- 245 (528)
Q Consensus 224 ---------~~~dw~isR~~~~~~WG~~ip~------------------------------------------------- 245 (528)
.++|||||||| +||+|||.
T Consensus 405 g~~~~~v~~~l~DW~ISRQR---~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (805)
T PRK00390 405 GLGKRKVNYRLRDWGISRQR---YWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK 481 (805)
T ss_pred CCCCCceEEECCCccccccc---cCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC
Confidence 28899999998 99999991
Q ss_pred ---CCCCeEEEeccchhhhhhhhcCCC----------CCC-CCccceEeeecccchhhh---HHHHHHhhc----CCCCC
Q psy4049 246 ---DDTQTIYVWLDALMNYLTVSGYPD----------FHT-WPPHIQILGKDILKFHGI---YWPAFLIAA----GLEPP 304 (528)
Q Consensus 246 ---~~~~~~~~wfds~~~~~~~~~~~~----------~~~-~~~di~~~G~D~~~~h~~---~~~a~~~~~----~~~~~ 304 (528)
.+.+||||||||. +|+....+|. ++. +|+|++++|.||+..|.+ ||.+.+... +..||
T Consensus 482 ~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pf 560 (805)
T PRK00390 482 PARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPF 560 (805)
T ss_pred CceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcch
Confidence 0357999999998 4444444431 455 799999999999855433 455555544 45789
Q ss_pred cEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4049 305 KSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLS 384 (528)
Q Consensus 305 ~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~ 384 (528)
+++++|||+ |||||+||+|+|.+++++||+|++|||+++.+++++|++|+.+.+++.. ++.++++|++.....
T Consensus 561 k~v~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~--~~l~kl~~~~~~~~~ 633 (805)
T PRK00390 561 KKLLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAY--RFLQRVWRLVVDAKG 633 (805)
T ss_pred hhheecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHH--HHHHHHHHHHHHhhh
Confidence 999999998 9999999999999999999999999999987888999999999998763 468888888766322
Q ss_pred cccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC
Q psy4049 385 KSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464 (528)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~ 464 (528)
. ... . + ......|+|++.+++++.+++.++|++|+|+.|++.+++|++.+++|++
T Consensus 634 ~---~~~-~---~-------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~----------- 688 (805)
T PRK00390 634 E---AGA-L---D-------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAED----------- 688 (805)
T ss_pred c---ccc-c---C-------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-----------
Confidence 1 110 0 0 0124579999999999999999999999999999999999998888761
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC--ccccccccc
Q psy4049 465 KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT--NERLWDNMR 515 (528)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~--~~~~w~~~~ 515 (528)
.....++..+++.+++||+||+||++|+||+.|+... ....||..+
T Consensus 689 -----~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~~sv~~~~wP~~~ 736 (805)
T PRK00390 689 -----EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHEGSIANAPWPTAD 736 (805)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeeEecCCCCCC
Confidence 1133466788999999999999999999999997532 347888765
No 31
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=7.8e-71 Score=607.73 Aligned_cols=454 Identities=20% Similarity=0.337 Sum_probs=366.6
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++||+.+||||||.|||||+++++++|+++||+||+ |++|++++|||+||+|++.+|.+.|++|.++++++.+.++
T Consensus 28 k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~--G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~ 105 (842)
T TIGR00396 28 KPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMK--GYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMK 105 (842)
T ss_pred CCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhc--CCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCC
Q psy4049 83 LMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIR 160 (528)
Q Consensus 83 ~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 160 (528)
+++++||+++| ++++|+++.|.+.++++|.+|+++|+||+++++++|||.|+++|++.+|...
T Consensus 106 ~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~--------------- 170 (842)
T TIGR00396 106 KQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSD--------------- 170 (842)
T ss_pred HHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhc---------------
Confidence 99999998765 7899999999999999999999999999999999999999999999998432
Q ss_pred CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCC------------------------------C----
Q psy4049 161 PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE------------------------------D---- 206 (528)
Q Consensus 161 ~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------------------~---- 206 (528)
| .|++||.+++.+...||||++++|.+.+.++++... .
T Consensus 171 ----g----~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v 242 (842)
T TIGR00396 171 ----G----RSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAV 242 (842)
T ss_pred ----C----ccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEE
Confidence 1 388999999999999999998887765544311100 0
Q ss_pred --------------------------------------------------------------------------------
Q psy4049 207 -------------------------------------------------------------------------------- 206 (528)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (528)
T Consensus 243 ~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~ 322 (842)
T TIGR00396 243 FTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANY 322 (842)
T ss_pred EeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCc
Confidence
Q ss_pred ---------------------------------cccc---------------------------hhhHHHHHHHHhc---
Q psy4049 207 ---------------------------------VVKP---------------------------KKFYNQLRNMCSE--- 223 (528)
Q Consensus 207 ---------------------------------~~~p---------------------------~~~~~~~~~~l~~--- 223 (528)
.+.+ ..+++.+.+.|++
T Consensus 323 V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~ 402 (842)
T TIGR00396 323 VLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGK 402 (842)
T ss_pred ccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCC
Confidence 0000 0011122233332
Q ss_pred -------cCCCccccccCCCcccccccCC---------------------------------------------------
Q psy4049 224 -------IENDISVSRPKARVHWGIPVPD--------------------------------------------------- 245 (528)
Q Consensus 224 -------~~~dw~isR~~~~~~WG~~ip~--------------------------------------------------- 245 (528)
.++|||||||| +||+|||.
T Consensus 403 ~~~~v~yrlrDW~ISRQR---yWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~ 479 (842)
T TIGR00396 403 GKRKVNYRLRDWLFSRQR---YWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKP 479 (842)
T ss_pred CCceEEeecccceeeccc---ccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCC
Confidence 29999999998 99999992
Q ss_pred --CCCCeEEEeccchhhhhhhhc-----CCC----CCC-CCccceEeeecccchhhh---HHHHHHhhc----CCCCCcE
Q psy4049 246 --DDTQTIYVWLDALMNYLTVSG-----YPD----FHT-WPPHIQILGKDILKFHGI---YWPAFLIAA----GLEPPKS 306 (528)
Q Consensus 246 --~~~~~~~~wfds~~~~~~~~~-----~~~----~~~-~~~di~~~G~D~~~~h~~---~~~a~~~~~----~~~~~~~ 306 (528)
.+.+||||||||+|.++..+. ++. ++. +|+|++++|.||+..|.+ ||.+.|... +..||++
T Consensus 480 ~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~ 559 (842)
T TIGR00396 480 ALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKK 559 (842)
T ss_pred cEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHH
Confidence 035799999999976665331 111 445 699999999999754433 355555543 4579999
Q ss_pred EEEeeeeee-----CCC---------------------------cccccCCCccCcchhhhhcCchHHHHHHHhcCCCCC
Q psy4049 307 FLVHSHWTV-----DGV---------------------------KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHS 354 (528)
Q Consensus 307 ~~~hg~~~~-----~g~---------------------------KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~ 354 (528)
+++|||++- +|+ |||||+||+|+|.+++++||+|++|+|+++.+++++
T Consensus 560 l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~ 639 (842)
T TIGR00396 560 LINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAA 639 (842)
T ss_pred HhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCC
Confidence 999999964 788 999999999999999999999999999998878899
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhccc-
Q psy4049 355 DSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFN- 433 (528)
Q Consensus 355 ~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~- 433 (528)
+++|+.+.+++.. ++.++++|++.++.....+.. ..+ .. .+...|+|++.+++++.+++.++|++|+
T Consensus 640 d~~~~~~~l~~~~--~~l~kl~~~~~~~~~~~~~~~-~~~---~~------~l~~~d~~il~~l~~~i~~v~~~~e~y~~ 707 (842)
T TIGR00396 640 SLEWNDSGLEGAR--RFLDRVWNLFYNILGELDGKT-YLT---PT------ILEEAQKELRRDVHKFLKKVTEDLEKLES 707 (842)
T ss_pred CCccCHHHHHHHH--HHHHHHHHHHHHHHhhhcccc-cCC---cc------cCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999998763 468899999877544321110 000 00 1346899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC---Ccccc
Q psy4049 434 FYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP---TNERL 510 (528)
Q Consensus 434 ~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~---~~~~~ 510 (528)
|+.|++.+++|++.++++. . . .++..+++.+++||+||+||++|+||+.|+.. .....
T Consensus 708 fn~ai~~l~~f~n~L~~~~-------------~-~-----~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~~~sv~~~~ 768 (842)
T TIGR00396 708 FNTAISAMMILLNALYKAK-------------K-D-----ALYLEYLKGFLTVLSPFAPHLAEELWEKLGSEPFIIKQAK 768 (842)
T ss_pred HHHHHHHHHHHHHHHHhhh-------------h-H-----HHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCCCeeecCC
Confidence 9999999999997555431 0 0 24668899999999999999999999999843 34578
Q ss_pred ccccc
Q psy4049 511 WDNMR 515 (528)
Q Consensus 511 w~~~~ 515 (528)
||..+
T Consensus 769 wP~~d 773 (842)
T TIGR00396 769 WPKVD 773 (842)
T ss_pred CCCCC
Confidence 98865
No 32
>KOG1247|consensus
Probab=100.00 E-value=2.2e-71 Score=529.03 Aligned_cols=488 Identities=21% Similarity=0.356 Sum_probs=431.3
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHH-HHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTA-LLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~-v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++++|+.+.||+|..+|+||+-+. +.|||++||.+.+ |++..+++|+|++|+.++.+|.++|.+|+++|+++...+
T Consensus 13 ~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r--~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ih 90 (567)
T KOG1247|consen 13 ERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLR--GPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIH 90 (567)
T ss_pred ccceeeecccceecccccccceeeEEeehhhhcccccCC--CCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhH
Confidence 5678999999999999999999885 6699999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----hhhhhhhhc
Q psy4049 82 KLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN----EEESFLLEH 157 (528)
Q Consensus 82 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~----~~~~~~~~~ 157 (528)
++.+++++|++|.|.+|+.+...+.+|.+|.+|+++|+.-+.+..+.||..|++++++++++++|+. ++.+-.|+.
T Consensus 91 k~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~ 170 (567)
T KOG1247|consen 91 KVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDK 170 (567)
T ss_pred HHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999983 344568998
Q ss_pred cCC-CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCC--CcccchhhHHHHHHHHhccCCCccccccC
Q psy4049 158 QIR-PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE--DVVKPKKFYNQLRNMCSEIENDISVSRPK 234 (528)
Q Consensus 158 ~~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~l~~~~~dw~isR~~ 234 (528)
|+. ++......|.|..|....+.+...+.|+.|+++++.+++|++..- ..| ..++..+.++||+.|+.++||+|+
T Consensus 171 cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~W-S~Na~~it~sWlk~gl~pRCiTRD- 248 (567)
T KOG1247|consen 171 CGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDW-SQNAQNITRSWLKDGLKPRCITRD- 248 (567)
T ss_pred hhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCC-ccchHHHHHHHHHccccccccccc-
Confidence 875 566667778899999999999999999999999999999998642 344 456788999999999999999998
Q ss_pred CCcccccccCC--CCCCeEEEeccchhhhhhhhc-CCC-CCC-C--Cc---cceEeeecccchhhhHHHHHHhhcCCCCC
Q psy4049 235 ARVHWGIPVPD--DDTQTIYVWLDALMNYLTVSG-YPD-FHT-W--PP---HIQILGKDILKFHGIYWPAFLIAAGLEPP 304 (528)
Q Consensus 235 ~~~~WG~~ip~--~~~~~~~~wfds~~~~~~~~~-~~~-~~~-~--~~---di~~~G~D~~~~h~~~~~a~~~~~~~~~~ 304 (528)
+.||+|+|- .++.|+||||||.++|++.+. +.+ |++ | |. .++++|||++-||++.+|+...+.+....
T Consensus 249 --LkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t 326 (567)
T KOG1247|consen 249 --LKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYT 326 (567)
T ss_pred --cccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCch
Confidence 899999995 578999999999999998874 222 555 4 32 58999999999999999999888775433
Q ss_pred --cEEEEeeeeeeCCCcccccCCCccCcchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 305 --KSFLVHSHWTVDGVKMSKSVGNVVDPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNR 381 (528)
Q Consensus 305 --~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r 381 (528)
.++-...++..+.+|+|||+|..|-..+.-+ .+++++.||||++.+|+.+|..|+++++....|+++.+.++||++|
T Consensus 327 ~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR 406 (567)
T KOG1247|consen 327 VVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNR 406 (567)
T ss_pred hheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344446777899999999999998888776 5899999999999999999999999999999999999999999999
Q ss_pred HHhcc-cCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccc
Q psy4049 382 CLSKS-INPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTL 460 (528)
Q Consensus 382 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l 460 (528)
+++.. .+.++.+|... +..-|+.+++.++.+..++.++||.-..+++++.++++.+..|.|++..+.+++
T Consensus 407 ~l~fv~~~~~g~Vp~~~---------~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~ 477 (567)
T KOG1247|consen 407 VLKFVAAKYNGVVPEME---------LTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKL 477 (567)
T ss_pred HHHHHHHhhCCccccee---------ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccch
Confidence 99865 35667777642 345589999999999999999999999999999999999999999999887766
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC
Q psy4049 461 RKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT 506 (528)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~ 506 (528)
...+ +..+..+..+...++..++.+|.|+||.++.+|.++++.+.
T Consensus 478 ~~~~-r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~ 522 (567)
T KOG1247|consen 478 YEES-RQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPE 522 (567)
T ss_pred hhhc-ccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCcc
Confidence 6553 44566677777888889999999999999999999999864
No 33
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=5e-69 Score=593.61 Aligned_cols=451 Identities=21% Similarity=0.303 Sum_probs=361.9
Q ss_pred CCCcEEEECCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQ 80 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~ 80 (528)
.++++||+.+||||||. |||||+++++++|+++||+||+ |++|++++|||+||+|++.+|.+.|.+|.+++.++.+.
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~--G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~ 185 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQ--GYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhc--CCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHH
Confidence 35679999999999996 9999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhcc
Q psy4049 81 YKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQ 158 (528)
Q Consensus 81 ~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 158 (528)
+++++++||+++| ++++|+++.|.++++++|.+|+++|+||+++.+++|||.|+++|++.+|+..
T Consensus 186 ~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~------------- 252 (963)
T PLN02563 186 FRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG------------- 252 (963)
T ss_pred HHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcC-------------
Confidence 9999999998776 8999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhC----------------------------------
Q psy4049 159 IRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKN---------------------------------- 204 (528)
Q Consensus 159 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------------------- 204 (528)
.|++||.+++.+...||||++++|.+.+.++++..
T Consensus 253 -----------~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~ 321 (963)
T PLN02563 253 -----------LSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKER 321 (963)
T ss_pred -----------CCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCC
Confidence 48899999999999999999888877766653100
Q ss_pred CC------------------cccchh------------------------------------------------------
Q psy4049 205 ED------------------VVKPKK------------------------------------------------------ 212 (528)
Q Consensus 205 ~~------------------~~~p~~------------------------------------------------------ 212 (528)
.. .+.|+.
T Consensus 322 ~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~ 401 (963)
T PLN02563 322 DEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEA 401 (963)
T ss_pred CCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCe
Confidence 00 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy4049 213 -------------------------------------------------------------------------------- 212 (528)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (528)
T Consensus 402 iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~e 481 (963)
T PLN02563 402 IPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKE 481 (963)
T ss_pred eEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHH
Confidence
Q ss_pred hHHHHHHHHhc----------cCCCccccccCCCcccccccCC-------------------------------------
Q psy4049 213 FYNQLRNMCSE----------IENDISVSRPKARVHWGIPVPD------------------------------------- 245 (528)
Q Consensus 213 ~~~~~~~~l~~----------~~~dw~isR~~~~~~WG~~ip~------------------------------------- 245 (528)
+++.+.++|++ .++|||||||| +||+|||.
T Consensus 482 A~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQR---yWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl 558 (963)
T PLN02563 482 AAKKVIEWLEETGNGKKKVNYKLRDWLFARQR---YWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPL 558 (963)
T ss_pred HHHHHHHHHHhCCCCCCeeEecCCCceEeeec---ccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCch
Confidence 00111122222 18999999998 99999992
Q ss_pred -------------------CCCCeEEEeccchhhhhhhhcCCC-----C-----CC-CCccceEeeecccchh---hhHH
Q psy4049 246 -------------------DDTQTIYVWLDALMNYLTVSGYPD-----F-----HT-WPPHIQILGKDILKFH---GIYW 292 (528)
Q Consensus 246 -------------------~~~~~~~~wfds~~~~~~~~~~~~-----~-----~~-~~~di~~~G~D~~~~h---~~~~ 292 (528)
.+.+|||+||+|.++|+... +|. | +. +|+|++++|.||+-.| .-||
T Consensus 559 ~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~-~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw 637 (963)
T PLN02563 559 AKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFM-DPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFW 637 (963)
T ss_pred hcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHh-CCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHH
Confidence 03578999999987766554 332 2 23 6999999999997544 3355
Q ss_pred HHHHhhcC----CCCCcEEEEeeeee----------eCCC----------------------------------------
Q psy4049 293 PAFLIAAG----LEPPKSFLVHSHWT----------VDGV---------------------------------------- 318 (528)
Q Consensus 293 ~a~~~~~~----~~~~~~~~~hg~~~----------~~g~---------------------------------------- 318 (528)
...+..+| ..||+++++|||++ .+|+
T Consensus 638 ~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (963)
T PLN02563 638 HKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRL 717 (963)
T ss_pred HHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccc
Confidence 55555544 58999999999995 4555
Q ss_pred -----cccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q psy4049 319 -----KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVN 393 (528)
Q Consensus 319 -----KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~ 393 (528)
|||||+||+|+|.+++++||+|++|||+++.++..++.+|+.+.++... ++.++++|++....... +..
T Consensus 718 ~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~--rfL~rlwn~~~~~~~~~----~~~ 791 (963)
T PLN02563 718 IARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVH--RFLGRTWRLVVGAPLPD----GSF 791 (963)
T ss_pred cccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHH--HHHHHHHHHHHHhhhcc----ccc
Confidence 9999999999999999999999999999998888889999999988753 36778888865431100 000
Q ss_pred CCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHH
Q psy4049 394 PLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVL 473 (528)
Q Consensus 394 ~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~ 473 (528)
.. .... .....|++++++++.+.+++.++|++|+|+.|++.+++|++..++ |. .
T Consensus 792 ~~---~~~~---~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~------~------- 845 (963)
T PLN02563 792 RD---GTVV---TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD------K------- 845 (963)
T ss_pred Cc---cccc---cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch------H-------
Confidence 00 0000 012458899999999999999999999999999999999875432 10 0
Q ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHcCCC--Cccccccccc
Q psy4049 474 GVTFEVLRICGIGLQPIVPKLADKLLTRLGIP--TNERLWDNMR 515 (528)
Q Consensus 474 ~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~--~~~~~w~~~~ 515 (528)
...++++.+++||+||+||++|+||+.|+.. .....||.++
T Consensus 846 -~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~~sv~~~~WP~~d 888 (963)
T PLN02563 846 -VPREAIEPFVLLLSPYAPHLAEELWFRLGHSNSLAYEPWPEAN 888 (963)
T ss_pred -HHHHHHHHHHHHHHhhhhhHHHHHHHHcCCCCeeeeCCCCCCC
Confidence 2246788889999999999999999999853 2457898876
No 34
>KOG0432|consensus
Probab=100.00 E-value=3e-69 Score=557.13 Aligned_cols=485 Identities=20% Similarity=0.280 Sum_probs=403.0
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH-----HcCCCH-------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI-----KHKLET------- 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~-----~~g~~~------- 70 (528)
...|.|+.||||++|.|||||+.+..+.|+++||.||. |+.|.++.|+|+.|..+....+ +.|++.
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~--G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~ 151 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMH--GYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREE 151 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhc--CCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHH
Confidence 45677899999999999999999999999999999999 9999999999999976554332 222322
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 71 -----IDFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
.+|-+++...|.+++++||.++| +..=|+++...+.|-+.|.+|++.|+||++.+.|+||+...+.+++-+|+
T Consensus 152 F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe 231 (995)
T KOG0432|consen 152 FLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVE 231 (995)
T ss_pred HHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheec
Confidence 45778888999999999998766 33339999999999999999999999999999999999999999999988
Q ss_pred cCCCch-----------------------------------------------------hhhh-----------------
Q psy4049 144 PDEKNE-----------------------------------------------------EESF----------------- 153 (528)
Q Consensus 144 ~~~~~~-----------------------------------------------------~~~~----------------- 153 (528)
..+-.+ ++.|
T Consensus 232 ~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~l 311 (995)
T KOG0432|consen 232 SVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKL 311 (995)
T ss_pred ceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCcc
Confidence 763110 0111
Q ss_pred --hhhc---------------------------cC-----CCCCC-----------------------------------
Q psy4049 154 --LLEH---------------------------QI-----RPDEK----------------------------------- 164 (528)
Q Consensus 154 --~~~~---------------------------~~-----~~~~~----------------------------------- 164 (528)
+||. ++ ..+.+
T Consensus 312 PiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~ 391 (995)
T KOG0432|consen 312 PIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGK 391 (995)
T ss_pred ceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhcc
Confidence 1110 00 00001
Q ss_pred ---CCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccc
Q psy4049 165 ---NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 165 ---g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
.+.+|+|.++|..++.+...|||++..++.+...+.+++++..+.|+...+....|+++ .+||||||| +|||+
T Consensus 392 ~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~-i~DWCiSRQ---LWWGH 467 (995)
T KOG0432|consen 392 ENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLEN-IRDWCISRQ---LWWGH 467 (995)
T ss_pred CCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhh-ccccchhhh---hhhcc
Confidence 12568999999999999999999999999999999999999899999999999999999 999999999 89999
Q ss_pred ccCC-----------------------------------------CCCCeEEEeccchhhhhhhhcCCC----CCC-CCc
Q psy4049 242 PVPD-----------------------------------------DDTQTIYVWLDALMNYLTVSGYPD----FHT-WPP 275 (528)
Q Consensus 242 ~ip~-----------------------------------------~~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~ 275 (528)
.||. .+.+|+|+||+|++++++.+|||+ +.. ||.
T Consensus 468 rIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~ 547 (995)
T KOG0432|consen 468 RIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPL 547 (995)
T ss_pred ccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCc
Confidence 9994 146899999999999999999998 667 899
Q ss_pred cceEeeecccchhhhHHHHHHhhcCC-----CCCcEEEEeeee-eeCCCcccccCCCccCcchhhh--------------
Q psy4049 276 HIQILGKDILKFHGIYWPAFLIAAGL-----EPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLS-------------- 335 (528)
Q Consensus 276 di~~~G~D~~~~h~~~~~a~~~~~~~-----~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~-------------- 335 (528)
.+.-.|.|++| ||++.|.++|. -||.++++||+| .-.|+|||||+||||+|.|+|+
T Consensus 548 sllETG~DILf----FWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~g 623 (995)
T KOG0432|consen 548 SLLETGHDILF----FWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSG 623 (995)
T ss_pred hhhhcCchHHH----HHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcC
Confidence 99999999998 89999888764 599999999999 6899999999999999999997
Q ss_pred ----------------hc-------CchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy4049 336 ----------------DF-------TSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNV 392 (528)
Q Consensus 336 ----------------~~-------~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~ 392 (528)
.| |.|+|||.|++.....+|++++...++.. +.++|++||+..+++....+ +.
T Consensus 624 NLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~--r~FcNKlWNa~rF~l~~lg~--~~ 699 (995)
T KOG0432|consen 624 NLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY--RHFCNKLWNATRFALQRLGE--NF 699 (995)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH--HHHHHHHHHHHHHHHHhccc--CC
Confidence 33 99999999999888889999999999874 56999999999877764221 11
Q ss_pred CCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCcccccccCcHHHHH
Q psy4049 393 NPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKPWTLRKENKIEELN 470 (528)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~l~~~~~~~~~~ 470 (528)
.|... ..+. +.....|.|++.+|+...+.+.+.++.|+|+.|+..+..|. ..|.-|++.+||. +..+ ....+.
T Consensus 700 ~p~~~-~~~~--~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~-l~~~-~~~~~~ 774 (995)
T KOG0432|consen 700 VPSPT-EDLS--GNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPL-LWGD-SEALAY 774 (995)
T ss_pred CCCcc-cccC--CCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH-hcCC-cHHHHH
Confidence 11110 0010 11123899999999999999999999999999999999986 4799999999983 3333 245667
Q ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC
Q psy4049 471 LVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT 506 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~ 506 (528)
.+..++..++...++||+||||+++|++||+|+...
T Consensus 775 ~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~ 810 (995)
T KOG0432|consen 775 EARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRK 810 (995)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCC
Confidence 778888999999999999999999999999996543
No 35
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-67 Score=594.11 Aligned_cols=486 Identities=15% Similarity=0.143 Sum_probs=368.6
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-------CCC------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-------KLE------ 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-------g~~------ 69 (528)
+++|+|+.||||+||.|||||+++++++|+++||.||+ |++|+|++||||||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~--G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~ 121 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLR--GANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEE 121 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcC--CCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccc
Confidence 36799999999999999999999999999999999999 999999999999999999997552 211
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHhhc
Q psy4049 70 -------------------------------------------------------------TIDFCNKISDQYKLMFKTY 88 (528)
Q Consensus 70 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~l 88 (528)
|..+++++...+++++++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~l 201 (1084)
T PLN02959 122 DEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAF 201 (1084)
T ss_pred cccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHh
Confidence 2335666668889999999
Q ss_pred CcccC--CCCCCCC--HHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCC------------C-----
Q psy4049 89 DIEYT--HYVRTTS--EHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDE------------K----- 147 (528)
Q Consensus 89 ~i~~d--~~~~t~~--~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~------------~----- 147 (528)
|++.| +-+.|++ +.|..++++.|.+|+++|+||++.++++|||.|++.+++++++..+ +
T Consensus 202 G~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~ 281 (1084)
T PLN02959 202 GLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPF 281 (1084)
T ss_pred CceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcc
Confidence 98654 6677877 9999999999999999999999999999999999999997654221 0
Q ss_pred ---------ch----------------------------------h-------h-----hh-------------------
Q psy4049 148 ---------NE----------------------------------E-------E-----SF------------------- 153 (528)
Q Consensus 148 ---------~~----------------------------------~-------~-----~~------------------- 153 (528)
.+ + . .+
T Consensus 282 ~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~ 361 (1084)
T PLN02959 282 PGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGY 361 (1084)
T ss_pred hhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHH
Confidence 00 0 0 00
Q ss_pred -hh-----------hc---------------------------------------------------------cCCCCCC
Q psy4049 154 -LL-----------EH---------------------------------------------------------QIRPDEK 164 (528)
Q Consensus 154 -~~-----------~~---------------------------------------------------------~~~~~~~ 164 (528)
+. +. ...++..
T Consensus 362 ~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~ 441 (1084)
T PLN02959 362 DLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIP 441 (1084)
T ss_pred HhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccC
Confidence 00 00 0000110
Q ss_pred ---------------------------------------C---------C-------------------------Ccccc
Q psy4049 165 ---------------------------------------N---------E-------------------------GQYVS 171 (528)
Q Consensus 165 ---------------------------------------g---------~-------------------------~~~~~ 171 (528)
| . ..++|
T Consensus 442 g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~ 521 (1084)
T PLN02959 442 EFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVM 521 (1084)
T ss_pred CCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeE
Confidence 1 0 12578
Q ss_pred cCCCCCcEEeeeceeeeecc--ccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCC---
Q psy4049 172 IESNQPVEWVEEQNYMFKLS--NYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD--- 246 (528)
Q Consensus 172 ~~~g~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~--- 246 (528)
.+||.+++++..+|||++++ ++++.+.+.++.. .|+|+..++.+.+||++ ++|||||||| +||+|||.+
T Consensus 522 ~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v--~~~P~~~~~~~~~wl~~-l~DWciSRQr---~wGtpIPWd~~~ 595 (1084)
T PLN02959 522 SRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKM--NLYSDETRHGFEHTLGW-LNQWACSRSF---GLGTRIPWDEQF 595 (1084)
T ss_pred ECCCCEEEEeecCCeeEECCchHHHHHHHHHHccc--EEECHHHHHHHHHHHhC-CCceeecccc---cCCCcCCcccce
Confidence 99999999999999999998 6899999998765 59999999999999999 9999999996 999999931
Q ss_pred ---------------------------------------CCCeEEEeccchhhhhhhhcCCC---------CCC-CCccc
Q psy4049 247 ---------------------------------------DTQTIYVWLDALMNYLTVSGYPD---------FHT-WPPHI 277 (528)
Q Consensus 247 ---------------------------------------~~~~~~~wfds~~~~~~~~~~~~---------~~~-~~~di 277 (528)
..+++|+||+|+.++.++ |++. |+. ||.|+
T Consensus 596 ~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl 674 (1084)
T PLN02959 596 LIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDL 674 (1084)
T ss_pred eeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeE
Confidence 145899999999877655 6543 455 79999
Q ss_pred eEeeecccchhhhHHHHHHhh-cCCCCC-cEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCC
Q psy4049 278 QILGKDILKFHGIYWPAFLIA-AGLEPP-KSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355 (528)
Q Consensus 278 ~~~G~D~~~~h~~~~~a~~~~-~~~~~~-~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~ 355 (528)
++.|+||+++|..+......+ .+..|+ +.+++||+++.+|+|||||+||+|+|.+++++||+|++|||+++.++..+|
T Consensus 675 ~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D 754 (1084)
T PLN02959 675 RVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDD 754 (1084)
T ss_pred EEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCC
Confidence 999999999765543322233 344555 679999999999999999999999999999999999999999988777899
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHH
Q psy4049 356 SNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFY 435 (528)
Q Consensus 356 ~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~ 435 (528)
.+|+.+..... ..++.|.+..+..... ....... . ......|+|++++++.+..++.++|++|+++
T Consensus 755 ~nF~~k~~n~~-----~~~l~n~~~~~~~~~~-~~~~~~~--~------~~~~~~D~wils~l~~~i~~v~~a~e~y~f~ 820 (1084)
T PLN02959 755 ANFVFETANAA-----ILRLTKEIAWMEEVLA-AESSLRT--G------PPSTYADRVFENEINIAIAETEKNYEAMMFR 820 (1084)
T ss_pred CCccHHHHHHH-----HHHHHHHHHHHHHhhh-hhcccCC--c------ccCCHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 99999877653 2234443322221110 0000000 0 0134679999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHc-CCC--Cccccc
Q psy4049 436 KGVDSI-ILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRL-GIP--TNERLW 511 (528)
Q Consensus 436 ~~~~~l-~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l-~~~--~~~~~w 511 (528)
.|++.. +++...-.+|. +..+... ....++..+|+.+++||+||+||++|+||+.| +.. .....|
T Consensus 821 ~A~~~~~Yel~~~k~~yr-------~~~~~~~----~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~w 889 (1084)
T PLN02959 821 EALKSGFYDLQAARDEYR-------LSCGSGG----MNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGW 889 (1084)
T ss_pred HHHHHHHHHHHHhHHHHh-------hccccch----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCeEEecCC
Confidence 999864 32322222221 1111111 23456778999999999999999999999999 432 235789
Q ss_pred ccccccCccch
Q psy4049 512 DNMRFSDNDMF 522 (528)
Q Consensus 512 ~~~~~~~~~~~ 522 (528)
|..+.++..+.
T Consensus 890 P~~~~~d~~~e 900 (1084)
T PLN02959 890 PVAGEPDLTLK 900 (1084)
T ss_pred CCCCccCHHHH
Confidence 98876665443
No 36
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-66 Score=577.39 Aligned_cols=465 Identities=18% Similarity=0.234 Sum_probs=370.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc---------------CC---------CHHHHH
Q psy4049 19 PHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH---------------KL---------ETIDFC 74 (528)
Q Consensus 19 lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~---------------g~---------~~~~~~ 74 (528)
|||||+++++++|+++||+||+ |++|++++|||+||+||+..|++. |+ ++.+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~--G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~ 78 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMR--GYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIV 78 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcC--CCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHH
Confidence 7999999999999999999999 999999999999999999987642 33 457899
Q ss_pred HHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----
Q psy4049 75 NKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN---- 148 (528)
Q Consensus 75 ~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~---- 148 (528)
+++.+.+++++++||++.| +-+.|+++.|.++++++|.+|+++|+||++.++++|||.|++.+++.++...+..
T Consensus 79 ~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~ 158 (897)
T PRK12300 79 EYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVE 158 (897)
T ss_pred HHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcce
Confidence 9999999999999998765 7778999999999999999999999999999999999999999999888643210
Q ss_pred --------h--------------------------hh---------------------hh---------------hh---
Q psy4049 149 --------E--------------------------EE---------------------SF---------------LL--- 155 (528)
Q Consensus 149 --------~--------------------------~~---------------------~~---------------~~--- 155 (528)
+ .. .+ +.
T Consensus 159 ~~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~ 238 (897)
T PRK12300 159 YTLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKK 238 (897)
T ss_pred EEEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCE
Confidence 0 00 00 00
Q ss_pred -----------------------------------------hccC--------C-------C------------------
Q psy4049 156 -----------------------------------------EHQI--------R-------P------------------ 161 (528)
Q Consensus 156 -----------------------------------------~~~~--------~-------~------------------ 161 (528)
.... . +
T Consensus 239 ~~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~ 318 (897)
T PRK12300 239 VKNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIK 318 (897)
T ss_pred EECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCC
Confidence 0000 0 0
Q ss_pred ---C---------------CCC-----------C--------------------------CcccccCCCCCcEEee-ece
Q psy4049 162 ---D---------------EKN-----------E--------------------------GQYVSIESNQPVEWVE-EQN 185 (528)
Q Consensus 162 ---~---------------~~g-----------~--------------------------~~~~~~~~g~~~~~~~-~~~ 185 (528)
| .+| . ..++|++||++++++. .+|
T Consensus 319 ~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~Q 398 (897)
T PRK12300 319 SQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQ 398 (897)
T ss_pred CccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCc
Confidence 1 011 0 2267779999999875 599
Q ss_pred eeeecc--ccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCC--------CCeEEEec
Q psy4049 186 YMFKLS--NYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDD--------TQTIYVWL 255 (528)
Q Consensus 186 ~~~~l~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~--------~~~~~~wf 255 (528)
||++++ ++++.+.++++.. .|.|+..++.+.+||++ ++|||||||| +||+|||.+. ..++|+|+
T Consensus 399 WFi~~~~~~~k~~~~~~~~~~--~~~P~~~~~~~~~~l~~-l~DW~ISRqr---~WGtpiP~~~~w~~esl~ds~iY~~~ 472 (897)
T PRK12300 399 WFIDYSDPEWKELAHKALDNM--EIIPEEYRKEFENTIDW-LKDRACARRR---GLGTRLPWDEEWIIESLSDSTIYMAY 472 (897)
T ss_pred eEEEcCcHHHHHHHHHHHccC--EEECHHHHHHHHHHHhh-hhhcceeecc---ccCCcCCccCCEEeeeccccchhhhH
Confidence 999998 6999999999765 59999999999999998 9999999997 8999999642 22445555
Q ss_pred cchhhhhhhh-----------------------------cCC---------CCCC-CCccceEeeecccchhhhHHHHHH
Q psy4049 256 DALMNYLTVS-----------------------------GYP---------DFHT-WPPHIQILGKDILKFHGIYWPAFL 296 (528)
Q Consensus 256 ds~~~~~~~~-----------------------------~~~---------~~~~-~~~di~~~G~D~~~~h~~~~~a~~ 296 (528)
++...++... |.| +|+. ||.|++++|+||+++|.+|+....
T Consensus 473 ~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~ 552 (897)
T PRK12300 473 YTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNH 552 (897)
T ss_pred HHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHHHHHHHH
Confidence 5443332211 111 1455 799999999999999999996554
Q ss_pred hhc-CC-CCCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHH
Q psy4049 297 IAA-GL-EPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANT 374 (528)
Q Consensus 297 ~~~-~~-~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 374 (528)
.++ +. +.|+++++|||++.+|+|||||+||+|+|.+++++||+|++|||+++.+++.+|.+|+++.+.+..+ +.++
T Consensus 553 ~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~--~l~r 630 (897)
T PRK12300 553 VAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRR--QLER 630 (897)
T ss_pred HHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHH--HHHH
Confidence 443 33 4458999999998899999999999999999999999999999999888889999999999887643 5777
Q ss_pred HHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHhHhhh
Q psy4049 375 LGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSII-LVLHLANKFID 453 (528)
Q Consensus 375 l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~-~~~~~~n~y~~ 453 (528)
+++++.++.... .+. .....|+|++++++.+.+.+.++|++|+++.|+..++ .+...+|+|++
T Consensus 631 ~~~~~~~~~~~~------~~~----------~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~ 694 (897)
T PRK12300 631 FYELAKELIEIG------GEE----------ELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLR 694 (897)
T ss_pred HHHHHHHHhcCC------Ccc----------ccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 888776544311 000 1246799999999999999999999999999998886 55678899987
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCC--cccccccccc--cCccch
Q psy4049 454 TTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPT--NERLWDNMRF--SDNDMF 522 (528)
Q Consensus 454 ~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~--~~~~w~~~~~--~~~~~~ 522 (528)
..++ .+..++.++++.+++||+||+||++|+||+.|+... ....||..+. +|.++.
T Consensus 695 ~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~~sv~~~~wP~~~~~~~d~~~~ 754 (897)
T PRK12300 695 RVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDESKIDEEAE 754 (897)
T ss_pred hcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeEEeCCCCCCCcccCCHHHH
Confidence 6542 355677899999999999999999999999998643 4578998763 454443
No 37
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-66 Score=548.95 Aligned_cols=450 Identities=22% Similarity=0.330 Sum_probs=351.6
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
+|+||+.+.|||||.|||||.|+|+++|+++||+||+ ||+|+|.+|||..|+|++..|.+.|.+|..|++++.+.+++
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~--GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ--GYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhc--CCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 84 MFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 84 ~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
+|++||.++| +.+.|++|.|.+++||+|.+|+++|++|+++.++.|||.|++.++++++...|
T Consensus 112 qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~--------------- 176 (814)
T COG0495 112 QLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGG--------------- 176 (814)
T ss_pred HHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCC---------------
Confidence 9999998776 77889999999999999999999999999999999999999999999998663
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHH-------------------------------------------
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVA------------------------------------------- 198 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~------------------------------------------- 198 (528)
|++||.+++.+.-.||||+++++.+.+.
T Consensus 177 ---------~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~ 247 (814)
T COG0495 177 ---------CWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSI 247 (814)
T ss_pred ---------cccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceee
Confidence 2233333333333333333322222111
Q ss_pred --------------------------------------------------------------------------------
Q psy4049 199 -------------------------------------------------------------------------------- 198 (528)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (528)
T Consensus 248 ~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~ 327 (814)
T COG0495 248 EVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVW 327 (814)
T ss_pred eeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEE
Confidence
Q ss_pred -------------------------HHHHhCC----Ccccc--------------------------hhhHHHHHHHHhc
Q psy4049 199 -------------------------HWLDKNE----DVVKP--------------------------KKFYNQLRNMCSE 223 (528)
Q Consensus 199 -------------------------~~~~~~~----~~~~p--------------------------~~~~~~~~~~l~~ 223 (528)
++...-. ..+.+ +.....+..++..
T Consensus 328 ~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~ 407 (814)
T COG0495 328 IANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVK 407 (814)
T ss_pred EeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHH
Confidence 1111000 00000 0124445555553
Q ss_pred ----------cCCCccccccCCCcccccccCC------------------------------------------------
Q psy4049 224 ----------IENDISVSRPKARVHWGIPVPD------------------------------------------------ 245 (528)
Q Consensus 224 ----------~~~dw~isR~~~~~~WG~~ip~------------------------------------------------ 245 (528)
.++||.+|||| +||.|||.
T Consensus 408 ~~~~q~~v~Y~lrdW~~srqR---ywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~ 484 (814)
T COG0495 408 RGLGQWFVNYRLRDWLKSRQR---YWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDST 484 (814)
T ss_pred hcCCceEEecccchHHHHHHH---HhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCc
Confidence 49999999998 89999992
Q ss_pred --CCCCeEEEeccchhhhhhhhcC------CC----CCC-CCccceEeeecccchhhhH---HHHHHhhcCC----CCCc
Q psy4049 246 --DDTQTIYVWLDALMNYLTVSGY------PD----FHT-WPPHIQILGKDILKFHGIY---WPAFLIAAGL----EPPK 305 (528)
Q Consensus 246 --~~~~~~~~wfds~~~~~~~~~~------~~----~~~-~~~di~~~G~D~~~~h~~~---~~a~~~~~~~----~~~~ 305 (528)
.+.+||++|++|.+.+...+.+ +. +.. +|.|++++|+||+-.|..| |...+.-.|+ +||+
T Consensus 485 ~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~ 564 (814)
T COG0495 485 AYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFK 564 (814)
T ss_pred eeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchh
Confidence 0467999999999887766532 11 455 6999999999999988775 4444444454 5888
Q ss_pred EEEEeeeeee-CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4049 306 SFLVHSHWTV-DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLS 384 (528)
Q Consensus 306 ~~~~hg~~~~-~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~ 384 (528)
++.++|||+. +|+|||||+||+|+|++++++||+|++|+|+++.+|..++++|+.+.++.+.+ +.+++++++.....
T Consensus 565 ~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r--fL~r~~~l~~~~~~ 642 (814)
T COG0495 565 KLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARR--FLQRVWNLVKEHLE 642 (814)
T ss_pred hhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHH--HHHHHHHHHHHhhh
Confidence 8999999988 79999999999999999999999999999999999999999999999998743 57778887766553
Q ss_pred cccCCCCCCCCcccchhhhccCCChhH-HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhHhhhccCcccccc
Q psy4049 385 KSINPDNVNPLVNRECYEVMFTKEPVL-TELIENCQTLHEDVKLHYSE-FNFYKGVDSIILVLHLANKFIDTTKPWTLRK 462 (528)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~~~e~-~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~ 462 (528)
.... . ....+ ......++++...+.+.+++ +.+..+++.+++|++...+|......
T Consensus 643 ~~~~----~-------------~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~----- 700 (814)
T COG0495 643 KLVE----E-------------LTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG----- 700 (814)
T ss_pred cccc----c-------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 2100 0 01111 34555566777777888887 88899999999999988888754321
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC--Cccccccccc
Q psy4049 463 ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP--TNERLWDNMR 515 (528)
Q Consensus 463 ~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~--~~~~~w~~~~ 515 (528)
.. .++.++++.+++||+||+||++|++|+.|+.. .....||+.|
T Consensus 701 ---~~------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~~~v~~~~wP~~d 746 (814)
T COG0495 701 ---DR------KVLREALETWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPEPD 746 (814)
T ss_pred ---hH------HHHHHHHHHHHHHhcccccHHHHHHHHHhcCCCceeeCCCCCCC
Confidence 11 45568899999999999999999999999953 3456798877
No 38
>KOG0433|consensus
Probab=100.00 E-value=4.4e-65 Score=515.97 Aligned_cols=476 Identities=19% Similarity=0.294 Sum_probs=391.1
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHH-HHHHH------cCCCH------
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQ-NAAIK------HKLET------ 70 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~-~~a~~------~g~~~------ 70 (528)
+.-||.-. +||.|||||+++.|+.|++.|++-+. |.+|+++.|||+||.|++ .+|.+ ..++|
T Consensus 58 ~~~f~L~d---anG~lhlghalnkILkdIinr~~laq--g~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~ 132 (937)
T KOG0433|consen 58 RVEFELKD---ANGNLHLGHALNKILKDIINRILLAQ--GKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAK 132 (937)
T ss_pred CceEEEec---cCCCccchHHHHHHHHHHHHHHHHhc--CceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHH
Confidence 44566555 89999999999999999999999999 999999999999999999 45432 12344
Q ss_pred -HHHHHHHHHHHHHHHhhcCcc--cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCC
Q psy4049 71 -IDFCNKISDQYKLMFKTYDIE--YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEK 147 (528)
Q Consensus 71 -~~~~~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~ 147 (528)
+.+|+.-.+.+++.++++||- +++-|-|.++.|.....++|.+|+++|+||+...||+|+|+..+.|++++++..+.
T Consensus 133 Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~n 212 (937)
T KOG0433|consen 133 ARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDN 212 (937)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcC
Confidence 346777888999999999995 55667799999999999999999999999999999999999999999999987632
Q ss_pred ch--------------------hh-------------hh-------hh--------------------------------
Q psy4049 148 NE--------------------EE-------------SF-------LL-------------------------------- 155 (528)
Q Consensus 148 ~~--------------------~~-------------~~-------~~-------------------------------- 155 (528)
.- ++ .| +|
T Consensus 213 H~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe 292 (937)
T KOG0433|consen 213 HQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFE 292 (937)
T ss_pred CcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhh
Confidence 10 00 00 00
Q ss_pred -----------------------hcc----------------------------------------------CCCCCC--
Q psy4049 156 -----------------------EHQ----------------------------------------------IRPDEK-- 164 (528)
Q Consensus 156 -----------------------~~~----------------------------------------------~~~~~~-- 164 (528)
.+| ..+|..
T Consensus 293 ~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~ 372 (937)
T KOG0433|consen 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGC 372 (937)
T ss_pred hhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCc
Confidence 000 001111
Q ss_pred ------------------------------------CCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcc
Q psy4049 165 ------------------------------------NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVV 208 (528)
Q Consensus 165 ------------------------------------g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 208 (528)
-+..|..|++.+|+.+|..+|||.++++++....+.+++.+ +
T Consensus 373 yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk--~ 450 (937)
T KOG0433|consen 373 YTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVK--V 450 (937)
T ss_pred eecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhce--e
Confidence 12558889999999999999999999999999999999886 9
Q ss_pred cchhhHHHHHHHHhccCCCccccccCCCcccccccCC-------------------------------------------
Q psy4049 209 KPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD------------------------------------------- 245 (528)
Q Consensus 209 ~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~------------------------------------------- 245 (528)
.|......+..++.. .++||||||| -||+|||.
T Consensus 451 ~P~~~~~rl~~~~~~-R~~WCISRQR---~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~ 526 (937)
T KOG0433|consen 451 APGDSDLRLKQLVTT-RPSWCISRQR---VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEE 526 (937)
T ss_pred CCcchHHHHHHHHcC-CCcceeeecc---ccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHh
Confidence 999999999999997 9999999999 59999993
Q ss_pred -------------CCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccchhhhHHHHHHhhc---CCCCCcEEE
Q psy4049 246 -------------DDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILKFHGIYWPAFLIAA---GLEPPKSFL 308 (528)
Q Consensus 246 -------------~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~---~~~~~~~~~ 308 (528)
..+++|||||||+.++-+.++. +. ...|++.+|.||.+ |||.++++.+. +.+|++.++
T Consensus 527 ~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~---~~~~~aDv~LEG~DQ~r--GWFQSsLLTsvA~q~kAPYk~vi 601 (937)
T KOG0433|consen 527 EVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDN---EREHVADVYLEGVDQFR--GWFQSSLLTSVAVQNKAPYKKVI 601 (937)
T ss_pred hhcccchhHHHhccCCceeeeEecCCCcceeecCC---CCCcceeeEEecchhcc--hHHHHHHHHHHHHhccCCchhee
Confidence 1478999999999887666642 22 57899999999998 99999998653 568999999
Q ss_pred Eeeee-eeCCCcccccCCCccCcchhhhh------cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 309 VHSHW-TVDGVKMSKSVGNVVDPMSKLSD------FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNR 381 (528)
Q Consensus 309 ~hg~~-~~~g~KmSkS~gn~i~~~~~~~~------~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r 381 (528)
+|||. ..+|.|||||+||||+|+.++++ ||+|+||||++... ...++...++.+.+..+ -..++.+.+.+
T Consensus 602 vHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~-~t~d~~iGp~il~qv~e--~l~K~R~T~Rf 678 (937)
T KOG0433|consen 602 VHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSE-NTGESKIGPKILDQVDE--KLIKFRNTFRF 678 (937)
T ss_pred eeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeeccc-ccCceecCHHHHHHHHH--HHHHHHhHHHH
Confidence 99987 68899999999999999999997 99999999999554 57899999999988744 36788999888
Q ss_pred HHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhHhhhccCccc
Q psy4049 382 CLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LANKFIDTTKPWT 459 (528)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n~y~~~~k~~~ 459 (528)
+++.+.+.+.....+.- ..+..+|++++.+|..+.+++.++|++|+|++++..|..|+. .++.|++..|+ +
T Consensus 679 llGnl~d~~~~~~~~p~------~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKD-R 751 (937)
T KOG0433|consen 679 LLGNLQDFDGKQVKFPL------KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKD-R 751 (937)
T ss_pred HhhcccccCCccccccc------hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhh-h
Confidence 88766554433111111 134577999999999999999999999999999999999985 57778888888 5
Q ss_pred ccccCc-HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC
Q psy4049 460 LRKENK-IEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP 505 (528)
Q Consensus 460 l~~~~~-~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~ 505 (528)
|+.+.. ..++.++.+++..++..++..++||+||++||+||.++..
T Consensus 752 LY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 752 LYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 776632 4556667777778898999999999999999999999943
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.9e-65 Score=513.37 Aligned_cols=299 Identities=23% Similarity=0.364 Sum_probs=273.9
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-CCCH------------
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-KLET------------ 70 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-g~~~------------ 70 (528)
++|+|..||||+||++||||+++++++|+++||+|++ |++|.+++|+|+||++|+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~--G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~ 78 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQ--GYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEF 78 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhc--CCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHH
Confidence 5799999999999999999999999999999999999 999999999999999999998876 7764
Q ss_pred ----HHHHHHHHHHHHHHHhhcCc--ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccccc
Q psy4049 71 ----IDFCNKISDQYKLMFKTYDI--EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRP 144 (528)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~ 144 (528)
+++++++.+.|++++++||| ++|.+++|+++.|.+.++++|.+|+++|+||+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~--------------- 143 (338)
T cd00818 79 NAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW--------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee---------------
Confidence 69999999999999999999 667888999999999999999999999999999988887
Q ss_pred CCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhcc
Q psy4049 145 DEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEI 224 (528)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 224 (528)
++++++++||||+++++++.+.++++.. .+.|+..++.+.+|+++
T Consensus 144 --------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~--~~~P~~~~~~~~~~l~~- 188 (338)
T cd00818 144 --------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKV--NWIPEWVKNRFGNWLEN- 188 (338)
T ss_pred --------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcC--cEECHHHHHHHHHHHhc-
Confidence 3467888999999999999999999875 47899999999999987
Q ss_pred CCCccccccCCCcccccccCC----CC--------CCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccc-
Q psy4049 225 ENDISVSRPKARVHWGIPVPD----DD--------TQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILK- 286 (528)
Q Consensus 225 ~~dw~isR~~~~~~WG~~ip~----~~--------~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~- 286 (528)
++||||||++ .||+|+|. ++ ++|+||||||++++++..+++. |+. ||.+++++|+||++
T Consensus 189 l~dw~iSR~~---~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~ 265 (338)
T cd00818 189 RRDWCISRQR---YWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRG 265 (338)
T ss_pred chhcceeeec---ccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhH
Confidence 9999999996 89999995 33 7899999999999999988753 667 99999999999997
Q ss_pred -hhhhHHHHHHhhcCCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCc
Q psy4049 287 -FHGIYWPAFLIAAGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNY 358 (528)
Q Consensus 287 -~h~~~~~a~~~~~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f 358 (528)
||..++++++ +.+..||+++++||+++ .+|+|||||+||+|++.|+++.||+|++|||+++.++..+|++|
T Consensus 266 wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 266 WFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred HHHHHHHHHHH-hcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 8899988875 56677889999999986 58999999999999999999999999999999998888888875
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.8e-63 Score=496.69 Aligned_cols=290 Identities=29% Similarity=0.514 Sum_probs=270.7
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCC-------------CHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKL-------------ETI 71 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~-------------~~~ 71 (528)
|++|++|||||||.+||||+++++++|+++||+|++ |++|.+++|+|+||+||+.+|++++. +++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~--G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMR--GYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPK 78 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhC--CCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHH
Confidence 589999999999999999999999999999999999 99999999999999999999999988 889
Q ss_pred HHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCch
Q psy4049 72 DFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE 149 (528)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~ 149 (528)
++++++.++|++++++|||.+| .+++|+++.|.+.++++|.+|+++|+||++++++
T Consensus 79 ~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v---------------------- 136 (312)
T cd00668 79 EFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV---------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee----------------------
Confidence 9999999999999999999988 9999999999999999999999999999887554
Q ss_pred hhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCcc
Q psy4049 150 EESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDIS 229 (528)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~ 229 (528)
+...|||++++++++.+.++++.++ +.|+..++.+.+||++++ |||
T Consensus 137 -------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~~-d~~ 182 (312)
T cd00668 137 -------------------------------RITEQWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLL-DWA 182 (312)
T ss_pred -------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC--cCChHHHHHHHHHHhCCC-CeE
Confidence 2347899999999999999998775 899999999999999955 999
Q ss_pred ccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHhhcCCC-C
Q psy4049 230 VSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLE-P 303 (528)
Q Consensus 230 isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~-~ 303 (528)
|||++ +||+|+| ++++||||||+++|+++++++. |+. ||.|+|++|+||+++|+.++++++.+++.. +
T Consensus 183 isR~~---~WG~~~P---~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~ 256 (312)
T cd00668 183 ISRQR---YWGTPLP---EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIP 256 (312)
T ss_pred EeccC---CCCCcCC---cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCC
Confidence 99996 8999999 7999999999999999998754 455 899999999999999999999999988765 8
Q ss_pred CcEEEEeeeeeeCC-CcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCc
Q psy4049 304 PKSFLVHSHWTVDG-VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNY 358 (528)
Q Consensus 304 ~~~~~~hg~~~~~g-~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f 358 (528)
++++++||+++.+| +|||||+||+|++.|+++++|+|++||++++.+++.+|.+|
T Consensus 257 ~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred cceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 99999999998777 99999999999999999999999999999998888888876
No 41
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.2e-63 Score=534.37 Aligned_cols=348 Identities=25% Similarity=0.402 Sum_probs=275.9
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-CCC-----------
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-KLE----------- 69 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-g~~----------- 69 (528)
.+++|+|+.||||+||.|||||++++++.|+++||.||+ |++|++++|||+||+||+.++++. |..
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~--G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~ 98 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQ--GYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGRE 98 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCT--TSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHH
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhC--CcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccc
Confidence 367899999999999999999999999999999999999 999999999999999999988754 432
Q ss_pred -----HHHHHHHHHHHHHHHHhhcCccc--CCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccc
Q psy4049 70 -----TIDFCNKISDQYKLMFKTYDIEY--THYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQI 142 (528)
Q Consensus 70 -----~~~~~~~~~~~~~~~~~~l~i~~--d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v 142 (528)
+.++++++.+.+++++++||+.. ++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++.+++.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 99 EFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred cchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 36789999999999999999865 47778999999999999999999999999999999999999999999999
Q ss_pred ccCCCch------------------------------------hh-----------------------------h----h
Q psy4049 143 RPDEKNE------------------------------------EE-----------------------------S----F 153 (528)
Q Consensus 143 ~~~~~~~------------------------------------~~-----------------------------~----~ 153 (528)
+.++..+ ++ . .
T Consensus 179 ~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 258 (601)
T PF00133_consen 179 EYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKE 258 (601)
T ss_dssp EEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHH
T ss_pred ccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcce
Confidence 7652100 01 0 0
Q ss_pred hh---------h----------------------------------------ccCCCCCCC-------------------
Q psy4049 154 LL---------E----------------------------------------HQIRPDEKN------------------- 165 (528)
Q Consensus 154 ~~---------~----------------------------------------~~~~~~~~g------------------- 165 (528)
+. + -...+|.+|
T Consensus 259 L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 259 LVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp HTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred ecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccH
Confidence 00 0 000112222
Q ss_pred -------------------CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCC
Q psy4049 166 -------------------EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIEN 226 (528)
Q Consensus 166 -------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 226 (528)
+.+|+|++||++++.+..+|||++++++++.+.+.+++. .|.|+..++.+.+|+++ ++
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i--~~~P~~~~~~~~~~i~~-l~ 415 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKI--KFYPESYRKRFENWIDN-LR 415 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTS--EESSSTCHHHHHHHHHT---
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccc--eEEcccchhhhhhhccc-cc
Confidence 144789999999999999999999999999999999966 59999999999999999 99
Q ss_pred CccccccCCCcccccccCC------------------------------------------------CCCCeEEEeccch
Q psy4049 227 DISVSRPKARVHWGIPVPD------------------------------------------------DDTQTIYVWLDAL 258 (528)
Q Consensus 227 dw~isR~~~~~~WG~~ip~------------------------------------------------~~~~~~~~wfds~ 258 (528)
|||||||| +||+|||. .+.+|+|+||||+
T Consensus 416 DWcISRQR---~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg 492 (601)
T PF00133_consen 416 DWCISRQR---YWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSG 492 (601)
T ss_dssp EEE-EESS---SSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHC
T ss_pred cchhhccC---CCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeecccccccc
Confidence 99999997 89999992 0368999999999
Q ss_pred hhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhh---cCCCCCcEEEEeeeee-eCCCcccccCCCcc
Q psy4049 259 MNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIA---AGLEPPKSFLVHSHWT-VDGVKMSKSVGNVV 328 (528)
Q Consensus 259 ~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~---~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i 328 (528)
+++.+.+++|. |+. +|.|++++|+||++ +|+..+++.+ .+..|++++++||+++ .+|+|||||+||+|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~--~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi 570 (601)
T PF00133_consen 493 LWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIR--GWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVI 570 (601)
T ss_dssp TCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTT--THHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--
T ss_pred CCcccccccccccchhccccCCcccccCCccchh--hHHHHhHhhccccccCCchheeeecccccccceeecccCCCccc
Confidence 99999998765 445 79999999999999 4554454433 3667999999999985 68999999999999
Q ss_pred CcchhhhhcCchHHHHHHHhcCCCCCCCCcC
Q psy4049 329 DPMSKLSDFTSCGLRYFLLREGTNHSDSNYS 359 (528)
Q Consensus 329 ~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~ 359 (528)
+|.+++++||+|++|+|+++.+.+.+|++||
T Consensus 571 ~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 571 DPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred CHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999999999999777779999886
No 42
>KOG0435|consensus
Probab=100.00 E-value=2.6e-62 Score=491.72 Aligned_cols=464 Identities=21% Similarity=0.288 Sum_probs=364.4
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++| ||....|||+|.|||||.|.|+++|+++||.||+ ||+|++.+|||.+|+|.|++|.+.|++|..|...+++.+
T Consensus 56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~--GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMK--GYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred CCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhc--CceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 5667 9999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccC
Q psy4049 82 KLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQI 159 (528)
Q Consensus 82 ~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~ 159 (528)
++++++||+.|| +.++|++|.|.+++|++|.+|+++|++|+.+..++|||.++++|++.+|...
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~-------------- 198 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDAD-------------- 198 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhccc--------------
Confidence 999999999875 8899999999999999999999999999999999999999999999998543
Q ss_pred CCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCC----------------------------------
Q psy4049 160 RPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE---------------------------------- 205 (528)
Q Consensus 160 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------- 205 (528)
| .+|++|++++-+..+|||++.+.|.+.+.+-++.-+
T Consensus 199 -----G----~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ 269 (876)
T KOG0435|consen 199 -----G----CSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEI 269 (876)
T ss_pred -----C----ccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCce
Confidence 2 278999999999999999999988877653322200
Q ss_pred --------------------------------------------Ccccc-------------------------------
Q psy4049 206 --------------------------------------------DVVKP------------------------------- 210 (528)
Q Consensus 206 --------------------------------------------~~~~p------------------------------- 210 (528)
....|
T Consensus 270 ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~ 349 (876)
T KOG0435|consen 270 LTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMG 349 (876)
T ss_pred EEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeee
Confidence 00000
Q ss_pred ----------------------------------------h-----hhHHHHHHHHhc----------cCCCccccccCC
Q psy4049 211 ----------------------------------------K-----KFYNQLRNMCSE----------IENDISVSRPKA 235 (528)
Q Consensus 211 ----------------------------------------~-----~~~~~~~~~l~~----------~~~dw~isR~~~ 235 (528)
+ .+...+.++.+. .++||-|||||
T Consensus 350 ~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQR- 428 (876)
T KOG0435|consen 350 APGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQR- 428 (876)
T ss_pred ccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhh-
Confidence 0 011123344422 29999999998
Q ss_pred CcccccccCC----------------------------------------------------CCCCeEEEeccchhhhhh
Q psy4049 236 RVHWGIPVPD----------------------------------------------------DDTQTIYVWLDALMNYLT 263 (528)
Q Consensus 236 ~~~WG~~ip~----------------------------------------------------~~~~~~~~wfds~~~~~~ 263 (528)
+||.|||. .++++||+|+||.|+|+.
T Consensus 429 --yWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlR 506 (876)
T KOG0435|consen 429 --YWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLR 506 (876)
T ss_pred --ccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEe
Confidence 99999992 158999999999999998
Q ss_pred hhcC--CC--C----CC--CCccceEeeecccchhhh---HHHHHHhhcCC----CCCcEEEEeeeeee-----------
Q psy4049 264 VSGY--PD--F----HT--WPPHIQILGKDILKFHGI---YWPAFLIAAGL----EPPKSFLVHSHWTV----------- 315 (528)
Q Consensus 264 ~~~~--~~--~----~~--~~~di~~~G~D~~~~h~~---~~~a~~~~~~~----~~~~~~~~hg~~~~----------- 315 (528)
.+.- ++ | .. .|+|++++|++|.-.|.. |+.-.+...|. +||..++..|+|.-
T Consensus 507 ylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~y 586 (876)
T KOG0435|consen 507 YLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKY 586 (876)
T ss_pred ecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCcc
Confidence 8743 22 2 12 499999999999986655 45555555443 67777777776631
Q ss_pred ---------C-----------C-------CcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 316 ---------D-----------G-------VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 316 ---------~-----------g-------~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
+ + +|||||++|+++|.|++.+||+|++|++++..+|.+.+++++.+.+....+
T Consensus 587 l~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~r 666 (876)
T KOG0435|consen 587 LGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKR 666 (876)
T ss_pred CCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHH
Confidence 0 1 599999999999999999999999999999999999999999999887633
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Q psy4049 369 AELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYS-EFNFYKGVDSIILVLHL 447 (528)
Q Consensus 369 ~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e-~~~~~~~~~~l~~~~~~ 447 (528)
...+++++..++...- ..+..++. .... ......++.+.+..+.+...+.+.+| .+.++.++..++.|.+.
T Consensus 667 --wl~riw~l~~~~~~ar--~~g~~~d~--~~~t--d~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~ 738 (876)
T KOG0435|consen 667 --WLQRIWALVSQILQAR--DDGKAKDL--KKLT--DGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNA 738 (876)
T ss_pred --HHHHHHHHHHHHHHHH--hcCCcccc--cccc--cccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888877776531 11111110 0000 01235677899999999999999998 57899999999999876
Q ss_pred HhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCc---ccccccccc
Q psy4049 448 ANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTN---ERLWDNMRF 516 (528)
Q Consensus 448 ~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~---~~~w~~~~~ 516 (528)
+.+-+.... ..+. ....+|..++++|+|++||.++|+|..|+.... ...||++|+
T Consensus 739 l~~a~k~~~----~h~~----------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~~~~~~~WP~vd~ 796 (876)
T KOG0435|consen 739 LKKALKIVL----VHSP----------EFERALEALVIMLAPFAPHVASELWSALANDLSWVSDVKWPEVDP 796 (876)
T ss_pred HHHhhhhhh----hcCh----------HHHHHHHHHHHHHhccCchhHHHHHHHHhccccchhccCCccCCh
Confidence 555443221 1111 112456777899999999999999999996553 234888874
No 43
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.5e-60 Score=472.50 Aligned_cols=288 Identities=25% Similarity=0.392 Sum_probs=262.7
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
|++||+|||||||.+||||+++++.+|+++||+|++ |++|.+++|+||||+|++.+|+++|++++++++++.++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~--G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~ 78 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQ--GYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQ 78 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHc--CCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 85 FKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 85 ~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++|||++| .+++|+++.|.+.++++|.+|+++|+||+++.+++||.
T Consensus 79 ~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~------------------------------- 127 (314)
T cd00812 79 LKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCK------------------------------- 127 (314)
T ss_pred HHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeC-------------------------------
Confidence 999999988 67889999999999999999999999999999999981
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeec--cccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKL--SNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWG 240 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG 240 (528)
.++||||++ +++++.+.++++... +.|+..++.+.+|++ |||++ +||
T Consensus 128 -------------------~~~~~f~~l~~~~~~~~l~~~l~~~~--~~p~~~~~~~~~~l~-------isR~~---~wG 176 (314)
T cd00812 128 -------------------LLDQWFLKYSETEWKEKLLKDLEKLD--GWPEEVRAMQENWIG-------CSRQR---YWG 176 (314)
T ss_pred -------------------ccceEEEEcCcHHHHHHHHHHHHhcC--cCCHHHHHHHHHHhe-------eeeec---CCc
Confidence 136999999 999999999998864 699999999999996 99985 899
Q ss_pred cccCCCCCCeEEEeccchhhh---hhhhcC--C----------CCCC-CCccceEeeecccchhh---hHHHHHHhhcCC
Q psy4049 241 IPVPDDDTQTIYVWLDALMNY---LTVSGY--P----------DFHT-WPPHIQILGKDILKFHG---IYWPAFLIAAGL 301 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~---~~~~~~--~----------~~~~-~~~di~~~G~D~~~~h~---~~~~a~~~~~~~ 301 (528)
+|+|. ++++++||||.+++ ++.... . .|.. ||.|+++.|+||++||+ .++++++.++|+
T Consensus 177 ipvP~--~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~ 254 (314)
T cd00812 177 TPIPW--TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGL 254 (314)
T ss_pred CCcCc--ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCccc
Confidence 99997 78999999999854 433321 1 1445 79999999999999887 788899988896
Q ss_pred ---CCCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCH
Q psy4049 302 ---EPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSE 360 (528)
Q Consensus 302 ---~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~ 360 (528)
+++.++.+||+++++|+|||||+||+|++.|+++++|+|++||++++.++ .+.+|++
T Consensus 255 ~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 255 VTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred ccccCcHHheecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC--cCCCCCC
Confidence 78889999999999999999999999999999999999999999998775 7888874
No 44
>KOG0434|consensus
Probab=100.00 E-value=7.1e-58 Score=459.22 Aligned_cols=486 Identities=18% Similarity=0.290 Sum_probs=393.2
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHH-HHcCCC------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAA-IKHKLE------------ 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a-~~~g~~------------ 69 (528)
+++|....+||+++|.+|-||+..-++.|++-||.-+. ||.|-.-+|||+||+|++... +++|++
T Consensus 37 rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~--G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~k 114 (1070)
T KOG0434|consen 37 RPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQT--GHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDK 114 (1070)
T ss_pred CCceeeccCCccccCCCccchhhhhhHHHHHHHHhhcc--ccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHh
Confidence 45677889999999999999999999999999999999 999999999999999999754 345553
Q ss_pred ----HHHHHHHHHHHHHHHHhhcC--cccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 70 ----TIDFCNKISDQYKLMFKTYD--IEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~~l~--i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
.+.++.+|..+++.+..+|| |+||+-|+|+.+.+++.+.|+|.+|+++|++|++-+..+|+..|.+.|++-+..
T Consensus 115 YN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~ 194 (1070)
T KOG0434|consen 115 YNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQ 194 (1070)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcc
Confidence 25688999999999999999 789999999999999999999999999999999999999999999999987654
Q ss_pred cC-----------------CCch------hhhh-------hh--------------------------------------
Q psy4049 144 PD-----------------EKNE------EESF-------LL-------------------------------------- 155 (528)
Q Consensus 144 ~~-----------------~~~~------~~~~-------~~-------------------------------------- 155 (528)
.. |++. .-.| +|
T Consensus 195 QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~ 274 (1070)
T KOG0434|consen 195 QNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNY 274 (1070)
T ss_pred cCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccH
Confidence 32 1100 0000 00
Q ss_pred ---h---------------------------------------------cc-------------------------CCCC
Q psy4049 156 ---E---------------------------------------------HQ-------------------------IRPD 162 (528)
Q Consensus 156 ---~---------------------------------------------~~-------------------------~~~~ 162 (528)
| +| .++|
T Consensus 275 eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVD 354 (1070)
T KOG0434|consen 275 EILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVD 354 (1070)
T ss_pred HHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccc
Confidence 0 00 0112
Q ss_pred CCC--------------------------------------CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhC
Q psy4049 163 EKN--------------------------------------EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKN 204 (528)
Q Consensus 163 ~~g--------------------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 204 (528)
+.| +..|.||++.+|+.++..+.||.++.++.+.+.+-....
T Consensus 355 e~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t 434 (1070)
T KOG0434|consen 355 ESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKT 434 (1070)
T ss_pred cCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhccccc
Confidence 222 255899999999999999999999999999887655444
Q ss_pred CCcccchhhH-HHHHHHHhccCCCccccccCCCcccccccCC----C---------------------------------
Q psy4049 205 EDVVKPKKFY-NQLRNMCSEIENDISVSRPKARVHWGIPVPD----D--------------------------------- 246 (528)
Q Consensus 205 ~~~~~p~~~~-~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~----~--------------------------------- 246 (528)
.|.|...+ +++.+||++ .+||.|||+| +||+|||- +
T Consensus 435 --~WVP~~ikeKRF~NWL~n-ARDW~iSRnR---~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~it 508 (1070)
T KOG0434|consen 435 --HWVPQNIKEKRFANWLKN-ARDWNISRNR---YWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHIT 508 (1070)
T ss_pred --ccCChhhhHHHHHHHHhh-hhhccccccc---ccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCcee
Confidence 49998877 578899999 9999999998 99999992 0
Q ss_pred ------------CCCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhh---cCCCCCc
Q psy4049 247 ------------DTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIA---AGLEPPK 305 (528)
Q Consensus 247 ------------~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~---~~~~~~~ 305 (528)
-..|+|.||+|+.++.+..+||- |+. +|+|+..+|.||.+ |||+..+..+ +|.+|++
T Consensus 509 Ips~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTR--GWFYTL~VlsT~LF~kppfk 586 (1070)
T KOG0434|consen 509 IPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTR--GWFYTLLVLSTALFGKPPFK 586 (1070)
T ss_pred cccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhhhcccccc--chhhHHHHHHHHHcCCCcch
Confidence 14588999999999999999985 677 99999999999999 9998876654 4789999
Q ss_pred EEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 306 SFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGT-NHSDSNYSETKAKNILNAELANTLGNLLNRCL 383 (528)
Q Consensus 306 ~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~-~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~ 383 (528)
+++++|.++ .+|+|||||+.|.-+|..++++||+|+||+||..+.. ..+.+.|.++.+.......+ --++|.+..+.
T Consensus 587 NvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~-lPW~NsyrF~~ 665 (1070)
T KOG0434|consen 587 NVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVL-LPWYNSYRFLV 665 (1070)
T ss_pred heeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhh-hhhhHHHHHHH
Confidence 999999885 6899999999999999999999999999999995432 24789999999988765533 34556654443
Q ss_pred hcc---cCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhHhhhccCccc
Q psy4049 384 SKS---INPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH-LANKFIDTTKPWT 459 (528)
Q Consensus 384 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~-~~n~y~~~~k~~~ 459 (528)
... .+..+..-..+. .. .+....|+|+++..+.+...+.+.|++|++..++-.+..|+. ..|+|+...+. +
T Consensus 666 qn~~~~~~~~g~~f~~~~-~~---~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRr-r 740 (1070)
T KOG0434|consen 666 QNAALLKKETGKDFVFDD-SV---TSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRR-R 740 (1070)
T ss_pred HHHHHhccccCCcccccc-cc---ccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhh-h
Confidence 321 111111111000 00 012468999999999999999999999999999999999997 68899887664 3
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC
Q psy4049 460 LRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI 504 (528)
Q Consensus 460 l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~ 504 (528)
+..++....+..++.++.++|..+.++++||.|+++|.+||.|..
T Consensus 741 lkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 741 LKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 444444567888999999999999999999999999999999964
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.8e-55 Score=455.49 Aligned_cols=412 Identities=17% Similarity=0.189 Sum_probs=306.5
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
-++|||+|+|| |++||||+|++|.+|+++||+|++ |++|.+++|+||+|++|+.+|++.|.+|+++++++.+.|++
T Consensus 24 v~~yvcgPtvy--~~~HiGHar~~v~~Dvl~R~lr~~--G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~ 99 (463)
T PRK00260 24 VKMYVCGPTVY--DYAHIGHARSFVVFDVLRRYLRYL--GYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHE 99 (463)
T ss_pred ceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhc--CCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 47899999877 699999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCc-ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 84 MFKTYDI-EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 84 ~~~~l~i-~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
++++||| .+|.+.++++ |.+.+++++++|.++|++|+++++++||+..-. ....+++. +
T Consensus 100 ~~~~Lgi~~~d~~~r~t~--~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~--~yg~ls~~----------------~ 159 (463)
T PRK00260 100 DMDALNVLPPDIEPRATE--HIPEIIELIERLIDKGHAYEADGDVYFDVRKFP--DYGKLSGR----------------N 159 (463)
T ss_pred HHHHcCCCCCCccccccc--cHHHHHHHHHHHHHCCCEEEecCeEEEeccccc--ccccCCCC----------------C
Confidence 9999999 5677877775 999999999999999999999999999987432 22222221 0
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
.+ -...|..++. ...++...+|. .|.+.. .|-+.|. .+||..
T Consensus 160 ~~------~~~~~~~~~~----------~~~K~~~~DF~-----Lwk~~~----------~~~~~w~-------s~~g~g 201 (463)
T PRK00260 160 LD------ELQAGARVEV----------AEEKRDPLDFA-----LWKAAK----------PGEPSWE-------SPWGKG 201 (463)
T ss_pred HH------HHhccCcCCc----------ccCCCCccccc-----eecCCC----------CCCCCCC-------CCCCCC
Confidence 00 0001111100 00000000000 011100 0011111 134444
Q ss_pred cCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCCCcc
Q psy4049 243 VPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDGVKM 320 (528)
Q Consensus 243 ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g~Km 320 (528)
.|+ |. +...+-...+|. |.|||.+|+|++|||+.+..++..++..+|+.++|+| |++.++|+||
T Consensus 202 rpg--------Whiecsam~~~~lg~------~~Dih~gG~DlifpHh~neiaqs~a~~g~p~~~~w~H~g~v~~~G~KM 267 (463)
T PRK00260 202 RPG--------WHIECSAMSTKYLGE------TFDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKM 267 (463)
T ss_pred CCC--------hhHHHHHHHHHhcCC------CcceecCccccCCCchHhHHHHHHHhcCCCcceEEEEccEEccCCCcc
Confidence 332 11 111111122222 7899999999999999999999877433899999999 7889999999
Q ss_pred cccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccch
Q psy4049 321 SKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNREC 400 (528)
Q Consensus 321 SkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~ 400 (528)
|||+||+|++.|++++||+|++||++++ ++++++++|+.+.++++.+ ..+++++++.++..
T Consensus 268 SKS~GN~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~--~~~rl~~~~~~~~~---------------- 328 (463)
T PRK00260 268 SKSLGNFFTIRDLLKKYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKK--ALERLYNALAETAL---------------- 328 (463)
T ss_pred cCcCCCCCCHHHHHHHcCchHhHHHHHh-CCCCCCCccCHHHHHHHHH--HHHHHHHHHHHhhh----------------
Confidence 9999999999999999999999999996 5679999999999887744 47788888876541
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHH
Q psy4049 401 YEVMFTKEPVLTELIENCQTLHEDVKLHYS-EFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEV 479 (528)
Q Consensus 401 ~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e-~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~ 479 (528)
...|.+++..+..+.+.+.++|+ +|++++|+..|+++++.+|.|++... ...+..+...+..+
T Consensus 329 -------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~~---------~~~~~~~~~~~~~~ 392 (463)
T PRK00260 329 -------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETKD---------KEAAAALAALLRAL 392 (463)
T ss_pred -------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccc---------HHHHHHHHHHHHHH
Confidence 12356777888899999999995 99999999999999999999986521 12333344445555
Q ss_pred HHHHHHcc----------cccchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 480 LRICGIGL----------QPIVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 480 l~~l~~ll----------~P~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
+.+|++.- ....|..++++.+.+..+++.++|+.+|.||++|.+..|
T Consensus 393 ~~ilG~~~~~~~~~~~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi 449 (463)
T PRK00260 393 ADVLGLEQDEEALFEAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGI 449 (463)
T ss_pred HHhcCCCchhhhhhhcccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCc
Confidence 55555421 123466788888888888899999999999999988766
No 46
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=9e-55 Score=450.44 Aligned_cols=430 Identities=18% Similarity=0.205 Sum_probs=305.3
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|||+|+||. .+||||+|++|.+|+++||+|+. ||+|.||+|+||+|++|+.+|+++|++|.+++++|.+.|.++
T Consensus 82 ~~Y~CGpTvYd--~~HIGhaR~~V~~Dvl~R~Lr~~--Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 82 GMYVCGVTAYD--LSHIGHARVYVTFDVLYRYLKHL--GYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred eEEEeCCccCC--CCccccchhhHHHHHHHHHHHhc--CCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 58999999987 99999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCC
Q psy4049 85 FKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEK 164 (528)
Q Consensus 85 ~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (528)
++.|||. +.++.|..++|.+.+++++++|+++|++|++++.||||+.. +-....+++.- .+. -..
T Consensus 158 ~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--f~~YG~Ls~~~--------l~~----l~~ 222 (557)
T PLN02946 158 MAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--FPEYGKLSGRK--------LED----NRA 222 (557)
T ss_pred HHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--chhhhhcCCCC--------hhH----hhc
Confidence 9999998 54556767789999999999999999999999999999873 32223333220 000 000
Q ss_pred CCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccC
Q psy4049 165 NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP 244 (528)
Q Consensus 165 g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip 244 (528)
|.++.....-..|.+ |-| |.... .|.+-|. .+||...|
T Consensus 223 g~rv~~~~~K~np~D--------FaL-----------------WK~~k----------~ge~~W~-------SPWG~GRP 260 (557)
T PLN02946 223 GERVAVDSRKKNPAD--------FAL-----------------WKAAK----------EGEPFWD-------SPWGPGRP 260 (557)
T ss_pred CCCCCcccccCCccc--------cce-----------------eccCC----------CCCCCcc-------CCCCCCCC
Confidence 111111100111111 111 11100 0112232 25666665
Q ss_pred CCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCCCcccc
Q psy4049 245 DDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDGVKMSK 322 (528)
Q Consensus 245 ~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g~KmSk 322 (528)
+ |. ++..+-...+|. +.|||.+|.|++||||.++.|+..+.-.+++.++|+| ||++++|+||||
T Consensus 261 G--------WHIECSaMs~~~lG~------~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSK 326 (557)
T PLN02946 261 G--------WHIECSAMSAAYLGH------SFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSK 326 (557)
T ss_pred c--------HHHHHHHHHHHHcCC------CeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCC
Confidence 3 22 222222223333 6899999999999999999999988655678899999 899999999999
Q ss_pred cCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhh
Q psy4049 323 SVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYE 402 (528)
Q Consensus 323 S~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~ 402 (528)
|+||+++++|++++|++|++|||+++ .+++++++|+++.+.++.+ ...++++++.++.....+.......
T Consensus 327 SlGN~itl~dll~~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~--~l~~l~~~~~~~~~~l~~~~~~~~~------- 396 (557)
T PLN02946 327 SLGNFFTIRQVIDLYHPLALRLFLLG-THYRSPINYSDVQLESASE--RIFYIYQTLHDCEESLQQHDSTFEK------- 396 (557)
T ss_pred cCCCcCCHHHHHHhcCccceeeeeec-cCCCCCcEecHHHHHHHHH--HHHHHHHHHHHHHHHhhhhcccccc-------
Confidence 99999999999999999999999996 5689999999999988743 4668888888886543211000000
Q ss_pred hccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHH
Q psy4049 403 VMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLR 481 (528)
Q Consensus 403 ~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~ 481 (528)
...+..+...+..+...+.++| +|||++.|+..|+++++.+|.+++..+. .........+..+...+..++.
T Consensus 397 -----~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 469 (557)
T PLN02946 397 -----DSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKG--KKQEKRLESLAALEKKIRDVLS 469 (557)
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhccc--ccccchHHHHHHHHHHHHHHHH
Confidence 0011112234556667787887 5899999999999999999998864210 0000001112222333344445
Q ss_pred HHHHcccc-----------------cchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 482 ICGIGLQP-----------------IVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 482 ~l~~ll~P-----------------~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
+|+++-.| +.|..++++.+.+..+++.++|+.+|.||++|.+..|
T Consensus 470 vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi 531 (557)
T PLN02946 470 VLGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGI 531 (557)
T ss_pred HcCCCchhhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC
Confidence 55543221 1134567777888888899999999999999998776
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=3.2e-54 Score=460.28 Aligned_cols=424 Identities=17% Similarity=0.187 Sum_probs=310.4
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHH-hcCCCCeeEEeecCCCcchHHHHHHHHcCCC-HHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVK-LVNPRISSILTTGTDEHGLKIQNAAIKHKLE-TIDFCNKISDQYK 82 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr-~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~-~~~~~~~~~~~~~ 82 (528)
++|||||++| +.+||||+|++|.+|+++||+| .. ||+|.||+|+||+|++|+.+|++.|++ +.++++++.+.|.
T Consensus 62 ~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~--Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 62 RWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYF--GYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred EEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhc--CCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5899999999 6999999999999999999999 89 999999999999999999999999999 9999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
++++.|||.++.++++. .+|...+..++++|+++|++|+.++.++|+... |-.. +.
T Consensus 138 ~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~--f~~~----~~----------------- 193 (651)
T PTZ00399 138 EDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA--FRKA----GH----------------- 193 (651)
T ss_pred HHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh--cccc----hh-----------------
Confidence 99999999987655444 459999999999999999999988888887763 2100 00
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhcc-CCCcc-ccccCCCc-cc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEI-ENDIS-VSRPKARV-HW 239 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~-~~dw~-isR~~~~~-~W 239 (528)
.+|. +.|....+........+ +.+-+ ++|+..|+ =|
T Consensus 194 ~Yg~-----------------------------------------L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLW 232 (651)
T PTZ00399 194 VYPK-----------------------------------------LEPESVADEDRIAEGEGALGKVSGEKRSPNDFALW 232 (651)
T ss_pred hHHh-----------------------------------------hChhhcCCHHHHhcccCCccccCcCCCCCccHHhh
Confidence 0000 11111110111111111 22222 55654221 28
Q ss_pred ccccCCCCCCeEEEeccchhhhhhhhcCCCC-----------CCCCccceEeeecccchhhhHHHHHHhhc-CCCCCcEE
Q psy4049 240 GIPVPDDDTQTIYVWLDALMNYLTVSGYPDF-----------HTWPPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSF 307 (528)
Q Consensus 240 G~~ip~~~~~~~~~wfds~~~~~~~~~~~~~-----------~~~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~ 307 (528)
|.+.|+++. |+ |.||+ |.|.| ...|.|||.+|.|++||||.+..|+..|. |..++.++
T Consensus 233 k~~kpgep~-----W~-SpwG~----GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y 302 (651)
T PTZ00399 233 KASKPGEPS-----WD-SPWGK----GRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNY 302 (651)
T ss_pred CCCCCCCCC-----CC-CCCCC----CCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcE
Confidence 888887654 54 56665 44442 11478999999999999999999999886 54588999
Q ss_pred EEe-eeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4049 308 LVH-SHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKS 386 (528)
Q Consensus 308 ~~h-g~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~ 386 (528)
|+| ||++++|+|||||+||+|+|+|++++||+|++||++++. +++++++|+++.+.+..+. .+.+.|++.|+.+..
T Consensus 303 ~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~--~~~l~n~~~rl~s~l 379 (651)
T PTZ00399 303 FLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEK--DKVFFNFFANVKIKL 379 (651)
T ss_pred EEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999965 7899999999999887554 456777777776543
Q ss_pred cCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc
Q psy4049 387 INPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK 465 (528)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~ 465 (528)
.+.. .+. .. .....|++++..+..+...+.++| ++|+++.|+..|++|++.+|.|++..+ ...
T Consensus 380 ~~~~--~~~--~~------~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~~~~------~~~ 443 (651)
T PTZ00399 380 RESE--LTS--PQ------KWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLNSGE------QPS 443 (651)
T ss_pred hhcc--ccc--cc------cCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccc------cch
Confidence 2211 110 00 124568899999999999999998 789999999999999999999996310 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccc-------------cchHHHHHHHHHcCCCC----cc-----------ccccccccc
Q psy4049 466 IEELNLVLGVTFEVLRICGIGLQP-------------IVPKLADKLLTRLGIPT----NE-----------RLWDNMRFS 517 (528)
Q Consensus 466 ~~~~~~~~~~l~~~l~~l~~ll~P-------------~~P~~~e~l~~~l~~~~----~~-----------~~w~~~~~~ 517 (528)
...+..+...+..++.+|++.-.. .++...+.+.+.+...+ .. ++|..+|.|
T Consensus 444 ~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~~~~~~~~~~i~~l~~~R~~~R~~a~~~~~~~~~~~~~~~~~~~~D~i 523 (651)
T PTZ00399 444 APLLRSVAQYVTKILSIFGLVEGSDGLGSQGQNSTSENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKL 523 (651)
T ss_pred HHHHHHHHHHHHHHHhcccCCcchhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhccccccchhhhhhHHHHHHHH
Confidence 112333445555666666652101 01112334433333332 22 679999999
Q ss_pred Cc-cchhccc
Q psy4049 518 DN-DMFNDLI 526 (528)
Q Consensus 518 ~~-~~~~~~~ 526 (528)
|+ +|.+..|
T Consensus 524 Rd~~L~~~Gi 533 (651)
T PTZ00399 524 RDEWLPNLGI 533 (651)
T ss_pred HHHHHHHCCC
Confidence 99 5877655
No 48
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-54 Score=428.14 Aligned_cols=411 Identities=19% Similarity=0.211 Sum_probs=299.1
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|||+|++|. ..||||+|++|..|++.|||+.. ||.|.||.+++|.+++|..+|.+.|.++.+++++|.++|.++
T Consensus 24 ~mYvCGpTVYd--~~HIGhaRt~V~fDvl~R~L~~~--Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D 99 (464)
T COG0215 24 KMYVCGPTVYD--YAHIGHARTYVVFDVLRRYLRYL--GYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFED 99 (464)
T ss_pred EEEecCCccCC--ccccccCcceehHHHHHHHHHHh--CCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 68999999998 99999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcc-cCCCCCCCCHHHHHHHHHHHHHHhhCCCeecc-ceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 85 FKTYDIE-YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPN-KYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 85 ~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
++.|||. +|...+.++ |...+.+++++|.++|++|.. .+.|+|++.. |-....+++.- ..+..
T Consensus 100 ~~aL~v~~p~~~PraTe--~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~--f~~YG~LS~~~--~le~l--------- 164 (464)
T COG0215 100 MDALNVLPPDIEPRATE--HIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK--FKDYGKLSGRD--SLEEL--------- 164 (464)
T ss_pred HHHhCCCCCcccCcHhh--CHHHHHHHHHHHHHCCceEEecCCcEEEeccc--chhhHhhcCCC--ChhHH---------
Confidence 9999995 688877777 999999999999999999998 5789998874 32333333210 00000
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
..|.++.+...-..|.. |+- |.+.+ .|.+.|. .+||..
T Consensus 165 ~~gar~~~~~~Krnp~D--------------------FvL-----WK~sk----------~gEp~W~-------SPWG~G 202 (464)
T COG0215 165 QAGARVEVDEEKRNPLD--------------------FVL-----WKAAK----------PGEPSWD-------SPWGKG 202 (464)
T ss_pred hhccccccccccCCchh--------------------hee-----eccCC----------CCCCCCC-------CCCCCC
Confidence 00111111001111111 100 11100 0223333 256666
Q ss_pred cCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCC-CCCcEEEEe-eeeeeCCCcc
Q psy4049 243 VPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGL-EPPKSFLVH-SHWTVDGVKM 320 (528)
Q Consensus 243 ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~-~~~~~~~~h-g~~~~~g~Km 320 (528)
.|+- . .|+..+-...+|. ..|||.+|.|++||||.+..|+..|... +++.++|+| ||++++|+||
T Consensus 203 RPGW---H----IECSaM~~~~LG~------~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKM 269 (464)
T COG0215 203 RPGW---H----IECSAMSTKYLGE------TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKM 269 (464)
T ss_pred CCch---h----HHHHHHHHHHhCC------CcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCc
Confidence 5531 0 1223333344444 6799999999999999999999988755 889999999 9999999999
Q ss_pred cccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccch
Q psy4049 321 SKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNREC 400 (528)
Q Consensus 321 SkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~ 400 (528)
|||+||+++++|++++|+|+++||++++ ++|+++++||++.++++.+ ...++.+++.++........
T Consensus 270 SKSLGNfiti~d~l~~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~--~l~rl~~~~~~~~~~~~~~~---------- 336 (464)
T COG0215 270 SKSLGNFITVRDLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKK--ALERLYNALRRLRDLAGDAE---------- 336 (464)
T ss_pred ccccCCeeEHHHHHhhcCHHHHHHHHHH-HHhCCccccCHHHHHHHHH--HHHHHHHHHHHHHhhccccc----------
Confidence 9999999999999999999999999995 5699999999999998754 37788888877653110000
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHH
Q psy4049 401 YEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEV 479 (528)
Q Consensus 401 ~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~ 479 (528)
.. .+..+..++.++| +|||++.|++.|.++++.+|...+.... .....+..+..+
T Consensus 337 -------~~-------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~ 392 (464)
T COG0215 337 -------LA-------DLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKS----------DAKAVLSALKAL 392 (464)
T ss_pred -------cc-------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcccc----------chHHHHHHHHHH
Confidence 00 3344555566666 5899999999999999977665543221 011222222233
Q ss_pred HHHHH-----Hccc------ccchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 480 LRICG-----IGLQ------PIVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 480 l~~l~-----~ll~------P~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
+..++ .... .......+.|.+.+..+++.++|+.+|.||++|.+..|
T Consensus 393 ~~~lg~~~l~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi 450 (464)
T COG0215 393 LAILGLKVLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGI 450 (464)
T ss_pred HHHhCchhhccccccccccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCc
Confidence 33333 2211 11456677788878888889999999999999988766
No 49
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-52 Score=436.15 Aligned_cols=403 Identities=18% Similarity=0.199 Sum_probs=291.4
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|+|+|+||. .+||||+|++|.+|+++||+|+. |++|.||+|+||+|++|+.+|++.|+++.+++++|.+.|+++
T Consensus 250 ~mYvCGPTVYd--~~HIGHaRt~V~~DVL~R~Lr~~--Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 250 RMYVCGMTVYD--YCHLGHARVMVVFDMIARWLREC--GYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred EEEecCCcCCC--CCcccchhHHHHHHHHHHHHHHc--CCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 58999999998 99999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccc-eeeccccCcCccccccccccCCCchhhhhhhhccCCCCC
Q psy4049 85 FKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK-YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDE 163 (528)
Q Consensus 85 ~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (528)
++.|||.++.+ .|...+|.+.+++++++|.++|++|++. +.||||+.+ +-....+++. +.
T Consensus 326 ~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--f~~YG~LS~~----------------~~ 386 (699)
T PRK14535 326 ADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--FAAYGQLSGK----------------SL 386 (699)
T ss_pred HHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--ccccccccCC----------------Ch
Confidence 99999998876 4555679999999999999999999874 589999884 3333333332 00
Q ss_pred CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccccc
Q psy4049 164 KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPV 243 (528)
Q Consensus 164 ~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~i 243 (528)
+ ....|..++.. ..++...+|. .|.+.. .|-+.|. .+||...
T Consensus 387 ~------~l~~g~rve~d----------~~Krnp~DFa-----LWK~sk----------~Gep~W~-------SPWG~GR 428 (699)
T PRK14535 387 D------DLRAGERVEVD----------GFKRDPLDFV-----LWKAAK----------AGEPAWE-------SPWGNGR 428 (699)
T ss_pred H------HhcCCCccccc----------cccCCccccc-----eeccCC----------CCCCCcc-------CCCCCCC
Confidence 0 00122222100 0000011111 011110 0122232 2566666
Q ss_pred CCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhc-CCC---------------CCcE
Q psy4049 244 PDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAA-GLE---------------PPKS 306 (528)
Q Consensus 244 p~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~---------------~~~~ 306 (528)
|+ |. +...+-...+|. +.|||.+|.|++||||.+..|+..+. |.. ++.+
T Consensus 429 PG--------WHIECSAMs~~~LG~------~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~ar 494 (699)
T PRK14535 429 PG--------WHIECSAMSENLFGD------TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVK 494 (699)
T ss_pred Cc--------hHHHHHHHHHHHcCC------cceeECCccccCCCCCccHHHHHHHhhCCCccccccccccccccccccc
Confidence 63 22 222222233333 67999999999999999999999774 431 4789
Q ss_pred EEEe-eeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4049 307 FLVH-SHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK 385 (528)
Q Consensus 307 ~~~h-g~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~ 385 (528)
+|+| ||++++|+|||||+||++++.|++++|++|++|||+++ ++|+++++|+.+.++++.+ ..+++.+++.++..
T Consensus 495 yWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLs-shYRspL~fS~e~Le~Ak~--~l~Rl~~~l~~~~~- 570 (699)
T PRK14535 495 YWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR-AHYRSPLNYSDAHLDDAKG--ALTRLYTTLKNTPA- 570 (699)
T ss_pred EEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc-CCCCCCCCcCHHHHHHHHH--HHHHHHHHHHhhhh-
Confidence 9999 89999999999999999999999999999999999997 5689999999999998743 35566555543210
Q ss_pred ccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccC
Q psy4049 386 SINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464 (528)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~ 464 (528)
... . ....+..+.+.+.++| +||+++.|+..|+++++.+|....
T Consensus 571 ------~~~--------------~----~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~~~~----------- 615 (699)
T PRK14535 571 ------AEF--------------M----LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTND----------- 615 (699)
T ss_pred ------ccc--------------h----hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH-----------
Confidence 000 0 0122345666777777 589999999999999998887531
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcccc-------------cchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 465 KIEELNLVLGVTFEVLRICGIGLQP-------------IVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~l~~ll~P-------------~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
..+... +..+..+++++-.+ +.|..++++.+.+..+++.++|+.+|.||++|.+..|
T Consensus 616 --~~~~~~---l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdfa~AD~IRd~L~~~GI 685 (699)
T PRK14535 616 --AQLAGC---LKALGGIIGLLQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKI 685 (699)
T ss_pred --HHHHHH---HHHHHhhcCCCccchhhhhhcccccccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCC
Confidence 011111 12223333332111 2255688888888889999999999999999988765
No 50
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-52 Score=427.47 Aligned_cols=424 Identities=17% Similarity=0.193 Sum_probs=295.3
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEee----------cCCCcchHHHHHHHHcCCCHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTT----------GTDEHGLKIQNAAIKHKLETIDFC 74 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~----------g~d~~g~~i~~~a~~~g~~~~~~~ 74 (528)
++|||+|+||- ++||||+|++|.+|+++||+|+. |++|.||+ |+|+||++|..+|++.|++|.+++
T Consensus 25 ~mYvCGpTvy~--~~HiGhar~~v~~Dvl~R~l~~~--G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 25 RLYGCGPTVYN--YAHIGNLRTYVFQDTLRRTLHFL--GYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred EEEeeCCccCC--CcccchhHHHHHHHHHHHHHHhc--CCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 58999998886 99999999999999999999999 99999998 556669999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhh
Q psy4049 75 NKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFL 154 (528)
Q Consensus 75 ~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~ 154 (528)
++|.+.|++++++|||.++.++ +..+.|.+.+++++++|.++|++|++.+.|+||+.. +-....+++.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--~~~YG~Ls~~--------- 168 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--FPSYGSLASA--------- 168 (490)
T ss_pred HHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--ccchhhhcCC---------
Confidence 9999999999999999986444 334669999999999999999999999999999863 2111222221
Q ss_pred hhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhc-cCCCcccccc
Q psy4049 155 LEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSE-IENDISVSRP 233 (528)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~-~~~dw~isR~ 233 (528)
+.+. ...|..++ ....++...+|. =|... ++++..+++.
T Consensus 169 -------~~~~------l~~g~~v~----------~~~~K~np~DFa-----------------LWK~~~~~~~~~~~W~ 208 (490)
T PRK14536 169 -------AVED------LQAGARIE----------HDTNKRNPHDFV-----------------LWFTRSKFENHALTWD 208 (490)
T ss_pred -------CHHH------hhcCCcCC----------CCCCCCCchhch-----------------hcccccCCCCCCCccc
Confidence 0000 00111110 000001111111 11110 1233334444
Q ss_pred CCCcccccccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-e
Q psy4049 234 KARVHWGIPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-S 311 (528)
Q Consensus 234 ~~~~~WG~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g 311 (528)
.+||.+.|+ |. +...+-...+|. +.|||.+|.|++||||.+++|+..+....++.++|+| |
T Consensus 209 ---SpWG~GRPG--------WHIECsaMs~~~lg~------~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g 271 (490)
T PRK14536 209 ---SPWGRGYPG--------WHIECSAMSMKYLGE------QCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHE 271 (490)
T ss_pred ---CCCCCCCCC--------hHHHHHHHHHHHcCC------ceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcC
Confidence 489999985 43 222222223333 5799999999999999999999988755688999999 7
Q ss_pred eeeeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q psy4049 312 HWTVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPD 390 (528)
Q Consensus 312 ~~~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~ 390 (528)
+++++|+|||||+||+++++|+++. ++++++||++++ .+++++++|+++.+.++.+. ..++.+++.++........
T Consensus 272 ~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~--~~rl~~~~~~~~~~~~~~~ 348 (490)
T PRK14536 272 FLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKAA--RRSLVRRVARVVDAARATT 348 (490)
T ss_pred EEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHhhhccc
Confidence 8899999999999999999999997 999999999996 66899999999999987553 5666776666543211110
Q ss_pred CCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHH
Q psy4049 391 NVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEEL 469 (528)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~ 469 (528)
... ...+.. .........+...+..+...+.++| ++||++.|+..|+++++.+|.- ...
T Consensus 349 ~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~~--------------~~~- 408 (490)
T PRK14536 349 GSV----RGTLAE-CAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSVP--------------PSL- 408 (490)
T ss_pred ccc----cccccc-cccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhh--------------HHH-
Confidence 000 000000 0000000011123445667777777 5899999999999999877641 011
Q ss_pred HHHHHHHHHHHHHHHHc-ccc------------cchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 470 NLVLGVTFEVLRICGIG-LQP------------IVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 470 ~~~~~~l~~~l~~l~~l-l~P------------~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
+...+..+..+|++. +.+ ..|..++++.+.+..++..++|..+|.||++|.+..|
T Consensus 409 --~~~~~~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~kdf~~AD~iR~~L~~~Gi 476 (490)
T PRK14536 409 --CLSVLQAMDTVLGLGLIQEATASLSAQVPAGPSEEEIGQLIEARAHARQTKDFPLADEIRDKLKAEGI 476 (490)
T ss_pred --HHHHHHHHHhhcCcccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCC
Confidence 222222333444442 111 1255688888888889999999999999999988765
No 51
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1.6e-51 Score=427.00 Aligned_cols=412 Identities=17% Similarity=0.164 Sum_probs=292.4
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
-++|||+|+||. .+||||+|++|.+|+++||+|++ ||+|.+++|+||+|++|+.+|+++|++|+++++++.+.|++
T Consensus 22 v~~yvcgptvy~--~~HiGhar~~v~~Dvl~R~lr~~--G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 22 VKMYVCGPTVYD--YCHIGHARTAIVFDVLRRYLRYL--GYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred ceEEEecCccCC--CcccccchHHHHHHHHHHHHHHc--CCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 478999997776 99999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCC-CCCCCHHHHHHHHHHHHHHhhCCCeeccc-eeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 84 MFKTYDIEYTHY-VRTTSEHHFRTVNTVWTKLKQRDSIYPNK-YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 84 ~~~~l~i~~d~~-~~t~~~~~~~~~~~~~~~L~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
++++|||++|.+ .+++ .|.+.+++++++|+++|++|+++ +.++||+.|... ...+++. ..+...-+..+-+
T Consensus 98 dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~--yG~ls~~---~~~~~~~~~~~~~ 170 (465)
T TIGR00435 98 DMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKD--YGKLSKQ---DLDQLEAGARVDV 170 (465)
T ss_pred HHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccch--hccCCCC---CHHHHhcccccCc
Confidence 999999999875 4555 49999999999999999999998 999999887432 1122211 0000000000000
Q ss_pred CCCCCCcc---cccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcc
Q psy4049 162 DEKNEGQY---VSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH 238 (528)
Q Consensus 162 ~~~g~~~~---~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~ 238 (528)
++ +++.| .+|.+.+ | |.+.|. .+
T Consensus 171 ~~-~K~~p~DF~Lwk~~~---------------------------------~-------------~~~~w~-------sp 196 (465)
T TIGR00435 171 DE-AKRNKLDFVLWKSSK---------------------------------E-------------GEPKWD-------SP 196 (465)
T ss_pred cc-ccCCCCCceeeCCCC---------------------------------C-------------CCCCCc-------CC
Confidence 00 01111 1111111 0 111221 25
Q ss_pred cccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCC
Q psy4049 239 WGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDG 317 (528)
Q Consensus 239 WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g 317 (528)
||...|+- . .+...+-...+|. +.|+|.+|.|++|+|+.++.++..++..+++.++|+| |++.++|
T Consensus 197 wG~grpgW---h----iecsam~~~~lg~------~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v~~~g 263 (465)
T TIGR00435 197 WGKGRPGW---H----IECSAMNDKYLGD------QIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDN 263 (465)
T ss_pred CCCCCCCc---H----hHHHHHHHHhcCC------CceeeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEEEecC
Confidence 66555531 1 0111111222333 7899999999999999999999888644688899999 7889999
Q ss_pred CcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcc
Q psy4049 318 VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVN 397 (528)
Q Consensus 318 ~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~ 397 (528)
+|||||+||+|+++|+++++++|++|||+++. +++++++|+++.++++.+ ..+++++++.++....... ...+
T Consensus 264 ~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~-~~~~~l~fs~~~l~~a~~--~~~rl~~~~~~~~~~~~~~-~~~~--- 336 (465)
T TIGR00435 264 EKMSKSLGNFFTVRDVLKNYDPEILRYFLLSV-HYRSPLDFSEELLEAAKN--ALERLYKALRVLDTTLAYS-GNQS--- 336 (465)
T ss_pred ccccccCCCcCCHHHHHHHCCHHHHHHHHHhC-CCCCCCccCHHHHHHHHH--HHHHHHHHHHHHHhhhccc-cccc---
Confidence 99999999999999999999999999999964 679999999999998754 4788999988775322110 0000
Q ss_pred cchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHh-HhhhccCcccccccCcHHHHHHHHHH
Q psy4049 398 RECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLAN-KFIDTTKPWTLRKENKIEELNLVLGV 475 (528)
Q Consensus 398 ~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n-~y~~~~k~~~l~~~~~~~~~~~~~~~ 475 (528)
. ..+ .....+...+.++| ++||++.|+..|+++++.+| ..++. ..+..+...
T Consensus 337 -~---------~~~----~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~------------~~~~~~~~~ 390 (465)
T TIGR00435 337 -L---------NKF----PDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSK------------ADAALLIEH 390 (465)
T ss_pred -c---------ccc----hhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcch------------HHHHHHHHH
Confidence 0 000 11223445666666 58999999999999999888 33310 112223333
Q ss_pred HHHHHHHHHHccccc-------ch----HHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 476 TFEVLRICGIGLQPI-------VP----KLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 476 l~~~l~~l~~ll~P~-------~P----~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
+..+..+|+++..+- .+ ..++++.+.+..+++.++|..+|.||++|.+..|
T Consensus 391 ~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi 452 (465)
T TIGR00435 391 LIFLESRLGLLLGLPSKPVQAGSNDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGI 452 (465)
T ss_pred HHHHHHhcccCccccchhcccccccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCC
Confidence 444444555432110 11 1367777888888889999999999999988765
No 52
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.5e-51 Score=416.77 Aligned_cols=422 Identities=16% Similarity=0.105 Sum_probs=292.3
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCc----------chHHHHHHHHcCCCHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEH----------GLKIQNAAIKHKLETIDFC 74 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~----------g~~i~~~a~~~g~~~~~~~ 74 (528)
++|+|+|+||- .+||||+|++|.+|+++||+|+. |++|.||.+++|. |++|+.+|+++|+++.+++
T Consensus 23 ~mY~CGpTVYd--~~HiGh~r~~v~~Dvl~R~l~~~--G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 23 KVYACGPTVYN--YAHIGNFRTYIFEDLLIKSLRLL--KYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred EEEeCCCCCCC--CCCccchhHHHHHHHHHHHHHHc--CCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 58999999998 99999999999999999999999 9999997666555 8999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhh
Q psy4049 75 NKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFL 154 (528)
Q Consensus 75 ~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~ 154 (528)
++|.+.|+++++.|||.++.++++ .++|.+.+++++++|.++|++|+..+.|+||+.+ +-....+++.
T Consensus 99 ~~~~~~f~~d~~~Lni~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--~~~YG~ls~~--------- 166 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--FKSYGQMAGI--------- 166 (481)
T ss_pred HHHHHHHHHHHHHcCCCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--ccchhhhcCC---------
Confidence 999999999999999999988776 4679999999999999999999999999999986 3333333322
Q ss_pred hhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccC
Q psy4049 155 LEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPK 234 (528)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~ 234 (528)
+.... ..| .|..++ +++.++...+|.- |.. ..++.+..+++.
T Consensus 167 -------~l~~l--~~~--~~~~v~----------~~~~K~np~DFaL-----WK~-----------~~~~~~~~~~w~- 208 (481)
T PRK14534 167 -------NLNDF--KDM--SVSRVE----------IDKSKRNKSDFVL-----WFT-----------NSKFKDQEMKWD- 208 (481)
T ss_pred -------CHHHH--hhh--ccCcCC----------cccCCCCcccchh-----cCc-----------CCcCCCCCCeec-
Confidence 00000 000 111111 0000111111110 110 011333445555
Q ss_pred CCcccccccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-ee
Q psy4049 235 ARVHWGIPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SH 312 (528)
Q Consensus 235 ~~~~WG~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~ 312 (528)
.+||...|+ |. +...+-...+|. +.|||.+|.|++|||+.+++|+..+....++.++|+| |+
T Consensus 209 --spWG~GrPg--------WHiECsam~~~~lg~------~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~ 272 (481)
T PRK14534 209 --SPWGFGYPS--------WHLECAAMNLEYFKS------TLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEF 272 (481)
T ss_pred --CCCCCcCCc--------HHHHHHHHHHHHcCC------cceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecE
Confidence 478887773 22 111111222221 5799999999999999999999988655688999999 79
Q ss_pred eeeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q psy4049 313 WTVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDN 391 (528)
Q Consensus 313 ~~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~ 391 (528)
++++|+|||||+||+++++|++++ ++++++||++++ .+++++++|+++.++++.+. .+++.+.++++...+.....
T Consensus 273 l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~--~~~~~~~~~~~~~~~~~~~~ 349 (481)
T PRK14534 273 LIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKIA--RENMLNKLTYFYSSLDQFDL 349 (481)
T ss_pred EEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999999986 999999999885 56899999999999987543 45555555544221110000
Q ss_pred CCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHH
Q psy4049 392 VNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELN 470 (528)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~ 470 (528)
.... . . . ..... .....+...+.++| +|||++.|+..|+++++.+|.. . .. ...
T Consensus 350 ~~~~--~-~-~-----~~~~~---~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~-~-~~---------~~~-- 404 (481)
T PRK14534 350 NLLN--K-D-L-----ENIEF---SLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLS-F-LS---------KLR-- 404 (481)
T ss_pred cccc--c-c-c-----ccchh---hhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh-h-hh---------HHH--
Confidence 0000 0 0 0 00000 01223445676777 5899999999999999988764 0 00 101
Q ss_pred HHHHHHHHHHHHHHHccc---c------cchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 471 LVLGVTFEVLRICGIGLQ---P------IVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~---P------~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
....+..++. ++.... . ..|..++.+.+.+..++..++|+.+|.||++|.+..|
T Consensus 405 -~~~~~~~~~~-lg~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kd~~~AD~iR~~L~~~Gi 467 (481)
T PRK14534 405 -LAFKFDEVLS-LGLREEILREIENHRIVIDDNMKSLIEERRLAKCEKDFKRADEIREYFASKGF 467 (481)
T ss_pred -HHHHHHHHHh-CCCCcccchhhccccccCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHCCC
Confidence 1111222221 221101 0 1355688888888889999999999999999988765
No 53
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.1e-50 Score=399.03 Aligned_cols=342 Identities=17% Similarity=0.146 Sum_probs=253.4
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|||+|+|| +++||||+|++|.+|+++||+|+. |++|.+|+|+||||+||+.+|+++|++|+++++++.+.|+++
T Consensus 11 ~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~--G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 11 TMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDA--GHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred EEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHc--CCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6999999999 799999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCc-ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccce----eeccccCcCccccccccccCCCchhhhhh---hh
Q psy4049 85 FKTYDI-EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY----KGWYCVSEESFLLEHQIRPDEKNEEESFL---LE 156 (528)
Q Consensus 85 ~~~l~i-~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~----~~~~~~~~~~~l~~~~v~~~~~~~~~~~~---~~ 156 (528)
++.||| .+|.++++++ +.+.+++++++|.++|++|+++. .|+|+... +-....+++. ..+... -+
T Consensus 87 ~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~--~~~YG~ls~~---~~~~~~~~~~~ 159 (384)
T PRK12418 87 MEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA--TPQFGYESGY---DRATMLELFAE 159 (384)
T ss_pred HHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc--hhhcccccCC---CHHHHHhhhcc
Confidence 999997 7899999998 69999999999999999999998 79998764 2222222221 000000 00
Q ss_pred ccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCC
Q psy4049 157 HQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKAR 236 (528)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~ 236 (528)
+.+-++.++++.| ..+ -|++ . ..| +.+-|.
T Consensus 160 ~~~~~~~~~K~~p--------~DF--------aLWK----------~----~~~-------------~~~~w~------- 189 (384)
T PRK12418 160 RGGDPDRPGKRDP--------LDA--------LLWR----------A----ARP-------------GEPSWP------- 189 (384)
T ss_pred cccCcccccCCCc--------ccc--------eeec----------c----CCC-------------CCCccc-------
Confidence 0000000111111 100 1100 0 001 112222
Q ss_pred cccccccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhc-CCCCCcEEEEe-eee
Q psy4049 237 VHWGIPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVH-SHW 313 (528)
Q Consensus 237 ~~WG~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~~~h-g~~ 313 (528)
.+||...|+ |. ++..+-...+|. +.|||.+|.|++|||+.++.++..++ |.+++.++|+| |++
T Consensus 190 spwG~GRPG--------WHiECsam~~~~lg~------~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l 255 (384)
T PRK12418 190 SPFGPGRPG--------WHIECSAIALNRLGS------GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMI 255 (384)
T ss_pred CCCCCCCCh--------hHHHHHHHHHHHcCC------CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEE
Confidence 256666553 22 222222233333 68999999999999999999999885 55699999999 677
Q ss_pred eeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy4049 314 TVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNV 392 (528)
Q Consensus 314 ~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~ 392 (528)
..+|+|||||+||+|++.++++. ++++++|||++ .++++++++|+++.++++.+. ..++.+++.+..
T Consensus 256 ~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~~--l~r~~~~~~~~~--------- 323 (384)
T PRK12418 256 GLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAEAR--LARWRAAAALPA--------- 323 (384)
T ss_pred CCCCCcccCcCCCcCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHHHH--HHHHHHHHhccc---------
Confidence 89999999999999999998864 77779999998 567899999999999886442 445555543210
Q ss_pred CCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhcc
Q psy4049 393 NPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTT 455 (528)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~ 455 (528)
. . .+.++.+.+.+++ +++|++.|+..|+++++.+|.|....
T Consensus 324 ~---------------~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 324 G---------------P-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDD 365 (384)
T ss_pred c---------------c-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 0 0 1223346676777 57999999999999999999997553
No 54
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2.4e-49 Score=396.53 Aligned_cols=337 Identities=16% Similarity=0.147 Sum_probs=247.3
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|||+|+|| +.+||||+|++|.+|+++||+|+. |++|.||+|+||||++|+.+|+++|++|+++++++.++|+++
T Consensus 38 ~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~--G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 38 GMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDA--GHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred eEEEeCCccC--CCcccccchHHHHHHHHHHHHHhc--CCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6899999999 599999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcc-cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccce----eeccccCcCccccccccccCCCchhhhhh---hh
Q psy4049 85 FKTYDIE-YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY----KGWYCVSEESFLLEHQIRPDEKNEEESFL---LE 156 (528)
Q Consensus 85 ~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~----~~~~~~~~~~~l~~~~v~~~~~~~~~~~~---~~ 156 (528)
+++|||. +|.++++++ +.+.+++++++|.++|++|++.+ .|+|+... +-....+++. ..+... -.
T Consensus 114 ~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~--~~~YG~Ls~~---~~~~~~~~~~~ 186 (411)
T TIGR03447 114 MEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA--TEQFGYESGY---DRATMLELFAE 186 (411)
T ss_pred HHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc--hhccccccCC---CHHHHHhhhcc
Confidence 9999986 899999988 68999999999999999999886 69998763 2222222222 000000 00
Q ss_pred ccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCC
Q psy4049 157 HQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKAR 236 (528)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~ 236 (528)
+++-++..+++.| .+ |-| |.+..- +-+.|.
T Consensus 187 ~~~~~~~~~K~~p--------~D--------FaL-----------------WK~~~~----------~e~~w~------- 216 (411)
T TIGR03447 187 RGGDPDRPGKRDP--------LD--------ALL-----------------WRAARE----------GEPSWD------- 216 (411)
T ss_pred cccCcccccCCCC--------cc--------cce-----------------eCCCCC----------CCCCcc-------
Confidence 0000111111111 00 000 111000 011221
Q ss_pred cccccccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhc-CCCCCcEEEEe-eee
Q psy4049 237 VHWGIPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVH-SHW 313 (528)
Q Consensus 237 ~~WG~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~~~h-g~~ 313 (528)
.+||...|+ |. ++..+-...+|. +.|+|.+|.|++|+|+.+..++..++ |..++.++|+| |++
T Consensus 217 spwG~GRPG--------WHiECsam~~~~lg~------~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l 282 (411)
T TIGR03447 217 SPFGPGRPG--------WHIECSAIATNRLGA------GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMI 282 (411)
T ss_pred CCCCCCCCh--------hHHHHHHHHHHHcCC------ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEE
Confidence 256665553 22 111222222332 67999999999999999999999886 54589999999 788
Q ss_pred eeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy4049 314 TVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNV 392 (528)
Q Consensus 314 ~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~ 392 (528)
.++|+|||||+||+|+++|+++. ++++++|||++ .++|+++++|+++.++++.+ ..+++.+++.+..
T Consensus 283 ~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~~a~~--~l~rl~~~~~~~~--------- 350 (411)
T TIGR03447 283 GLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLL-AGHYRQDRDWTDAVLAEAEA--RLARWRAALAATD--------- 350 (411)
T ss_pred CcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEe-cCCCCCCCccCHHHHHHHHH--HHHHHHHHHhhcc---------
Confidence 99999999999999999999986 99999999999 56789999999999998643 3555655553210
Q ss_pred CCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhH
Q psy4049 393 NPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANK 450 (528)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~ 450 (528)
. . .+..+...+.++| +|||++.|+..|+++++.+|.
T Consensus 351 ~--------------~--------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~ 387 (411)
T TIGR03447 351 A--------------P--------DATDLIARLRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred c--------------c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 0 0 1122334555666 589999999999999986654
No 55
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=7.2e-45 Score=345.84 Aligned_cols=286 Identities=23% Similarity=0.315 Sum_probs=197.5
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|+|+|+||- .+||||+|++|..|++.|+|+.. |++|.+|.+++|.+++|+.+|++.|+++.++++++.++|.++
T Consensus 10 ~~Y~CGPTVYd--~~HiGhaR~~v~~D~l~R~L~~~--g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d 85 (300)
T PF01406_consen 10 RMYVCGPTVYD--YAHIGHARTYVFFDVLRRYLEYL--GYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFED 85 (300)
T ss_dssp EEEEEEEBTTS----BHHHHHHHHHHHHHHHHHHHT--T-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCC--CCCCcceeeeeeHHHHHHHHHHc--CCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 58999999998 99999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCccc-CCCCCCCCHHHHHHHHHHHHHHhhCCCeeccc-eeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 85 FKTYDIEY-THYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK-YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 85 ~~~l~i~~-d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++|||.. +.+.+.++ |.+.+.+++++|.++|++|+.. +.++|+... +-....+++. ..+....+.....+
T Consensus 86 m~~Lnv~~p~~~prate--~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~--~~~YG~Ls~~---~~~~l~~~~~~~~~ 158 (300)
T PF01406_consen 86 MKALNVLPPDHYPRATE--HIPEIIELIEKLIDKGHAYESEDGSVYFDVSK--FPDYGKLSNQ---DLEDLEAGARVEVD 158 (300)
T ss_dssp HHHTT----SEEEEGGG--GHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG--STTTTTTTT----SHHHHHHCHHHTT-
T ss_pred HHHcCCCCCccccchhc--cHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc--cccccccccc---chhhHHhhhhcccc
Confidence 99999975 68877676 9999999999999999999999 999998863 2111111111 00000000000000
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
. .-..|.++. | |.... .+.+-|. .+||..
T Consensus 159 -~--------~K~~p~DFa--------L-----------------WK~~~----------~~e~~w~-------spwG~G 187 (300)
T PF01406_consen 159 -Y--------EKRNPRDFA--------L-----------------WKAAK----------PGEPSWD-------SPWGKG 187 (300)
T ss_dssp -T--------TSSSTT-EE--------E-----------------EEE------------TTS--B---------TTSSE
T ss_pred -c--------ccCCCccee--------e-----------------eeccc----------ccCCccc-------CCCccC
Confidence 0 001111110 0 00000 0011111 246655
Q ss_pred cCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCCCcc
Q psy4049 243 VPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDGVKM 320 (528)
Q Consensus 243 ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g~Km 320 (528)
.|+ |- +...+-...+|. +.|||.+|.|++|||+.+..|+..+...+++.++|+| |++.++|+||
T Consensus 188 RPG--------WHiECsam~~~~lG~------~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KM 253 (300)
T PF01406_consen 188 RPG--------WHIECSAMSMKYLGD------TFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKM 253 (300)
T ss_dssp EE---------HHHHHHHHHHHHHTT------SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE-
T ss_pred cCc--------eeeehHHHHHHHcCC------CceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccc
Confidence 552 22 222222233443 6899999999999999999999988755899999999 8999999999
Q ss_pred cccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHH
Q psy4049 321 SKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNIL 367 (528)
Q Consensus 321 SkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~ 367 (528)
|||+||+++++|++++|+++++||++++ ++|+++++|+++.++++.
T Consensus 254 SKSlgN~~~i~dll~~~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 254 SKSLGNFITIRDLLKKYSPDALRLFLLS-THYRKPLNFSEENLEEAK 299 (300)
T ss_dssp -TTTT---BHHHHHTTS-HHHHHHHHHT-S-TTS-EEE-HHHHHHHH
T ss_pred cccCCCEEEHHHHhhcCCHHHHHHHHhc-CCCCCccccCHHHHHHhc
Confidence 9999999999999999999999999995 569999999999998763
No 56
>KOG0437|consensus
Probab=100.00 E-value=3e-42 Score=349.46 Aligned_cols=485 Identities=17% Similarity=0.210 Sum_probs=358.8
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-------CCCH----
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-------KLET---- 70 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-------g~~~---- 70 (528)
+++|||++.|.||.||.||+||+++.--.|+..-|.|++ |++|++.+|++|.|.||...|+++ |.+|
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~--Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQ--GKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhc--CceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 578999999999999999999999999999999999999 999999999999999999887653 2211
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHhhcCccc
Q psy4049 71 ----------------------------------------------------------IDFCNKISDQYKLMFKTYDIEY 92 (528)
Q Consensus 71 ----------------------------------------------------------~~~~~~~~~~~~~~~~~l~i~~ 92 (528)
..|..++-..-.++++++|...
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 3456666677788999999877
Q ss_pred C---CCCCCC-CHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhh---------------
Q psy4049 93 T---HYVRTT-SEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESF--------------- 153 (528)
Q Consensus 93 d---~~~~t~-~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~--------------- 153 (528)
| .|+.|. .|.|..+|+|.|.+|.+.|.|..+++...|||.+++...|++....++.++..|
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l 279 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKAL 279 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhc
Confidence 6 677774 899999999999999999999999999999999999998887655433210000
Q ss_pred ----------------------------------------------hh--------------------------------
Q psy4049 154 ----------------------------------------------LL-------------------------------- 155 (528)
Q Consensus 154 ----------------------------------------------~~-------------------------------- 155 (528)
+|
T Consensus 280 ~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~i 359 (1080)
T KOG0437|consen 280 SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLI 359 (1080)
T ss_pred cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhc
Confidence 00
Q ss_pred -----------hc-------------------cCCCC------------------------------------CC-----
Q psy4049 156 -----------EH-------------------QIRPD------------------------------------EK----- 164 (528)
Q Consensus 156 -----------~~-------------------~~~~~------------------------------------~~----- 164 (528)
+. +.+-| ..
T Consensus 360 Ga~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~a 439 (1080)
T KOG0437|consen 360 GAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAA 439 (1080)
T ss_pred CCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhH
Confidence 00 00000 00
Q ss_pred -----------------------------------------CC-------------------------CcccccCCCCCc
Q psy4049 165 -----------------------------------------NE-------------------------GQYVSIESNQPV 178 (528)
Q Consensus 165 -----------------------------------------g~-------------------------~~~~~~~~g~~~ 178 (528)
|. .-++..++|..+
T Consensus 440 e~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeC 519 (1080)
T KOG0437|consen 440 EVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDEC 519 (1080)
T ss_pred HHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCce
Confidence 00 113556789999
Q ss_pred EEeeeceeeeecc--ccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEecc
Q psy4049 179 EWVEEQNYMFKLS--NYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLD 256 (528)
Q Consensus 179 ~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfd 256 (528)
.+.+.+|||++.. .|+....+.++... ...+..++.++.-|.. +..|+.||+ .+-|+.+|.++...+++--|
T Consensus 520 iVAL~DQWYldYgE~eWKk~a~~cLe~l~--~f~dEtR~~fE~tLdW-L~~wacsRs---yGLGTrlPWD~qyLvESLSD 593 (1080)
T KOG0437|consen 520 IVALCDQWYLDYGEAEWKKQAKECLENLN--TFSDETRNGFEDTLDW-LGQWACSRS---YGLGTRLPWDEQYLVESLSD 593 (1080)
T ss_pred EEEeccchhhhcCcHHHHHHHHHHHhhhh--ccCHHHHHHHHHHHHH-HHhhhhhcc---ccCCCCCCCcHHHHHHhcch
Confidence 9999999999985 48888889988775 4555678888888888 899999998 68999999987666666666
Q ss_pred chhhh--hh---------------------------------hhc-CC---------------CCCC-CCccceEeeecc
Q psy4049 257 ALMNY--LT---------------------------------VSG-YP---------------DFHT-WPPHIQILGKDI 284 (528)
Q Consensus 257 s~~~~--~~---------------------------------~~~-~~---------------~~~~-~~~di~~~G~D~ 284 (528)
|.++- .+ .-+ ++ +|+. ||.|+.+.|+|+
T Consensus 594 STIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDL 673 (1080)
T KOG0437|consen 594 STIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDL 673 (1080)
T ss_pred hHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccc
Confidence 65531 11 000 00 0455 799999999999
Q ss_pred cchhhhHHHHHHhhc--CCCCCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHH
Q psy4049 285 LKFHGIYWPAFLIAA--GLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETK 362 (528)
Q Consensus 285 ~~~h~~~~~a~~~~~--~~~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~ 362 (528)
+..|..|+..-..|+ ...+|+.+-.+||+++|++|||||.||+.++++-++++|+|+.|+.|+-.+....|.||....
T Consensus 674 i~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~ 753 (1080)
T KOG0437|consen 674 IPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEAN 753 (1080)
T ss_pred cccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhc
Confidence 987766533222221 446899999999999999999999999999999999999999999999877777899998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHH-H
Q psy4049 363 AKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDS-I 441 (528)
Q Consensus 363 ~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~-l 441 (528)
..++ .-++.+.+..+..+..+... ..... .....|+.|...++.+.+...++|++..|..|+.+ .
T Consensus 754 AnAa-----ILRLyt~~ew~eEm~~~~s~-LrtGp--------~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gf 819 (1080)
T KOG0437|consen 754 ANAA-----ILRLYTYVEWIEEMCENRSS-LRTGP--------ASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGF 819 (1080)
T ss_pred ccHH-----HHHHHHHHHHHHHHHhhHHh-hccCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 6554 22556666666655432211 00000 01367999999999999999999999999999987 4
Q ss_pred HHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCc--ccccccccccCc
Q psy4049 442 ILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTN--ERLWDNMRFSDN 519 (528)
Q Consensus 442 ~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~--~~~w~~~~~~~~ 519 (528)
+++.. +..+|...- .+. .-...+...+++-..||+||+||++|.||+.+..+.. ...||.++.-++
T Consensus 820 yd~qa-ArD~Yrel~-----g~~------mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~~wP~~s~~~e 887 (1080)
T KOG0437|consen 820 YDLQA-ARDMYRELC-----GEG------MHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWPFVSPPDE 887 (1080)
T ss_pred HHHHH-HHHHHHHHh-----ccc------ccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCCceeecCCCCCCCHHH
Confidence 55543 333333211 010 1112334567777889999999999999999876552 347888775554
Q ss_pred c
Q psy4049 520 D 520 (528)
Q Consensus 520 ~ 520 (528)
.
T Consensus 888 ~ 888 (1080)
T KOG0437|consen 888 K 888 (1080)
T ss_pred H
Confidence 3
No 57
>KOG2007|consensus
Probab=100.00 E-value=2e-40 Score=325.05 Aligned_cols=363 Identities=19% Similarity=0.199 Sum_probs=262.6
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH--cCCCH---HHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK--HKLET---IDFCNKISD 79 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~--~g~~~---~~~~~~~~~ 79 (528)
++|+|+|+.|. .-||||||+||..|++.|+++..+ ||+|.||++++|.+++|+.+|.+ .+..| .+....|.+
T Consensus 57 ~wY~CGpTvYD--~SHmGHArsYVsfDIlrRiL~dyf-gy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~ 133 (586)
T KOG2007|consen 57 TWYICGPTVYD--SSHMGHARSYVSFDILRRILRDYF-GYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEE 133 (586)
T ss_pred EEEEecCcccc--hhhhhhhhhhhhHHHHHHHHHHHc-CcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence 58999999998 999999999999999999999444 99999999999999999999972 33344 333336779
Q ss_pred HHHHHHhhcCcc-cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhcc
Q psy4049 80 QYKLMFKTYDIE-YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQ 158 (528)
Q Consensus 80 ~~~~~~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 158 (528)
+|.++|.+|++- ++...|.++ |...+..++++++++|++|..++.|||+...-. -....+.|.- +
T Consensus 134 eF~~DM~~LnvLpPtv~tRVSe--yvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~-~~YgKL~G~~---------~-- 199 (586)
T KOG2007|consen 134 EFLQDMAALNVLPPTVQTRVSE--YVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP-HSYGKLVGQR---------K-- 199 (586)
T ss_pred HHHHHHHHhCCCCCcccchhhh--chHHHHHHHHHHHhCCceeeeCCcEEEeccccc-chhhhhcCch---------h--
Confidence 999999999996 467756666 999999999999999999999999999886322 0111222210 0
Q ss_pred CCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcc
Q psy4049 159 IRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH 238 (528)
Q Consensus 159 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~ 238 (528)
. -..|..+....+-..|-+ ..-|-.+ +.|-|-|. .+
T Consensus 200 ~--~~~gEg~l~ds~KR~p~D-----------------FALWKAs------------------K~gEP~We-------SP 235 (586)
T KOG2007|consen 200 N--LQEGEGVLSDSRKRSPAD-----------------FALWKAS------------------KPGEPSWE-------SP 235 (586)
T ss_pred h--cccCcCccccccCCChhh-----------------hhhhhhc------------------CCCCCCCC-------CC
Confidence 0 000110000000000000 0001000 11344444 36
Q ss_pred cccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcC-CCCCcEEEEe-eeeeeC
Q psy4049 239 WGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAG-LEPPKSFLVH-SHWTVD 316 (528)
Q Consensus 239 WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~-~~~~~~~~~h-g~~~~~ 316 (528)
||...|+ ..+ +...+--..+|. ..|||.+|.|+.||||.+..|+..|.- ..+..++|+| |+++++
T Consensus 236 WG~GRPG---WHI----ECSaMas~~lG~------~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~ 302 (586)
T KOG2007|consen 236 WGKGRPG---WHI----ECSAMASAILGS------QLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTIN 302 (586)
T ss_pred CCCCCCC---cee----eeHHHHHHhhcc------ccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeec
Confidence 7766663 221 111111122233 579999999999999999999998864 4568999999 999999
Q ss_pred CCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc
Q psy4049 317 GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLV 396 (528)
Q Consensus 317 g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~ 396 (528)
|+|||||++|+|+++|+++.|+|+++|++++... ++++++|+...++.+. .+...+.||+.-+..+..... +
T Consensus 303 g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~-wr~~ldYs~s~m~~a~--q~e~~~~~ff~~~~al~~~~~---~-- 374 (586)
T KOG2007|consen 303 GEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQ-WRSPLDYSDSTMEQAL--QLEKSLNNFFLDVKALLRGAK---P-- 374 (586)
T ss_pred cchhhhhhccceeHHHHHHhcCHHHHHHHHHHHH-hcCcCCchHHHHHHHH--HHHHHHHHHHHHHHHHHhccc---h--
Confidence 9999999999999999999999999999999765 7999999999887653 245566666544443322210 0
Q ss_pred ccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccC
Q psy4049 397 NRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTK 456 (528)
Q Consensus 397 ~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k 456 (528)
++ .+.+.+.++++.+......|..++ ++|+.+.++..+.+++..+|.|+....
T Consensus 375 ----~~---~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 375 ----FE---KLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG 428 (586)
T ss_pred ----hh---ccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhc
Confidence 11 245788999999999999997776 789999999999999999999997765
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5e-41 Score=354.75 Aligned_cols=369 Identities=18% Similarity=0.166 Sum_probs=276.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++.|..++|||+|++||||+|+++++|+++|++|+. |++|.++.++||+|+++...+...+..++++++++.+.|+
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~--G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFA--GYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHc--CCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999 9999999999999999999998888889999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCee-ccceeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIY-PNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
+++++|||.+|.|.++++..+.+.++++++.|.++|++| +.++.++++.. .+..+ . +++..
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~--~~~~~-----~-----------~~vl~ 249 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT--EFGDD-----K-----------DRVLI 249 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch--hhCCC-----C-----------CeEEE
Confidence 999999999999888888888889999999999999999 76665555432 22100 0 00000
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccc
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
. ..|+++-
T Consensus 250 k----------sdG~~~Y-------------------------------------------------------------- 257 (507)
T PRK01611 250 K----------SDGTYTY-------------------------------------------------------------- 257 (507)
T ss_pred E----------CCCCccc--------------------------------------------------------------
Confidence 0 1122110
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccc-hhhhHHHHHHhhcCCCCCc-EEEEe---eeee-e
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILK-FHGIYWPAFLIAAGLEPPK-SFLVH---SHWT-V 315 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~~~-~~~~h---g~~~-~ 315 (528)
+...++|...- ++++...|++.|.||.. |..++ +.+.++|..+.. .++.| |++. -
T Consensus 258 -------------~t~Dia~~~~k----~~~~d~~i~V~g~~q~~hf~~~~--~~~~~lg~~~~~~~~~~h~~~glv~~~ 318 (507)
T PRK01611 258 -------------FTRDIAYHLYK----FERFDRVIYVVGADHHGHFKRLK--AALKALGYDPDALEVLLHQMVGLVRGG 318 (507)
T ss_pred -------------hHHHHHHHHHH----HhhcCEEEEEECCChHHHHHHHH--HHHHHcCCCcccceEEEEEEEEeeECC
Confidence 00000000000 00012337889999986 34444 566778876553 66777 4443 3
Q ss_pred CCCcccccCCCccCcchhhhh-cCc----------------hHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Q psy4049 316 DGVKMSKSVGNVVDPMSKLSD-FTS----------------CGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNL 378 (528)
Q Consensus 316 ~g~KmSkS~gn~i~~~~~~~~-~~~----------------d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~ 378 (528)
+|+|||||+||+|++.|++++ +|. |++||++++.. ..+++.|+++.+.+..+++.. ++++.
T Consensus 319 ~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~-~~~~~~Fd~~~~~~~~~~~~~-yvqYa 396 (507)
T PRK01611 319 EGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRS-RDKDLDFDLDLALSFEGNNPP-YVQYA 396 (507)
T ss_pred CCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcC-CCCCCccCHHHHHhhcCCCcH-HHHHH
Confidence 678999999999999999999 888 99999999775 589999999998766443334 88999
Q ss_pred HHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcc
Q psy4049 379 LNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPW 458 (528)
Q Consensus 379 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 458 (528)
+.|+.++..+............+ ..+.+++++..+..++..+.+++++++++.++.++++|+..+|+||+..+
T Consensus 397 ~aR~~sil~k~~~~~~~~~~~~l-----~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~-- 469 (507)
T PRK01611 397 HARICSILRKAAEAGIDLLLALL-----TEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL-- 469 (507)
T ss_pred HHHHHHHHHhhhccCcccccccc-----CCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC--
Confidence 99999877543211100000001 14779999999999999999999999999999999999999999998653
Q ss_pred cccccC--cHHHHHHHHHHHHHHHHHHHHcccccch
Q psy4049 459 TLRKEN--KIEELNLVLGVTFEVLRICGIGLQPIVP 492 (528)
Q Consensus 459 ~l~~~~--~~~~~~~~~~~l~~~l~~l~~ll~P~~P 492 (528)
+..+. .+..+..++..+..+|+..+.||.--.|
T Consensus 470 -l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 470 -LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 22221 1346677778888888888888765444
No 59
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.4e-40 Score=309.47 Aligned_cols=192 Identities=23% Similarity=0.235 Sum_probs=167.6
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+.++|||+|+||+ ++||||+|++|.+|+++||+|++ |++|++++|+||||+||+.+|+++|++|+++++++.+.|+
T Consensus 20 ~~~~y~~gpt~y~--~~HiGH~r~~v~~Dvl~R~lr~~--G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~ 95 (213)
T cd00672 20 LVTMYVCGPTVYD--YAHIGHARTYVVFDVLRRYLEDL--GYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFF 95 (213)
T ss_pred CceEEEeCCccCC--CcccccchhHHHHHHHHHHHHhc--CCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4589999999995 89999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCccc-CCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 83 LMFKTYDIEY-THYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 83 ~~~~~l~i~~-d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
++++.|||++ |.|+|| |-..|-.
T Consensus 96 ~~~~~l~i~~~d~~~rt------------------------------Wh~ec~a-------------------------- 119 (213)
T cd00672 96 EDMKALNVLPPDVVPRV------------------------------WHIECSA-------------------------- 119 (213)
T ss_pred HHHHHcCCCCCCcceee------------------------------hhHHHHH--------------------------
Confidence 9999999998 999888 2111100
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccc
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
.....+
T Consensus 120 ------------------------------------------------------m~~~~l-------------------- 125 (213)
T cd00672 120 ------------------------------------------------------MAMKYL-------------------- 125 (213)
T ss_pred ------------------------------------------------------HHHHHc--------------------
Confidence 000011
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCCCcc
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDGVKM 320 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g~Km 320 (528)
| -|.|+|..|.|++++|+.++.++..+....++.+.|+| |++.++|+||
T Consensus 126 ------------------------g------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KM 175 (213)
T cd00672 126 ------------------------G------ETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKM 175 (213)
T ss_pred ------------------------C------CCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcch
Confidence 1 16789999999999999999999888644488899999 6778999999
Q ss_pred cccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcC
Q psy4049 321 SKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYS 359 (528)
Q Consensus 321 SkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~ 359 (528)
|||+||+|++.|+++++|+|++|||+++.. ++++++|+
T Consensus 176 SKs~Gn~v~~~dll~~~~~da~R~~~l~~~-~~~~l~f~ 213 (213)
T cd00672 176 SKSLGNFITVRDALKKYDPEVLRLALLSSH-YRSPLDFS 213 (213)
T ss_pred hhcCCCccCHHHHHHHcCHHHHHHHHHhCC-cCCCCCCC
Confidence 999999999999999999999999999755 68999986
No 60
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=2e-35 Score=315.42 Aligned_cols=372 Identities=16% Similarity=0.133 Sum_probs=272.7
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH---HcC--------C---
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI---KHK--------L--- 68 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~---~~g--------~--- 68 (528)
++++.|..+.|||+|++||||+|+++++|+++|++++. |++|.....++|.|.++-..+. +.+ .
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~--g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 188 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFL--GYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPD 188 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHC--CCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCCh
Confidence 35789999999999999999999999999999999999 9999999999998876544321 000 0
Q ss_pred ----------------------------------CH------HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHH
Q psy4049 69 ----------------------------------ET------IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVN 108 (528)
Q Consensus 69 ----------------------------------~~------~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~ 108 (528)
++ +..++...+.+++++++|||.||.|+..++..+...+.
T Consensus 189 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~ 268 (566)
T TIGR00456 189 HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVP 268 (566)
T ss_pred HHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHH
Confidence 00 34567788899999999999999987777777888899
Q ss_pred HHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeee
Q psy4049 109 TVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMF 188 (528)
Q Consensus 109 ~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~ 188 (528)
.++..|.++|++|++ +..+.+.. .+-.+ .. +++... ..|+++
T Consensus 269 ~v~~~L~~~g~~~~~-Ga~~~~~~--~~~d~----~~-----------~~vl~k----------sDGt~~---------- 310 (566)
T TIGR00456 269 KVLEDLKEKGLVVED-GALWLDLT--LFGDK----DK-----------DRVLQK----------SDGTYL---------- 310 (566)
T ss_pred HHHHHHHHCCCEEEc-CCEEEEcc--cccCC----CC-----------CeEEEE----------CCCCce----------
Confidence 999999999999976 55554321 00000 00 000000 111111
Q ss_pred eccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCC
Q psy4049 189 KLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYP 268 (528)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~ 268 (528)
++...++|...-
T Consensus 311 -----------------------------------------------------------------Y~t~DiA~~~~k--- 322 (566)
T TIGR00456 311 -----------------------------------------------------------------YLTRDIAYHLDK--- 322 (566)
T ss_pred -----------------------------------------------------------------echhhHHHHHHH---
Confidence 111111111000
Q ss_pred CCCC-CCccceEeeecccc-hhhhHHHHHHhhcCCCCCcEEEEeeeeeeCCCcccccCCCccCcc---------------
Q psy4049 269 DFHT-WPPHIQILGKDILK-FHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPM--------------- 331 (528)
Q Consensus 269 ~~~~-~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~--------------- 331 (528)
+++ +...|++.|.||.. |..++ +.+.++|++++.++.+|+|.+++|.|||||+||+|++.
T Consensus 323 -~~~~~d~iI~V~g~~q~~h~~~v~--~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~ 399 (566)
T TIGR00456 323 -LERGFDKMIYVWGSDHHLHIAQFF--AILEKLGFYKKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVIT 399 (566)
T ss_pred -HhcCCCEEEEEecCcHHHHHHHHH--HHHHHcCCCCCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHH
Confidence 011 23448889999986 44444 66778998778889989988889999999999999998
Q ss_pred --------hhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhh
Q psy4049 332 --------SKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEV 403 (528)
Q Consensus 332 --------~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~ 403 (528)
++++.+|.|++||++++..+ .++.+|+++.+.+. ++++.++++|+++|+++++.+............+.
T Consensus 400 ~~~~~~~~~~~~~vg~dAvRy~~L~~~~-~~d~~Fd~d~~~~~-~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~- 476 (566)
T TIGR00456 400 IKNDLEEEDVADAVGIGAVRYFDLSQNR-ETHYVFDWDAMLSF-EGNTAPYIQYAHARICSILRKADIDGEKLIADDFS- 476 (566)
T ss_pred hcCCccHHHHHHHhcccceeeHHhhcCC-CCCceecHHHHhcc-CCCCchhHHHHHHHHHHHHHhcccccccccccccC-
Confidence 67777899999999998774 89999999987775 77789999999999999876543211100000011
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc--HHHHHHHHHHHHHHHH
Q psy4049 404 MFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK--IEELNLVLGVTFEVLR 481 (528)
Q Consensus 404 ~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~--~~~~~~~~~~l~~~l~ 481 (528)
...+.+..++..+..+++.+.+++++++++.++.+++++++.+|+||+..+ .+..++. ...+..++..+..+|+
T Consensus 477 --~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~--Vl~~~~~~~~~~RL~L~~a~~~vl~ 552 (566)
T TIGR00456 477 --LLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACP--VLDAENENLAAARLALLKATRQTLK 552 (566)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCc--cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 124668889999999999999999999999999999999999999999874 4543322 4567778888888888
Q ss_pred HHHHcccccch
Q psy4049 482 ICGIGLQPIVP 492 (528)
Q Consensus 482 ~l~~ll~P~~P 492 (528)
..+.+|.--.|
T Consensus 553 ~gL~lLGI~~~ 563 (566)
T TIGR00456 553 NGLQLLGIEPP 563 (566)
T ss_pred HHHHhcCCCcc
Confidence 88888765444
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1.1e-35 Score=294.39 Aligned_cols=266 Identities=17% Similarity=0.206 Sum_probs=198.3
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCc------------------chHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEH------------------GLKIQNAAIK 65 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~------------------g~~i~~~a~~ 65 (528)
++++|++++ +|||.+||||+++++.+|+++||+|++ |++|.+++|+|+| |.|+...+++
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~--G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDL--GFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHc--CCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 467777777 699999999999999999999999999 9999999999999 7888888888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeec------cc-e------eeccccC
Q psy4049 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP------NK-Y------KGWYCVS 132 (528)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~------~~-~------~~~~~~~ 132 (528)
.|.++ ++++++.+.|++.++.|||++|.+.+|....+..+.+.++..|.+++.|.+ +. . -.++|++
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~ 174 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEK 174 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCC
Confidence 99888 999999999999999999999977777777777899999999999998843 21 1 1135667
Q ss_pred cCccccccccccCCCchhhhhhhhccCCCCC-CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccch
Q psy4049 133 EESFLLEHQIRPDEKNEEESFLLEHQIRPDE-KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPK 211 (528)
Q Consensus 133 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~ 211 (528)
|++ +. ..+... |. .+...+.| .||+..+.-. ...
T Consensus 175 cg~-~~-~~v~~~----------------d~~~~~v~y~c-~cG~~g~~~~--------------------------~~g 209 (353)
T cd00674 175 CGK-DT-TTVEAY----------------DAKAGTVTYKC-ECGHEETVDI--------------------------RTG 209 (353)
T ss_pred cCc-ce-eEEEEE----------------eCCCCeEEEEc-CCCCEEEEee--------------------------cCC
Confidence 663 22 222211 22 23344556 4777654211 000
Q ss_pred hhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhH
Q psy4049 212 KFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIY 291 (528)
Q Consensus 212 ~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~ 291 (528)
.. .|.|-+..|.. |....+|+.+.|+||...-|++
T Consensus 210 ~~----------------------KL~Wr~dW~~r-----------------------W~~l~Vd~E~~GkDh~~~ggs~ 244 (353)
T cd00674 210 RG----------------------KLTWRVDWPMR-----------------------WAILGVDFEPFGKDHASAGGSY 244 (353)
T ss_pred Cc----------------------ccCCCCCchhh-----------------------hhhcCCCEEeeCccccccccHH
Confidence 00 13444443310 1112568999999998754555
Q ss_pred HHH--HHh-hcCCCCCcEEEEeeeeeeCCC-cccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHH
Q psy4049 292 WPA--FLI-AAGLEPPKSFLVHSHWTVDGV-KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAK 364 (528)
Q Consensus 292 ~~a--~~~-~~~~~~~~~~~~hg~~~~~g~-KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~ 364 (528)
-.+ ++. .+|.++|. .++||+++++|+ |||||+||+|++.|+++.+++|++||++++.....++++|+.+...
T Consensus 245 ~~~~~i~~~ilg~~~P~-~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~~~ 320 (353)
T cd00674 245 DTGKEIAREIFGGEPPV-PVMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDILR 320 (353)
T ss_pred HHHHHHHHHHhCCCCCe-EEEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChhHHH
Confidence 443 334 67877664 478999988776 9999999999999999999999999999976635789999986443
No 62
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-34 Score=300.34 Aligned_cols=374 Identities=19% Similarity=0.177 Sum_probs=271.3
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH-------H----------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI-------K---------- 65 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~-------~---------- 65 (528)
.+++.|....|||+|++||||+|+++++|+++|.++.. ||+|.....++|.|.++-..+. +
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~--Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~ 193 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFL--GYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDG 193 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHc--CCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcch
Confidence 46899999999999999999999999999999999999 9999999999998876543211 0
Q ss_pred ----------------cCCC-H-------------------HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHH
Q psy4049 66 ----------------HKLE-T-------------------IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNT 109 (528)
Q Consensus 66 ----------------~g~~-~-------------------~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~ 109 (528)
.+.+ - +.+++.....+++++.+|||.+|.|...++..+...+..
T Consensus 194 ~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 194 YLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHH
Confidence 0100 0 126788889999999999999999988888888889999
Q ss_pred HHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeee
Q psy4049 110 VWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFK 189 (528)
Q Consensus 110 ~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~ 189 (528)
++..|.++|++|+.++....+-. .+. .. |.
T Consensus 274 vv~~L~~~~~~~e~~GA~~vdl~--~~~-----~~--------------------gd----------------------- 303 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVVDLL--KFK-----KF--------------------GD----------------------- 303 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEEehh--hhh-----hc--------------------CC-----------------------
Confidence 99999999999985544321111 000 00 00
Q ss_pred ccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCC
Q psy4049 190 LSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPD 269 (528)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~ 269 (528)
.++..+.|+ +.-+.+|...++|...-
T Consensus 304 -----------------------------------~~~~vl~KS---------------DGt~lY~t~DIAy~~~K---- 329 (577)
T COG0018 304 -----------------------------------DKDRVLQKS---------------DGTYLYFTRDIAYHLYK---- 329 (577)
T ss_pred -----------------------------------CCCeEEEEc---------------CCCeeeehhHHHHHHHH----
Confidence 111112221 00011122222221110
Q ss_pred CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEee---eeee-CCCcccccCCCccCcchhhhhcC------
Q psy4049 270 FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHS---HWTV-DGVKMSKSVGNVVDPMSKLSDFT------ 338 (528)
Q Consensus 270 ~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg---~~~~-~g~KmSkS~gn~i~~~~~~~~~~------ 338 (528)
++. +...|++.|.||...-.-+ -+.+..+|+.+...+..|. ++.. +|.||||+.|++|+++|++++.+
T Consensus 330 ~~~~~d~~IyV~gadq~~~~~ql-~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~ 408 (577)
T COG0018 330 FERGFDKLIYVLGADQHGHFKQL-KAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEE 408 (577)
T ss_pred HhcCCCEEEEEeCCcchhHHHHH-HHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhH
Confidence 111 3445899999998621111 1334567777665666673 3322 57799999999999999999887
Q ss_pred ----------------chHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccc---
Q psy4049 339 ----------------SCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRE--- 399 (528)
Q Consensus 339 ----------------~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~--- 399 (528)
.+++||++++..+ .+++.|+++.+.+... |...++++++.|+.+++.+...........
T Consensus 409 ~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfeg-Nt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~ 486 (577)
T COG0018 409 MEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEG-NTAPYVQYAHARICSILRKAGEDELDLSTEADA 486 (577)
T ss_pred hhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccC-CCchhHHHHHHHHHHHHHhccccccccccccch
Confidence 9999999998775 8999999999988755 789999999999999887654321111110
Q ss_pred hhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc--HHHHHHHHHHHH
Q psy4049 400 CYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK--IEELNLVLGVTF 477 (528)
Q Consensus 400 ~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~--~~~~~~~~~~l~ 477 (528)
.+ ....+..++.+|.+|+..++.+.++++||.++.++++++..+|+||+.++ .+..++. +.++..++..+.
T Consensus 487 ~l-----~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~--Vl~~~~~~~~~aRL~L~~a~~ 559 (577)
T COG0018 487 LL-----TELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP--VLGAENEELRAARLALVKATR 559 (577)
T ss_pred hc-----cChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCC--cCCCCcHHHHHHHHHHHHHHH
Confidence 11 13447899999999999999999999999999999999999999999977 3554432 567788888888
Q ss_pred HHHHHHHHcccccch
Q psy4049 478 EVLRICGIGLQPIVP 492 (528)
Q Consensus 478 ~~l~~l~~ll~P~~P 492 (528)
.+|++.+.||.--+|
T Consensus 560 ~vL~ngL~LLGI~~~ 574 (577)
T COG0018 560 QVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHhcCCCCc
Confidence 999998888765544
No 63
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-33 Score=296.42 Aligned_cols=366 Identities=12% Similarity=0.065 Sum_probs=263.2
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHH---HHcCCC----------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAA---IKHKLE---------- 69 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a---~~~g~~---------- 69 (528)
++++.|....|||+|++||||+|+++++|+++|.++.. ||+|.....++|.|.++-..+ .+.|..
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~--G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 189 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKC--GYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRE 189 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHC--CCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHH
Confidence 46799999999999999999999999999999999999 999999999999988655432 111110
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHH
Q psy4049 70 ---------------------------------------TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTV 110 (528)
Q Consensus 70 ---------------------------------------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~ 110 (528)
++.+++...+.|+++|++|||.||.+ ..+..|.+.+..+
T Consensus 190 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~--~~es~~~~~~~~v 267 (562)
T PRK12451 190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNF--QGEAFYNDLMEDF 267 (562)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceee--cchHhhhhhHHHH
Confidence 13346777789999999999999966 3455688888999
Q ss_pred HHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeec
Q psy4049 111 WTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKL 190 (528)
Q Consensus 111 ~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l 190 (528)
+.+|.++|++|+.++..+.+... +- + . +++.... .|+++-
T Consensus 268 ~~~L~~~g~~~e~dGa~~~~~~~--~g-~-----~-----------~~vl~ks----------DGt~~Y----------- 307 (562)
T PRK12451 268 IGILEEHDLLEESEGALVVNLEE--EG-M-----P-----------PCLIRKS----------DGATIY----------- 307 (562)
T ss_pred HHHHHHCCCEEecCCeEEEEecc--cC-C-----C-----------ceEEEeC----------CCcccc-----------
Confidence 99999999999887766543210 00 0 0 0000011 111110
Q ss_pred cccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCC
Q psy4049 191 SNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDF 270 (528)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~ 270 (528)
+...++|...- +
T Consensus 308 ----------------------------------------------------------------~t~DiA~~~~k----~ 319 (562)
T PRK12451 308 ----------------------------------------------------------------ATRDLTAALYR----Q 319 (562)
T ss_pred ----------------------------------------------------------------chhHHHHHHHH----h
Confidence 11111110000 0
Q ss_pred CC--CCccceEeeecccc-hhhhHHHHHHhhcCCCCCc--EEEEeeeeeeCCCcccccCCCccCcchhhhh---------
Q psy4049 271 HT--WPPHIQILGKDILK-FHGIYWPAFLIAAGLEPPK--SFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD--------- 336 (528)
Q Consensus 271 ~~--~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~~~--~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~--------- 336 (528)
++ +...|++.|.||.. |..++ +.+.++|+.+.. .++.+|+|.++|+||||++|++|+++||+++
T Consensus 320 ~~~~~d~~IyV~g~dq~~h~~~l~--~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~ 397 (562)
T PRK12451 320 NTFGFDKALYVVGPEQSLHFNQFF--TVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNI 397 (562)
T ss_pred hccCCCEEEEEeCCcHHHHHHHHH--HHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHH
Confidence 10 12348899999986 33444 556678875433 3355588888999999999999999999996
Q ss_pred ----------------cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccch
Q psy4049 337 ----------------FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNREC 400 (528)
Q Consensus 337 ----------------~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~ 400 (528)
+|.+++||++++..+ .++++|+++.+.+.. ++...++++++.|+++++.+.+.... ...
T Consensus 398 ~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~-g~t~pYiQYa~AR~~SIlrka~~~~~---~~~ 472 (562)
T PRK12451 398 EEKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLKFE-GETGPYVQYTHARACSILRKESVEFE---TCT 472 (562)
T ss_pred HhhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhCcC-CCccHHHHHHHHHHHHHHHhcCCCcc---ccc
Confidence 779999999998775 899999999976542 22344999999999998876532111 001
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHH
Q psy4049 401 YEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVL 480 (528)
Q Consensus 401 ~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l 480 (528)
+. -..+.+..++..+..++..+.+++++++++.++.++++++..+|+||+..+. +..++.+..+..++..+..+|
T Consensus 473 ~~---l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~V--l~~~~~~~~RL~L~~a~~~vL 547 (562)
T PRK12451 473 FA---LKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRI--LEESAEKDSRLALVYAVTVVL 547 (562)
T ss_pred cC---CCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHH
Confidence 11 0146788999999999999999999999999999999999999999987663 322212456777888888888
Q ss_pred HHHHHcccccch
Q psy4049 481 RICGIGLQPIVP 492 (528)
Q Consensus 481 ~~l~~ll~P~~P 492 (528)
+..+.||.-=.|
T Consensus 548 ~~gL~LLGI~~~ 559 (562)
T PRK12451 548 KEGLRLLGVEAP 559 (562)
T ss_pred HHHHHhcCCCcc
Confidence 888888764444
No 64
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=1.1e-31 Score=285.53 Aligned_cols=366 Identities=13% Similarity=0.072 Sum_probs=259.8
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH----cCC----------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK----HKL---------- 68 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~----~g~---------- 68 (528)
++++.|....|||+|++||||+|+++++|+++|.++.. ||+|.....++|.|.++-..+.. .+.
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~--G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFS--GVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHc--CCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 36799999999999999999999999999999999999 99999999999999875543211 110
Q ss_pred ---------------CH------------------------HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHH
Q psy4049 69 ---------------ET------------------------IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNT 109 (528)
Q Consensus 69 ---------------~~------------------------~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~ 109 (528)
++ +.+++.....|++++++|||.+|.. .+..|...+..
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 00 2455667788999999999999973 45557788899
Q ss_pred HHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeee
Q psy4049 110 VWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFK 189 (528)
Q Consensus 110 ~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~ 189 (528)
++..|.++|++|+.++..+.+-. +. +. ++.... ..|+.+-
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l~------~~---~~-----------~~vl~k----------sDGt~tY---------- 310 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFVE------GF---DI-----------PLIVVK----------SDGGFNY---------- 310 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeecc------CC---CC-----------ceEEEE----------CCCchhh----------
Confidence 99999999999988766543210 00 00 000000 1111110
Q ss_pred ccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCC
Q psy4049 190 LSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPD 269 (528)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~ 269 (528)
+...++|...-
T Consensus 311 -----------------------------------------------------------------~t~DIA~~~~k---- 321 (576)
T PLN02286 311 -----------------------------------------------------------------ASTDLAALWYR---- 321 (576)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHH----
Confidence 00011100000
Q ss_pred CCC--CCccceEeeecccc-hhhhHHHHHHhhcCCCCC-----cEEEEeeeee-eCCCcccccCCCccCcchhhh-----
Q psy4049 270 FHT--WPPHIQILGKDILK-FHGIYWPAFLIAAGLEPP-----KSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLS----- 335 (528)
Q Consensus 270 ~~~--~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~~-----~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~----- 335 (528)
+++ +...|++.|.||.. |..++ +.+.++|+.+. -.++.+|+|. .+|+||||+.|++|+++|+++
T Consensus 322 ~~~~~~d~~IyVvg~~q~~hf~~v~--~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~ 399 (576)
T PLN02286 322 LNEEKAEWIIYVTDVGQQQHFDMVF--KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSR 399 (576)
T ss_pred HhccCCCEEEEEEeCcHHHHHHHHH--HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHH
Confidence 001 12348889999986 33333 55677886422 2345568885 688899999999999999998
Q ss_pred ------------------------hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q psy4049 336 ------------------------DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDN 391 (528)
Q Consensus 336 ------------------------~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~ 391 (528)
.+|.+++||++++..+ .++++|+++.+.+. +++...++++++.|+++++.+...
T Consensus 400 a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~-~g~t~pYlQYahAR~~SIlrKa~~ 477 (576)
T PLN02286 400 SKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLDL-KGNTAVYLLYAHARICSIIRKSGK 477 (576)
T ss_pred HHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHhh-cCCChHHHHHHHHHHHHHHHhccC
Confidence 3568999999998775 89999999997765 333444999999999999876542
Q ss_pred CCCCccc-chhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHH
Q psy4049 392 VNPLVNR-ECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELN 470 (528)
Q Consensus 392 ~~~~~~~-~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~ 470 (528)
....... ..+. -..+.++.|+..|..|+..+..+.++++|+.++.++++++..+|+||+..+ .+..++ ...+.
T Consensus 478 ~~~~~~~~~~~~---l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~--Vl~~~~-~~aRL 551 (576)
T PLN02286 478 DIDELKKTGKIV---LDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK--VNGSEE-ETSRL 551 (576)
T ss_pred cccccccccccc---CCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc--cCCCCc-hhHHH
Confidence 2111100 0010 125678899999999999999999999999999999999999999998764 343222 25677
Q ss_pred HHHHHHHHHHHHHHHcccccch
Q psy4049 471 LVLGVTFEVLRICGIGLQPIVP 492 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~P~~P 492 (528)
.++..+..+|++.+.||.--.|
T Consensus 552 ~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 552 LLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHHHHHHHHHHHhcCCCcc
Confidence 7888888899888888765444
No 65
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=1.8e-32 Score=287.15 Aligned_cols=262 Identities=19% Similarity=0.178 Sum_probs=182.8
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcch--------HH-HHHHHHcCCC-------
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGL--------KI-QNAAIKHKLE------- 69 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~--------~i-~~~a~~~g~~------- 69 (528)
++|+++. +|||.+||||+++++.+|+++|++|++ |++|.+++|+||||- |. +..++..|.+
T Consensus 25 ~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~--G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 25 VVVETGI-GPSGLPHIGNFREVARTDMVRRALRDL--GIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred EEEEeCC-CCCCCcccccccchhhHHHHHHHHHHc--CCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 5566666 799999999999999999999999999 999999999999972 22 2344444544
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeec------cc-e------eeccccCc
Q psy4049 70 ---TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP------NK-Y------KGWYCVSE 133 (528)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~------~~-~------~~~~~~~~ 133 (528)
++++++++.+.|++.++.+||++|.+.+|.......+.+.+...|.+++.|.+ +. . -.++|++|
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~c 181 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKC 181 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCC
Confidence 79999999999999999999999977666554455666667777777776642 11 0 12457777
Q ss_pred CccccccccccCCCchhhhhhhhccCCCCC-CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchh
Q psy4049 134 ESFLLEHQIRPDEKNEEESFLLEHQIRPDE-KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKK 212 (528)
Q Consensus 134 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~ 212 (528)
++.....-++. |. .|...+.| .||+..+.-.. -..
T Consensus 182 g~~~~~~~~~~-----------------d~~~~~v~y~~-~cG~~~~~~~~--------------------------~g~ 217 (510)
T PRK00750 182 GKVLTTPVISY-----------------DAEAGTVTYDC-ECGHEGEVPVT--------------------------GGH 217 (510)
T ss_pred CccceEEEEEE-----------------eCCCCEEEEEc-CCCCEEEEecC--------------------------CCC
Confidence 76543222111 11 12233445 47776542110 000
Q ss_pred hHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHH
Q psy4049 213 FYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYW 292 (528)
Q Consensus 213 ~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~ 292 (528)
. .|.|-+..|. - |....+|+.+.|+||...+....
T Consensus 218 ~----------------------KL~Wr~dW~~------------r-----------W~~l~Vd~e~~GkDh~~~s~~~~ 252 (510)
T PRK00750 218 G----------------------KLQWKVDWPM------------R-----------WAALGVDFEPFGKDHASASYDTS 252 (510)
T ss_pred c----------------------ccCCCCCcHH------------H-----------HHHcCCCEEeeCcccCcchHHHH
Confidence 0 0334443221 0 11124689999999987322223
Q ss_pred HHHHh-hcCCCCCcEEEEeeeeeeC-CCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCH
Q psy4049 293 PAFLI-AAGLEPPKSFLVHSHWTVD-GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSE 360 (528)
Q Consensus 293 ~a~~~-~~~~~~~~~~~~hg~~~~~-g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~ 360 (528)
..+.. .+|.++|.. ++||+++.+ |+|||||+||+|++.|+++.+++|++|||++...++.++++|+.
T Consensus 253 ~~i~~~ilg~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 253 KKIAREILGGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HHHHHHHcCCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH
Confidence 33444 678877654 678999877 99999999999999999999999999988886666788999998
No 66
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.96 E-value=1.5e-29 Score=262.82 Aligned_cols=266 Identities=15% Similarity=0.144 Sum_probs=184.8
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCc------------------chHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEH------------------GLKIQNAAIK 65 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~------------------g~~i~~~a~~ 65 (528)
++++|+++.+ |||.+||||+++.+.+|+++|++|++ |++|.+++++||+ |.|+...++.
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~--g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp 94 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDS--GSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDP 94 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHc--CCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCC
Confidence 4677788886 99999999999999999999999999 9999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCcccCCCCCC---CCHHHHHHHHHHHHHHhhCCCee---ccc------e-eeccccC
Q psy4049 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRT---TSEHHFRTVNTVWTKLKQRDSIY---PNK------Y-KGWYCVS 132 (528)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t---~~~~~~~~~~~~~~~L~~~g~iy---~~~------~-~~~~~~~ 132 (528)
.|.+ .++++++...+++.|+.|||+++....| .+..|.+.+..++++-.+-.-|. .+. . -.++|++
T Consensus 95 ~g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~ 173 (515)
T TIGR00467 95 EGCK-TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCEN 173 (515)
T ss_pred CCCc-HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCC
Confidence 9987 8999999999999999999998865443 13345555555544433322221 111 1 1246888
Q ss_pred cCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchh
Q psy4049 133 EESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKK 212 (528)
Q Consensus 133 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~ 212 (528)
|++..+ ..+ .. +.+....+.| .||+..+.-.. ...
T Consensus 174 cGrv~~-~~~-~~----------------~~~~~v~Y~c-~cG~~g~~~~~--------------------------~g~ 208 (515)
T TIGR00467 174 CGRDTT-TVN-NY----------------DNEYSIEYSC-ECGNQESVDIY--------------------------TGA 208 (515)
T ss_pred cCccCc-eEE-Ee----------------cCCceEEEEc-CCCCEEEEeec--------------------------CCC
Confidence 888754 222 21 2222334456 47876653110 000
Q ss_pred hHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHH
Q psy4049 213 FYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYW 292 (528)
Q Consensus 213 ~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~ 292 (528)
. .+.|-+..|.. |....+|+...|+||...-|.+.
T Consensus 209 ~----------------------KL~WkvdW~~R-----------------------W~~lgV~~Ep~GkDH~~~ggsy~ 243 (515)
T TIGR00467 209 I----------------------KLPWRVDWPAR-----------------------WKIEKVTFEPAGKDHAAAGGSYD 243 (515)
T ss_pred c----------------------ccCCCCCcHhh-----------------------HhhhCcccccCCCCccCccCCch
Confidence 0 03344432210 11125689999999987544444
Q ss_pred HHHH---hhcCCCCCcEEEEeeeee--eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHH
Q psy4049 293 PAFL---IAAGLEPPKSFLVHSHWT--VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNI 366 (528)
Q Consensus 293 ~a~~---~~~~~~~~~~~~~hg~~~--~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~ 366 (528)
...- .++|..+|.. +.++++. .+|+|||||+||+|+++|+++.+++|++||++++.. +.++++|+.+.+ ++
T Consensus 244 ~~~~ia~~~l~~~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~-~~~~ldFd~~~l-~~ 319 (515)
T TIGR00467 244 TGVNIAKEIFQYSPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTK-PEFHISFDLDVI-KL 319 (515)
T ss_pred hHHHHHHHHhCCCCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccC-CCCCCcCCHHHH-HH
Confidence 4322 3566665543 3355553 456799999999999999999999999999988654 699999999977 54
No 67
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.95 E-value=8.5e-27 Score=218.91 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=115.3
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++.|..++|||||++||||+|+++++|+++|++|+. |++|.+++++||+|+++...|.+.+ .++++++.+.+.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~--G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~ 77 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFL--GYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLET 77 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHC--CCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999 9999999999999999999997664 4899999999999999
Q ss_pred HhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCc
Q psy4049 85 FKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSE 133 (528)
Q Consensus 85 ~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~ 133 (528)
+++|||.+|.|.++++ +...+..+++.|.++|++|+.++.+++|..+
T Consensus 78 ~~~L~i~~d~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 78 YGRLDVRFDVWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHhCCcCceecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 9999999999988877 5899999999999999999999888887654
No 68
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.91 E-value=6.6e-25 Score=214.58 Aligned_cols=270 Identities=19% Similarity=0.180 Sum_probs=143.2
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchH--HHH------HHHHcCCC-------
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLK--IQN------AAIKHKLE------- 69 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~--i~~------~a~~~g~~------- 69 (528)
..+|+.+.-.|||.+||||+|+.+.+|+++|.+|.+ |.+|.++..+||.+-- +-. .++-.|.+
T Consensus 23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~--g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDR--GKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTT--T-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHc--CCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 456666666999999999999999999999999999 9999999999998531 110 01111221
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccCCCCCCC---CHHHHHHHHHHHHHHhhCCCee--------ccc--eeeccccCc
Q psy4049 70 ---TIDFCNKISDQYKLMFKTYDIEYTHYVRTT---SEHHFRTVNTVWTKLKQRDSIY--------PNK--YKGWYCVSE 133 (528)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~---~~~~~~~~~~~~~~L~~~g~iy--------~~~--~~~~~~~~~ 133 (528)
...+++++.+.|.+.|+.+||+++....|. +..|.+.+..++++-.+-.-|. ..+ --.++|++|
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~c 180 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPICEKC 180 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTT
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeecccc
Confidence 256999999999999999999987554442 3345555544443322222221 111 123578888
Q ss_pred CccccccccccCCCchhhhhhhhccCCCC-CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchh
Q psy4049 134 ESFLLEHQIRPDEKNEEESFLLEHQIRPD-EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKK 212 (528)
Q Consensus 134 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~ 212 (528)
++.....-+.. | ..+...+.|..||+..+.-....- -+
T Consensus 181 Gri~tt~v~~~-----------------d~~~~~v~Y~c~~cG~~g~~~i~~g~-gK----------------------- 219 (360)
T PF01921_consen 181 GRIDTTEVTEY-----------------DPEGGTVTYRCEECGHEGEVDITGGN-GK----------------------- 219 (360)
T ss_dssp EE--EEEEEEE-------------------SSSEEEEE--TTS---EEETTTT--EE-----------------------
T ss_pred CCcccceeeEe-----------------ecCCCEEEEEecCCCCEEEEecCCCc-cc-----------------------
Confidence 88544322222 2 234455678889987763221100 01
Q ss_pred hHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHH
Q psy4049 213 FYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYW 292 (528)
Q Consensus 213 ~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~ 292 (528)
|.|-+..|. -|. + ..+|+...||||...-|.+-
T Consensus 220 ------------------------L~WkvDW~m------------RW~---~--------lgVdfEp~GKDH~~~GGS~d 252 (360)
T PF01921_consen 220 ------------------------LQWKVDWPM------------RWA---A--------LGVDFEPFGKDHASPGGSYD 252 (360)
T ss_dssp ------------------------E-HHHHHHH------------HHH---H--------TT-SEEEEEHHHHCTTSHHH
T ss_pred ------------------------ccCCCcChh------------hhh---h--------cCceeccCCCccCCCCCChh
Confidence 223332110 000 0 24679999999998878887
Q ss_pred HHHHhh---cCCCCCcEEEEeeeeeeCCC-cccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHH-HHHHH
Q psy4049 293 PAFLIA---AGLEPPKSFLVHSHWTVDGV-KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSET-KAKNI 366 (528)
Q Consensus 293 ~a~~~~---~~~~~~~~~~~hg~~~~~g~-KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~-~~~~~ 366 (528)
++.-++ +|.+||. .+..+|++.+|+ |||||+||+++++|+++-+.|++|||++++..| .+..+|+.+ .+-+.
T Consensus 253 ~~~~I~~~i~g~~pP~-~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P-~~~~~~~~~~~i~~~ 329 (360)
T PF01921_consen 253 TSKRIAREILGYEPPV-PFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKP-NKAKDFSFDLVIPRL 329 (360)
T ss_dssp HHHHHHHHCC-----E-EEEE--EEES--------------HHHHHTTS-HHHHHHHHHCS-T-TS-EEE--STTHHHH
T ss_pred hHHHHHHHHhCCCCCC-CCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCC-CcceEeccCcchHHH
Confidence 776555 6877765 455788887776 999999999999999999999999999997665 777888877 55543
No 69
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.8e-23 Score=208.01 Aligned_cols=268 Identities=19% Similarity=0.188 Sum_probs=175.0
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcch--------HH-HHHHHHcCC--------
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGL--------KI-QNAAIKHKL-------- 68 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~--------~i-~~~a~~~g~-------- 68 (528)
.||+.+.-.|+|.+|||++|..+.+|+++|.+|.+ |++|.+|+-+||++- |- +...+-.|.
T Consensus 20 ~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~--g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 20 EYVVATGISPSGLIHIGNFREVLTADAVRRALRDR--GDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred cEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHc--CCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 45555555999999999999999999999999999 999999999999852 11 112223333
Q ss_pred --CHHHHHHHHHHHHHHHHhhcCcccCCCCCCC---CHHHHHHHHHHHHHHhhCCCe---ec-----cce--eeccccCc
Q psy4049 69 --ETIDFCNKISDQYKLMFKTYDIEYTHYVRTT---SEHHFRTVNTVWTKLKQRDSI---YP-----NKY--KGWYCVSE 133 (528)
Q Consensus 69 --~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~---~~~~~~~~~~~~~~L~~~g~i---y~-----~~~--~~~~~~~~ 133 (528)
....+++++...|.+.|+.+||.++....|. +..|.+.+..++.+-.+-.-| |+ .++ -.++|++|
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~~~~e~~~P~~piC~kc 177 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGRELEEDWSPFMPICEKC 177 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCCcccCCceecccccccc
Confidence 2367999999999999999999887554331 223444444443332222111 11 111 11457777
Q ss_pred CccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhh
Q psy4049 134 ESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKF 213 (528)
Q Consensus 134 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~ 213 (528)
++.++..-++- |..|...+.| .||+..+.- +.-...
T Consensus 178 Gri~~t~v~~~-----------------d~~~~v~Y~C-e~Gh~g~v~--------------------------ir~g~~ 213 (521)
T COG1384 178 GRILTTPVIEW-----------------DGEGTVEYRC-ECGHEGEVD--------------------------IRGGEG 213 (521)
T ss_pred CCcceeEEEEe-----------------cCCceEEEEe-cCCccceee--------------------------ccccCc
Confidence 77544332222 2224445556 456654311 100000
Q ss_pred HHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHH
Q psy4049 214 YNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWP 293 (528)
Q Consensus 214 ~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~ 293 (528)
.+.|-+..|.. |....+|+...||||...-+.+-.
T Consensus 214 ----------------------KL~WRvdWp~R-----------------------W~~lgVd~EPfGKDH~a~ggSydt 248 (521)
T COG1384 214 ----------------------KLPWRVDWPMR-----------------------WAALGVDFEPFGKDHAAAGGSYDT 248 (521)
T ss_pred ----------------------ccccCcCccch-----------------------hhccCcccccCCcccccccCchHH
Confidence 13344433310 111246899999999998888877
Q ss_pred HHHhhc---CCCCCcEEEEeeeeeeCC-CcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHH-HHHH
Q psy4049 294 AFLIAA---GLEPPKSFLVHSHWTVDG-VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETK-AKNI 366 (528)
Q Consensus 294 a~~~~~---~~~~~~~~~~hg~~~~~g-~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~-~~~~ 366 (528)
+..++- |.+||.. ++..+++++| +|||||+||+|+++|+++-+.|++|||+++++.| .+.++|+.+. +.+.
T Consensus 249 g~~I~~ei~g~~pP~~-~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP-~r~~~~d~~~~il~l 324 (521)
T COG1384 249 GKRIAREIFGYEPPVP-FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKP-NRHIDFDFDLGILKL 324 (521)
T ss_pred HHHHHHHhcCCCCCCC-CceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCC-CcceecCCCCChhHH
Confidence 766654 8777765 4478887776 8999999999999999999999999999997765 6666666665 4443
No 70
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.86 E-value=1.2e-21 Score=197.79 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH--------cC-CC---
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK--------HK-LE--- 69 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~--------~g-~~--- 69 (528)
.++++.|-.+.|||+|++||||+|+++++|+++|.++.. ||+|.....++|.|.++...+.. .. ..
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~--G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAA--GYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHT--TEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHc--CCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 357899999999999999999999999999999999999 99999999999999876543210 00 00
Q ss_pred -------------------------------------------HHHHHHH-HHHHHHHHHhhcCcccCCCCCCCCHHHHH
Q psy4049 70 -------------------------------------------TIDFCNK-ISDQYKLMFKTYDIEYTHYVRTTSEHHFR 105 (528)
Q Consensus 70 -------------------------------------------~~~~~~~-~~~~~~~~~~~l~i~~d~~~~t~~~~~~~ 105 (528)
..++... +.+.++++++++++.+|.++..++..+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 0223344 77889999999999999887667777888
Q ss_pred HHHHHHHHHhhCCCeeccceeecc
Q psy4049 106 TVNTVWTKLKQRDSIYPNKYKGWY 129 (528)
Q Consensus 106 ~~~~~~~~L~~~g~iy~~~~~~~~ 129 (528)
.+..++..|.++|++++.++..++
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i 199 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWI 199 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEE
T ss_pred HHHHHHHHHHhCCcEEecCCcEEE
Confidence 999999999999999987766554
No 71
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.82 E-value=2.4e-19 Score=158.01 Aligned_cols=77 Identities=21% Similarity=0.119 Sum_probs=74.8
Q ss_pred EECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 8 v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
|+.+.|||||++||||+|+++++|+++|++|++ |++|.++.|+||+|.++...+.+.+.+++++++++.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~--G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKL--GYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHc--CCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999 99999999999999999999999999999999999999999999
No 72
>KOG4426|consensus
Probab=99.77 E-value=1.1e-16 Score=155.17 Aligned_cols=334 Identities=15% Similarity=0.134 Sum_probs=222.7
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchH----HHHHHHH------------
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLK----IQNAAIK------------ 65 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~----i~~~a~~------------ 65 (528)
+.++..|..+.|+....+|+||+|+.+++|.++|.+... |++|+.+..+-|.|+. |+.-.++
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~--~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~Ig 263 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFS--GVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIG 263 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhc--CcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCch
Confidence 357889999999999999999999999999999999999 9999999999888764 2211111
Q ss_pred ------------------------------cCCCH------HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHH
Q psy4049 66 ------------------------------HKLET------IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNT 109 (528)
Q Consensus 66 ------------------------------~g~~~------~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~ 109 (528)
+|.+| ..+|+-..+++...+++|+|+... ..++.|+..+.+
T Consensus 264 DLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e---~GESFYq~~m~~ 340 (656)
T KOG4426|consen 264 DLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE---RGESFYQDRMAE 340 (656)
T ss_pred hHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh---cchhhhhhHHHH
Confidence 11111 347899999999999999998742 256679999999
Q ss_pred HHHHHhhCCCeeccceee-ccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceee-
Q psy4049 110 VWTKLKQRDSIYPNKYKG-WYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYM- 187 (528)
Q Consensus 110 ~~~~L~~~g~iy~~~~~~-~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~- 187 (528)
+++.|..+|++.+.++.. .|-+.|+ -|+....++.=|
T Consensus 341 vveel~~kglvee~~Gr~i~f~~g~~-----------------------------------------IPLtvVKSDGGft 379 (656)
T KOG4426|consen 341 VVEELKSKGLVEEDDGRRIMFPEGCD-----------------------------------------IPLTVVKSDGGFT 379 (656)
T ss_pred HHHHHhcCCceeecCCceEeccCCCC-----------------------------------------cceEEEecCCCcc
Confidence 999999999998877543 3333332 222222211111
Q ss_pred eeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcC
Q psy4049 188 FKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGY 267 (528)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~ 267 (528)
++.+ -...+...|++..-||-|-
T Consensus 380 Ydts---------------------DlaAl~yRl~EEkadwiIY------------------------------------ 402 (656)
T KOG4426|consen 380 YDTS---------------------DLAALKYRLNEEKADWIIY------------------------------------ 402 (656)
T ss_pred cccc---------------------hHHHHHHHHHHhhcCeEEE------------------------------------
Confidence 1111 1112223333324444331
Q ss_pred CCCCCCCccceEeeecccchhhhHHHHHHhhcCC--CCCcEEEEe---eeee-eCCCcccccCCCccCcchhhh------
Q psy4049 268 PDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGL--EPPKSFLVH---SHWT-VDGVKMSKSVGNVVDPMSKLS------ 335 (528)
Q Consensus 268 ~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~--~~~~~~~~h---g~~~-~~g~KmSkS~gn~i~~~~~~~------ 335 (528)
+.-.|.-+. |..+|-.+. ..|+ +...++ -| |.|+ -+|+|+-++.|.++.+.|+++
T Consensus 403 ---------VvD~GQs~H-f~t~fkAar--~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs 469 (656)
T KOG4426|consen 403 ---------VVDSGQSQH-FNTIFKAAR--KAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRS 469 (656)
T ss_pred ---------EeeCchhHH-HHHHHHHHH--HcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHH
Confidence 111343333 334443332 2333 222222 34 4443 467899999999999988886
Q ss_pred -----------------------hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy4049 336 -----------------------DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNV 392 (528)
Q Consensus 336 -----------------------~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~ 392 (528)
.++=..+.|.-++++. .++..||.+.+.+- +.+..-++-+++.|++++..+.+..
T Consensus 470 ~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR-~~dY~FSFDkML~D-rGnTAvYLLYa~tRIcSI~rksg~d 547 (656)
T KOG4426|consen 470 KEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNR-ITDYIFSFDKMLED-RGNTAVYLLYAYTRICSIARKSGKD 547 (656)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhcccc-ccceeeeHHHHhhc-cCcceehhHHHHHHHHHHHHHcCCc
Confidence 2333448888887664 67889999988753 3456668889999999987544322
Q ss_pred CCCc----c-cchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccC
Q psy4049 393 NPLV----N-RECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTK 456 (528)
Q Consensus 393 ~~~~----~-~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k 456 (528)
.... . .+++. -..+.++.+-..|.++.+.++++.+++-++..+.++++++..+..||+.+.
T Consensus 548 ~~~l~~~lkkT~ki~---LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cy 613 (656)
T KOG4426|consen 548 NVDLIKELKKTGKIA---LDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCY 613 (656)
T ss_pred hhhHHHHHHhcCccc---cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccE
Confidence 1000 0 00111 123556778889999999999999999999999999999999999999874
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.72 E-value=5.3e-17 Score=169.47 Aligned_cols=274 Identities=16% Similarity=0.125 Sum_probs=160.4
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-+++--+|+|||+|||||+|++++.+.++| +.. | .++.-+||.+.++.. -...+.+.|.+++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~--G---~~iLRidDTDpk~~R-----------~~~e~~~~I~edL 162 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAK--MYG--G---KFILRFEDTDPRTKR-----------PDPEAYDMILEDL 162 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcC--C---EEEEeEccCCCCccc-----------chHHHHHHHHHHH
Confidence 377888999999999999999999999999 333 4 444555555443211 1334448899999
Q ss_pred hhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCch---hhhhh--hhccCC
Q psy4049 86 KTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE---EESFL--LEHQIR 160 (528)
Q Consensus 86 ~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~---~~~~~--~~~~~~ 160 (528)
++||+.+|..+..++ +.+...+...+|.++|.+|... |+..+ +-..+.....|++. .+..+ -+ ..
T Consensus 163 ~wLGl~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C~-----cs~ee-~~~~r~~g~~~~~R~~~~ee~l~~~e-~m- 232 (567)
T PRK04156 163 KWLGVKWDEVVIQSD--RLEIYYEYARKLIEMGGAYVCT-----CDPEE-FKELRDAGKPCPHRDKSPEENLELWE-KM- 232 (567)
T ss_pred HHcCCCCCCccCccc--CHHHHHHHHHHHHHcCCCccCC-----CCHHH-HHHHHhcCCCCCCcCCCHHHHHHHHH-Hh-
Confidence 999999997766666 8899999999999999999543 33321 10000000001000 00000 00 00
Q ss_pred CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccc
Q psy4049 161 PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWG 240 (528)
Q Consensus 161 ~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG 240 (528)
. .|. ...| +..+|. +++ . -.| +..+.||.+-|.. +
T Consensus 233 ~--~G~-----~~~g-~~vlR~------k~d------------~---~~~-----------n~~~rD~v~~R~~-----~ 267 (567)
T PRK04156 233 L--DGE-----YKEG-EAVVRV------KTD------------L---EHP-----------NPSVRDWVAFRIV-----K 267 (567)
T ss_pred h--cCc-----cccC-CeEEEE------ECc------------c---cCC-----------CCCccccEEEEEc-----C
Confidence 0 000 0000 111111 000 0 001 1126788887752 1
Q ss_pred cccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccc---h---hhhHHHHHHhhcCCCCCcEEEEe-eee
Q psy4049 241 IPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILK---F---HGIYWPAFLIAAGLEPPKSFLVH-SHW 313 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~---~---h~~~~~a~~~~~~~~~~~~~~~h-g~~ 313 (528)
.+-|.. ++-.-+|.. |..+ -+.|.+.+|.+|+. - +...+..+..++|+++|. +.| +++
T Consensus 268 ~~h~~~-Gd~~~i~Pt----Y~fA--------~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~--~~H~~~L 332 (567)
T PRK04156 268 TPHPRV-GDKYRVWPT----YNFA--------VAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPE--TIHYGRL 332 (567)
T ss_pred CCcccc-CCCeEEEEE----eccC--------ceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCce--EEEccee
Confidence 222211 111112211 1111 15677777777775 2 233455556778886543 556 888
Q ss_pred eeCCCcccccC-------C--------CccCcchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHH
Q psy4049 314 TVDGVKMSKSV-------G--------NVVDPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNIL 367 (528)
Q Consensus 314 ~~~g~KmSkS~-------g--------n~i~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~ 367 (528)
..+|.|||||. | +..++..+.. ++.|+++|.|++..+...++..|+++.+.+..
T Consensus 333 ~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~n 402 (567)
T PRK04156 333 KIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAIN 402 (567)
T ss_pred cCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Confidence 88999999998 4 2345566655 49999999999988765689999999998763
No 74
>KOG1195|consensus
Probab=99.70 E-value=2e-15 Score=150.02 Aligned_cols=368 Identities=12% Similarity=0.069 Sum_probs=230.8
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHH---HcC------CC---
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI---KHK------LE--- 69 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~---~~g------~~--- 69 (528)
+.++++|..+.|+.+.++|+||+|+.+++-+++...+.. |++|..+...-|.|...---+. +.| .+
T Consensus 108 ~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~--G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~ 185 (567)
T KOG1195|consen 108 SGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEAL--GWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIK 185 (567)
T ss_pred cCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhh--CCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHH
Confidence 468899999999999999999999999999999999999 9999988877776543221110 001 00
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHH
Q psy4049 70 ----------------------------------------TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNT 109 (528)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~ 109 (528)
++.+-+...+...+.+++|||.||.+...+ ..+.+..+.
T Consensus 186 hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gES-qv~~e~~~~ 264 (567)
T KOG1195|consen 186 HLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGES-QVSNEKMQE 264 (567)
T ss_pred HHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchH-HHHHHHHHH
Confidence 122445556678889999999999994332 257888899
Q ss_pred HHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeee
Q psy4049 110 VWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFK 189 (528)
Q Consensus 110 ~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~ 189 (528)
+...+.++|++...++...++-.. + +...-.+.+-...|.+. |+
T Consensus 265 ~~d~~rs~~l~~e~dG~~vidL~~--~-------------------------~~~~~~~~V~ksdgttL--------Yl- 308 (567)
T KOG1195|consen 265 ALDLLRSANLTEEIDGTIVIDLSK--I-------------------------DKKAGKAVVQKSDGTTL--------YL- 308 (567)
T ss_pred HHHHHHhcCCcccCCCcEEEEecc--c-------------------------CcccceEEEEcCCCcee--------hH-
Confidence 999999988776655544332210 0 00000011111122221 10
Q ss_pred ccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCC
Q psy4049 190 LSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPD 269 (528)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~ 269 (528)
...+.. .+.. +.+...
T Consensus 309 ----tRdiaa--------------------al~R-l~~y~f--------------------------------------- 324 (567)
T KOG1195|consen 309 ----TRDIAA--------------------ALDR-LEKYSF--------------------------------------- 324 (567)
T ss_pred ----HHHHHH--------------------HHHH-HHhcCc---------------------------------------
Confidence 000111 1110 111111
Q ss_pred CCCCCccceEeeecccc-hhhhHHHHHHhhcCCCC--CcEEEEeeeeeeCCCcccccCCCccCcchhhh-----------
Q psy4049 270 FHTWPPHIQILGKDILK-FHGIYWPAFLIAAGLEP--PKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLS----------- 335 (528)
Q Consensus 270 ~~~~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~--~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~----------- 335 (528)
..-+++....|-- |-..| -++..+|..+ .-.+...|.+ .=||+++|+++-+.|+++
T Consensus 325 ----dr~iYVvd~~Q~~hf~~lf--~ilk~mg~~~a~~~qHV~~G~v----~GmsTRkG~~~fl~dil~e~re~m~e~M~ 394 (567)
T KOG1195|consen 325 ----DRLIYVVDSQQKDHFCQLF--EILKKMGFDWAKKLQHVNFGRV----QGMSTRKGKVVFLDDILEEAREQMLEVMA 394 (567)
T ss_pred ----ceEEEEechHHHHHHHHHH--HHHHHhCchhhhhcceeccccc----ccccccCCceeeHHHHHHHHHHHHHHHHH
Confidence 1125555553332 22333 3445666653 2222323433 448888888887777765
Q ss_pred -----------------hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-Ccc
Q psy4049 336 -----------------DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNP-LVN 397 (528)
Q Consensus 336 -----------------~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~-~~~ 397 (528)
..|..++..-.+..++ .++..|+++.+-+. +++..-++++.+.|+.++..+.....+ ..+
T Consensus 395 s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr-~s~yeF~w~~~~~~-~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~ 472 (567)
T KOG1195|consen 395 SNKTKPVQMANPDEVADRLGLSAVIVQDFKGRR-ISNYEFSWNRVLSF-EGDTGPYLQYTHSRLRSLERKFSDVTLDDLD 472 (567)
T ss_pred hccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHh-cccceEEhhhhhee-cCCchHHHHHHHHHHHHHHHhccccCchhhh
Confidence 5788888888886654 78999999998654 455666999999999998665543222 222
Q ss_pred cchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc-HHHHHHHHHHH
Q psy4049 398 RECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK-IEELNLVLGVT 476 (528)
Q Consensus 398 ~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~-~~~~~~~~~~l 476 (528)
...+..+ ..+.-..++..|..+++.+..++|+++++.++.+++.++..+++++...+ +.....+ .-.+..+...+
T Consensus 473 ~~d~~~l--~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~--V~d~~~eia~aRL~Lf~Av 548 (567)
T KOG1195|consen 473 EIDFSLL--TEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILW--VKDSPMEIALARLLLFSAV 548 (567)
T ss_pred ccchhhc--CChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhhee--ecCCcHHHHHHHHHHHHHH
Confidence 2222211 12335678899999999999999999999999999999999999887654 2222111 33455566677
Q ss_pred HHHHHHHHHccc
Q psy4049 477 FEVLRICGIGLQ 488 (528)
Q Consensus 477 ~~~l~~l~~ll~ 488 (528)
.++|.+.+.+|+
T Consensus 549 RqVL~ngm~lLG 560 (567)
T KOG1195|consen 549 RQVLNNGMRLLG 560 (567)
T ss_pred HHHHHhHHHHhC
Confidence 777777777653
No 75
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.60 E-value=2e-14 Score=134.64 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=75.5
Q ss_pred EECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy4049 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKT 87 (528)
Q Consensus 8 v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 87 (528)
++--+|.|||.+||||++++++.++++| ++++.++.-+||.+.+.+ + ....+.+.|.++|++
T Consensus 3 ~~RfaPsPtG~lHiG~~rtal~~~l~Ar-------~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~w 64 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARAAILNGEYAK-------MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEW 64 (240)
T ss_pred eEeCCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHH
Confidence 5667899999999999999999999999 556667777777755442 1 233344459999999
Q ss_pred cCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 88 YDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 88 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
||+.+|..+..++ +.+..+++.++|.++|.+|.
T Consensus 65 LGl~~d~~~~qS~--r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 65 LGVKWDEVVIASD--RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred cCCCCCCccchhc--cHHHHHHHHHHHHHcCCccc
Confidence 9999996645455 88899999999999999996
No 76
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.59 E-value=1.6e-14 Score=124.98 Aligned_cols=127 Identities=41% Similarity=0.584 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhcccC-CCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy4049 368 NAELANTLGNLLNRCLSKSIN-PDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH 446 (528)
Q Consensus 368 ~~~l~~~l~n~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~ 446 (528)
|+++.++++|+++|+.++..+ .++..|... .....|++++..++++..++.++|++|+++++++.+++|++
T Consensus 2 n~~l~~~~gnll~r~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 73 (129)
T cd07957 2 NSELANNLGNLVNRTLNMASKYFGGVVPEFG--------GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELAR 73 (129)
T ss_pred cHHHHhhHhhHHHHHHHHHHHHcCCcCCCCC--------CCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345778889999998876532 233333210 12456899999999999999999999999999999999999
Q ss_pred HHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHc
Q psy4049 447 LANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRL 502 (528)
Q Consensus 447 ~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l 502 (528)
.+|+|++..+||.+.+++..+.++.++.++.++++.++.+|+||||+++|++|+.|
T Consensus 74 ~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 74 AANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999999999977654224456778889999999999999999999999999865
No 77
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.55 E-value=1.9e-13 Score=141.25 Aligned_cols=277 Identities=17% Similarity=0.113 Sum_probs=162.8
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-+++--+|.|||.|||||++++++...+|| +.. |.-++.+--+|. ..-...+.+.|.++|
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~g--G~~iLRiEDTDp----------------~R~~~e~~~~I~~dL 70 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYK--GRLILRFDDTNP----------------SKEKAEFEESIIEDL 70 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEECCCCC----------------CccchHHHHHHHHHH
Confidence 478889999999999999999999999998 556 877777766663 122456778899999
Q ss_pred hhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCC
Q psy4049 86 KTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKN 165 (528)
Q Consensus 86 ~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g 165 (528)
++||+.+|..+..++ +.+...+...+|.++|.+|... |+..+- -..+.-...|++.. ..+++.-
T Consensus 71 ~WLGl~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C~-----cs~eel-~~~r~~~~~~~~R~--------~s~ee~l 134 (523)
T PLN03233 71 GKIEIKPDSVSFTSD--YFEPIRCYAIILIEEGLAYMDD-----TPQEEM-KKERADRAESKHRN--------QSPEEAL 134 (523)
T ss_pred HHhCCCCCCCccccc--cHHHHHHHHHHHHHcCCeEecC-----CCHHHH-HHHHhhhccCcccc--------CCHHHHH
Confidence 999999997655555 8899999999999999999643 433210 00000000000000 0000000
Q ss_pred CC-cccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccC
Q psy4049 166 EG-QYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP 244 (528)
Q Consensus 166 ~~-~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip 244 (528)
.. ...| .|. .....|.+++.- .+ ..-+..+.||.+-|.. |.+-|
T Consensus 135 ~~~~~m~--~G~----~~~~~~~lR~K~--------------d~----------~~~n~~~~D~Vi~R~d-----~~~h~ 179 (523)
T PLN03233 135 EMFKEMC--SGK----EEGGAWCLRAKI--------------DM----------QSDNGTLRDPVLFRQN-----TTPHH 179 (523)
T ss_pred HHHHHHh--ccc----ccCCCeEEEEeC--------------cc----------cCCCCCCcCCEEEEEc-----CCccc
Confidence 00 0000 010 001123332210 00 0011236788888763 22222
Q ss_pred CCCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc------hhhhHHHHHHhhcCCCCCcEEEEeeeeeeCC
Q psy4049 245 DDDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK------FHGIYWPAFLIAAGLEPPKSFLVHSHWTVDG 317 (528)
Q Consensus 245 ~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~------~h~~~~~a~~~~~~~~~~~~~~~hg~~~~~g 317 (528)
-.+. . | + ++|.|.= -+.|-+.+|..|+. .+...+..+..++|+++|. ++..+.+.+.|
T Consensus 180 ~~Gd-~---~-~---------~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~-~~~f~rln~~~ 244 (523)
T PLN03233 180 RSGT-A---Y-K---------AYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPR-IHAFARMNFMN 244 (523)
T ss_pred ccCC-c---c-c---------ceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCe-eeeeEEECCCC
Confidence 1110 0 1 0 1111110 13444444444442 2344555667788987665 33346677899
Q ss_pred CcccccC------CCcc---------Ccchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 318 VKMSKSV------GNVV---------DPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 318 ~KmSkS~------gn~i---------~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
.|||||+ .+.+ ++..+.+ +|.|+++|-|++..+....+..++++.+.+..+
T Consensus 245 ~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR 311 (523)
T PLN03233 245 TVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENK 311 (523)
T ss_pred CcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHH
Confidence 9999996 3333 3555554 699999999999998878899999999987643
No 78
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.55 E-value=1.6e-13 Score=126.00 Aligned_cols=150 Identities=18% Similarity=0.167 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy4049 358 YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKG 437 (528)
Q Consensus 358 f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~ 437 (528)
++.+.+++. +++.++++|+++.+.....+.. +....... +.....|+|++.+++.+..++.++|++|+++.+
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~~~---~~~~~~~~---~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a 72 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLNDFD---PAKDAVPY---EELLELDRYALHRLNELIKEVREAYENYEFHKV 72 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccCCC---cccccCCh---hhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 345666664 3478999999877654222211 11000000 123578999999999999999999999999999
Q ss_pred HHHHHHHHH--HHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC-----Ccccc
Q psy4049 438 VDSIILVLH--LANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP-----TNERL 510 (528)
Q Consensus 438 ~~~l~~~~~--~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~-----~~~~~ 510 (528)
+..+++|+. .+|.|++..+||..........+..+..++..+++.++++|+|||||++|++|+.|+.. .....
T Consensus 73 ~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~~~~ 152 (180)
T cd07960 73 YQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLED 152 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCeeccC
Confidence 999999995 78999999999865321111123456677889999999999999999999999999753 23578
Q ss_pred ccccc
Q psy4049 511 WDNMR 515 (528)
Q Consensus 511 w~~~~ 515 (528)
||..+
T Consensus 153 wP~~~ 157 (180)
T cd07960 153 WPELP 157 (180)
T ss_pred CCCCc
Confidence 99876
No 79
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.51 E-value=2.9e-13 Score=124.59 Aligned_cols=152 Identities=14% Similarity=0.229 Sum_probs=108.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy4049 358 YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKG 437 (528)
Q Consensus 358 f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~ 437 (528)
|+++.++.. .+++.++++|++..+.... +.....+....... ..+...|+|++.+++++..++.++|++|+++.|
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~-~~~~~~~~~~~~~~---~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a 75 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYA-NLDGFDPGKDDDAV---ASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTA 75 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHhCCCCCcccccc---ccCchhHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 677787765 3458999999986664311 10011111000000 123578999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC-------Cccc
Q psy4049 438 VDSIILVLHL-ANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP-------TNER 509 (528)
Q Consensus 438 ~~~l~~~~~~-~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~-------~~~~ 509 (528)
++.+++|+.. ++.|++..|+. +..++....+.....++..+++.++.+|+||+||++|++|+.++.. ....
T Consensus 76 ~~~l~~f~~~~~~~Y~e~~K~~-~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~ 154 (183)
T cd07961 76 VRALLEFIDELTNWYIRRNRKR-FWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLL 154 (183)
T ss_pred HHHHHHHHHHhhhhHhhhchHH-hcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeee
Confidence 9999999974 57798887752 2222111234456778889999999999999999999999999742 2357
Q ss_pred cccccc
Q psy4049 510 LWDNMR 515 (528)
Q Consensus 510 ~w~~~~ 515 (528)
.||..+
T Consensus 155 ~wP~~~ 160 (183)
T cd07961 155 DWPEVD 160 (183)
T ss_pred cCCCCc
Confidence 888765
No 80
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.51 E-value=2.3e-13 Score=139.01 Aligned_cols=95 Identities=23% Similarity=0.163 Sum_probs=77.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--.|.|||.|||||+|+++....+|| +.. |.-++.+--+|- ..-.+.+.+.|+++|+
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~g--G~fiLRIEDTD~----------------~Rs~~~~~~~I~e~L~ 62 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHG--GKFILRIDDTDL----------------ERSKQEYADAIAEDLK 62 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEeccCCc----------------ccchHHHHHHHHHHHH
Confidence 45677899999999999999999999999 556 777777776662 1224778889999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+|||.+|.++..++ ..+.+.+++.+|.++|.+|..
T Consensus 63 wLGI~~De~y~QSe--r~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 63 WLGINWDRTFRQSD--RFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred HcCCCCCccccHHH--HHHHHHHHHHHHHHCCCEEEe
Confidence 99999998755444 557899999999999999853
No 81
>PLN02907 glutamate-tRNA ligase
Probab=99.48 E-value=1.1e-12 Score=142.53 Aligned_cols=274 Identities=18% Similarity=0.119 Sum_probs=162.1
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-+++--+|.|||.|||||++++++...+|| +.. |.-++.+--||-- .-...+.+.|.+++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~--G~~iLR~eDTdp~----------------r~~~e~~~~I~~dl 272 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYK--GKLIVRFDDTNPS----------------KESDEFVENILKDI 272 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEecCCCCC----------------cCChHHHHHHHHHH
Confidence 478999999999999999999999999999 566 8777777666631 12346778899999
Q ss_pred hhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCC
Q psy4049 86 KTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKN 165 (528)
Q Consensus 86 ~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g 165 (528)
++||+.+|..+.+++ +.+...+...+|+++|.+|... |+.. ++... ...|
T Consensus 273 ~wLG~~~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~~~-----~~~~-------~~~~~----------------~~~~ 322 (722)
T PLN02907 273 ETLGIKYDAVTYTSD--YFPQLMEMAEKLIKEGKAYVDD-----TPRE-------QMRKE----------------RMDG 322 (722)
T ss_pred HHcCCCCCCcccccc--cHHHHHHHHHHHHHcCCeeecC-----CCHH-------HHHHH----------------HhcC
Confidence 999999997655666 8899999999999999999522 2221 11000 0000
Q ss_pred CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHh--CCCcccchhhHHHHH-HHHhccCCCccccccCCCcccccc
Q psy4049 166 EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDK--NEDVVKPKKFYNQLR-NMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~p~~~~~~~~-~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
. -|..-+.+++ +.+..|-+. +...-.+...+-.+. ..-+..+.||.+-|.. |.+
T Consensus 323 ~---~~~~R~~~~e---------------e~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~-----~~~ 379 (722)
T PLN02907 323 I---ESKCRNNSVE---------------ENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCN-----PTP 379 (722)
T ss_pred C---CCCccCCCHH---------------HHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEec-----CCc
Confidence 0 0100011111 111111000 000000000000000 0001126777777763 222
Q ss_pred cCCCCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc------hhhhHHHHHHhhcCCCCCcEEEEeeeeee
Q psy4049 243 VPDDDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK------FHGIYWPAFLIAAGLEPPKSFLVHSHWTV 315 (528)
Q Consensus 243 ip~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~------~h~~~~~a~~~~~~~~~~~~~~~hg~~~~ 315 (528)
-|.. ++..++ +|.|.= -+.|-+.+|..|+. .+.-.+..+..++|++.| .++..+++.+
T Consensus 380 h~~~-gd~~~~-------------~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p-~~~~f~~l~~ 444 (722)
T PLN02907 380 HHRI-GSKYKV-------------YPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKV-HIWEFSRLNF 444 (722)
T ss_pred cccc-CCccce-------------eeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCC-eeEEEEEEcC
Confidence 1110 111111 111111 14455556655553 123345556678898766 5666688889
Q ss_pred CCCcccccC-------CCc--------cCcchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHH
Q psy4049 316 DGVKMSKSV-------GNV--------VDPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNIL 367 (528)
Q Consensus 316 ~g~KmSkS~-------gn~--------i~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~ 367 (528)
+|.|||||+ |-+ -+++.+.. +|.++++|-|+...+...++..|+++.+....
T Consensus 445 ~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~n 512 (722)
T PLN02907 445 VYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTIN 512 (722)
T ss_pred CCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHH
Confidence 999999998 332 12344433 59999999999998887889999999998763
No 82
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.46 E-value=1.7e-12 Score=134.71 Aligned_cols=277 Identities=16% Similarity=0.070 Sum_probs=158.4
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||++++++...+|| +.. |.-++.+--+|.- .-...+.+.|.++|+
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~--G~~iLRieDTd~~----------------r~~~e~~~~I~~dL~ 89 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYG--GKCNLRFDDTNPE----------------KEDQEYVDSIKEDVR 89 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEECCCCCC----------------cCChHHHHHHHHHHH
Confidence 67888999999999999999999999999 556 8777777666532 124467788999999
Q ss_pred hcCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCC
Q psy4049 87 TYDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKN 165 (528)
Q Consensus 87 ~l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g 165 (528)
+||+.+| ..+.+++ +.+...+...+|.++|.+|... |+..+- -..+... ...|
T Consensus 90 wLGi~~d~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c~-----cs~eei-~~~R~~~------------------~~~g 143 (554)
T PRK05347 90 WLGFDWSGELRYASD--YFDQLYEYAVELIKKGKAYVDD-----LSAEEI-REYRGTL------------------TEPG 143 (554)
T ss_pred HcCCCCCCCceeeec--CHHHHHHHHHHHHHcCCEeeCC-----CCHHHH-HHHhhhh------------------hhcC
Confidence 9999995 4333444 6666667778999999999643 443210 0000000 0000
Q ss_pred CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccch---hhHHHH-HHHHhccCCCccccccCCCccccc
Q psy4049 166 EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPK---KFYNQL-RNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~~~~-~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
.. |..-+.+++ +.+..|-+..... .++ ..+..+ ...-+..+.||.|-|.. . .
T Consensus 144 ~~---~~~R~~s~e---------------enl~~~~~m~~G~-~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~---~--~ 199 (554)
T PRK05347 144 KN---SPYRDRSVE---------------ENLDLFERMRAGE-FPEGSAVLRAKIDMASPNINMRDPVLYRIR---H--A 199 (554)
T ss_pred CC---CCccCCCHH---------------HHHHHHHHHHCCC-CCCCcEEEEEEeeccCCCCCCCCCEEEEec---C--C
Confidence 00 000000000 0111111000000 000 000000 00000126788887752 1 1
Q ss_pred ccCCCC-CCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc------hhhhHHHHHHhhcCCCCCcEEEEeeee
Q psy4049 242 PVPDDD-TQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK------FHGIYWPAFLIAAGLEPPKSFLVHSHW 313 (528)
Q Consensus 242 ~ip~~~-~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~------~h~~~~~a~~~~~~~~~~~~~~~hg~~ 313 (528)
|-|-.. ..++ ||.|.= -+.|-+.+|..|+- .+...+..++.++|.......+..+++
T Consensus 200 ~H~r~G~k~~i---------------yPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~F~rl 264 (554)
T PRK05347 200 HHHRTGDKWCI---------------YPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL 264 (554)
T ss_pred CCCccCCceee---------------ecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCCCCceEEEEEE
Confidence 111110 1111 121111 14455666666653 244455566778885433345666878
Q ss_pred eeCCCcccccCCCc------c---------Ccchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 314 TVDGVKMSKSVGNV------V---------DPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 314 ~~~g~KmSkS~gn~------i---------~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
.++|.|||||++.. + ++..+.+ +|.|+|||=|++..+....+..++++.+.+..+
T Consensus 265 n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nR 335 (554)
T PRK05347 265 NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIR 335 (554)
T ss_pred CCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHH
Confidence 88999999998541 2 4566554 699999999999988777889999999987643
No 83
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.46 E-value=3.8e-12 Score=118.91 Aligned_cols=94 Identities=18% Similarity=0.085 Sum_probs=76.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+|+--+|.|||+||+||++++++...++| +.. |.-++.+--+|.- .-...+.+.|.++|+
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~--G~~iLRieDtD~~----------------R~~~~~~~~I~~dL~ 61 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYG--GRCNLRFDDTNPE----------------KEEEEYVDSIKEDVK 61 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEecCCCCc----------------ccchHHHHHHHHHHH
Confidence 46777899999999999999999999998 556 8777777666532 234567788999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
+||+.+|..+..++ +.+.-++...+|.++|.+|.
T Consensus 62 wlGl~wD~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 62 WLGIKPYKVTYASD--YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HcCCCCCCceeccc--CHHHHHHHHHHHHHcCCeec
Confidence 99999995433344 77888999999999999997
No 84
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.46 E-value=4.3e-12 Score=132.66 Aligned_cols=275 Identities=14% Similarity=0.077 Sum_probs=157.6
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-+++--+|.|||+|||||++++++...+|| +.. |.-++.+--+|.- .-...+.+.|.++|
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~g--G~~iLRiEDTDp~----------------R~~~e~~d~IleDL 111 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD--KYK--GKLVFRFDDTNPS----------------KEKEHFEQAILDDL 111 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEEcCCCCc----------------ccCHHHHHHHHHHH
Confidence 378889999999999999999999999999 556 8777777655522 23456788899999
Q ss_pred hhcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCC
Q psy4049 86 KTYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEK 164 (528)
Q Consensus 86 ~~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (528)
++||+.+|. .+..++ +.+...+...+|.++|.+|. .+|+..+ +... .+.
T Consensus 112 ~WLGl~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY~-----c~cs~ee--i~~~--r~~------------------- 161 (601)
T PTZ00402 112 ATLGVSWDVGPTYSSD--YMDLMYEKAEELIKKGLAYC-----DKTPREE--MQKC--RFD------------------- 161 (601)
T ss_pred HHCCCCCCCceeeccc--cHHHHHHHHHHHHHcCCEEE-----ecCCHHH--HHHH--HhC-------------------
Confidence 999999984 434455 88999999999999999992 3344321 1000 000
Q ss_pred CCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCccc--chhhHHHHH-HHHhccCCCccccccCCCccccc
Q psy4049 165 NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVK--PKKFYNQLR-NMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 165 g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--p~~~~~~~~-~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
|.. ..| -+.+++ +.+..|-........ +...+..+. .-.+..+.||.+-|.. . .
T Consensus 162 g~p-~~~--R~~s~e---------------e~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~---~--~ 218 (601)
T PTZ00402 162 GVP-TKY--RDISVE---------------ETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVN---L--T 218 (601)
T ss_pred CCC-CCC--CCCCHH---------------HHHHHHHhccccccCCCceEEEEecccCCCCCCccCCEEEEEc---C--C
Confidence 100 011 011111 111111110000000 000000000 0001125677766642 1 1
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc------hhhhHHHHHHhhcCCCCCcEEEEeeeee
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK------FHGIYWPAFLIAAGLEPPKSFLVHSHWT 314 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~------~h~~~~~a~~~~~~~~~~~~~~~hg~~~ 314 (528)
+-|-. ++. | + ++|.|.= -+.|-+.+|..|+- .+...+..+..++|+++|. ++..+.+.
T Consensus 219 ~h~rt-Gdk---~-d---------gyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~-~~h~~rLn 283 (601)
T PTZ00402 219 PHARQ-GTK---Y-K---------AYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPI-VEDFSRLN 283 (601)
T ss_pred ccccc-CCC---C-c---------eeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCce-EEEEeeEc
Confidence 11100 000 0 0 1111111 13455555555543 2344555667788987654 33337777
Q ss_pred eCCCcccccCCCcc---------------Ccchhh-hhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 315 VDGVKMSKSVGNVV---------------DPMSKL-SDFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 315 ~~g~KmSkS~gn~i---------------~~~~~~-~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
.+|.|||||.+... ++.-+. ..+.++++|-|+...+...++..|+++.+.....
T Consensus 284 ~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 284 MEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred CCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 89999999987521 111121 3699999999999888878899999999987643
No 85
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.45 E-value=1e-12 Score=133.66 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=74.3
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy4049 11 PIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDI 90 (528)
Q Consensus 11 ~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i 90 (528)
-.|.|||.|||||+|++++...+|| +.. |.-++.+--+|.- .-...+.+.+.++|++|||
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~g--G~fiLRiEDTD~~----------------R~~~e~~~~I~~~L~WlGl 63 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQN--EDFLIRIEDTDKE----------------RNIEGKDKEILEILNLFGI 63 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcC--CEEEEEeCcCCCC----------------cCChHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999 667 8888888877742 1234667788999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 91 EYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 91 ~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
++|.-+..++ +.+.-.++..+|.++|.+|.
T Consensus 64 ~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 64 SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCCCeehhc--cHHHHHHHHHHHHHcCCeee
Confidence 9996544454 67788889999999999994
No 86
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.44 E-value=3.2e-12 Score=119.44 Aligned_cols=90 Identities=19% Similarity=0.112 Sum_probs=72.0
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
.++--+|.|||+||+||+|++++...++| +.. |.-++.+--+|.- .-...+.+.|.++|+
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~--G~~iLRieDtD~~----------------R~~~~~~~~I~~dL~ 61 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYG--GKFILRIEDTDPE----------------RSRPEYVESILEDLK 61 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcC--CeEEEEeCcCCCC----------------CCChHHHHHHHHHHH
Confidence 35667899999999999999999999999 566 8888888777641 123467788999999
Q ss_pred hcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCC
Q psy4049 87 TYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRD 118 (528)
Q Consensus 87 ~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g 118 (528)
+||+.+|. -+..++ +.+.-++.+.+|.++|
T Consensus 62 wlGl~wd~~~~~QS~--r~~~y~~~~~~L~~~g 92 (230)
T cd00418 62 WLGLDWDEGPYRQSD--RFDLYRAYAEELIKKG 92 (230)
T ss_pred HcCCCCCCCeeehhc--CHHHHHHHHHHHHHcC
Confidence 99999995 333344 7778888999999998
No 87
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.43 E-value=7e-13 Score=138.17 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=74.2
Q ss_pred EECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy4049 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKT 87 (528)
Q Consensus 8 v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 87 (528)
++--+|.|||.|||||+|++++...++| +.. |.-++.+--||.- .-...+.+.|.++|++
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~--G~~iLRieDtD~~----------------R~~~~~~~~i~~~L~w 62 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAK--HTG--GEFILRIEDTDLE----------------RNIEEAEEAILEGLKW 62 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHH--HcC--CEEEEEeCcCCCc----------------cCChHHHHHHHHHHHH
Confidence 5667899999999999999999999999 666 8777777766631 1234577789999999
Q ss_pred cCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 88 YDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 88 l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
|||.+| .-+..++ +.+.-+++..+|.++|.+|..
T Consensus 63 lGl~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 63 LGISWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred CCCCCCCCeeehhC--CHHHHHHHHHHHHHcCCEEec
Confidence 999999 3333344 567778888999999999943
No 88
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.43 E-value=1e-12 Score=137.39 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=77.4
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-+|+--+|.|||+|||||++++++.+.++| +.. |.-++.+--+|. + .-...+.+.|.+++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~--G~~iLRidDTDp---~-------------R~~~e~~~~I~edL 152 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYK--GKLIIRFDDTDP---R-------------RVKPEAYDMILEDL 152 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcC--CEEEEEeCcCCc---c-------------cccHHHHHHHHHHH
Confidence 478899999999999999999999999997 344 555555444443 1 11234788899999
Q ss_pred hhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccc
Q psy4049 86 KTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK 124 (528)
Q Consensus 86 ~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~ 124 (528)
++||+.+|..+.+++ |.+...++..+|.++|.+|...
T Consensus 153 ~wLGi~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 153 DWLGVKGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred HHcCCCCCccccccc--cHHHHHHHHHHHHHcCCceeec
Confidence 999999998766666 8999999999999999999644
No 89
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.43 E-value=1.1e-12 Score=136.71 Aligned_cols=95 Identities=15% Similarity=0.032 Sum_probs=77.1
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|++++...+|| +.. |.-++.+--||.- .....+.+.+.++|+
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~--G~fiLRieDtD~~----------------R~~~~~~~~i~~~L~ 64 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHG--GKFILRIEDTDQE----------------RSTEEAEEAILEGLK 64 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcC--CEEEEEeCcCCCC----------------CCChHHHHHHHHHHH
Confidence 56778899999999999999999999999 666 8888888777742 234567788999999
Q ss_pred hcCcccCCC--------CCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTHY--------VRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~~--------~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+|||.+|.- +..++ +.+.-+++..+|.++|.+|..
T Consensus 65 wlGl~~De~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 65 WLGLDWDEGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred HCCCCCCCCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeec
Confidence 999999943 33343 677888999999999999953
No 90
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.42 E-value=1.8e-12 Score=110.07 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhcccCC-CCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHH
Q psy4049 371 LANTLGNLLNRCLSKSINP-DNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSI-ILVLHLA 448 (528)
Q Consensus 371 l~~~l~n~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l-~~~~~~~ 448 (528)
+.+.++|+++|+.++..+. .+..|. . .....|++++.+++++.+++.++|++|+|+++++.+ +++.+.+
T Consensus 5 ~~~~~~~~l~R~~~~~~~~~~~~~~~---~------~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~ 75 (117)
T cd07959 5 EANSAILRLERFYELAEELIETEGEL---E------ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc---c------ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556777777777664331 111221 0 134679999999999999999999999999999997 8999999
Q ss_pred hHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHc
Q psy4049 449 NKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRL 502 (528)
Q Consensus 449 n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l 502 (528)
|+|++..++| ....++..+++.++++|+||+||++|++|+.+
T Consensus 76 ~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 76 DWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 9999887764 12346778999999999999999999999875
No 91
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2e-12 Score=133.03 Aligned_cols=95 Identities=19% Similarity=0.083 Sum_probs=79.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||+|||||+|+++....+|| +.. |.-++.+--||-- .-...+.+.|.++|+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~--G~fiLRiEDTD~~----------------R~~~e~~~~I~~~L~ 69 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYG--GKFILRIEDTDPE----------------RETPEAEDAILEDLE 69 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhC--CEEEEEecCCCCC----------------CCCHHHHHHHHHHHH
Confidence 78889999999999999999999999999 666 8888888877741 123456778999999
Q ss_pred hcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+||+++|. .+..|+ +.+.-.+...+|+++|.+|..
T Consensus 70 WLGl~wde~~~~QS~--r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 70 WLGLDWDEGPYYQSE--RFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred hcCCCCCCceeehhh--hHHHHHHHHHHHHHCCCeEEe
Confidence 99999996 444455 888999999999999999954
No 92
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.39 E-value=1.3e-11 Score=128.05 Aligned_cols=272 Identities=17% Similarity=0.088 Sum_probs=157.2
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||++++++...+|| +.. |.-++.+--+|- ..-...+.+.|.++|+
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar--~~g--G~~iLRiEDTDp----------------~r~~~e~~~~I~~dL~ 111 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHG--GKCYLRYDDTNP----------------ETEEQVYIDAIMEMVK 111 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEECCCCc----------------cccChHHHHHHHHHHH
Confidence 57888999999999999999999999999 556 777777665552 2234578888999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCch---hhhhh--hhccCCC
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE---EESFL--LEHQIRP 161 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~---~~~~~--~~~~~~~ 161 (528)
+||+.+|..+.+++ |.+...+...+|+++|.+|... |+..+ .-..+.-...|++. .+..+ -+ .+.
T Consensus 112 wLGi~~D~~~~qS~--y~~~~ye~A~~Li~~G~AY~C~-----cs~ee-i~~~R~~~~~~~~R~~~~eenL~lfe-~M~- 181 (574)
T PTZ00437 112 WMGWKPDWVTFSSD--YFDQLHEFAVQLIKDGKAYVDH-----STPDE-LKQQREQREDSPWRNRSVEENLLLFE-HMR- 181 (574)
T ss_pred HcCCCCCCCCcCch--hHHHHHHHHHHHHHcCCEEEcC-----CCHHH-HHHHhhcccCCccccCCHHHHHHHHH-HHh-
Confidence 99999996644443 7777778888999999999543 43321 00000000011000 00000 00 000
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccc
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
.|. ...|.. ++|.. ++ . -.|+. .+.||.+-|-. .=-+
T Consensus 182 --~g~-----~~~g~~-vlR~K------~d------------~---~~~n~-----------~~rD~v~~Ri~---~~~h 218 (574)
T PTZ00437 182 --QGR-----YAEGEA-TLRVK------AD------------M---KSDNP-----------NMRDFIAYRVK---YVEH 218 (574)
T ss_pred --hcc-----cccCCe-EEEEe------Cc------------C---CCCCC-----------ccccCeeeeec---cCCc
Confidence 000 001111 11110 00 0 01111 16677776642 1112
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc----h--hhhHHHHHHhhcCCCCCcEEEEeeeee
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK----F--HGIYWPAFLIAAGLEPPKSFLVHSHWT 314 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~----~--h~~~~~a~~~~~~~~~~~~~~~hg~~~ 314 (528)
+..+ +.| .+||-|.= -+.+-+.+|..|+. | ++..+--++..+++..|. .|-.+.+.
T Consensus 219 ~~~g------dk~----------~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~p~-~~ef~rln 281 (574)
T PTZ00437 219 PHAK------DKW----------CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPH-VWEFSRLN 281 (574)
T ss_pred CCCC------Cce----------EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcccc-eEeeeeec
Confidence 2111 111 01221111 25677888888874 1 233322224556654332 45557788
Q ss_pred eCCCcccccCCCc---------------cCcchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 315 VDGVKMSKSVGNV---------------VDPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 315 ~~g~KmSkS~gn~---------------i~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
++|.|||||+... .++..+.. +|.|++||=|++..+.-.++..++++.+++..+
T Consensus 282 ~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 282 VTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred CCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 9999999998774 23444443 699999999999988777899999999987643
No 93
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.38 E-value=1.2e-11 Score=128.19 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=74.9
Q ss_pred EECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy4049 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKT 87 (528)
Q Consensus 8 v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 87 (528)
++--+|.|||.|||||++++++...+|| +.. |.-++.+--||.. .-...+.+.|.++|++
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~--G~~iLRieDTd~~----------------r~~~e~~~~I~~dL~w 61 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAK--YYN--GTCNLRFDDTNPV----------------KEDPEYVESIKRDVEW 61 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEEcCCCcc----------------cCChHHHHHHHHHHHH
Confidence 5667899999999999999999999999 566 8777777666631 1234677889999999
Q ss_pred cCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeeccc
Q psy4049 88 YDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK 124 (528)
Q Consensus 88 l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~ 124 (528)
||+.+| ..+..++ +.+...+...+|+++|.+|...
T Consensus 62 LG~~~d~~~~~qS~--~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 62 LGFKWEGKIRYSSD--YFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred cCCCCCCCceEccc--cHHHHHHHHHHHHHcCCEEeec
Confidence 999996 3333444 6677778889999999999644
No 94
>PLN02859 glutamine-tRNA ligase
Probab=99.37 E-value=2.6e-11 Score=129.97 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=73.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||++++++...+|| +.. |.-.+.+--+|. ..-...+.+.|.++++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar--~~~--G~~~LRieDTdp----------------~r~~~e~~~~I~edL~ 324 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERG--GCCYLRFDDTNP----------------EAEKKEYIDHIEEIVE 324 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEecCCCC----------------CccchHHHHHHHHHHH
Confidence 56888999999999999999999999999 456 777766665552 2234567888999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+||+.+|..+.+++ |.+...+...+|+++|.+|..
T Consensus 325 WLG~~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 325 WMGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred HcCCCCCCcccccH--hHHHHHHHHHHHHHcCCeEec
Confidence 99999986544444 554444567789999999953
No 95
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.36 E-value=2.1e-11 Score=106.33 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=101.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy4049 358 YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKG 437 (528)
Q Consensus 358 f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~ 437 (528)
|+.+.+... ..+..+++|++..+....... ..+.. .. +.....|.+++..+.++...+.++|++++++++
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~~--~~~~~---~~---~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a 70 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLEDD--DEPEE---DP---ESLSLADRWILSRLNKTVEEVTEALENYRFSEA 70 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHccccc--Ccccc---cc---ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 566666654 347889999987653210111 01000 00 112456889999999999999999999999999
Q ss_pred HHHHHHHHH--HHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHc
Q psy4049 438 VDSIILVLH--LANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRL 502 (528)
Q Consensus 438 ~~~l~~~~~--~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l 502 (528)
+..+++++. .+|+|++..+||.+..+ .+.+.+.+.++.++++.++++|+||+|++++++|+.|
T Consensus 71 l~~i~~~~~~~~~N~Yi~~~~pW~~~~~--~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 71 ATALYEFFWNDFCDWYLELVKPRLYGED--EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHcCCC--hHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 999999986 79999999999976422 3356778889999999999999999999999999865
No 96
>PLN02627 glutamyl-tRNA synthetase
Probab=99.34 E-value=1.2e-11 Score=128.15 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=76.2
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--.|.|||.|||||+|++++...+|| +.. |.-++.+--+|-. .....+.+.|.++|+
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~g--G~fiLRIEDTD~~----------------R~~~e~~~~I~~~L~ 105 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKG--GKFVLRIEDTDLA----------------RSTKESEEAVLRDLK 105 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhC--CEEEEEeCcCCCC----------------CCChHHHHHHHHHHH
Confidence 56777889999999999999999999999 667 8888888777732 124567788999999
Q ss_pred hcCcccCCCCC-------CCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 87 TYDIEYTHYVR-------TTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 87 ~l~i~~d~~~~-------t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
+|||.+|.-.. -..+.+.+.-.++..+|.++|.+|.
T Consensus 106 WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 106 WLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee
Confidence 99999994211 1123367788899999999999994
No 97
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.33 E-value=4.3e-11 Score=129.75 Aligned_cols=279 Identities=15% Similarity=0.078 Sum_probs=158.7
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||++++++...+|| +.. |.-++.+--+|-- .-...+.+.|.++++
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~--G~~~LR~eDTd~~----------------r~~~e~~~~I~~dl~ 91 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYG--GRCHLRMDDTNPE----------------TEDTEYVEAIKDDVR 91 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEeCCCCCC----------------cCChHHHHHHHHHHH
Confidence 67889999999999999999999999998 556 7766666655522 123467788999999
Q ss_pred hcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCC
Q psy4049 87 TYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKN 165 (528)
Q Consensus 87 ~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g 165 (528)
+||+.+|. .+.+++ |.+...+...+|+++|.+|... |+..+ .-..+.. . ...|
T Consensus 92 wLG~~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c~-----cs~ee-i~~~r~~-~-----------------~~~g 145 (771)
T PRK14703 92 WLGFDWGEHLYYASD--YFERMYAYAEQLIKMGLAYVDS-----VSEEE-IRELRGT-V-----------------TEPG 145 (771)
T ss_pred HcCCCCCCCceEeec--CHHHHHHHHHHHHHcCCcccCc-----CCHHH-HHHHHhh-h-----------------hhcC
Confidence 99999983 334555 8888999999999999999643 33221 0000000 0 0000
Q ss_pred CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccch--hhHHHH-HHHHhccCCCccccccCCCcccccc
Q psy4049 166 EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPK--KFYNQL-RNMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~~~~-~~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
...+ | -+.+++ +.+..|-+.....+... ..+-.+ ...-+..++||.+-|.. +.|
T Consensus 146 ~~~~-~--R~~s~e---------------e~l~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~-----~~~ 202 (771)
T PRK14703 146 TPSP-Y--RDRSVE---------------ENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIR-----HAH 202 (771)
T ss_pred CCCC-C--CCCCHH---------------HHHHHHHHHhCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEc-----CCC
Confidence 0000 0 000000 01111100000000000 000000 00001126788888852 122
Q ss_pred cCCCCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccc------hhhhHHHHHHhhcCCCCC-cEEEEeeeee
Q psy4049 243 VPDDDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILK------FHGIYWPAFLIAAGLEPP-KSFLVHSHWT 314 (528)
Q Consensus 243 ip~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~------~h~~~~~a~~~~~~~~~~-~~~~~hg~~~ 314 (528)
-|-. ++. |- .||.|.= -+.|-+.+|.-|+- .+...+..++.++|..++ ..++..|++.
T Consensus 203 H~~~-Gd~---~~----------i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~ 268 (771)
T PRK14703 203 HYRT-GDE---WC----------IYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLA 268 (771)
T ss_pred CCCc-CCC---CC----------cCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCCCCcceeEEEEec
Confidence 2211 000 10 1121111 14455555555543 233445556677865333 4566668888
Q ss_pred eCCCcccccC-------CCcc--------Ccchhhh-hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 315 VDGVKMSKSV-------GNVV--------DPMSKLS-DFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 315 ~~g~KmSkS~-------gn~i--------~~~~~~~-~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
+.|.|||||+ |-+- ++..+.+ +|.|+++|-|++..+....+..++++.+.+..+
T Consensus 269 l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 269 LGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred cCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHH
Confidence 8999999998 4332 3444443 699999999999988777899999999987643
No 98
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.33 E-value=1.7e-11 Score=126.74 Aligned_cols=95 Identities=17% Similarity=0.037 Sum_probs=76.4
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--.|.|||.|||||+|++++...++| +.. |.-++.+--+|- ......+.+.+.++|+
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~g--G~fiLRIEDTD~----------------~R~~~~~~~~i~~~L~ 64 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHN--GKFLLRIEDTDK----------------ERSTKEAVEAIFSGLK 64 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcC--CEEEEEECCCCc----------------cccChHHHHHHHHHHH
Confidence 45777899999999999999999999999 666 888888876653 1234567788999999
Q ss_pred hcCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+||+++| ..+..++ ..+.-.+..++|.++|.+|..
T Consensus 65 WLGl~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 65 WLGLDWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HcCCCCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 9999998 3333444 667888899999999999943
No 99
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.32 E-value=9.7e-11 Score=110.48 Aligned_cols=90 Identities=17% Similarity=0.062 Sum_probs=66.6
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||++++++...++| +.. |.-++.+--+|. .. -...+.+.+.++++
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~--G~~ilRieDtd~------------~r----~~~~~~~~i~~dL~ 61 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALFNYLFAR--KHG--GKFILRIEDTDQ------------ER----SVPEAEEAILEALK 61 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcC--CeEEEEECcCCC------------CC----CchHHHHHHHHHHH
Confidence 35667899999999999999999999999 455 755555555542 11 12356677889999
Q ss_pred hcCcccCC---------CCCCCCHHHHHHHHHHHHHHhhCC
Q psy4049 87 TYDIEYTH---------YVRTTSEHHFRTVNTVWTKLKQRD 118 (528)
Q Consensus 87 ~l~i~~d~---------~~~t~~~~~~~~~~~~~~~L~~~g 118 (528)
+|||.+|. .+..++ +.+...+...+|.++|
T Consensus 62 wlGl~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 62 WLGLDWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HcCCCCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 99999996 333344 6677777788888777
No 100
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.30 E-value=1.2e-11 Score=110.45 Aligned_cols=101 Identities=24% Similarity=0.446 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-H-HHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHccc
Q psy4049 411 LTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL-H-LANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQ 488 (528)
Q Consensus 411 d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~-~-~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~ 488 (528)
|+|++.+++.+.+++.++|++|+|+.|+..+++|+ . .+|.|++..++|....++... +. +..++..+++.++.+|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 78999999999999999999999999999999984 4 469999999998655544333 45 78899999999999999
Q ss_pred ccchHHHHHHHHHc-----CCCC--ccccccc
Q psy4049 489 PIVPKLADKLLTRL-----GIPT--NERLWDN 513 (528)
Q Consensus 489 P~~P~~~e~l~~~l-----~~~~--~~~~w~~ 513 (528)
|||||++|++|+.| +... ....||.
T Consensus 79 P~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~ 110 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE 110 (153)
T ss_dssp TTSHHHHHHHHHHCTTHHTTSSSSGGGS----
T ss_pred CCCcHHHHHHHHHhhhccCCCCCeeeeCCCCC
Confidence 99999999999665 3322 2356885
No 101
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.29 E-value=4.9e-11 Score=101.15 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=87.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy4049 358 YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKG 437 (528)
Q Consensus 358 f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~ 437 (528)
|+.+.++.. .++.+++++++.+... +..|...+ +.....|+++++.+.++.+++.++|++|+++++
T Consensus 1 w~~~~~~~~--~n~l~R~~~~~~~~~~------~~~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a 66 (117)
T cd07958 1 WSDSGVEGA--YRFLNRVWRLVTELAE------ALAAPAAA------AELSEEDKELRRKLHKTIKKVTEDIERLRFNTA 66 (117)
T ss_pred CCcchhHHH--HHHHHHHHHHHHHHHh------hccccccc------cccchhhHHHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345555554 3367777777655332 11111000 012457899999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHc
Q psy4049 438 VDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRL 502 (528)
Q Consensus 438 ~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l 502 (528)
+..++++++.+|+|++...| ...++.++++.++.+|+||+|++++++|+.|
T Consensus 67 ~~~i~~~~~~~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 67 IAALMELVNALYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHHHHHHHHHHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 99999999999999865432 4566778899999999999999999999865
No 102
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.28 E-value=9.7e-12 Score=119.49 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=76.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
|++--.|.|||.|||||+|++++...++| +.. |.-++.+--+|.. . -...+.+.|.++|+
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~g--G~~iLRiEDtD~~------------R----~~~~~~~~I~~dL~ 60 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDAR--AHG--GRWLVRIEDLDPP------------R----EVPGAADDILRTLE 60 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHH--HhC--CEEEEEeCcCCCC------------C----CChHHHHHHHHHHH
Confidence 35667899999999999999999999999 667 8888888877742 1 13356788999999
Q ss_pred hcCcccCCC-CCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTHY-VRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~~-~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+|||.+|.- +..++ +.+.-.++..+|.++|.+|..
T Consensus 61 wLGl~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 61 AYGLHWDGEVVYQSQ--RHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HcCCCCCCCeeeeeC--CHHHHHHHHHHHHHcCCEEec
Confidence 999999942 23444 778888999999999999943
No 103
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.27 E-value=3.2e-11 Score=117.25 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=75.9
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-+++--.|.|||+|||||++++++...++| ... |.-++.+--+|.- .-...+.+.|.++|
T Consensus 5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~--G~~iLRiEDtD~~----------------R~~~~~~~~I~~dL 64 (299)
T PRK05710 5 PYIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHG--GRWLLRIEDIDPP----------------REVPGAADAILADL 64 (299)
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcC--CEEEEEECcCCCC----------------ccchHHHHHHHHHH
Confidence 367888899999999999999999999999 556 7777777655531 12345678899999
Q ss_pred hhcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 86 KTYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 86 ~~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
++|||++|. -+..++ +.+.-+++..+|.++|.+|..
T Consensus 65 ~wlGl~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 65 EWLGLHWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred HHCCCCCCCCceEeec--cHHHHHHHHHHHHHCCCceec
Confidence 999999993 323344 778889999999999999943
No 104
>KOG1149|consensus
Probab=99.13 E-value=3.1e-08 Score=97.49 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=72.3
Q ss_pred ECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q psy4049 9 TTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTY 88 (528)
Q Consensus 9 ~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 88 (528)
+--.|.|+|.||+|-+|+++.-.++|| +.. |.-++.+-.||-- .++....+.+.++|.++
T Consensus 36 vRFAPSPTGfLHlGgLRTALfNYLfAr--k~g--GkFiLRiEDTDq~----------------R~v~gs~e~i~~~L~w~ 95 (524)
T KOG1149|consen 36 VRFAPSPTGFLHLGGLRTALFNYLFAR--KKG--GKFILRIEDTDQK----------------RLIRGSEEAIYEDLKWA 95 (524)
T ss_pred EeecCCCCcceehhhHHHHHHHHHHHH--hcC--CeEEEEecccccc----------------ccccchHHHHHHHHHhc
Confidence 445679999999999999999999999 777 9999998877722 23444556788999999
Q ss_pred CcccCCCCCC-------CCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 89 DIEYTHYVRT-------TSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 89 ~i~~d~~~~t-------~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
||.+|.=.+. -.....+.-.+..++|++.|.+|+
T Consensus 96 nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr 136 (524)
T KOG1149|consen 96 NLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR 136 (524)
T ss_pred CCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE
Confidence 9999943211 233455667778889999999995
No 105
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.13 E-value=6e-10 Score=110.54 Aligned_cols=94 Identities=20% Similarity=0.108 Sum_probs=69.6
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||+|||||++++++...++| +.. |.-++.+--+|.. .. ...+.+.+.++|+
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~--G~~iLRieDtD~~------------R~----~~~~~~~i~~~L~ 61 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYG--GKFILRIEDTDPE------------RC----RPEFYDAILEDLR 61 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTT--SEEEEEEETSSTT------------TC----HHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccC--ceEEEeccccccc------------cc----hhhHHHHHHhhee
Confidence 35666899999999999999999999999 777 9888888877742 12 3466777999999
Q ss_pred hcCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 87 TYDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 87 ~l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
+|||.+| ..+..++ +.+.-++..++|.++|.+|.
T Consensus 62 wlGl~~D~~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 62 WLGLEWDYGPYYQSD--RLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHT---STCEEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred EEEEecCCeEEeHHH--HHHHHHHHHHHHhhcCCCcc
Confidence 9999998 3433344 78888999999999999984
No 106
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.84 E-value=5.8e-08 Score=86.73 Aligned_cols=145 Identities=14% Similarity=0.025 Sum_probs=108.6
Q ss_pred hcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---CcccchhhhccCCChhHH
Q psy4049 336 DFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNP---LVNRECYEVMFTKEPVLT 412 (528)
Q Consensus 336 ~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~ 412 (528)
.+|.|++||.+++..+ .++++|+++.+.+. +++...++++++.|+.+++.+.....+ ..+...+ ..+.++
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~~-~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll-----~~~~E~ 74 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLSF-EGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLL-----PEPDER 74 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHhh-cCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhc-----CCHHHH
Confidence 5688999999998775 89999999997654 334566899999999998765432111 1111111 245788
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc-HHHHHHHHHHHHHHHHHHHHcccc
Q psy4049 413 ELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK-IEELNLVLGVTFEVLRICGIGLQP 489 (528)
Q Consensus 413 ~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~-~~~~~~~~~~l~~~l~~l~~ll~P 489 (528)
.++..+..+++.+..++++.+++.++.++.++...++.|++..+. +..+.. +..+...+..+..++..++.+|+-
T Consensus 75 ~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V--~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi 150 (156)
T cd07956 75 DLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPV--LGAEEELRNARLALVAAARQVLANGLDLLGI 150 (156)
T ss_pred HHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999997652 332222 455677777777888777777643
No 107
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.69 E-value=3.6e-07 Score=77.01 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcc
Q psy4049 408 EPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGL 487 (528)
Q Consensus 408 ~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll 487 (528)
...|+|+++.++.+.+.+.++|++|+++.+++.+++|+...|+|++..+||.+... .....+.++..+++.++++|
T Consensus 38 ~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~~pw~~~~~----~~~~~~~~~~~~l~~l~~lL 113 (117)
T cd07375 38 EEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDELKPALQTEE----LREAVLAVLRAALVVLTKLL 113 (117)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHhhHHHcCch----hHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999976542 23345667789999999999
Q ss_pred cccc
Q psy4049 488 QPIV 491 (528)
Q Consensus 488 ~P~~ 491 (528)
+||+
T Consensus 114 ~P~~ 117 (117)
T cd07375 114 APFT 117 (117)
T ss_pred cCCC
Confidence 9986
No 108
>KOG1147|consensus
Probab=98.31 E-value=1.8e-06 Score=87.37 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=76.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+|+.-||-|||.||||||..+++---++ .. |+=..+.-+||. +|.+=-+++...+.+++.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa----~~---~~G~LIvRFDDT-------------NPaKE~~eFe~~IleDl~ 260 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFA----QA---YQGKLIVRFDDT-------------NPAKENEEFEDVILEDLS 260 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHH----Hh---cCceEEEEecCC-------------CcchhhHHHHHHHHHHHH
Confidence 5677889999999999999886643333 32 233345556655 344446778889999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceee
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKG 127 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~ 127 (528)
.|||.+|.+.-|++ |.+.+.....+|++.|.+|.++.++
T Consensus 261 ~LgIkpd~~TyTSD--yF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 261 LLGIKPDRVTYTSD--YFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HhCcCcceeeechh--hHHHHHHHHHHHHhcCcccccCCcH
Confidence 99999999955566 9999999999999999999888654
No 109
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.14 E-value=1.4e-05 Score=82.19 Aligned_cols=72 Identities=19% Similarity=0.113 Sum_probs=43.8
Q ss_pred CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
+.++++++|.||.. |...-.-+..-++...+-. +.+-.+ ..+|.|||||.||+|++.|= .-+|+.++=++++
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~~~-lt~PlL~g~dG~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 257 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQFG-LTMPLLEGADGTKMGKSAGGAIWLDPE--KTSPYEFYQFWMN 257 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCceE-eccCCccCCCCCccCCCCCCceeccCC--CCCHHHHHHHHHc
Confidence 46789999999975 2222111222334433322 222223 57899999999999998762 2357777777664
No 110
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.7e-05 Score=77.35 Aligned_cols=89 Identities=9% Similarity=0.084 Sum_probs=55.0
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCC-eeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRI-SSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~-~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
.+..|.++. -|+|.+||||..+.+. .++.... ++ ++ |++=.|.|-.- ..+.++++-...+..+.-
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga~~----~~v~~q~--~~~~~-f~~IaDlha~t------~~~~~~~~~l~~~~~e~~ 69 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGAIR----NWVLLQE--EYYEC-FFFIADLHAIT------VRQDPTEEDLRQATREVA 69 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHHHH----HHHHHhc--ccCce-EEEEecHHHhh------cCCCChHHHHHHHHHHHH
Confidence 455666665 7889999999988743 3444444 53 54 44445665221 223344455666666777
Q ss_pred HHHhhcCcccC---CCCCCCCHHHHHH
Q psy4049 83 LMFKTYDIEYT---HYVRTTSEHHFRT 106 (528)
Q Consensus 83 ~~~~~l~i~~d---~~~~t~~~~~~~~ 106 (528)
.++=++||+++ .|.++.-++|.+.
T Consensus 70 a~~LA~GiDP~k~~if~QS~v~e~~eL 96 (314)
T COG0180 70 ADYLAVGLDPEKSTIFLQSEVPEHAEL 96 (314)
T ss_pred HHHHHhccCccccEEEEccCchHHHHH
Confidence 77889999998 4555555555443
No 111
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.02 E-value=9.1e-05 Score=74.95 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=48.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+++++|.++. -|+|.+||||+. ....++++++ . |++|.+.. .|.|..- .+ +.+++++. .+..+..
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~--g~~~~i~I-aD~ha~~-----~~-~~~~e~~~-~~~~~~~ 128 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-F--GANVYIPI-ADDEAYA-----AR-GLSWEETR-EWAYEYI 128 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-c--CCCEEEEe-cchHHHh-----cC-CCCHHHHH-HHHHHHH
Confidence 5677776666 677999999974 3445556555 6 88875443 4554211 11 45665544 4444466
Q ss_pred HHHhhcCcccC
Q psy4049 83 LMFKTYDIEYT 93 (528)
Q Consensus 83 ~~~~~l~i~~d 93 (528)
.++-++|++++
T Consensus 129 ~~~lA~G~Dp~ 139 (368)
T PRK12285 129 LDLIALGFDPD 139 (368)
T ss_pred HHHHHhCCCcc
Confidence 78889999987
No 112
>KOG1148|consensus
Probab=98.01 E-value=8.5e-05 Score=76.33 Aligned_cols=94 Identities=16% Similarity=0.050 Sum_probs=67.8
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
++|--||-|||.|||||+-.+-+-=-+|++. . |. .|+. +||. +|+.=.++|...|+++..
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk~~--~--G~--cyLR-fDDT-------------NPEkEee~yf~sI~e~V~ 308 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAKAH--G--GV--CYLR-FDDT-------------NPEKEEEEYFESIKEMVA 308 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhhhh--C--Ce--EEEe-cCCC-------------CcchhhHHHHHHHHHHHH
Confidence 5788899999999999998754433344422 2 43 2322 2332 455556788999999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
|||..+-.. |.++.|.+..-+.-.+|+++|++|.
T Consensus 309 WLG~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 309 WLGFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HhCCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 999988655 6555577888888889999999984
No 113
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.01 E-value=7.1e-05 Score=72.97 Aligned_cols=71 Identities=14% Similarity=-0.003 Sum_probs=42.1
Q ss_pred CCccceEeeecccchhhhHHHHHHhhcC-CCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHH
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAAG-LEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~~-~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~ 347 (528)
+..+++++|.||.. |...---+..-++ .+.|..+. +-++ .++|.|||||.||.++...+.+ +|+.++-.+.
T Consensus 152 ~~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~p~~l~-~p~l~~l~G~KMSKS~~~~i~l~~~~d--sp~~i~~ki~ 224 (273)
T cd00395 152 EGCDIQPGGSDQWG-NITLGRELARRFNGFTIAEGLT-IPLVTKLDGPKFGKSESGPKWLDTEKT--SPYEFYQFWI 224 (273)
T ss_pred cCCcEEEecHHHHH-HHHHHHHHHHHhCCCCCCeEEe-eccccCCCCCcCCCCCCCCccccccCC--CHHHHHHHHH
Confidence 35689999999974 2222111112232 33443333 3444 5799999999999987654432 5666665555
No 114
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.96 E-value=5.2e-05 Score=78.10 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
+.++++++|.||.. |...---+..-++.++.-.+ ..-++ ..+|+|||||.||.|++.|- .-+|+.++=++++
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~~l-~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQFGL-TMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeEEE-ecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 47889999999975 32221112222343322111 12222 46899999999999999862 2467777777764
No 115
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.91 E-value=0.00012 Score=73.21 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=39.1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.+||||..+.+.. ..+.+... |.++.+. =.|.|-. + ...+++++ .++......++-.+|++++
T Consensus 11 qPTG~~HLGnylga~k~--~~~lq~~~--~~~~~~~-IADlHal---t----~~~~~~~l-~~~~~~~~~~~lA~GlDP~ 77 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKP--ALQMAKNY--EGKALYF-IADYHAL---N----AVHDPEQF-RSYTREVAATWLSLGLDPE 77 (332)
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHhc--CCeEEEE-Eechhhc---c----CCCCHHHH-HHHHHHHHHHHhheeeccc
Confidence 56799999998776442 22233344 6555443 3454421 1 11256654 3444556677789999987
No 116
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.89 E-value=0.00016 Score=73.75 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=52.9
Q ss_pred EECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy4049 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKT 87 (528)
Q Consensus 8 v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 87 (528)
|.++. -|||.+||||..+.+.. ..+.+... |+++.+.. .|-|-.- ...+|.++.+. ..++..++-.
T Consensus 5 vlSGi-qPTG~lHLGNylGaik~--~v~lq~q~--~~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA 70 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGAIRP--AIAASRQP--GVESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLA 70 (431)
T ss_pred EEEEe-cCCCcchHHHHHHHHHH--HHHHHHhC--CCcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHH
Confidence 44444 68899999998887542 23344456 88865443 3444221 12456655544 3447778889
Q ss_pred cCcccC---CCCCCCCHHHHHHHHHHHHHH
Q psy4049 88 YDIEYT---HYVRTTSEHHFRTVNTVWTKL 114 (528)
Q Consensus 88 l~i~~d---~~~~t~~~~~~~~~~~~~~~L 114 (528)
.|++++ .|.++.-++|. ...|++.-+
T Consensus 71 ~GlDPek~~if~QSdvpeh~-EL~wiL~~i 99 (431)
T PRK12284 71 AGLDPERVTFYRQSDIPEIP-ELTWLLTCV 99 (431)
T ss_pred hCCCccceEEEECCcchhHH-HHHHHHHhh
Confidence 999987 34444444443 334444433
No 117
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=97.88 E-value=0.00012 Score=62.05 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhc
Q psy4049 375 LGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDT 454 (528)
Q Consensus 375 l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~ 454 (528)
+++++.|+.++..+.............. ....+.++.++..+..++..+..++++++++.++.++.+++..+|+||+.
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~--~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~ 78 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDF--LLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDN 78 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHH--HS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhh--hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888775543322111111110 01256789999999999999999999999999999999999999999998
Q ss_pred cCcccccccCc-H-HHHHHHHHHHHHHHHHHHHcccc
Q psy4049 455 TKPWTLRKENK-I-EELNLVLGVTFEVLRICGIGLQP 489 (528)
Q Consensus 455 ~k~~~l~~~~~-~-~~~~~~~~~l~~~l~~l~~ll~P 489 (528)
.+. +..++. . ..+...+..+..+++.++.+|+-
T Consensus 79 ~~I--~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi 113 (119)
T PF05746_consen 79 VRI--LDEDEEIRKNNRLALLKAVRQVLKNGLDLLGI 113 (119)
T ss_dssp S-S--TTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 763 343333 3 55677777777777777777653
No 118
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.85 E-value=0.00013 Score=73.06 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=43.1
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
+.+|.++. -|+|.+||||..+.+.. +++... |++|.+.. .|.|-.-. ..+.++..+ ......+..+
T Consensus 2 ~~~v~~G~-~PTG~~HlG~~l~~~~~----~~~~q~--~~~~~i~I-aD~ha~t~-----~~~~~~~~~-~~~~~~~~~~ 67 (328)
T TIGR00233 2 KFRVLTGI-QPSGKMHLGHYLGAIQT----KWLQQF--GVELFICI-ADLHAITV-----KDNTDPDAL-RKAREELAAD 67 (328)
T ss_pred CCEEEEee-CCCcHhHHHHHHHHHHH----HHHHhC--CCCEEEEe-ecchhhcC-----CCCCCHHHH-HHHHHHHHHH
Confidence 44555555 78899999998776432 233356 88875554 34442110 011233333 3444555667
Q ss_pred HhhcCcccC
Q psy4049 85 FKTYDIEYT 93 (528)
Q Consensus 85 ~~~l~i~~d 93 (528)
+-++|++++
T Consensus 68 ~lA~GlDp~ 76 (328)
T TIGR00233 68 ILAVGLDPK 76 (328)
T ss_pred HHHhCcChh
Confidence 778999987
No 119
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.71 E-value=0.00024 Score=71.22 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=41.7
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCC--cccccC-CCccCcchhhhhcCchHHHHHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGV--KMSKSV-GNVVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~--KmSkS~-gn~i~~~~~~~~~~~d~lR~~~~ 347 (528)
.+++.+.|.||.. |..+---+...++...|.. +.|-++ .++|. |||||. ||.|.+.| +++.+|-=+.
T Consensus 168 ~ad~vpvG~DQ~~-h~~l~Rdia~~~n~~~p~~-l~~~~l~~L~g~~~KMSKS~p~~~I~L~D-----~~~~I~~KI~ 238 (329)
T PRK08560 168 DVDIAVGGMDQRK-IHMLAREVLPKLGYKKPVC-IHTPLLTGLDGGGIKMSKSKPGSAIFVHD-----SPEEIRRKIK 238 (329)
T ss_pred CCCEEEechhHHH-HHHHHHHhhHhcCCCCceE-EEcCccCCCCCCCCCCcCCCCCCeecccC-----CHHHHHHHHH
Confidence 5679999999975 3333222223345544443 335555 57776 999999 99999876 4455554444
No 120
>PLN02486 aminoacyl-tRNA ligase
Probab=97.71 E-value=0.00052 Score=69.72 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCcEEEECCCCCCCC-CChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNA-SPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG-~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++++|.++. -|+| .+||||+ |....++.+++.. |..+... -+|+ +....+ +.+.++. .++..+.
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHl---v~~~~~~~lQ~~~--~~~~~I~-iaD~-----e~~~~~-~~~~e~i-~~~~~en 136 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHL---IPFMFTKYLQDAF--KVPLVIQ-LTDD-----EKFLWK-NLSVEES-QRLAREN 136 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHH---HHHHHHHHHHHhC--CCeEEEE-ecCH-----HHHhhc-CCCHHHH-HHHHHHH
Confidence 5678887776 7888 5999994 4555566555565 6555544 4454 222222 4565544 4445556
Q ss_pred HHHHhhcCcccC
Q psy4049 82 KLMFKTYDIEYT 93 (528)
Q Consensus 82 ~~~~~~l~i~~d 93 (528)
.+++.++|++++
T Consensus 137 ~~~iiA~G~dp~ 148 (383)
T PLN02486 137 AKDIIACGFDVE 148 (383)
T ss_pred HHHHHHhCCCCc
Confidence 667777998886
No 121
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.62 E-value=0.00054 Score=67.14 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=41.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.+||||+.+++.. .++++.. |+++.+..+ |.|..- ....+++ -...+...+..++.++|++++
T Consensus 7 ~PTG~lHLG~~~~al~~---~~~lQ~a--g~~~~~~Ia-D~ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~dp~ 73 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF---WVWLQEA--GYELFFFIA-DLHALT------VKQLDPE-ELRQNTRENAKDYLACGLDPE 73 (280)
T ss_pred CCCchhhHHHHHHHHHH---HHHHHhC--CCCEEEEec-chHHHh------CCCCCHH-HHHHHHHHHHHHHHHcCCCcc
Confidence 67899999999885432 2333455 777765543 444321 0112444 455566677888888999875
No 122
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00033 Score=71.11 Aligned_cols=53 Identities=25% Similarity=0.167 Sum_probs=32.8
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEee-ee-eeCCCcccccCCCccC
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHS-HW-TVDGVKMSKSVGNVVD 329 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg-~~-~~~g~KmSkS~gn~i~ 329 (528)
..|++++|.||-+.|..-- -+....|.+ +.+-+|. ++ ..+|.|||||.||.++
T Consensus 180 ~~dlq~GG~DQ~~ni~~gr-dl~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGR-DLIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred ccchhcCChHHHHHHHHHH-HHHHHhCCC--CeEEEEeccccCCCCCcccccCCCceE
Confidence 4579999999976332221 122335553 3334443 33 5899999999999544
No 123
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.55 E-value=0.0005 Score=69.95 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=45.0
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
++..|..+. -|||.+|||| +.+..--+.++ ... |++|.+..+ |-|..- -.+.|.+++++ ......+..
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g~i~~~~~~~l-q~~--G~~v~~~Ia-D~hA~~----~~~~g~~l~~i-~~~~~~~~~ 132 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--GILKAINVNKL-TKA--GCVFVFWVA-DWFALL----NNKMGGDLEKI-RKVGEYFIE 132 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--hHhHhHHHHHH-HhC--CCeEEEEEc-cceeec----CCCCCCCHHHH-HHHHHHHHH
Confidence 444444444 6888999999 33333333444 455 888876654 222111 01234455544 445566777
Q ss_pred HHhhcCcccC
Q psy4049 84 MFKTYDIEYT 93 (528)
Q Consensus 84 ~~~~l~i~~d 93 (528)
++..+|++++
T Consensus 133 ~~~A~GlDp~ 142 (383)
T PTZ00126 133 VWKAAGMDMD 142 (383)
T ss_pred HHHHhCCCcc
Confidence 8899999886
No 124
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=97.08 E-value=0.004 Score=52.88 Aligned_cols=80 Identities=15% Similarity=0.033 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC-c-HHHHHHHHHHHHHHHHHHHH
Q psy4049 408 EPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN-K-IEELNLVLGVTFEVLRICGI 485 (528)
Q Consensus 408 ~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~-~-~~~~~~~~~~l~~~l~~l~~ 485 (528)
.+.++.++..+..+.+.+..++.+.+++.++.++.++...+|.|++..+. +..++ . +..+...+..+..++..++.
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~v~V--~~~~~~~~~~~RL~Ll~~~~~~l~~~~~ 112 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCRV--LGEENPELRAARLALLKAVRQVLANGLR 112 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHccCcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999998753 33332 1 45567777777777777777
Q ss_pred cccc
Q psy4049 486 GLQP 489 (528)
Q Consensus 486 ll~P 489 (528)
+++.
T Consensus 113 llgi 116 (122)
T smart00836 113 LLGI 116 (122)
T ss_pred HcCC
Confidence 7654
No 125
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=96.73 E-value=0.0017 Score=57.81 Aligned_cols=97 Identities=9% Similarity=0.101 Sum_probs=65.7
Q ss_pred HHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccc---------
Q psy4049 420 TLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQP--------- 489 (528)
Q Consensus 420 ~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P--------- 489 (528)
.+...+.++| ++||++.|+..|+++++.+|.+++.. . . .+......+..++.+|+++-.+
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~~-~--------~-~~~~~~~~l~~~~~vLGl~~~~~~~~~~~~~ 102 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKKED-I--------E-KAAALAALLKALGGVLGLLQQDPEAFLQGGT 102 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhccc-h--------H-HHHHHHHHHHHHHhccCCCCCCHHHHHhccc
Confidence 3446677777 58999999999999999999887531 1 1 1222333333444444542111
Q ss_pred ----cchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 490 ----IVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 490 ----~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
..+...+.+.+.+..++..++|..+|.||++|.+..|
T Consensus 103 ~~~~~~~~~v~~Ll~~R~~aR~~Kdf~~AD~IRd~L~~~Gi 143 (156)
T cd07963 103 GEGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGI 143 (156)
T ss_pred cccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCc
Confidence 1133467788888888889999999999999988765
No 126
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.72 E-value=0.0075 Score=61.60 Aligned_cols=55 Identities=24% Similarity=0.070 Sum_probs=31.2
Q ss_pred CccceEeeecccchhhhHHHHHHhh--cCCCCCcEEEEeeee-eeCCCcccccCCCccCcch
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIA--AGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMS 332 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~--~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~ 332 (528)
-.+++++|.||.. |-. .+...+ .+...... ...-++ ..+|.|||||.||.|+..+
T Consensus 177 ~~di~~gG~DQ~~-ni~--~g~dLar~~~~~~~~~-~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVDLQIGGSDQWG-NIR--KGRDLIRRNLPSLGFG-LTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCCeeEecchhHH-HHH--HHHHHHHHhcCCCcee-eceeeecCCCCCCccCCCCCcccCCc
Confidence 3569999999964 111 122222 22211111 112222 3578999999999998754
No 127
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.53 E-value=0.018 Score=56.23 Aligned_cols=70 Identities=21% Similarity=0.110 Sum_probs=43.3
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
..+++++|.||.. |..+---+..-++...+. .+.|.++ .++|+|||||.+|.++ ..+. =+|+.++-.+.+
T Consensus 151 ~~~l~~~G~DQ~~-~i~~~rd~a~r~~~~~~~-~l~~~ll~~l~G~KMSKS~~~~~~-i~l~--dsp~~i~~Ki~~ 221 (269)
T cd00805 151 DVDLQLGGSDQRG-NITLGRDLIRKLGYKKVV-GLTTPLLTGLDGGKMSKSEGNAIW-DPVL--DSPYDVYQKIRN 221 (269)
T ss_pred hCCeeEecHHHHH-HHHHHHHHHHHhCCCCcE-EEeeccccCCCCCcccCCCCCccc-ccCC--CCHHHHHHHHHc
Confidence 3479999999974 333322222334544332 3445555 5899999999999986 3333 366666666653
No 128
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=94.95 E-value=0.016 Score=57.41 Aligned_cols=67 Identities=21% Similarity=0.092 Sum_probs=39.0
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCC----CCcEEEEeeee-eeCCC-cccccCCC-ccCcchhhhhcCchHHHHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLE----PPKSFLVHSHW-TVDGV-KMSKSVGN-VVDPMSKLSDFTSCGLRYFL 346 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~----~~~~~~~hg~~-~~~g~-KmSkS~gn-~i~~~~~~~~~~~d~lR~~~ 346 (528)
..+++++|.||.. |..+---+...++.. .|.. +++-++ .++|. |||||.+| .|++.| +++.+|--+
T Consensus 149 ~~~~~~~G~DQ~~-~~~l~rd~a~k~~~~~~~~~p~~-l~~~~l~~l~G~~KMSKS~~ns~I~L~d-----~~~~i~~Ki 221 (292)
T PF00579_consen 149 KADLVPGGIDQRG-HIELARDLARKFNYKEIFPKPAG-LTSPLLPGLDGQKKMSKSDPNSAIFLDD-----SPEEIRKKI 221 (292)
T ss_dssp THSEEEEEGGGHH-HHHHHHHHHHHHTHHSTSSS-EE-EEETCBBSTTSSSBTTTTTTGGS-BTTT-----THHHHHHHH
T ss_pred ccccccccchHHH-HHHHHHHHHhhhcccccccCchh-eeeccccccCCccccCccCCccEEEEec-----cchhHHHHH
Confidence 4569999999975 222211122234443 4443 334455 57888 99999999 887766 344444444
Q ss_pred H
Q psy4049 347 L 347 (528)
Q Consensus 347 ~ 347 (528)
.
T Consensus 222 ~ 222 (292)
T PF00579_consen 222 K 222 (292)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=93.65 E-value=0.21 Score=36.82 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.0
Q ss_pred HHHHH-hcccHHHHHHHHHHHHHHHhH
Q psy4049 425 VKLHY-SEFNFYKGVDSIILVLHLANK 450 (528)
Q Consensus 425 v~~~~-e~~~~~~~~~~l~~~~~~~n~ 450 (528)
+.++| +|||++.|+..|+++++.+|+
T Consensus 2 F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 2 FIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 45666 589999999999999999999
No 130
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.89 E-value=0.11 Score=52.13 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=39.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|+|.+||||..+.+.. .+++... |. | +++=.|.|.. + . ...++.++.+ +..+...++-.+|++++
T Consensus 10 ~PTG~~HLGn~l~~~~~---~~~lQ~~--~~-~-~i~IaD~ha~-~-~----~~~~~~~i~~-~~~~~~~~~lA~G~dp~ 75 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKN---RVALQNE--HE-Q-FVLIADQQAL-T-D----NAKNPEKIRR-NILEVALDYLAVGIDPA 75 (333)
T ss_pred CCCCcchHHHHHHHHHH---HHHHHhC--CC-E-EEEEccchhH-h-C----CCCCHHHHHH-HHHHHHHHHHHhCcChh
Confidence 45799999998875432 2234445 64 4 4555677722 1 1 1345555544 44556677788999887
No 131
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.62 E-value=0.12 Score=52.60 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|+|.+||||..+.+. .+..+.. |+++ +++=.|.|-.- -...++.++. .+...+..++-.+|++++
T Consensus 10 qPSG~~HLGnylG~ik-----~wv~lq~-~~~~-~~~IADlHAlt------~~~~d~~~ir-~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 10 RPTGRLHLGHYHGVLK-----NWVKLQH-EYEC-FFFVADWHALT------THYETPEVIE-KNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred CCCCcchHHHHHHHHH-----HHHHHhc-CCcE-EEEeecHHHHh------CCCCCHHHHH-HHHHHHHHHHHHcCCCcc
Confidence 5789999999988542 4444432 6765 44555655221 0112555444 445567889999999986
Q ss_pred ---CCCCCCCHHH
Q psy4049 94 ---HYVRTTSEHH 103 (528)
Q Consensus 94 ---~~~~t~~~~~ 103 (528)
.|.++.-++|
T Consensus 76 k~~if~QS~v~eh 88 (398)
T PRK12283 76 QATLFIQSKVPEH 88 (398)
T ss_pred ceEEEECCCchHH
Confidence 3444444444
No 132
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=90.42 E-value=0.72 Score=32.80 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHH-hcccHHHHHHHHHHHHHHHhHhhh
Q psy4049 425 VKLHY-SEFNFYKGVDSIILVLHLANKFID 453 (528)
Q Consensus 425 v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~ 453 (528)
+.+++ +||+++.|+..++++++.+|.+++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~ 31 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLL 31 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhh
Confidence 34555 589999999999999999999874
No 133
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.27 E-value=0.2 Score=50.38 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=38.1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.+||||..+.+.. +.+++ . +++|.++. .|.|-.- ...++++ +..+...+..++-.+|++++
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ--~--~~~~~~~I-aD~ha~t-------~~~~~~~-i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQ--D--EYECFFCI-ADLHALT-------VPQDPEE-LRENTRELAADYLACGIDPE 73 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHH--h--cCCeEEEE-ecHHHHh-------CCCCHHH-HHHHHHHHHHHHHeEccChh
Confidence 57789999999887532 33332 2 45665554 2333111 0124443 34445567778888999886
No 134
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.35 E-value=1.8 Score=44.17 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=28.4
Q ss_pred CCCcEEEEe-eee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 302 EPPKSFLVH-SHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 302 ~~~~~~~~h-g~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
+.|..++.. .++ .++|+|||||.+|.|.+.| +++.++--+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 444443333 444 4689999999999998766 66666666554
No 135
>PLN02886 aminoacyl-tRNA ligase
Probab=86.27 E-value=2.8 Score=42.90 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=45.6
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|+|.+||||..+.+. -...+ .. |+++. ++=.|.|-.- ...+++++.+. ...+..++-.+|++++
T Consensus 54 qPSG~lHLGnylGai~--~~v~l--Q~--~~~~~-~~IADlHAlt-------~~~~~~~lr~~-~~~~~a~~lA~GlDP~ 118 (389)
T PLN02886 54 QPTGSIHLGNYLGAIK--NWVAL--QE--TYDTF-FCVVDLHAIT-------LPHDPRELGKA-TRSTAAIYLACGIDPS 118 (389)
T ss_pred CCCCccHHHHHHHHHH--HHHHH--hc--cCCEE-EEEecHHHhh-------CCCCHHHHHHH-HHHHHHHHHHcCcCcc
Confidence 5779999999887652 22222 23 67764 4455655221 13366655444 4457778889999987
Q ss_pred ---CCCCCCCHHHH
Q psy4049 94 ---HYVRTTSEHHF 104 (528)
Q Consensus 94 ---~~~~t~~~~~~ 104 (528)
.|.++.-++|.
T Consensus 119 ks~if~QS~v~e~~ 132 (389)
T PLN02886 119 KASVFVQSHVPAHA 132 (389)
T ss_pred ceEEEEeCCCchhH
Confidence 34455445553
No 136
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=84.00 E-value=1.1 Score=49.31 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=41.2
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHH-HHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRF-VKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~-lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+++.|.++. -|||.+||||. +++ .+..+ +... |++|.+..+ |-|..- ..+.|.+.++... ....+.
T Consensus 31 ~~~rv~sGi-~PTG~lHLGng---~~~-aik~~~~~q~--g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~ 97 (682)
T PTZ00348 31 PLIRCYDGF-EPSGRMHIAQG---IFK-AVNVNKCTQA--GCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLI 97 (682)
T ss_pred CCCEEEEee-CCCCcCeeccH---HHH-HHHHHHHHhC--CCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHH
Confidence 344444444 78899999992 222 22221 2345 888765532 222110 1123334444332 234566
Q ss_pred HHHhhcCcccC
Q psy4049 83 LMFKTYDIEYT 93 (528)
Q Consensus 83 ~~~~~l~i~~d 93 (528)
.++..+|++++
T Consensus 98 ~~~lA~GlDpe 108 (682)
T PTZ00348 98 EVWKAAGMDMD 108 (682)
T ss_pred HHHHHcCCCcc
Confidence 78889999987
No 137
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=82.22 E-value=12 Score=41.40 Aligned_cols=101 Identities=12% Similarity=0.158 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcccCCCCCC-CCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHh
Q psy4049 373 NTLGNLLNRCLSKSINPDNVN-PLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKF 451 (528)
Q Consensus 373 ~~l~n~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y 451 (528)
..+..++.|+..++.+..... ...++.-+ ..+.++.+...+..+...+..++++-++..++..+..+...++.|
T Consensus 569 ~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~-----~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~F 643 (682)
T PRK01233 569 KALAAANKRVSNILKKAEGKVSGEVDPALF-----EEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAF 643 (682)
T ss_pred HHHHHHHHHHHHHHhccccccCCccChhHc-----CCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHH
Confidence 346667788887765432211 11222222 257889999999999888888888889999999999999999999
Q ss_pred hhccCcccccccCc-HHHHHHHHHHHHHHH
Q psy4049 452 IDTTKPWTLRKENK-IEELNLVLGVTFEVL 480 (528)
Q Consensus 452 ~~~~k~~~l~~~~~-~~~~~~~~~~l~~~l 480 (528)
++..- ++..+.. +..+...+..+...+
T Consensus 644 FD~Vm--Vm~~d~~iR~NRL~LL~~i~~~f 671 (682)
T PRK01233 644 FDNVM--VMAEDEALRANRLALLASLRELF 671 (682)
T ss_pred hCCCe--eeCCCHHHHHHHHHHHHHHHHHH
Confidence 99753 2333222 444555555444444
No 138
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=81.84 E-value=2.1 Score=41.71 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=42.2
Q ss_pred CCCC-CChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCc--chHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy4049 14 YVNA-SPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEH--GLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDI 90 (528)
Q Consensus 14 ~~nG-~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~--g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i 90 (528)
-|+| .+||||+.+. -.+.++++ . |++|.+..|=.+. |.+.-...++.+.++++ ...+...+..++..+|.
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~-~--g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQ-A--GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILD 80 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHH-C--CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHc
Confidence 6788 8999998753 35555555 5 8887666552221 22321222233455554 45556667888888887
Q ss_pred c
Q psy4049 91 E 91 (528)
Q Consensus 91 ~ 91 (528)
.
T Consensus 81 ~ 81 (269)
T cd00805 81 F 81 (269)
T ss_pred c
Confidence 5
No 139
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=80.10 E-value=14 Score=40.87 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcccCCCCCCC-CcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHh
Q psy4049 373 NTLGNLLNRCLSKSINPDNVNP-LVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKF 451 (528)
Q Consensus 373 ~~l~n~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y 451 (528)
..+..+++|+..++.+.....+ ..+..-+ ..+.++.+...+..+...+...+.+-++..++..+..+...++.|
T Consensus 579 ~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~-----~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~F 653 (691)
T TIGR00211 579 EALAAANKRVANILKKGNPVLSSEIQANLF-----KEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEF 653 (691)
T ss_pred HHHHHHHHHHHHHHhcccccccCccChhHc-----CCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHH
Confidence 4566777888887654332111 1222222 257788999999998888887787779999999999999999999
Q ss_pred hhccCcccccccCc-HHHHHHHHHHHHHHH
Q psy4049 452 IDTTKPWTLRKENK-IEELNLVLGVTFEVL 480 (528)
Q Consensus 452 ~~~~k~~~l~~~~~-~~~~~~~~~~l~~~l 480 (528)
++..- ++..+.. +..+.+.+..+...+
T Consensus 654 FD~Vm--Vm~~d~~iR~NRL~LL~~i~~lf 681 (691)
T TIGR00211 654 FDSVM--VMADDIELRQNRLNFLWGLRQLF 681 (691)
T ss_pred hCCCE--eeCCCHHHHHHHHHHHHHHHHHH
Confidence 99854 2232222 444555555444443
No 140
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.65 E-value=7 Score=39.39 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=40.3
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCC------CCCcEEEE-e-eee-eeCCC--cccccCC---CccCcchhhhhcCc
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGL------EPPKSFLV-H-SHW-TVDGV--KMSKSVG---NVVDPMSKLSDFTS 339 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~------~~~~~~~~-h-g~~-~~~g~--KmSkS~g---n~i~~~~~~~~~~~ 339 (528)
..|+.+.|.||.. |..+---+...++. +.|..++. | ..+ -++|. |||||.+ |.|.+.| ++
T Consensus 138 ~~divpvG~DQ~~-h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D-----~~ 211 (333)
T PRK00927 138 KADLVPVGEDQKQ-HLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD-----DP 211 (333)
T ss_pred CCCEEeeccchHH-HHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----CH
Confidence 5689999999964 43331112222221 23443332 2 223 46765 9999999 7888766 56
Q ss_pred hHHHHHHHh
Q psy4049 340 CGLRYFLLR 348 (528)
Q Consensus 340 d~lR~~~~~ 348 (528)
+.++--+.+
T Consensus 212 ~~I~~KI~~ 220 (333)
T PRK00927 212 KTIAKKIKK 220 (333)
T ss_pred HHHHHHHHh
Confidence 666655553
No 141
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=78.34 E-value=18 Score=39.51 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcccCCCCCC-CCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhh
Q psy4049 374 TLGNLLNRCLSKSINPDNVN-PLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFI 452 (528)
Q Consensus 374 ~l~n~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~ 452 (528)
.+...++|+..+..+..... ...++.-+ ..+.++.+...+..+...+..+.+.-++..++..|.++..-+..|+
T Consensus 579 ~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf-----~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FF 653 (691)
T COG0751 579 ALAAANKRVSNILAKAEKKLSGTVDPSLF-----EEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFF 653 (691)
T ss_pred HHHHHHHHHHHHHHhcccccCCccChHHh-----cCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHh
Confidence 34466778887765443211 22222222 3578899999999999999999999999999999999988889999
Q ss_pred hccCcccccccCc-HHHHHHHHHHHHHHHH
Q psy4049 453 DTTKPWTLRKENK-IEELNLVLGVTFEVLR 481 (528)
Q Consensus 453 ~~~k~~~l~~~~~-~~~~~~~~~~l~~~l~ 481 (528)
+..- ++..+.. +..+.+.+..+.....
T Consensus 654 d~Vm--Vm~eD~~iR~NRLalL~~l~~~f~ 681 (691)
T COG0751 654 DNVM--VMAEDEALRNNRLALLSKLRELFL 681 (691)
T ss_pred cCce--eeCCCHHHHHHHHHHHHHHHHHHH
Confidence 8753 2222222 4455555555554443
No 142
>KOG2144|consensus
Probab=76.92 E-value=1.5 Score=42.05 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCCCCChhhHHHHH-HHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhhc
Q psy4049 14 YVNASPHIGHLYTA-LLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLET----IDFCNKISDQYKLMFKTY 88 (528)
Q Consensus 14 ~~nG~lHiGH~~~~-v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~----~~~~~~~~~~~~~~~~~l 88 (528)
-|+|.+|+|-+-.. =++|++. . |.+|..... |-|+- ...-+-| ..-+.+|.+.++..+..+
T Consensus 42 aptGrpHiay~vpm~kiadflk----A---GC~VtIl~A-D~hA~------LdNmkap~e~~~~rv~yYe~~Ik~~l~~~ 107 (360)
T KOG2144|consen 42 APTGRPHIAYFVPMMKIADFLK----A---GCEVTILFA-DLHAF------LDNMKAPDELVIRRVGYYEKEIKAALGSI 107 (360)
T ss_pred CCCCCcceeeeeehhHHHHHHh----c---CCeEEEEeh-HHHHH------HhcccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999985443 3466544 3 899976653 32211 0111111 234788899999999999
Q ss_pred CcccC
Q psy4049 89 DIEYT 93 (528)
Q Consensus 89 ~i~~d 93 (528)
|+..+
T Consensus 108 nv~lE 112 (360)
T KOG2144|consen 108 NVPLE 112 (360)
T ss_pred CCcHH
Confidence 99876
No 143
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=76.61 E-value=16 Score=36.77 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCccceEeeecccchhhhHHHHHHhhcC--C--C---CCcEEEEe-eee-eeCC-CcccccCCCccCcchhhhhcCchHH
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAAG--L--E---PPKSFLVH-SHW-TVDG-VKMSKSVGNVVDPMSKLSDFTSCGL 342 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~~--~--~---~~~~~~~h-g~~-~~~g-~KmSkS~gn~i~~~~~~~~~~~d~l 342 (528)
+..++.+.|.||.. |..+---+...++ + + .|..+..| -++ .++| +|||||.+|.|.+.| +++.+
T Consensus 141 ~~~d~vpvG~DQ~~-h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D-----~pe~I 214 (333)
T PRK12282 141 FKATLVPVGDDQLP-MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD-----DADTI 214 (333)
T ss_pred hCCCEEEeccccHH-HHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC-----CHHHH
Confidence 36789999999964 3333111222222 1 1 12222222 233 3566 799999999988766 55555
Q ss_pred HHHHH
Q psy4049 343 RYFLL 347 (528)
Q Consensus 343 R~~~~ 347 (528)
+=-+.
T Consensus 215 ~kKI~ 219 (333)
T PRK12282 215 KKKVM 219 (333)
T ss_pred HHHHH
Confidence 54444
No 144
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=76.48 E-value=2.7 Score=41.53 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=27.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
++++.|.++. -|+|.+||||+-... .+.++++ . |++|.++.|
T Consensus 3 ~~~~~~y~G~-~PTg~lHlG~l~~~~---~~~~lq~-~--g~~~~i~ia 44 (292)
T PF00579_consen 3 NKPFRVYTGI-DPTGDLHLGHLVPIM---KLIWLQK-A--GFKVIILIA 44 (292)
T ss_dssp HSSEEEEEEE-ESSSS-BHHHHHHHH---HHHHHHH-T--TSEEEEEEE
T ss_pred CCCcEEEEeE-CCCCcccchHHHHHH---HHHHHHh-c--CCccceEec
Confidence 3556665555 677899999887653 3334444 6 899887765
No 145
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=74.53 E-value=4.4 Score=35.73 Aligned_cols=86 Identities=15% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCC---CH-HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHH
Q psy4049 33 THRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKL---ET-IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVN 108 (528)
Q Consensus 33 ~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~---~~-~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~ 108 (528)
+||++|+. ||++.+.. +..+..+...+.++|. +. .++..+ . ++|+. -.+..+.+ ..+++.
T Consensus 18 LARwLRll--Gydt~~~~--~~~d~~i~~i~~~e~rIllTRDr~L~~r-------~--k~g~~-~i~i~~~s--~~~Ql~ 81 (165)
T COG1656 18 LARWLRLL--GYDTVYSS--NESDDEIILIAKKEGRILLTRDRELYKR-------A--KLGIK-AILIRSDS--IEEQLA 81 (165)
T ss_pred HHHHHHHc--CCceeeec--cCCcHHHHHHHhcCCeEEEeccHHHHHH-------h--hccCc-eEEEeCCC--HHHHHH
Confidence 79999999 99999997 3333455566666552 11 222222 1 34432 23434444 566777
Q ss_pred HHHHHHhhCCCeeccceeeccccCcCccc
Q psy4049 109 TVWTKLKQRDSIYPNKYKGWYCVSEESFL 137 (528)
Q Consensus 109 ~~~~~L~~~g~iy~~~~~~~~~~~~~~~l 137 (528)
+++..+-.++-+.. ...=||.|+..|
T Consensus 82 e~~~~~~l~~~~~~---e~~RCp~CN~~L 107 (165)
T COG1656 82 EFLARLGLKPRLFP---EFSRCPECNGEL 107 (165)
T ss_pred HHHHHhccchhccc---ccccCcccCCEe
Confidence 77776665552222 133477777665
No 146
>PLN02886 aminoacyl-tRNA ligase
Probab=70.24 E-value=4.7 Score=41.23 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=12.9
Q ss_pred CCccceEeeecccchhhhH
Q psy4049 273 WPPHIQILGKDILKFHGIY 291 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~ 291 (528)
+..++.+.|.||.. |..+
T Consensus 183 ~~a~~VPVG~DQ~q-H~eL 200 (389)
T PLN02886 183 YQADLVPVGEDQKQ-HLEL 200 (389)
T ss_pred cCCCeEEEccchHH-HHHH
Confidence 35679999999964 4443
No 147
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=68.36 E-value=14 Score=40.88 Aligned_cols=57 Identities=26% Similarity=0.182 Sum_probs=32.7
Q ss_pred CCccceEeeecccchhhhHHHHHHh--hcCCCCCcEEEEeeee-eeC-C-CcccccC-CCccCcch
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLI--AAGLEPPKSFLVHSHW-TVD-G-VKMSKSV-GNVVDPMS 332 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~--~~~~~~~~~~~~hg~~-~~~-g-~KmSkS~-gn~i~~~~ 332 (528)
+..|+.+.|.||.. |..+ +.-. .+|..+...+..|.++ -++ | +|||||. +|.|.+.|
T Consensus 174 l~adivpvG~DQ~q-h~eL--aRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRK-VNML--AREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHH-HHHH--HHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 35788999999964 3222 3222 2343221222233444 344 3 6999999 68887755
No 148
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=67.60 E-value=35 Score=39.29 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHh
Q psy4049 372 ANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKF 451 (528)
Q Consensus 372 ~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y 451 (528)
...+..+++|+..++.+.... ..+..-+ ..+.++.+...+..+...+... +-++..++..+..+...++.|
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~--~vd~~Lf-----~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~F 963 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFS--VTDASLL-----LEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAVNTF 963 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCC--ccChhhc-----CCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHH
Confidence 345677788888876543321 1222222 2577888988888887766655 448899999999999999999
Q ss_pred hhccCcccccccCc-HHHHHHHHHHHHHH
Q psy4049 452 IDTTKPWTLRKENK-IEELNLVLGVTFEV 479 (528)
Q Consensus 452 ~~~~k~~~l~~~~~-~~~~~~~~~~l~~~ 479 (528)
++..- ++..+.. +..+.+.+..+...
T Consensus 964 FD~Vm--Vm~eD~~iR~NRLaLL~~i~~l 990 (1000)
T PRK14908 964 FDEVL--VMADDEAIRNARLGLLAAIRDL 990 (1000)
T ss_pred hCCCE--eeCCCHHHHHHHHHHHHHHHHH
Confidence 98853 2333222 44455555444443
No 149
>KOG2713|consensus
Probab=61.27 E-value=45 Score=32.32 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|+|.+|+||..|.+-.=+----.... |-.|+| +-.|.| |.....+|. ...++.-.+-..+-..||++.
T Consensus 21 QPTG~~HLGNYLGai~~Wv~LQ~~~d~--~~~~~f-~vvDlH-------aITvp~dp~-~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 21 QPTGIPHLGNYLGAIKPWVQLQNEYDK--NILVLF-SVVDLH-------AITVPQDPA-ELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred CCCCCchhhhhhhhhhHHHHHHHHhcC--CceEEE-EEeece-------eecCCCChH-HHHHHHHHHHHHHHHhccCcc
Confidence 688999999999975432211111223 444443 234555 223455565 344455556667778899886
Q ss_pred ---CCCCCCCHHHHHHHHHHHHH
Q psy4049 94 ---HYVRTTSEHHFRTVNTVWTK 113 (528)
Q Consensus 94 ---~~~~t~~~~~~~~~~~~~~~ 113 (528)
.|++..-+.|.+. .|++..
T Consensus 90 Ks~lF~QS~Vpqh~el-~WlLss 111 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAEL-SWLLSS 111 (347)
T ss_pred cceeeeeccchHHHHH-HHHHHh
Confidence 5655555555443 344433
No 150
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=55.75 E-value=24 Score=27.29 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=22.5
Q ss_pred HHHHHHHHH-hcccHHHHHHHHHHHHHHH
Q psy4049 421 LHEDVKLHY-SEFNFYKGVDSIILVLHLA 448 (528)
Q Consensus 421 ~~~~v~~~~-e~~~~~~~~~~l~~~~~~~ 448 (528)
+..++.++| +|||++.|+..|+++++.+
T Consensus 29 ~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 29 LVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 445666676 5899999999999999754
No 151
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.71 E-value=26 Score=31.05 Aligned_cols=10 Identities=0% Similarity=0.012 Sum_probs=8.3
Q ss_pred cccCCCCCcE
Q psy4049 170 VSIESNQPVE 179 (528)
Q Consensus 170 ~~~~~g~~~~ 179 (528)
.|+.||.+++
T Consensus 130 ~Cp~Cg~~L~ 139 (158)
T TIGR00373 130 TCPRCGAMLD 139 (158)
T ss_pred cCCCCCCEee
Confidence 4888999886
No 152
>KOG2623|consensus
Probab=49.24 E-value=15 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=24.8
Q ss_pred ECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 9 TTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 9 ~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
|+.-|++ -.||+||+...+ ++.++.|. |+++.-+.|
T Consensus 68 cGfDPTA-~SLHvGNLl~lm---~L~hfqr~---Gh~~ialIG 103 (467)
T KOG2623|consen 68 CGFDPTA-ESLHVGNLLALM---VLIHFQRA---GHRPIALIG 103 (467)
T ss_pred ecCCCcH-HhhhhcchHHHH---HHHHHHHc---CCCceEEec
Confidence 5555665 469999998764 34555554 888877766
No 153
>KOG2145|consensus
Probab=48.66 E-value=20 Score=34.66 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEe-ecCCC
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILT-TGTDE 54 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v-~g~d~ 54 (528)
++++|+.++-=--++.+|+||+-..+ +.+|+... ++|-.| .-+||
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFi----ftKwlQe~---F~vpLVIqlTDD 128 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFI----FTKWLQDV---FDVPLVIQLTDD 128 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHH----HHHHHHHH---hCCceEEEeccc
Confidence 57889866553456899999997764 56788776 566544 44554
No 154
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=45.67 E-value=17 Score=32.66 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.0
Q ss_pred hhCCCeeccceeeccccCcCcccc
Q psy4049 115 KQRDSIYPNKYKGWYCVSEESFLL 138 (528)
Q Consensus 115 ~~~g~iy~~~~~~~~~~~~~~~l~ 138 (528)
.+++-.+.++.+.|||.+|+-.+.
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred CcccceeecccceeehhhCCCccc
Confidence 345667788889999999998764
No 155
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=43.67 E-value=28 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCC
Q psy4049 33 THRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKL 68 (528)
Q Consensus 33 ~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~ 68 (528)
++|+||+. |++|.+..+.+ +..+...|.++|.
T Consensus 12 Lar~LR~l--G~Dt~~~~~~~--D~~il~~A~~e~R 43 (147)
T PF01927_consen 12 LARWLRLL--GYDTLYSRDID--DDEILELAREEGR 43 (147)
T ss_pred HHHHHHHC--CCcEEEeCCCC--hHHHHHHhhhCCe
Confidence 68999999 99999999664 4455666776663
No 156
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=38.35 E-value=45 Score=28.94 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCCCCChhhHHHHH-HHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHH--------HHcCCCHHHHHH
Q psy4049 14 YVNASPHIGHLYTA-LLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAA--------IKHKLETIDFCN 75 (528)
Q Consensus 14 ~~nG~lHiGH~~~~-v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a--------~~~g~~~~~~~~ 75 (528)
-.-|++||||+..+ ..-+-+-+--... |..|.+-++.|.+ +-.++| ..+|.+|++-..
T Consensus 39 ~DFGPlnL~~lyrfc~~l~~~L~~~~~~--~k~iv~yts~d~~--kRaNAA~Lig~y~Vi~l~~spe~A~~ 105 (141)
T PF14671_consen 39 ADFGPLNLAQLYRFCCKLNKKLKSPELK--KKKIVHYTSSDPK--KRANAAFLIGAYAVIYLGMSPEEAYK 105 (141)
T ss_dssp S------HHHHHHHHHHHHHHHH-GGGT--TSEEEEEE-S-HH--HHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred CcCCCccHHHHHHHHHHHHHHHcCHHhc--CCeEEEECCCChh--HHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34599999999986 3344333334456 8999999997763 222222 245677765433
No 157
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=36.93 E-value=31 Score=24.67 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCeeEEeecCC--Ccc-hHHHHHHHHcCCCHHHHHHHH
Q psy4049 28 LLADATHRFVKLVNPRISSILTTGTD--EHG-LKIQNAAIKHKLETIDFCNKI 77 (528)
Q Consensus 28 v~~D~~~R~lr~~~~G~~v~~v~g~d--~~g-~~i~~~a~~~g~~~~~~~~~~ 77 (528)
.++|+++.+-+.. +|..-.|+| ++| .++..++++.|+++.++.+.-
T Consensus 4 tVgeiv~~~p~~a----~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 4 TVGEIVAEDPRAA----RVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred CHHHHHHHChHHH----HHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHH
Confidence 3566666655555 555556666 566 678888999999999887654
No 158
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=35.80 E-value=2.8e+02 Score=23.72 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=64.8
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcc------hHHHHHHHHcCCCHHHH------
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHG------LKIQNAAIKHKLETIDF------ 73 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g------~~i~~~a~~~g~~~~~~------ 73 (528)
++|+++..+++|.+ ..+ .-..+.-.++++.. ....+.++|-..++ ......+.+.|.++..+
T Consensus 3 IvVLG~~~~~~~~~--~~~--~~R~~~a~~l~~~~--~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s 76 (150)
T cd06259 3 IVVLGGGVNGDGPS--PIL--AERLDAAAELYRAG--PAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRS 76 (150)
T ss_pred EEEeCCccCCCCCC--hHH--HHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCC
Confidence 67888888888877 222 23345555566665 56777778776554 22333456677655432
Q ss_pred --HHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhh
Q psy4049 74 --CNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQ 116 (528)
Q Consensus 74 --~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~ 116 (528)
...+.....+.++..++ ....-.+++.|...+..+|+++.-
T Consensus 77 ~~T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 77 TNTYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred CCHHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCC
Confidence 34455556666777776 323235788899999999998664
No 159
>KOG2623|consensus
Probab=31.80 E-value=95 Score=31.61 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=31.9
Q ss_pred CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEee----ee-eeCCCcccccCCCccCcch
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHS----HW-TVDGVKMSKSVGNVVDPMS 332 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg----~~-~~~g~KmSkS~gn~i~~~~ 332 (528)
+...++++|.||...=..-.-.+-...+.. -.+.| .+ .-.|.|+-||.||+||++-
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~~~----~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMPIQ----AFVFGLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhcccc----cceeeeeeeeEecCcchhhccCCCceEEecC
Confidence 567899999999861000000111111111 12223 22 3579999999999999854
No 160
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=31.80 E-value=3.1e+02 Score=23.06 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhcCcccCCC----C-CCCCHHHHHHHHHHHHHHhhCC
Q psy4049 71 IDFCNKISDQYKLMFKTYDIEYTHY----V-RTTSEHHFRTVNTVWTKLKQRD 118 (528)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~i~~d~~----~-~t~~~~~~~~~~~~~~~L~~~g 118 (528)
..++.+-.+..++.|+.+||+.+++ . .+....+.+.+.++.+++.+-|
T Consensus 72 n~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 72 NYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHHcC
Confidence 5678888899999999999998833 1 2234456666667777666543
No 161
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=30.55 E-value=45 Score=27.02 Aligned_cols=10 Identities=40% Similarity=0.478 Sum_probs=8.8
Q ss_pred CCChhhHHHH
Q psy4049 17 ASPHIGHLYT 26 (528)
Q Consensus 17 G~lHiGH~~~ 26 (528)
|++|+||+..
T Consensus 9 dp~H~GH~~l 18 (105)
T cd02156 9 GYLHIGHAKL 18 (105)
T ss_pred CCCCHHHHHH
Confidence 7899999975
No 162
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.38 E-value=98 Score=28.18 Aligned_cols=88 Identities=10% Similarity=0.064 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhhcCcccCCCCCCCCHHHHHH
Q psy4049 28 LLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM-FKTYDIEYTHYVRTTSEHHFRT 106 (528)
Q Consensus 28 v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~-~~~l~i~~d~~~~t~~~~~~~~ 106 (528)
|..|++...++.+ ||+|.+-.|+=+...|+... .+++..-++.+++. ++.++=..-...-.-+..|...
T Consensus 89 Vp~~vl~daLk~~--GyrVevr~~~l~T~ap~~ev--------~E~vreLse~~~E~~~~~lt~~vrklVv~~S~~~~~~ 158 (204)
T COG3286 89 VPPDVLIDALKLL--GYRVEVRGGELKTNAPWSEV--------VELVRELSEVYREARFQPLTRQVRKLVVAVSIVYGLD 158 (204)
T ss_pred CCHHHHHHHHHhC--CceEEeeCceeecCCCHHHH--------HHHHHHHHHHHHHHHhccccchhhhhhhhhhhHhCCC
Confidence 7789999999999 99999998874443333322 22233333333221 1111100001111112223344
Q ss_pred HHHHHHHHhhCCCeeccce
Q psy4049 107 VNTVWTKLKQRDSIYPNKY 125 (528)
Q Consensus 107 ~~~~~~~L~~~g~iy~~~~ 125 (528)
..++...+.+.|++..++.
T Consensus 159 ~dd~~eeave~Gll~e~E~ 177 (204)
T COG3286 159 PDDAAEEAVELGLLEEGED 177 (204)
T ss_pred HHHHHHHHHHhhhhhccch
Confidence 5567788888999877664
No 163
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=24.36 E-value=36 Score=23.45 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=11.7
Q ss_pred eccccCcC--cccccccc
Q psy4049 127 GWYCVSEE--SFLLEHQI 142 (528)
Q Consensus 127 ~~~~~~~~--~~l~~~~v 142 (528)
.-+||+|+ +|++++.-
T Consensus 19 ~~~CPrCG~gvfmA~H~d 36 (51)
T COG1998 19 NRFCPRCGPGVFMADHKD 36 (51)
T ss_pred cccCCCCCCcchhhhcCc
Confidence 35799998 78877653
No 164
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.40 E-value=2.3e+02 Score=24.62 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCH
Q psy4049 22 GHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSE 101 (528)
Q Consensus 22 GH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~ 101 (528)
||-++ +.+++|.++.. |++|.+..... +|.|.++. +++++-.-.+|+- .+.
T Consensus 24 gHd~g---akvia~~l~d~--GfeVi~~g~~~---------------tp~e~v~a---A~~~dv~vIgvSs------l~g 74 (143)
T COG2185 24 GHDRG---AKVIARALADA--GFEVINLGLFQ---------------TPEEAVRA---AVEEDVDVIGVSS------LDG 74 (143)
T ss_pred ccccc---hHHHHHHHHhC--CceEEecCCcC---------------CHHHHHHH---HHhcCCCEEEEEe------ccc
Confidence 56655 46778888888 88887765443 44444433 2344444444432 345
Q ss_pred HHHHHHHHHHHHHhhCCC
Q psy4049 102 HHFRTVNTVWTKLKQRDS 119 (528)
Q Consensus 102 ~~~~~~~~~~~~L~~~g~ 119 (528)
.|...+..+.+.|.++|.
T Consensus 75 ~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 75 GHLTLVPGLVEALREAGV 92 (143)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 588888888888888874
No 165
>COG4720 Predicted membrane protein [Function unknown]
Probab=21.52 E-value=76 Score=28.44 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=11.9
Q ss_pred EEECCCCCCCCCChhhHHHH
Q psy4049 7 FITTPIFYVNASPHIGHLYT 26 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~ 26 (528)
++..|+|.|||.+|+|.+.=
T Consensus 25 ~i~IPtp~~~~~i~L~da~i 44 (177)
T COG4720 25 LIRIPTPIPNGFLTLGDAGI 44 (177)
T ss_pred eeEecCCCCCCeeeHHHHHH
Confidence 44556666666666666543
No 166
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.06 E-value=1.4e+02 Score=27.05 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=8.7
Q ss_pred cccCCCCCcEE
Q psy4049 170 VSIESNQPVEW 180 (528)
Q Consensus 170 ~~~~~g~~~~~ 180 (528)
.|+.||..++.
T Consensus 134 ~Cp~Cg~~L~~ 144 (176)
T COG1675 134 TCPKCGEDLEE 144 (176)
T ss_pred CCCCCCchhhh
Confidence 48899998863
No 167
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=20.30 E-value=1.6e+02 Score=22.81 Aligned_cols=75 Identities=8% Similarity=0.082 Sum_probs=45.7
Q ss_pred cccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCc-cc---ccCCCCCcEEeeeceeeeeccccHHHHHHHHHhC
Q psy4049 129 YCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQ-YV---SIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKN 204 (528)
Q Consensus 129 ~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~-~~---~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 204 (528)
+|-+|+..+.....-|. +.+|... .. |-..|.-+. -+.+++.++....++...
T Consensus 2 ~CQSCGMPl~~~~~~Gt----------------e~dGs~s~~YC~yCy~~G~Ft~-------~~t~eemie~~~~~~~~~ 58 (81)
T PF12674_consen 2 FCQSCGMPLSKDEDFGT----------------EADGSKSEDYCSYCYQNGEFTQ-------DITMEEMIEFCVPFMDEF 58 (81)
T ss_pred cCCcCcCccCCcccccc----------------ccCCCCchhHHHHHhcCCceee-------cCCHHHHHHHHHHHHHHh
Confidence 68888888877665554 3333321 12 434444321 245667777777777655
Q ss_pred CCcccchhhHHHHHHHHhccCCCc
Q psy4049 205 EDVVKPKKFYNQLRNMCSEIENDI 228 (528)
Q Consensus 205 ~~~~~p~~~~~~~~~~l~~~~~dw 228 (528)
. .+.|..++..+...|.. |+-|
T Consensus 59 ~-~~~~~~a~~~~~~~lp~-LkRW 80 (81)
T PF12674_consen 59 N-GMTPEEARKMMPRYLPT-LKRW 80 (81)
T ss_pred C-CCCHHHHHHHHHHHccC-Cccc
Confidence 4 26788888888888876 6655
No 168
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.13 E-value=1.5e+02 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcc
Q psy4049 100 SEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESF 136 (528)
Q Consensus 100 ~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~ 136 (528)
+..|.......+..+. +|. +|.|+.|+-.
T Consensus 115 Ek~H~~~~~~~Le~~~-~~~-------~~vC~vCGy~ 143 (166)
T COG1592 115 EKRHAEMFRGLLERLE-EGK-------VWVCPVCGYT 143 (166)
T ss_pred HHHHHHHHHHHHHhhh-cCC-------EEEcCCCCCc
Confidence 4456555555555543 333 8889999743
Done!