Query psy4049
Match_columns 528
No_of_seqs 185 out of 1529
Neff 9.0
Searched_HMMs 29240
Date Sat Aug 17 00:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1f_A Methionyl-tRNA syntheta 100.0 9.5E-98 3E-102 799.5 37.3 480 2-507 7-502 (542)
2 3kfl_A Methionyl-tRNA syntheta 100.0 3.4E-96 1E-100 785.5 38.5 485 2-514 24-526 (564)
3 4dlp_A Aminoacyl-tRNA syntheta 100.0 9.7E-95 3.3E-99 772.5 40.1 479 3-514 24-508 (536)
4 1rqg_A Methionyl-tRNA syntheta 100.0 1.1E-92 3.8E-97 775.3 43.5 493 4-514 2-530 (722)
5 3h99_A Methionyl-tRNA syntheta 100.0 1E-92 3.5E-97 760.8 36.3 492 2-515 16-529 (560)
6 2x1l_A Methionyl-tRNA syntheta 100.0 9.6E-91 3.3E-95 741.3 35.3 480 3-514 11-501 (524)
7 2d5b_A Methionyl-tRNA syntheta 100.0 1.1E-89 3.9E-94 729.9 32.6 469 3-514 2-478 (500)
8 2csx_A Methionyl-tRNA syntheta 100.0 4.6E-89 1.6E-93 723.8 30.7 468 3-513 4-475 (497)
9 1gax_A Valrs, valyl-tRNA synth 100.0 1.4E-84 4.9E-89 718.9 37.2 495 2-521 32-715 (862)
10 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.8E-82 6E-87 708.3 37.9 501 3-521 47-794 (917)
11 1ile_A Ilers, isoleucyl-tRNA s 100.0 2.2E-82 7.4E-87 706.3 30.3 503 2-522 36-799 (821)
12 4arc_A Leucine--tRNA ligase; l 100.0 1.9E-74 6.4E-79 635.5 40.8 457 2-515 51-811 (880)
13 1wz2_A Leucyl-tRNA synthetase; 100.0 1.2E-74 4E-79 651.9 38.9 486 4-522 34-833 (967)
14 2v0c_A Aminoacyl-tRNA syntheta 100.0 5.5E-73 1.9E-77 629.3 40.5 456 3-515 32-808 (878)
15 1wkb_A Leucyl-tRNA synthetase; 100.0 1.5E-72 5.3E-77 628.2 40.0 468 3-503 33-810 (810)
16 1li5_A Cysrs, cysteinyl-tRNA s 100.0 6.8E-56 2.3E-60 460.5 26.9 405 4-526 23-447 (461)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 6.8E-56 2.3E-60 456.0 24.1 415 4-527 43-488 (501)
18 3tqo_A Cysteinyl-tRNA syntheta 100.0 2E-54 6.9E-59 443.7 29.4 404 5-526 27-448 (462)
19 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.2E-51 4.2E-56 424.5 26.0 331 4-450 40-390 (414)
20 2zue_A Arginyl-tRNA synthetase 100.0 2E-43 6.9E-48 379.3 20.8 403 3-492 118-626 (629)
21 1iq0_A Arginyl-tRNA synthetase 100.0 3E-42 1E-46 369.4 24.8 397 5-492 104-589 (592)
22 3fnr_A Arginyl-tRNA synthetase 100.0 5.9E-39 2E-43 331.2 24.1 372 3-494 29-453 (464)
23 1f7u_A Arginyl-tRNA synthetase 100.0 4.8E-35 1.6E-39 311.9 22.8 371 3-492 142-604 (607)
24 1irx_A Lysyl-tRNA synthetase; 100.0 2E-33 6.8E-38 297.7 9.8 269 5-367 20-327 (523)
25 3aii_A Glutamyl-tRNA synthetas 99.8 7.4E-19 2.5E-23 181.9 13.0 271 7-368 97-394 (553)
26 1qtq_A GLNRS, protein (glutami 99.7 1.1E-17 3.8E-22 173.2 13.3 272 7-366 27-330 (553)
27 2hz7_A Glutaminyl-tRNA synthet 99.7 1.9E-16 6.7E-21 170.8 11.1 275 6-366 66-370 (851)
28 2o5r_A Glutamyl-tRNA synthetas 99.6 1.3E-15 4.6E-20 157.8 14.2 261 6-350 13-293 (481)
29 2cfo_A Glutamyl-tRNA synthetas 99.6 1.2E-15 4.2E-20 158.1 13.9 94 7-122 2-96 (492)
30 3al0_C Glutamyl-tRNA(Gln) amid 99.6 1.2E-14 4.2E-19 153.7 12.3 245 7-350 130-390 (592)
31 1nzj_A Hypothetical protein YA 99.5 8.1E-15 2.8E-19 142.5 8.1 94 7-122 6-100 (298)
32 3afh_A Glutamyl-tRNA synthetas 99.5 6.1E-14 2.1E-18 145.0 14.8 244 7-350 26-286 (488)
33 1j09_A Glutamyl-tRNA synthetas 99.5 1.6E-13 5.5E-18 141.4 12.5 263 7-364 2-290 (468)
34 4g6z_A Glutamate-tRNA ligase; 99.4 9.8E-13 3.4E-17 135.2 16.1 95 7-123 26-121 (490)
35 2ja2_A Glutamyl-tRNA synthetas 99.4 5.2E-13 1.8E-17 138.1 12.6 95 7-123 7-110 (498)
36 4gri_A Glutamate--tRNA ligase; 99.2 5.7E-11 1.9E-15 124.5 11.0 97 7-123 25-128 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.6 5.9E-07 2E-11 88.7 15.1 69 274-349 170-239 (323)
38 2dlc_X Tyrosyl-tRNA synthetase 98.3 3.6E-06 1.2E-10 85.1 10.9 68 274-348 182-252 (394)
39 1n3l_A Tyrosyl-tRNA synthetase 98.2 5E-06 1.7E-10 83.4 10.5 68 274-348 178-247 (372)
40 2g36_A Tryptophanyl-tRNA synth 98.2 4.2E-06 1.4E-10 82.8 8.9 71 273-349 152-230 (340)
41 3vgj_A Tyrosyl-tRNA synthetase 98.0 1E-05 3.4E-10 80.9 8.7 69 274-348 200-272 (373)
42 3jxe_A Tryptophanyl-tRNA synth 98.0 4E-05 1.4E-09 76.8 11.6 78 3-93 71-148 (392)
43 2el7_A Tryptophanyl-tRNA synth 97.9 1.2E-05 4.3E-10 79.3 6.7 70 274-349 141-220 (337)
44 3hzr_A Tryptophanyl-tRNA synth 97.8 0.00022 7.4E-09 71.4 13.1 77 3-93 80-156 (386)
45 2cya_A Tyrosyl-tRNA synthetase 97.8 7.8E-05 2.7E-09 74.4 9.9 68 274-348 177-263 (364)
46 3p0j_A Tyrosyl-tRNA synthetase 97.7 0.00022 7.5E-09 76.8 12.8 78 4-93 39-116 (690)
47 2zp1_A Tyrosyl-tRNA synthetase 97.7 6.4E-05 2.2E-09 73.6 7.5 64 274-348 163-228 (314)
48 1r6u_A Tryptophanyl-tRNA synth 97.6 0.00054 1.8E-08 69.6 12.4 66 275-347 257-326 (437)
49 1r6t_A Tryptophanyl-tRNA synth 97.4 0.00095 3.3E-08 68.8 12.6 66 275-347 304-373 (477)
50 3hv0_A Tryptophanyl-tRNA synth 97.4 0.00078 2.7E-08 67.6 10.8 78 3-93 72-150 (393)
51 2cyc_A Tyrosyl-tRNA synthetase 97.3 0.00051 1.7E-08 68.8 8.8 69 274-348 180-276 (375)
52 2j5b_A Tyrosyl-tRNA synthetase 97.3 0.00028 9.5E-09 70.0 6.3 68 274-348 186-257 (348)
53 2yxn_A Tyrosyl-tRNA synthetase 96.6 0.0012 4.1E-08 64.7 3.7 71 274-348 191-262 (322)
54 2pid_A Tyrosyl-tRNA synthetase 96.4 0.0028 9.5E-08 62.9 5.3 71 274-348 210-281 (356)
55 1h3f_A Tyrosyl-tRNA synthetase 96.3 0.0045 1.5E-07 62.9 6.2 68 274-348 187-256 (432)
56 2jan_A Tyrosyl-tRNA synthetase 96.1 0.0035 1.2E-07 63.5 4.0 71 274-348 187-259 (432)
57 1jil_A Tyrrs, tyrosyl-tRNA syn 96.0 0.0049 1.7E-07 62.5 4.7 70 274-347 186-257 (420)
58 3tzl_A Tryptophanyl-tRNA synth 96.0 0.0022 7.4E-08 62.8 1.9 69 274-348 139-216 (322)
59 2ts1_A Tyrosyl-tRNA synthetase 96.0 0.0045 1.6E-07 62.6 4.3 71 274-348 185-257 (419)
60 1y42_X Tyrosyl-tRNA synthetase 95.1 0.011 3.7E-07 59.4 3.4 40 307-348 280-320 (392)
61 1yi8_B Tryptophanyl-tRNA synth 94.9 0.012 4.2E-07 58.1 3.3 69 274-348 162-239 (351)
62 2ip1_A Tryptophanyl-tRNA synth 94.8 0.015 5.2E-07 59.0 3.6 57 274-332 249-309 (432)
63 3tze_A Tryptophanyl-tRNA synth 94.8 0.018 6E-07 57.9 3.9 77 3-93 99-176 (406)
64 3i05_A Tryptophanyl-tRNA synth 94.8 0.013 4.4E-07 58.8 2.9 77 3-93 76-153 (395)
65 2yy5_A Tryptophanyl-tRNA synth 94.7 0.013 4.3E-07 58.0 2.5 70 273-348 146-229 (348)
66 1i6k_A TRPRS, tryptophanyl-tRN 94.6 0.016 5.3E-07 56.9 2.9 70 7-93 4-73 (328)
67 3a04_A Tryptophanyl-tRNA synth 94.5 0.061 2.1E-06 53.6 7.0 78 2-93 67-144 (372)
68 3foc_A Tryptophanyl-tRNA synth 91.2 0.69 2.3E-05 46.9 9.1 78 3-93 89-167 (451)
69 3foc_A Tryptophanyl-tRNA synth 91.1 0.11 3.7E-06 52.8 3.1 65 277-348 290-358 (451)
70 3prh_A Tryptophanyl-tRNA synth 90.7 0.29 1E-05 48.7 5.8 74 4-93 30-107 (388)
71 3tzl_A Tryptophanyl-tRNA synth 90.7 0.25 8.6E-06 48.1 5.2 65 14-93 11-75 (322)
72 3i05_A Tryptophanyl-tRNA synth 90.6 0.67 2.3E-05 46.3 8.4 66 275-347 225-293 (395)
73 3n9i_A Tryptophanyl-tRNA synth 87.3 0.21 7.3E-06 49.0 2.0 65 14-93 23-87 (346)
74 1i6k_A TRPRS, tryptophanyl-tRN 87.2 1.2 4E-05 43.4 7.2 70 273-348 136-219 (328)
75 2ip1_A Tryptophanyl-tRNA synth 87.1 1.6 5.5E-05 44.1 8.4 77 4-93 101-178 (432)
76 1yi8_B Tryptophanyl-tRNA synth 87.1 1 3.5E-05 44.3 6.7 66 14-93 30-95 (351)
77 3sz3_A Tryptophanyl-tRNA synth 86.9 0.13 4.4E-06 50.4 0.2 65 14-93 14-78 (341)
78 3prh_A Tryptophanyl-tRNA synth 86.5 0.19 6.3E-06 50.1 1.1 70 273-348 170-253 (388)
79 3tze_A Tryptophanyl-tRNA synth 86.1 1.6 5.5E-05 43.7 7.6 57 274-332 243-303 (406)
80 3n9i_A Tryptophanyl-tRNA synth 85.6 1.1 3.8E-05 43.9 6.0 68 274-347 152-233 (346)
81 3a04_A Tryptophanyl-tRNA synth 85.2 0.71 2.4E-05 45.8 4.5 67 274-347 208-280 (372)
82 3sz3_A Tryptophanyl-tRNA synth 82.7 0.76 2.6E-05 45.0 3.5 69 274-348 143-228 (341)
83 2yy5_A Tryptophanyl-tRNA synth 78.6 1.7 5.7E-05 42.7 4.4 65 14-93 12-76 (348)
84 1jil_A Tyrrs, tyrosyl-tRNA syn 78.5 4.2 0.00014 40.9 7.4 71 14-92 40-113 (420)
85 1y42_X Tyrosyl-tRNA synthetase 76.8 4.4 0.00015 40.4 6.9 32 14-51 72-104 (392)
86 2yxn_A Tyrosyl-tRNA synthetase 76.7 1.9 6.6E-05 41.8 4.1 40 5-51 33-73 (322)
87 1h3f_A Tyrosyl-tRNA synthetase 74.3 6 0.0002 39.9 7.2 41 4-51 36-77 (432)
88 2ts1_A Tyrosyl-tRNA synthetase 73.7 2.2 7.6E-05 42.9 3.8 32 14-51 38-70 (419)
89 2pid_A Tyrosyl-tRNA synthetase 73.0 2.8 9.6E-05 41.2 4.3 39 6-51 47-86 (356)
90 3p0j_A Tyrosyl-tRNA synthetase 72.5 7.3 0.00025 41.8 7.7 69 15-92 390-458 (690)
91 2jan_A Tyrosyl-tRNA synthetase 70.5 2.9 0.0001 42.1 3.8 40 5-51 32-72 (432)
92 1lko_A Rubrerythrin all-iron(I 45.9 18 0.00062 31.9 4.1 38 99-136 127-164 (191)
93 3pwf_A Rubrerythrin; non heme 36.1 32 0.0011 29.7 4.0 36 99-136 112-147 (170)
94 2k53_A A3DK08 protein; NESG, C 35.0 17 0.00058 26.7 1.8 50 28-81 8-63 (76)
95 2k5e_A Uncharacterized protein 29.5 15 0.00051 26.8 0.7 50 29-82 11-66 (73)
96 3dvk_B Voltage-dependent R-typ 27.8 62 0.0021 17.7 2.7 19 20-38 2-21 (23)
97 1qjc_A Phosphopantetheine aden 25.1 80 0.0027 26.2 4.7 39 5-55 2-40 (158)
No 1
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=9.5e-98 Score=799.54 Aligned_cols=480 Identities=39% Similarity=0.682 Sum_probs=443.5
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.+|+||||+|+||+||.|||||+++++++|+++||+||+ |++|++++|+||||+||+.+|+++|++|+++|+++.+.|
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~--G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVK--GERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhc--CCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 82 KLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 82 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
++++++|||++|.+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++++++++.+.|
T Consensus 85 ~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~--------------- 149 (542)
T 3u1f_A 85 KKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGV--------------- 149 (542)
T ss_dssp HHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEE---------------
T ss_pred HHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccc---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCC-cccc
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKAR-VHWG 240 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~-~~WG 240 (528)
+.+|..++.|++||++++++.++|||++++++++.+.+|++..+..+.|+..++.+.+|++++++|||||||+.. ..||
T Consensus 150 ~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WG 229 (542)
T 3u1f_A 150 DKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWA 229 (542)
T ss_dssp CTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCS
T ss_pred cccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCC
Confidence 556788889999999999999999999999999999999999888899999999999999999999999999610 1399
Q ss_pred cccCCCCCCeEEEeccchhhhhhhhcCC-----------C-CC--C-CCccceEeeecccchhhhHHHHHHhhcCCCCCc
Q psy4049 241 IPVPDDDTQTIYVWLDALMNYLTVSGYP-----------D-FH--T-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPK 305 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~~~~~~~~-----------~-~~--~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~ 305 (528)
+|||.+++++++||||+..+|+++.++. + +. . ||.|+|++|+||++||+.+|++++.+.|.++++
T Consensus 230 ipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~~~ 309 (542)
T 3u1f_A 230 IPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLPK 309 (542)
T ss_dssp CEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCS
T ss_pred CccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccccc
Confidence 9999999999999999999999887531 1 11 2 799999999999999999999999999999999
Q ss_pred EEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4049 306 SFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK 385 (528)
Q Consensus 306 ~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~ 385 (528)
.+++||+++.+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+.+..++++.++++|+++|+...
T Consensus 310 ~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~ 389 (542)
T 3u1f_A 310 KIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSA 389 (542)
T ss_dssp CEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCT
T ss_pred eeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998888999999999999888888999999999999876
Q ss_pred ccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc
Q psy4049 386 SINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK 465 (528)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~ 465 (528)
..+..+..+.. ......|+++++++.++.+++.++|++|++++|++.|++|++.+|+|++..+||.+.+++
T Consensus 390 ~~~~~~~~~~~--------~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d- 460 (542)
T 3u1f_A 390 KINVNGEWPSP--------AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD- 460 (542)
T ss_dssp TTSTTSBCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-
T ss_pred hhcccCCCCcc--------chhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCC-
Confidence 55544433321 124678999999999999999999999999999999999999999999999999887664
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCc
Q psy4049 466 IEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTN 507 (528)
Q Consensus 466 ~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~ 507 (528)
.++++++++++.++++.+++||+||||+++|+||+.|+.+..
T Consensus 461 ~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~ 502 (542)
T 3u1f_A 461 PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEV 502 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCc
Confidence 556788899999999999999999999999999999998653
No 2
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=3.4e-96 Score=785.45 Aligned_cols=485 Identities=38% Similarity=0.682 Sum_probs=443.0
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.++++|||+|+|||||++||||+|+++++|+++||+|++ |++|.+++|+|+||++|+.+|++.|.+|+++++++.+.|
T Consensus 24 ~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~--G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 24 KQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVK--GEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc--CCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 82 KLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 82 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
++++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|+++++++++...|
T Consensus 102 ~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~--------------- 166 (564)
T 3kfl_A 102 KQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGV--------------- 166 (564)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEE---------------
T ss_pred HHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCc---------------
Confidence 99999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccc---cCCCcc
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR---PKARVH 238 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR---~~~~~~ 238 (528)
+.+|..+.++..||++++++.++||||+++++++.+.+|+++....+.|+..++.+.+|++.|++|||||| ++ ++
T Consensus 167 ~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~--~~ 244 (564)
T 3kfl_A 167 DRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESV--MN 244 (564)
T ss_dssp CTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGG--TT
T ss_pred CCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCC--CC
Confidence 22333322223589999999999999999999999999999887778999999999999998899999999 33 69
Q ss_pred cccccCCCCCCeEEEeccchhhhhhhhcC-CC----------C--CC-CCccceEeeecccchhhhHHHHHHhhcCCCCC
Q psy4049 239 WGIPVPDDDTQTIYVWLDALMNYLTVSGY-PD----------F--HT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPP 304 (528)
Q Consensus 239 WG~~ip~~~~~~~~~wfds~~~~~~~~~~-~~----------~--~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~ 304 (528)
||+|||+++++++||||||+++|++++|+ ++ | +. ||.|+|++|+||++||+++|+++++++|.++|
T Consensus 245 WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~ 324 (564)
T 3kfl_A 245 WSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLP 324 (564)
T ss_dssp CSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCC
T ss_pred CCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999987 42 5 66 99999999999999999999999999999999
Q ss_pred cEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4049 305 KSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLS 384 (528)
Q Consensus 305 ~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~ 384 (528)
+++++|||++.+|+|||||+||+|+|.|++++||+|++|||+++..++.+|++|+++.+.+..|+++.++++|+++|+.+
T Consensus 325 ~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~ 404 (564)
T 3kfl_A 325 ERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVA 404 (564)
T ss_dssp SCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHC
T ss_pred cEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777899999999999988888899999999999998
Q ss_pred cccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC
Q psy4049 385 KSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN 464 (528)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~ 464 (528)
+..+.++..|.. ......|++++++++.+.+.+.++|++|++++|++.|++|++.+|+|++..+||.+.+++
T Consensus 405 ~~~~~~g~~p~~--------~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~ 476 (564)
T 3kfl_A 405 PKINVNGMWPEP--------AEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMD 476 (564)
T ss_dssp TTTSTTSBCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTC
T ss_pred HHHhcCCcCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCC
Confidence 765444433321 123578999999999999999999999999999999999999999999999999887654
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCccc-ccccc
Q psy4049 465 KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNER-LWDNM 514 (528)
Q Consensus 465 ~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~-~w~~~ 514 (528)
.+++.+++.++.++++.++++|+||||+++|+||+.|+.+.... .|...
T Consensus 477 -~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~~ 526 (564)
T 3kfl_A 477 -TARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENY 526 (564)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGGS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccccCHhHh
Confidence 55677899999999999999999999999999999999875544 66654
No 3
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=9.7e-95 Score=772.49 Aligned_cols=479 Identities=35% Similarity=0.643 Sum_probs=426.9
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++|||+|+|||||++||||+|+++++|+++||+|++ |++|.+++|+||||++|+.+|++.|.+|+++++++.+.|+
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~--G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLN--GMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhc--CCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++++|||++|.|++|+++.|.+.++++|.+|.++|++|++++.++||+.|++++++.++...
T Consensus 102 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~----------------- 164 (536)
T 4dlp_A 102 RMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR----------------- 164 (536)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC-----------------
T ss_pred HHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988653
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ 242 (528)
.+|. .|.+||.+++++.++||||+++++++.+.++++..+..+.|+..++.+.+|++++++||||||++ ++||+|
T Consensus 165 ~~g~---~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~--~~WGip 239 (536)
T 4dlp_A 165 ADGV---RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTT--FDWGIP 239 (536)
T ss_dssp TTSC---EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC----CCSCB
T ss_pred CCCC---cccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCC--CcCCee
Confidence 1232 47889999999999999999999999999999998777899999999999999889999999986 789999
Q ss_pred cCCCCCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeeeeCC
Q psy4049 243 VPDDDTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDG 317 (528)
Q Consensus 243 ip~~~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~~~g 317 (528)
||.++++++||||||+++|++++||++ |+. ||.|++++|+||++||+++|++++.++|.++|+++++|||++.+|
T Consensus 240 iP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G 319 (536)
T 4dlp_A 240 VPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRG 319 (536)
T ss_dssp CTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC--
T ss_pred CCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCC
Confidence 999999999999999999999999975 677 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCc
Q psy4049 318 VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSIN-PDNVNPLV 396 (528)
Q Consensus 318 ~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~-~~~~~~~~ 396 (528)
+|||||+||+|+|.|++++||+|++|||+++.+++.+|++|+++.+.+..++++.++++|+++|+.+++.+ ..+..|..
T Consensus 320 ~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~ 399 (536)
T 4dlp_A 320 EKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQP 399 (536)
T ss_dssp ----------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCC
T ss_pred ceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Confidence 99999999999999999999999999999987778999999999999888888999999999998876432 22223321
Q ss_pred ccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHH
Q psy4049 397 NRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVT 476 (528)
Q Consensus 397 ~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l 476 (528)
......|++++++++++.+.+.++|++|++++|++++++|+..+|+|++..+||.+.+++ .+++.+++.++
T Consensus 400 --------~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~-~~~~~~~~~~l 470 (536)
T 4dlp_A 400 --------GAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTD-PARMGTVLYVT 470 (536)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-HHHHHHHHHHH
T ss_pred --------ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCC-HHHHHHHHHHH
Confidence 124578999999999999999999999999999999999999999999999999876543 45577889999
Q ss_pred HHHHHHHHHcccccchHHHHHHHHHcCCCCcccccccc
Q psy4049 477 FEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNM 514 (528)
Q Consensus 477 ~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w~~~ 514 (528)
.++++.+++||+||||+++|+||+.|+.+.....|...
T Consensus 471 ~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~~~~~~ 508 (536)
T 4dlp_A 471 AEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADV 508 (536)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSCSTHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHcCCCccccCHHHh
Confidence 99999999999999999999999999997655666543
No 4
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.1e-92 Score=775.32 Aligned_cols=493 Identities=24% Similarity=0.421 Sum_probs=441.5
Q ss_pred CcEEEECCCCCCCCCChhhHHHH-HHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYT-ALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~-~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+++|||+|+|||||.+||||+++ ++++|+++||+|++ |++|++++|||+||+||+.+|+++|++|+++++++.+.|+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~--G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~ 79 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLK--GEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIK 79 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHT--TCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhc--CCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999 99999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCc----hhhhhhhhcc
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKN----EEESFLLEHQ 158 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~----~~~~~~~~~~ 158 (528)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||+++++++||+.|++|++++++++.||. +..+-.|+.|
T Consensus 80 ~~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~ 159 (722)
T 1rqg_A 80 ITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVC 159 (722)
T ss_dssp HHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSS
T ss_pred HHHHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999874 1234578877
Q ss_pred CC-CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCc
Q psy4049 159 IR-PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARV 237 (528)
Q Consensus 159 ~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~ 237 (528)
+. +++.....|+|++||++++++.++||||+++++++.+.+++++.. +|...++.+.+||+.+++||||||++
T Consensus 160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~--- 233 (722)
T 1rqg_A 160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDL--- 233 (722)
T ss_dssp CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECC---
T ss_pred ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceeccc---
Confidence 76 355666788999999999999999999999999999999998875 58899999999998789999999994
Q ss_pred ccccccCC----CCCCeEEEeccchhhhhhhhc-------CCC-CCC-CC--c----cceEeeecccchhhhHHHHHHhh
Q psy4049 238 HWGIPVPD----DDTQTIYVWLDALMNYLTVSG-------YPD-FHT-WP--P----HIQILGKDILKFHGIYWPAFLIA 298 (528)
Q Consensus 238 ~WG~~ip~----~~~~~~~~wfds~~~~~~~~~-------~~~-~~~-~~--~----di~~~G~D~~~~h~~~~~a~~~~ 298 (528)
+||+|+|. ..++++|||||++++|++.++ .++ |+. |+ . ++|++|+|+++||.++||+++++
T Consensus 234 ~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~ 313 (722)
T 1rqg_A 234 NWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMA 313 (722)
T ss_dssp SSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHT
T ss_pred cCccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhc
Confidence 89999995 678999999999999987764 222 666 76 2 28999999999999999999988
Q ss_pred cC----------CCCCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 299 AG----------LEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 299 ~~----------~~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
.+ .+.|+++++|||++.+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+.+..|
T Consensus 314 ~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n 393 (722)
T 1rqg_A 314 YGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRIN 393 (722)
T ss_dssp TCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHH
T ss_pred cCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHH
Confidence 75 57779999999999999999999999999999999999999999999988889999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy4049 369 AELANTLGNLLNRCLSKSIN-PDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHL 447 (528)
Q Consensus 369 ~~l~~~l~n~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~ 447 (528)
+++.++++|+++|+..+..+ .++..+.. ..+...|++++..+..+.+.+.++|++|++++|++.|++|++.
T Consensus 394 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~--------~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~ 465 (722)
T 1rqg_A 394 EELVNNLGNFVHRALTFVNRYFDGVVPER--------GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASF 465 (722)
T ss_dssp HTTTTTHHHHHHHHHHHHHHHSTTBCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88999999999998876532 22222210 1235679999999999999999999999999999999999999
Q ss_pred HhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCcccccccc
Q psy4049 448 ANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNM 514 (528)
Q Consensus 448 ~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w~~~ 514 (528)
+|+|++..+||.+.+++ .++++++++++.++++.+++||+||||+++|+||+.|+.+. ...|+..
T Consensus 466 ~n~Yi~~~kpw~~~k~~-~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~-~~~w~~~ 530 (722)
T 1rqg_A 466 GNRYFDHKQPWKTAKED-KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDE-VKRWEFR 530 (722)
T ss_dssp HHHHHHTTCHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCS-CCCSSCC
T ss_pred HHHHHHhcCchhhcCCC-HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCc-ccCchhc
Confidence 99999999999776543 45677888999999999999999999999999999999753 2467653
No 5
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1e-92 Score=760.77 Aligned_cols=492 Identities=22% Similarity=0.360 Sum_probs=445.2
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.++++|||+|||||||++||||+|+++++|+++||+|++ |++|.+++|+|+||++|+.+|++.|++++++++++.+.|
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~--G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 93 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMR--GHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEH 93 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHc--CCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCch----hhhhhhhc
Q psy4049 82 KLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE----EESFLLEH 157 (528)
Q Consensus 82 ~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~----~~~~~~~~ 157 (528)
++++++|||++|.|++|+++.|.+.++++|.+|+++|++|++++.++||+.|+++++++++++.||.. ..+..||.
T Consensus 94 ~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~ 173 (560)
T 3h99_A 94 QTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEV 173 (560)
T ss_dssp HHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTT
T ss_pred HHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998742 34568998
Q ss_pred cCC-CCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCC
Q psy4049 158 QIR-PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKAR 236 (528)
Q Consensus 158 ~~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~ 236 (528)
|+. .++.....|+|.+||.+++++.+.||||+++++++.+.+++++. ..|...++.+.+|++.+++||||||++
T Consensus 174 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~-- 248 (560)
T 3h99_A 174 CGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG---ALQEQVANKMQEWFESGLQQWDISRDA-- 248 (560)
T ss_dssp TCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS---CSCHHHHHHHHHHHHHCCCCEECEEES--
T ss_pred ccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhcCCCCCCccccC--
Confidence 886 46666677899999999999999999999999999999999885 356678999999999889999999996
Q ss_pred cccccccCCCCCCeEEEeccchhhhhhhhc-C-------CCCCC-CCcc-----ceEeeecccchhhhHHHHHHhhcCCC
Q psy4049 237 VHWGIPVPDDDTQTIYVWLDALMNYLTVSG-Y-------PDFHT-WPPH-----IQILGKDILKFHGIYWPAFLIAAGLE 302 (528)
Q Consensus 237 ~~WG~~ip~~~~~~~~~wfds~~~~~~~~~-~-------~~~~~-~~~d-----i~~~G~D~~~~h~~~~~a~~~~~~~~ 302 (528)
.+||+|||.++++++|||||++++|++.++ + .+|+. ||.+ +|+.|+||++||+++|++++.++|++
T Consensus 249 ~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~ 328 (560)
T 3h99_A 249 PYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR 328 (560)
T ss_dssp SCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC
T ss_pred CcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCC
Confidence 489999999999999999999999998873 2 12566 8888 99999999999999999999999999
Q ss_pred CCcEEEEeeeeeeCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCC-CCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 303 PPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH-SDSNYSETKAKNILNAELANTLGNLLNR 381 (528)
Q Consensus 303 ~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~-~~~~f~~~~~~~~~~~~l~~~l~n~~~r 381 (528)
+|+++++||+++.+|+|||||+||+|+|.|++++||+|++|||+++.++.. +|++|+++.+.+..++++.++++|+++|
T Consensus 329 ~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R 408 (560)
T 3h99_A 329 KPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASR 408 (560)
T ss_dssp CCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHT
T ss_pred CCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999887756 8999999999887788899999999999
Q ss_pred HHhcccC-CCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccc
Q psy4049 382 CLSKSIN-PDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTL 460 (528)
Q Consensus 382 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l 460 (528)
+.++..+ .++..+ ....|++++++++.+.+.+.++|++|++++|++++++|+..+|+|++..+||.+
T Consensus 409 ~~~~~~~~~~~~~~------------~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l 476 (560)
T 3h99_A 409 NAGFINKRFDGVLA------------SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVV 476 (560)
T ss_dssp THHHHHHHSTTBCC------------SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCCCCC------------CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 8875432 111111 124689999999999999999999999999999999999999999999999976
Q ss_pred cccC-cHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCccccccccc
Q psy4049 461 RKEN-KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMR 515 (528)
Q Consensus 461 ~~~~-~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w~~~~ 515 (528)
.++. ...++.+++.++.++++.+++||+||||+++|+||+.|+.+ ..|+..+
T Consensus 477 ~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~---~~w~~~~ 529 (560)
T 3h99_A 477 AKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE---LTWDGIQ 529 (560)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC---CCTGGGG
T ss_pred cCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC---CChhhhh
Confidence 5542 35567788889999999999999999999999999999986 5787654
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=9.6e-91 Score=741.35 Aligned_cols=480 Identities=36% Similarity=0.666 Sum_probs=432.7
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+++++|++|+|||||++||||+|+++++|+++||+|++ |++|.+++|+|+||+||+.+|+++|++|+++++++.+.|+
T Consensus 11 ~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~--G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 11 SEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLD--GYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhc--CCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.+++..
T Consensus 89 ~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g----------------- 151 (524)
T 2x1l_A 89 RLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQ----------------- 151 (524)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEC-----------------
T ss_pred HHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988643
Q ss_pred CCCCCccccc-CCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCccccc
Q psy4049 163 EKNEGQYVSI-ESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 163 ~~g~~~~~~~-~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
.+|. .|. +||.+++.+.++|||++++++++.+.++++.+...+.|+..++.+.+|+..+++|||||||| ++||+
T Consensus 152 ~~G~---~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr--~~WG~ 226 (524)
T 2x1l_A 152 PDGT---RIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTT--FDWGV 226 (524)
T ss_dssp TTSC---EEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESS--CCSSC
T ss_pred CCCC---ccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCC--CCcCc
Confidence 0122 477 89999999999999999999999999999876546789999999999998779999999997 67999
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeeee
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTV 315 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~~ 315 (528)
|+|.++++++||||||+++|++.+|+|. +.. ||.|+|++|+||++||+++|++++.++|.++|+++++|||++.
T Consensus 227 ~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~ 306 (524)
T 2x1l_A 227 PVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN 306 (524)
T ss_dssp EETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE
T ss_pred cCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe
Confidence 9998888999999999999999999875 445 8999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCC
Q psy4049 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSIN-PDNVNP 394 (528)
Q Consensus 316 ~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~-~~~~~~ 394 (528)
+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+.+..++++.++++|+++|+..+..+ ..+..+
T Consensus 307 ~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~ 386 (524)
T 2x1l_A 307 RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVP 386 (524)
T ss_dssp CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCC
T ss_pred CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999987778999999999999887777788899999887765321 111121
Q ss_pred CcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccC---cHHHHHH
Q psy4049 395 LVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN---KIEELNL 471 (528)
Q Consensus 395 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~---~~~~~~~ 471 (528)
.. ......|++++.++.++.+.+.++|++|+++.|++.|++|++.+|+|++..+||.+.++. .++.+++
T Consensus 387 ~~--------~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~ 458 (524)
T 2x1l_A 387 DP--------GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRT 458 (524)
T ss_dssp CC--------CCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHH
T ss_pred Cc--------cccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCccccCHHHHHH
Confidence 10 113577999999999999999999999999999999999999999999999999877642 2455677
Q ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHHHcCCCCcccccccc
Q psy4049 472 VLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNM 514 (528)
Q Consensus 472 ~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w~~~ 514 (528)
++.++.++++.++++|+||||+++|+||+.|+.+.....|+..
T Consensus 459 ~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~~~~~~ 501 (524)
T 2x1l_A 459 VLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDERDFSAI 501 (524)
T ss_dssp HHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTSCSGGGG
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCccccchhHh
Confidence 8889999999999999999999999999999987655567654
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.1e-89 Score=729.88 Aligned_cols=469 Identities=35% Similarity=0.614 Sum_probs=424.0
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++|||+|+|||||++||||+|+++++|+++||+|++ |++|++++|+|+||++|+.+|+++|++++++++++.+.|+
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~--G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 79 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD--GYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFK 79 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcC--CCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++++|||++|.+++|+++.|.+.++++|.+|+++|++|++++.++||+.|++++++.++...
T Consensus 80 ~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g----------------- 142 (500)
T 2d5b_A 80 RAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEG----------------- 142 (500)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTT-----------------
T ss_pred HHHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCC-----------------
Confidence 999999999999999999999999999999999999999999999999999999998876443
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccc--cCCCcccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR--PKARVHWG 240 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR--~~~~~~WG 240 (528)
.|++||.+++.+.+.|||++++++++.+.+++++.+..+.|+..++.+.+|++.+++|||||| ++ ++||
T Consensus 143 -------~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~--~~WG 213 (500)
T 2d5b_A 143 -------LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSR--VPWG 213 (500)
T ss_dssp -------BCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTT--CCSS
T ss_pred -------cCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccc--ccCc
Confidence 389999999999999999999999999999999876567899999999999988899999999 65 6899
Q ss_pred cccCCCCCCeEEEeccchhhhhhhhcCCC---CCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeeee-
Q psy4049 241 IPVPDDDTQTIYVWLDALMNYLTVSGYPD---FHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTV- 315 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~~~~~~~~~---~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~~- 315 (528)
+|+|.++++++||||||+++|++.+||+. +.. ||.|+|++|+||++||+++|++++.++|.++|+++++||+++.
T Consensus 214 ~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~ 293 (500)
T 2d5b_A 214 IPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGP 293 (500)
T ss_dssp CEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECT
T ss_pred cccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeC
Confidence 99999999999999999999999999875 445 8999999999999999999999999999999999999999988
Q ss_pred CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCC
Q psy4049 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINP-DNVNP 394 (528)
Q Consensus 316 ~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~-~~~~~ 394 (528)
+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+.+..++.+.++++|+++|+.++..+. .+..+
T Consensus 294 ~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~ 373 (500)
T 2d5b_A 294 DGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIP 373 (500)
T ss_dssp TSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCC
T ss_pred CCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999867789999999999998877778888899988877643211 11111
Q ss_pred CcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHH
Q psy4049 395 LVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLG 474 (528)
Q Consensus 395 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~ 474 (528)
. ..+++++.++.++.+.+.++|++|++++|++.|++|++.+|+|++..+||.+.+++ .+.+++++.
T Consensus 374 ~-------------~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~-~~~~~~~~~ 439 (500)
T 2d5b_A 374 E-------------PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKE-PEEARAVLY 439 (500)
T ss_dssp C-------------CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-HHHHHHHHH
T ss_pred c-------------hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCc-HHHHHHHHH
Confidence 0 11367888889999999999999999999999999999999999999998665443 234667888
Q ss_pred HHHHHHHHHHHcccccchHHHHHHHHHcCCCCcccccccc
Q psy4049 475 VTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNM 514 (528)
Q Consensus 475 ~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w~~~ 514 (528)
++.++++.++++|+||||+++|+||+.|+.+. ...|+.+
T Consensus 440 ~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~~~~~~~ 478 (500)
T 2d5b_A 440 RVVEGLRIASILLTPAMPDKMAELRRALGLKE-EVRLEEA 478 (500)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-SCCGGGG
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHcCCCc-ccChhhh
Confidence 99999999999999999999999999999864 4566543
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=4.6e-89 Score=723.79 Aligned_cols=468 Identities=36% Similarity=0.649 Sum_probs=395.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++|||+|+|||||.+||||+|+++++|+++||+|++ |++|++++|+|+||++|+.+|+++|++++++++++.+.|+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~--G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 81 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLR--DYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFK 81 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhc--CCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 83 LMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 83 ~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++++|||++|.+++|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.++...
T Consensus 82 ~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~----------------- 144 (497)
T 2csx_A 82 KLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAED----------------- 144 (497)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------------------------
T ss_pred HHHHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccC-----------------
Confidence 999999999999999999999999999999999999999999999999999999998877531
Q ss_pred CCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccc--cCCCcccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR--PKARVHWG 240 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR--~~~~~~WG 240 (528)
+.|++||.+++.+.+.|||++++++++.+.+++++.+..+.|+..++.+.+|++.+++|||||| ++ ++||
T Consensus 145 ------~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG 216 (497)
T 2csx_A 145 ------HTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWG 216 (497)
T ss_dssp -------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSS
T ss_pred ------CCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCc
Confidence 1488999999999999999999999999999999887678899999999999988899999999 65 6899
Q ss_pred cccCCCCCCeEEEeccchhhhhhhhcCCCCCC-CCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeeeeeCCCc
Q psy4049 241 IPVPDDDTQTIYVWLDALMNYLTVSGYPDFHT-WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVK 319 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~~~~g~K 319 (528)
+|+|.++++++||||||+++|.+.+... ... ||.|+|++|+||++||+++|++++.++|.++|+++++|||++.+|+|
T Consensus 217 ~~iP~~~~~~i~vW~ds~~~~~s~~~~~-~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~K 295 (497)
T 2csx_A 217 IPVPFDPEHTIYVWFDALFNYISALEDK-VEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKK 295 (497)
T ss_dssp EEETTEEEEEECSHHHHHTHHHHTTTTT-HHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSB
T ss_pred eecCCCCCceEEEecccchhhcccCCCc-chhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCce
Confidence 9999888899999999999998877210 014 89999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCccc
Q psy4049 320 MSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINP-DNVNPLVNR 398 (528)
Q Consensus 320 mSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~-~~~~~~~~~ 398 (528)
||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+.+..++++.++++|+++|+.++..+. .+..+
T Consensus 296 MSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~---- 371 (497)
T 2csx_A 296 MSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVS---- 371 (497)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBC----
T ss_pred eCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----
Confidence 9999999999999999999999999999877889999999999998877778889999999998764321 11110
Q ss_pred chhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHH
Q psy4049 399 ECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFE 478 (528)
Q Consensus 399 ~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~ 478 (528)
...|++++..+.++.+.+.++|++|+++.|++.|++|++.+|+|++..+||.+.++..++.+++++.++.+
T Consensus 372 ---------~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~ 442 (497)
T 2csx_A 372 ---------GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVD 442 (497)
T ss_dssp ---------CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHH
Confidence 24578899999999999999999999999999999999999999999999866543235567788999999
Q ss_pred HHHHHHHcccccchHHHHHHHHHcCCCCccccccc
Q psy4049 479 VLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDN 513 (528)
Q Consensus 479 ~l~~l~~ll~P~~P~~~e~l~~~l~~~~~~~~w~~ 513 (528)
+++.++++|+|||||++|+||+.|+.+. ..|+.
T Consensus 443 ~l~~~~~ll~P~~P~~aeei~~~L~~~~--~~~~~ 475 (497)
T 2csx_A 443 GLFVLTHLLYPITPNKMKEALQMLGEKE--FLKEL 475 (497)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHTTCSC--CCSSC
T ss_pred HHHHHHHHhcCccCHHHHHHHHHcCCCc--cchhh
Confidence 9999999999999999999999998763 34554
No 9
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.4e-84 Score=718.91 Aligned_cols=495 Identities=19% Similarity=0.233 Sum_probs=408.6
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHH----cCCCHH------
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK----HKLETI------ 71 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~----~g~~~~------ 71 (528)
.+++|+|+.|||||||.|||||+++++++|+++||+||+ |++|++++|||+||.+++.++++ .|+++.
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~--G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~ 109 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMR--GFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTT--TSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTH
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhC--CCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHH
Confidence 357899999999999999999999999999999999999 99999999999999999988873 466653
Q ss_pred ------HHHHHHHHHHHHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccc
Q psy4049 72 ------DFCNKISDQYKLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIR 143 (528)
Q Consensus 72 ------~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~ 143 (528)
+|++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|++++++.+|+
T Consensus 110 f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~ 189 (862)
T 1gax_A 110 FLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccc
Confidence 6789999999999999999887 33349999999999999999999999999999999999999999999886
Q ss_pred cC-----------------------------------------------------CCch---------------------
Q psy4049 144 PD-----------------------------------------------------EKNE--------------------- 149 (528)
Q Consensus 144 ~~-----------------------------------------------------~~~~--------------------- 149 (528)
.+ ||..
T Consensus 190 ~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V 269 (862)
T 1gax_A 190 TEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGAL 269 (862)
T ss_dssp ECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEE
T ss_pred cccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcce
Confidence 22 1100
Q ss_pred --------------------------hhhhhhhcc--CCC----------------CC---------CCCCcccccCCCC
Q psy4049 150 --------------------------EESFLLEHQ--IRP----------------DE---------KNEGQYVSIESNQ 176 (528)
Q Consensus 150 --------------------------~~~~~~~~~--~~~----------------~~---------~g~~~~~~~~~g~ 176 (528)
.++.+|+.| +.. .+ ..+.+|+|++||+
T Consensus 270 ~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~ 349 (862)
T 1gax_A 270 KVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGT 349 (862)
T ss_dssp ECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCS
T ss_pred EecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCC
Confidence 000111222 100 00 1125689999999
Q ss_pred CcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCC---C-------
Q psy4049 177 PVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD---D------- 246 (528)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~---~------- 246 (528)
+++++.++|||++++++++.+.++++.++..|.|+..++.+.+||++ ++|||||||+ +||+|||. .
T Consensus 350 ~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~-l~DW~ISRqr---~WG~pIP~w~~~~~~~i~v 425 (862)
T 1gax_A 350 PIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLEN-VKDWNISRQL---WWGHQIPAWYCEDCQAVNV 425 (862)
T ss_dssp BCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHT-CCCCCCBCCC---SSSCCCCCEEETTTCCEEC
T ss_pred eEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhc-ccceeEeccc---CCCcccCceecCCCCEEEE
Confidence 99999999999999999999999998777789999999999999997 9999999996 99999993 1
Q ss_pred -----------------------CCCeEEEeccchhhhhhhhcCCC----CCC-CCccceEeeecccchhhhHHHHHHh-
Q psy4049 247 -----------------------DTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQILGKDILKFHGIYWPAFLI- 297 (528)
Q Consensus 247 -----------------------~~~~~~~wfds~~~~~~~~~~~~----~~~-~~~di~~~G~D~~~~h~~~~~a~~~- 297 (528)
+.+|+|+||||+++|++.+|||+ ++. ||.|++++|+||++||.....++..
T Consensus 426 ~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~ 505 (862)
T 1gax_A 426 PRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYH 505 (862)
T ss_dssp CCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHH
T ss_pred eccccccccchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHH
Confidence 14678999999999999999986 445 8999999999999964443333322
Q ss_pred hcCCCCCcEEEEeeeee-eCCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Q psy4049 298 AAGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLG 376 (528)
Q Consensus 298 ~~~~~~~~~~~~hg~~~-~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 376 (528)
..|..||+++++||+++ .+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+++. +++.++++
T Consensus 506 ~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~--~~f~nkl~ 583 (862)
T 1gax_A 506 FMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA--RNFANKLY 583 (862)
T ss_dssp HSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHH--HHHHHHHH
T ss_pred hcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHH--HHHHHHHH
Confidence 34667889999999996 7999999999999999999999999999999998878899999999999886 44899999
Q ss_pred HHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhHhhhc
Q psy4049 377 NLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LANKFIDT 454 (528)
Q Consensus 377 n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n~y~~~ 454 (528)
|+...+....... .+. . ......|+|++++++.+.+.+.++|++|+++.|++.+++|++ .+|+|++.
T Consensus 584 N~~rf~~~~~~~~---~~~--~------~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~ 652 (862)
T 1gax_A 584 NAARFVLLSREGF---QAK--E------DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEA 652 (862)
T ss_dssp HHHHHHHHHSSSC---CCC--B------CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHhcccCC---CCc--c------ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9974443221111 111 0 123578999999999999999999999999999999999993 69999999
Q ss_pred cCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHcCC--CCcccccccccccCccc
Q psy4049 455 TKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI--PTNERLWDNMRFSDNDM 521 (528)
Q Consensus 455 ~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~--~~~~~~w~~~~~~~~~~ 521 (528)
.++| +..+ +.++..++..+|+.+++||+|||||++|+||+.|+. +.....||..+.+|.++
T Consensus 653 ~k~~-l~~~-----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~sv~~~~wP~~~~~d~~~ 715 (862)
T 1gax_A 653 AKPA-LKAG-----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGKEELALEAWPEPGGRDEEA 715 (862)
T ss_dssp HHHH-HHTT-----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCCSCGGGSCCCCCCCCCHHH
T ss_pred cchh-hhcc-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCeEEecCCCCCCcCCHHH
Confidence 8876 2221 234667888999999999999999999999999963 33467899887544443
No 10
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.8e-82 Score=708.27 Aligned_cols=501 Identities=19% Similarity=0.232 Sum_probs=409.1
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCH------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLET------------ 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~------------ 70 (528)
+++|+|+.|||||||.|||||+++++++|+++||.||+ |++|.+++|||+||+||+.+|++.|+++
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~--G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~ 124 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQ--GFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKC 124 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTT--TCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHH
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhC--CCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHH
Confidence 57899999999999999999999999999999999999 9999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHhhcCcc--cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCC--
Q psy4049 71 IDFCNKISDQYKLMFKTYDIE--YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDE-- 146 (528)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~-- 146 (528)
.++++++.+.+++++++||++ +|+++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+++|++.+|+.++
T Consensus 125 ~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~ 204 (917)
T 1ffy_A 125 KEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKR 204 (917)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccccc
Confidence 679999999999999999996 5699999999999999999999999999999999999999999999999986210
Q ss_pred -C---------------------------------------ch----------hh-------------------hhh---
Q psy4049 147 -K---------------------------------------NE----------EE-------------------SFL--- 154 (528)
Q Consensus 147 -~---------------------------------------~~----------~~-------------------~~~--- 154 (528)
+ .. ++ .+-
T Consensus 205 ~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 284 (917)
T 1ffy_A 205 SASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKL 284 (917)
T ss_dssp EEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCC
T ss_pred CceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeee
Confidence 0 00 00 000
Q ss_pred -hhccC---------------------------------------------------------CCCCCC-----------
Q psy4049 155 -LEHQI---------------------------------------------------------RPDEKN----------- 165 (528)
Q Consensus 155 -~~~~~---------------------------------------------------------~~~~~g----------- 165 (528)
++-++ .++.+|
T Consensus 285 ~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 364 (917)
T 1ffy_A 285 EKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEG 364 (917)
T ss_dssp CCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSS
T ss_pred eeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCC
Confidence 00000 001111
Q ss_pred ---------------------------CCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHH
Q psy4049 166 ---------------------------EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLR 218 (528)
Q Consensus 166 ---------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 218 (528)
+.+|+|++||+|++++.++|||++++++++.+.++++.. .|.|+..++++.
T Consensus 365 ~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~--~~~P~~~~~r~~ 442 (917)
T 1ffy_A 365 MFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENT--NFKVNWGKTRIY 442 (917)
T ss_dssp SCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTS--EESSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcC--cccCHHHHHHHH
Confidence 135789999999999999999999999999999999875 589999999999
Q ss_pred HHHhccCCCccccccCCCcccccccCC---C-------------------------------------------------
Q psy4049 219 NMCSEIENDISVSRPKARVHWGIPVPD---D------------------------------------------------- 246 (528)
Q Consensus 219 ~~l~~~~~dw~isR~~~~~~WG~~ip~---~------------------------------------------------- 246 (528)
+|+++ ++|||||||| +||+|||. +
T Consensus 443 ~~l~~-~~DW~ISRqr---~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~ 518 (917)
T 1ffy_A 443 NMVRD-RGEWVISRQR---VWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTF 518 (917)
T ss_dssp HHHHH-CCCEECEESC---SSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCC
T ss_pred HHHhc-CccceeeccC---CcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccc
Confidence 99998 9999999997 89999993 1
Q ss_pred --CCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccc--hhhhHHHHHHhhcCCCCCcEEEEeeeee-eCCCccc
Q psy4049 247 --DTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILK--FHGIYWPAFLIAAGLEPPKSFLVHSHWT-VDGVKMS 321 (528)
Q Consensus 247 --~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~--~h~~~~~a~~~~~~~~~~~~~~~hg~~~-~~g~KmS 321 (528)
+.+++||||||++++.+.+++..-..||+|++++|+||++ ||..++.+.. ..|.+||+++++|||++ .+|+|||
T Consensus 519 ~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G~KMS 597 (917)
T 1ffy_A 519 TKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEGKKMS 597 (917)
T ss_dssp EECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTSCCCC
T ss_pred cccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCCcCcc
Confidence 1357899999999888877653211299999999999998 4444444433 34777899999999997 5999999
Q ss_pred ccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchh
Q psy4049 322 KSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECY 401 (528)
Q Consensus 322 kS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~ 401 (528)
||+||+|+|.|++++||+|++|||+++ +++++|++|+++.+++. ++..++++|+++++...+.+... . ....
T Consensus 598 KSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~~~~---~--~~~v 669 (917)
T 1ffy_A 598 KSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNINDFNP---D--TDSI 669 (917)
T ss_dssp SSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTTCCH---H--HHCC
T ss_pred cccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhccCc---c--cccC
Confidence 999999999999999999999999998 67899999999999875 34678899998777654322110 0 0000
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhHhhhccCcccccccCcHHHHHHHHHHHHHH
Q psy4049 402 EVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLH--LANKFIDTTKPWTLRKENKIEELNLVLGVTFEV 479 (528)
Q Consensus 402 ~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~--~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~ 479 (528)
+ ...+...|++++.+++++.+++.++|++|+|++|++.|++|++ .+|.|++..|++..........+.++..++..+
T Consensus 670 ~-~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~ 748 (917)
T 1ffy_A 670 P-ESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQI 748 (917)
T ss_dssp C-GGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred C-ccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHH
Confidence 0 0123578999999999999999999999999999999999997 678899998886332221122345667778899
Q ss_pred HHHHHHcccccchHHHHHHHHHcCC----CCcccccccccccCccc
Q psy4049 480 LRICGIGLQPIVPKLADKLLTRLGI----PTNERLWDNMRFSDNDM 521 (528)
Q Consensus 480 l~~l~~ll~P~~P~~~e~l~~~l~~----~~~~~~w~~~~~~~~~~ 521 (528)
++.+++||+|||||++|+||+.|+. +.....||..+..++.+
T Consensus 749 l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~~~~~~~~l 794 (917)
T 1ffy_A 749 LVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQAL 794 (917)
T ss_dssp HHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCCCCCCCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCCCCcchHHH
Confidence 9999999999999999999999975 23457899877644443
No 11
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.2e-82 Score=706.30 Aligned_cols=503 Identities=17% Similarity=0.211 Sum_probs=406.8
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc-CCCH----------
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH-KLET---------- 70 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~-g~~~---------- 70 (528)
.+++|+|+.|||||||.|||||+++++++|+++||+||+ |++|++++|||+||+||+.+|++. |.++
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~--G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~ 113 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMR--GYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHT--TCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhc--CCcccccccccCCCchHHHHHHHHhcccccchHhhcCHH
Confidence 357899999999999999999999999999999999999 999999999999999999999985 8764
Q ss_pred ------HHHHHHHHHHHHHHHhhcC--cccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccc
Q psy4049 71 ------IDFCNKISDQYKLMFKTYD--IEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQI 142 (528)
Q Consensus 71 ------~~~~~~~~~~~~~~~~~l~--i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v 142 (528)
.++++++.+.+++++++|| +++|++++|+++.|.+.++++|.+|+++|+||++.++++|||.|+++|++.+|
T Consensus 114 ~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHh
Confidence 4688889999999999999 77889999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCc------------h-----------------------------------------hhhh---------------
Q psy4049 143 R-PDEKN------------E-----------------------------------------EESF--------------- 153 (528)
Q Consensus 143 ~-~~~~~------------~-----------------------------------------~~~~--------------- 153 (528)
. |.|.. + ++.+
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred hcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCc
Confidence 3 21000 0 0000
Q ss_pred ---------------------------------------------------------hhhcc-----CCCCCCCC-----
Q psy4049 154 ---------------------------------------------------------LLEHQ-----IRPDEKNE----- 166 (528)
Q Consensus 154 ---------------------------------------------------------~~~~~-----~~~~~~g~----- 166 (528)
.|... ..++.+|.
T Consensus 274 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~ 353 (821)
T 1ile_A 274 QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP 353 (821)
T ss_dssp CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGG
T ss_pred EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccC
Confidence 00000 00122221
Q ss_pred -------------------------------CcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhh-H
Q psy4049 167 -------------------------------GQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKF-Y 214 (528)
Q Consensus 167 -------------------------------~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~-~ 214 (528)
.+|+|++||+|++++.++|||++++++++.+.+++++. .|.|+.. .
T Consensus 354 ~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~--~~~P~~~~~ 431 (821)
T 1ile_A 354 FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEI--HWVPPHIKE 431 (821)
T ss_dssp GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHS--EESSGGGTT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCe--EEECchhhH
Confidence 34889999999999999999999999999999999876 4999988 4
Q ss_pred HHHHHHHhccCCCccccccCCCcccccccCC----C--------------------------------------------
Q psy4049 215 NQLRNMCSEIENDISVSRPKARVHWGIPVPD----D-------------------------------------------- 246 (528)
Q Consensus 215 ~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~----~-------------------------------------------- 246 (528)
+.+.+|+++ ++|||||||| +||+|||. +
T Consensus 432 ~~~~~~l~~-l~DW~ISRqr---~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~ 507 (821)
T 1ile_A 432 GRYGEWLKN-LVDWALSRNR---YWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGT 507 (821)
T ss_dssp TTTHHHHHT-CCCEECCBCC---SSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSE
T ss_pred hHHHHHHhC-CchheecccC---CCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCc
Confidence 589999985 9999999997 89999992 1
Q ss_pred ---CCCeEEEeccchhhhhhhhcCCC-----CCC-CCccceEeeecccchhhhHHHHHHhh-cCCCCCcEEEEeeeee-e
Q psy4049 247 ---DTQTIYVWLDALMNYLTVSGYPD-----FHT-WPPHIQILGKDILKFHGIYWPAFLIA-AGLEPPKSFLVHSHWT-V 315 (528)
Q Consensus 247 ---~~~~~~~wfds~~~~~~~~~~~~-----~~~-~~~di~~~G~D~~~~h~~~~~a~~~~-~~~~~~~~~~~hg~~~-~ 315 (528)
+.+|+||||||+++|++.+++|. |+. ||.|++++|+||++||.....++..+ .|.+||+++++||+++ .
T Consensus 508 ~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~ 587 (821)
T 1ile_A 508 MRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDE 587 (821)
T ss_dssp EEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECT
T ss_pred hhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECC
Confidence 12689999999999999999874 455 89999999999999654333333333 3677899999999986 5
Q ss_pred CCCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-
Q psy4049 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNP- 394 (528)
Q Consensus 316 ~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~- 394 (528)
+|+|||||+||+|+|.|++++||+|++|||+++.+++++|++|+++.+++.. +++.++++|+++++.... +..+..+
T Consensus 588 ~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~-~~~~~~~~ 665 (821)
T 1ile_A 588 KGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYA-NLDRPDLK 665 (821)
T ss_dssp TSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHH-HHHCCCTT
T ss_pred CCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHH-HHHHHHHHHHHHHHHHhh-ccccCCcc
Confidence 9999999999999999999999999999999998888999999999998743 347899999998764211 0001111
Q ss_pred CcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHhHhhhccCc--ccccccCcHHHHH
Q psy4049 395 LVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL--HLANKFIDTTKP--WTLRKENKIEELN 470 (528)
Q Consensus 395 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~--~~~n~y~~~~k~--~~l~~~~~~~~~~ 470 (528)
... .. ......|+++++.++.+.+.+.++|++|++++|++.|++|+ ..+|.|++..++ |....+.. +.
T Consensus 666 ~~~--~~---~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~---r~ 737 (821)
T 1ile_A 666 NPP--PP---EKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALD---RE 737 (821)
T ss_dssp SCC--CS---TTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSS---TT
T ss_pred ccc--cc---ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHH---HH
Confidence 000 00 12357799999999999999999999999999999999999 578999988754 33222111 23
Q ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHHHcCCC--------Cccccccccc--ccCccch
Q psy4049 471 LVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP--------TNERLWDNMR--FSDNDMF 522 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~P~~P~~~e~l~~~l~~~--------~~~~~w~~~~--~~~~~~~ 522 (528)
+++.++..+++.+++||+|||||++|+||+.|+.. .....||..+ .+|+++.
T Consensus 738 ~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~ 799 (821)
T 1ile_A 738 AAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALV 799 (821)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCCcccCCHHHH
Confidence 45667788999999999999999999999999752 2357899876 3454443
No 12
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.9e-74 Score=635.46 Aligned_cols=457 Identities=19% Similarity=0.279 Sum_probs=352.4
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.++++||++|||||||.|||||+++++++|+++||+||+ ||+|++++|||+||+|++.+|.+.|.+|.++++++.+.|
T Consensus 51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~--G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~ 128 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRML--GKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYM 128 (880)
T ss_dssp TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHT--TCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHc--CCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccC
Q psy4049 82 KLMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQI 159 (528)
Q Consensus 82 ~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~ 159 (528)
++++++||+++| +++.|+++.|.+.++++|.+|+++|+||+++++++||+.|+++|++.++...
T Consensus 129 ~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g-------------- 194 (880)
T 4arc_A 129 KNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDG-------------- 194 (880)
T ss_dssp HHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC--------------------------------
T ss_pred HHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcC--------------
Confidence 999999999988 8889999999999999999999999999999999999999999999988764
Q ss_pred CCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCC----------------------------------
Q psy4049 160 RPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE---------------------------------- 205 (528)
Q Consensus 160 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------- 205 (528)
.|++||.+++.+..+||||++++|++.+.++++...
T Consensus 195 ----------~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~ 264 (880)
T 4arc_A 195 ----------CCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLT 264 (880)
T ss_dssp ----------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEE
T ss_pred ----------cCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEE
Confidence 389999999999999999999988877665542110
Q ss_pred --------------------------------------------------------------------------------
Q psy4049 206 -------------------------------------------------------------------------------- 205 (528)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (528)
T Consensus 265 v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~ 344 (880)
T 4arc_A 265 VYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAAN 344 (880)
T ss_dssp EEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEET
T ss_pred EEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeC
Confidence
Q ss_pred ---------------------------------Ccccch------------------------------hhHHHHHHHHh
Q psy4049 206 ---------------------------------DVVKPK------------------------------KFYNQLRNMCS 222 (528)
Q Consensus 206 ---------------------------------~~~~p~------------------------------~~~~~~~~~l~ 222 (528)
..+.|. .+++.+.++|+
T Consensus 345 yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~ 424 (880)
T 4arc_A 345 FVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLT 424 (880)
T ss_dssp TSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHH
Confidence 000000 01223334444
Q ss_pred c----------cCCCccccccCCCcccccccCC----C------------------------------------------
Q psy4049 223 E----------IENDISVSRPKARVHWGIPVPD----D------------------------------------------ 246 (528)
Q Consensus 223 ~----------~~~dw~isR~~~~~~WG~~ip~----~------------------------------------------ 246 (528)
+ .++|||||||| +||+|||. +
T Consensus 425 ~~g~~~~~v~yrlrDW~iSRQR---yWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~ 501 (880)
T 4arc_A 425 AMGVGERKVNYRLRDWGVSRQR---YWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGM 501 (880)
T ss_dssp HTTSEEEEEEESCCCEECEESC---SSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSS
T ss_pred HcCCcceeEEEEcccceeeeee---ccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCC
Confidence 3 28999999998 99999991 0
Q ss_pred ----CCCeEEEeccchhhhhhhhcCCC-----C-----CC-CCccceEeeecccchh---hhHHHHHHhhcCC----CCC
Q psy4049 247 ----DTQTIYVWLDALMNYLTVSGYPD-----F-----HT-WPPHIQILGKDILKFH---GIYWPAFLIAAGL----EPP 304 (528)
Q Consensus 247 ----~~~~~~~wfds~~~~~~~~~~~~-----~-----~~-~~~di~~~G~D~~~~h---~~~~~a~~~~~~~----~~~ 304 (528)
+.+|||+||||+ +|++..++|. + +. +|+|++++|.||+..| ..||...|..+|. .||
T Consensus 502 ~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePF 580 (880)
T 4arc_A 502 PALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPA 580 (880)
T ss_dssp EEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSE
T ss_pred cceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCCh
Confidence 247899999997 5666666664 2 23 6999999999998766 5678888877764 688
Q ss_pred cEEEEeeeee--------eCCC------------------------------------cccccCCCccCcchhhhhcCch
Q psy4049 305 KSFLVHSHWT--------VDGV------------------------------------KMSKSVGNVVDPMSKLSDFTSC 340 (528)
Q Consensus 305 ~~~~~hg~~~--------~~g~------------------------------------KmSkS~gn~i~~~~~~~~~~~d 340 (528)
+++++||||+ .+|+ |||||+||+|+|.|++++||+|
T Consensus 581 k~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGAD 660 (880)
T 4arc_A 581 KQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGAD 660 (880)
T ss_dssp EEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHH
T ss_pred HHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCch
Confidence 9999999994 3565 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHH
Q psy4049 341 GLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQT 420 (528)
Q Consensus 341 ~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~ 420 (528)
++|||+++.++++++++|+.+.++.+. ++.++++|++..+..... .+.... ..+...|+++++++++
T Consensus 661 alRl~ll~~~~~~~dl~~s~~~ie~a~--rfl~rlwn~~~~~~~~~~-----~~~~~~------~~l~~~D~~ll~~l~~ 727 (880)
T 4arc_A 661 TVRLFMMFASPADMTLEWQESGVEGAN--RFLKRVWKLVYEHTAKGD-----VAALNV------DALTENQKALRRDVHK 727 (880)
T ss_dssp HHHHHHHHSSCTTSCEECCHHHHHHHH--HHHHHHHHHHHHHHHTCC-----CCCCCS------TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHHhccc-----cccccc------ccCCHHHHHHHHHHHH
Confidence 999999998888999999999998763 478899998876654211 000000 1235789999999999
Q ss_pred HHHHHHHHHh-cccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHH
Q psy4049 421 LHEDVKLHYS-EFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLL 499 (528)
Q Consensus 421 ~~~~v~~~~e-~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~~e~l~ 499 (528)
+.+.+.++|+ +|+|+.|++.+++|++.+++|.. + .. ....++..+++.+++||+||+||++|+||
T Consensus 728 ~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~---------~-~~----~~~~~l~~~l~~ll~LLaPf~PhiaEElW 793 (880)
T 4arc_A 728 TIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPT---------D-GE----QDRALMQEALLAVVRMLNPFTPHICFTLW 793 (880)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCC---------S-SH----HHHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhc---------c-ch----HHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999998 79999999999999988877521 1 11 13456778899999999999999999999
Q ss_pred HHcCCCC--ccccccccc
Q psy4049 500 TRLGIPT--NERLWDNMR 515 (528)
Q Consensus 500 ~~l~~~~--~~~~w~~~~ 515 (528)
+.|+... ....||..|
T Consensus 794 ~~Lg~~~sv~~~~wP~~d 811 (880)
T 4arc_A 794 QELKGEGDIDNAPWPVAD 811 (880)
T ss_dssp HHTTCSSCGGGSCCCCCC
T ss_pred HHcCCCCeEEeCCCCCCC
Confidence 9998654 457899876
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-74 Score=651.90 Aligned_cols=486 Identities=17% Similarity=0.198 Sum_probs=391.4
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc---------------C-
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH---------------K- 67 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~---------------g- 67 (528)
++|+|+.|||||||.|||||+++++++|+++||.||+ |++|++++|||+||+|++..|++. |
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~--G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi 111 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ--GYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKV 111 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHT--TCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCC
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcC--CCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999 999999999999999999887642 3
Q ss_pred --------CCHHHHHHHHHHHHHHHHhhcCcccC--CCCCCCC--HHHHHHHHHHHHHHhhCCCeeccceeeccccCcCc
Q psy4049 68 --------LETIDFCNKISDQYKLMFKTYDIEYT--HYVRTTS--EHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEES 135 (528)
Q Consensus 68 --------~~~~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~--~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~ 135 (528)
.++.++++++.+.+++++++||+++| +.+.|++ +.|.+.++++|.+|+++|+||++.++++|||.|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T 191 (967)
T 1wz2_A 112 PEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGT 191 (967)
T ss_dssp CHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCC
Confidence 35788999999999999999999876 7778999 99999999999999999999999999999999999
Q ss_pred cccccccccCCCc-----------------------------------------h---------h----h----------
Q psy4049 136 FLLEHQIRPDEKN-----------------------------------------E---------E----E---------- 151 (528)
Q Consensus 136 ~l~~~~v~~~~~~-----------------------------------------~---------~----~---------- 151 (528)
+|++.++++.+.. + + +
T Consensus 192 ~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~ 271 (967)
T 1wz2_A 192 PLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (967)
T ss_dssp BCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHH
T ss_pred CcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHH
Confidence 9999988653210 0 0 0
Q ss_pred --hhh------------------------hhc-----------------------------------c----------C-
Q psy4049 152 --SFL------------------------LEH-----------------------------------Q----------I- 159 (528)
Q Consensus 152 --~~~------------------------~~~-----------------------------------~----------~- 159 (528)
.+. ++. . +
T Consensus 272 ~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l 351 (967)
T 1wz2_A 272 KLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDI 351 (967)
T ss_dssp HHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCC
T ss_pred HHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCC
Confidence 000 000 0 0
Q ss_pred --------------------------------C---CCC----------------C---------CC-------------
Q psy4049 160 --------------------------------R---PDE----------------K---------NE------------- 166 (528)
Q Consensus 160 --------------------------------~---~~~----------------~---------g~------------- 166 (528)
. .|. + |.
T Consensus 352 ~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~i~~~L 431 (967)
T 1wz2_A 352 DPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEM 431 (967)
T ss_dssp CCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTTTHHHH
T ss_pred chhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHHHHHHH
Confidence 0 000 0 10
Q ss_pred -------------CcccccCCCCCcEEe-eeceeeeeccc--cHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccc
Q psy4049 167 -------------GQYVSIESNQPVEWV-EEQNYMFKLSN--YINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISV 230 (528)
Q Consensus 167 -------------~~~~~~~~g~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~i 230 (528)
..|+|++||.+++++ .++|||+++++ +++.+.++++.. .|.|+..++.+.+|+++ ++||||
T Consensus 432 ~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~--~~~P~~~~~~~~~~l~~-l~DW~I 508 (967)
T 1wz2_A 432 LEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERM--KILPETRRAQFEAIIDW-LDKKAC 508 (967)
T ss_dssp HHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTS--CEESSTTHHHHHHHHHS-CCEECC
T ss_pred HhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhcc--EeeCccccchHHHhhhc-ccCeee
Confidence 147788999999998 69999999984 899999999766 49999999999999986 999999
Q ss_pred cccCCCcccccccCCCCCC--------eEEEeccchhhhhh------------------------------------hhc
Q psy4049 231 SRPKARVHWGIPVPDDDTQ--------TIYVWLDALMNYLT------------------------------------VSG 266 (528)
Q Consensus 231 sR~~~~~~WG~~ip~~~~~--------~~~~wfds~~~~~~------------------------------------~~~ 266 (528)
|||+ +||+|||.++.. ++|+|+++...++. .+|
T Consensus 509 SRqr---~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG 585 (967)
T 1wz2_A 509 ARKI---GLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTG 585 (967)
T ss_dssp CBSS---SSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHT
T ss_pred ccCC---CCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccCccccchhhcC
Confidence 9996 899999975433 33444433221111 123
Q ss_pred CCC---------CCC-CCccceEeeecccchhhhHHHHHHhhc-CCC-CCcEEEEeeeeeeCCCcccccCCCccCcchhh
Q psy4049 267 YPD---------FHT-WPPHIQILGKDILKFHGIYWPAFLIAA-GLE-PPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKL 334 (528)
Q Consensus 267 ~~~---------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~-~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~ 334 (528)
+|. |+. ||.|+|++|+||++||++++.++..++ +.. .|+++++|||++.+|+|||||+||+|+|.|++
T Consensus 586 ~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i 665 (967)
T 1wz2_A 586 IPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAI 665 (967)
T ss_dssp CCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHH
T ss_pred CCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHH
Confidence 331 344 799999999999999999987766553 443 45899999999999999999999999999999
Q ss_pred hhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHH
Q psy4049 335 SDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTEL 414 (528)
Q Consensus 335 ~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 414 (528)
++||+|++|||+++.+++++|++|+.+.+.+.. ++.++++|++.++.... .+.. ......|+|+
T Consensus 666 ~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~--~~l~rl~n~~~~~~~~~------~~~~--------~~~~~~D~~i 729 (967)
T 1wz2_A 666 EENGADVVRLYIMSLAEHDSDFDWRRKEVGKLR--KQIERFYELISQFAEYE------VKGN--------VELKDIDRWM 729 (967)
T ss_dssp HTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHH--HHHHHHHHHHHHHHSSC------CCCC--------CCCCHHHHHH
T ss_pred HHhChHHHHHHHHhCCCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHhcCC------CCCc--------ccCCHHHHHH
Confidence 999999999999987888999999999998763 46889999987765321 1110 0135679999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccchH
Q psy4049 415 IENCQTLHEDVKLHYSEFNFYKGVDSI-ILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPK 493 (528)
Q Consensus 415 l~~l~~~~~~v~~~~e~~~~~~~~~~l-~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~ 493 (528)
+++++.+.+++.++|++|+++.|+..+ +.+.+.+|+|++..++. .+ .++..++.++|+.+++||+|||||
T Consensus 730 l~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~------~~---~~~~~~l~~~l~~l~~LLaP~~P~ 800 (967)
T 1wz2_A 730 LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR------DD---EAKRYVLRTLADVWVRLMAPFTPH 800 (967)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC------CC---HHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccch------hH---HHHHHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999999866 57778899999887631 11 245567889999999999999999
Q ss_pred HHHHHHHHcCCCC--ccccccccc--ccCccch
Q psy4049 494 LADKLLTRLGIPT--NERLWDNMR--FSDNDMF 522 (528)
Q Consensus 494 ~~e~l~~~l~~~~--~~~~w~~~~--~~~~~~~ 522 (528)
++|+||+.|+... ....||..+ .++.++.
T Consensus 801 ~aEeiw~~L~~~~sv~~~~wP~~~~~~~d~~~~ 833 (967)
T 1wz2_A 801 ICEELWEKLGGEGFVSLAKWPEPVEEWWNETIE 833 (967)
T ss_dssp HHHHHHHHSSCCSCGGGSCCCCCCSSCCCHHHH
T ss_pred HHHHHHHhcCCCCceeccCCCCCCcccCCHHHH
Confidence 9999999997533 457899876 3454443
No 14
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=5.5e-73 Score=629.32 Aligned_cols=456 Identities=20% Similarity=0.261 Sum_probs=374.0
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++||+.+||||||.|||||+++++++|+++||+||+ ||+|.+++|||+||+||+.+|.+.|++|.++++++.+.|+
T Consensus 32 ~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~--G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~ 109 (878)
T 2v0c_A 32 RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ--GYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAK 109 (878)
T ss_dssp --EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHH--TCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhc--CCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccC--CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCC
Q psy4049 83 LMFKTYDIEYT--HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIR 160 (528)
Q Consensus 83 ~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 160 (528)
+++++|||++| +++.|+++.|.+.++++|.+|+++|+||+++++++||+.|+++|++.+++..
T Consensus 110 ~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g--------------- 174 (878)
T 2v0c_A 110 ESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEG--------------- 174 (878)
T ss_dssp HHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETT---------------
T ss_pred HHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcC---------------
Confidence 99999999887 8889999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCcccccC-CCCCcEEeeeceeeeeccccHHHHHHHHHhCC-----------------------------C----
Q psy4049 161 PDEKNEGQYVSIE-SNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE-----------------------------D---- 206 (528)
Q Consensus 161 ~~~~g~~~~~~~~-~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------------~---- 206 (528)
.|++ ||.+++.+..+||||++++|.+.+.++++... .
T Consensus 175 ---------~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v 245 (878)
T 2v0c_A 175 ---------RCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPV 245 (878)
T ss_dssp ---------EESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEE
T ss_pred ---------CCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEE
Confidence 3888 99999999999999999988776655432100 0
Q ss_pred --------------------------------------------------------------------------------
Q psy4049 207 -------------------------------------------------------------------------------- 206 (528)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (528)
T Consensus 246 ~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~ 325 (878)
T 2v0c_A 246 FTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTA 325 (878)
T ss_dssp EESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEEC
T ss_pred EeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEe
Confidence
Q ss_pred -----------------------------------cccc------------------------------hhhHHHHHHHH
Q psy4049 207 -----------------------------------VVKP------------------------------KKFYNQLRNMC 221 (528)
Q Consensus 207 -----------------------------------~~~p------------------------------~~~~~~~~~~l 221 (528)
.+.| ..+++.+.++|
T Consensus 326 ~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L 405 (878)
T 2v0c_A 326 DYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWL 405 (878)
T ss_dssp TTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHH
T ss_pred CcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHH
Confidence 0000 01223333444
Q ss_pred hc----------cCCCccccccCCCcccccccCC----C-----------------------------------------
Q psy4049 222 SE----------IENDISVSRPKARVHWGIPVPD----D----------------------------------------- 246 (528)
Q Consensus 222 ~~----------~~~dw~isR~~~~~~WG~~ip~----~----------------------------------------- 246 (528)
++ .++|||||||| +||+|||. +
T Consensus 406 ~~~g~~~~~v~~rlrDW~ISRQR---~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~ 482 (878)
T 2v0c_A 406 EEKGLGKGRVTYRLRDWLISRQR---YWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYET 482 (878)
T ss_dssp HHHTSEEEEEEESCCCEECEESC---SSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEE
T ss_pred HHCCCCCCceEEecccchhhccc---ccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCC
Confidence 42 37899999998 89999992 0
Q ss_pred -----------CCCeEEEeccchhhhhhhhcCCC----------CCC-CCccceEeeecccchhhh---HHHHHHhhcC-
Q psy4049 247 -----------DTQTIYVWLDALMNYLTVSGYPD----------FHT-WPPHIQILGKDILKFHGI---YWPAFLIAAG- 300 (528)
Q Consensus 247 -----------~~~~~~~wfds~~~~~~~~~~~~----------~~~-~~~di~~~G~D~~~~h~~---~~~a~~~~~~- 300 (528)
+.+||||||||++ |....++|+ ++. ||+|++++|.||...|-+ ||.+.+..+|
T Consensus 483 ~cp~cg~~~~retDtmDtwfdSsw-~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~ 561 (878)
T 2v0c_A 483 TCPKCGGPAKRDTDTMDTFFDSSW-YYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGM 561 (878)
T ss_dssp ECTTTCSEEEECCCEECHHHHHTS-HHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTS
T ss_pred cCCCCCCcceeccccccccccccc-hhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 1378999999974 444555543 123 699999999999765433 5777776665
Q ss_pred ---CCCCcEEEEeeeeee-----------------------------------------------CC-------Cccccc
Q psy4049 301 ---LEPPKSFLVHSHWTV-----------------------------------------------DG-------VKMSKS 323 (528)
Q Consensus 301 ---~~~~~~~~~hg~~~~-----------------------------------------------~g-------~KmSkS 323 (528)
..||+++++|||++- +| +|||||
T Consensus 562 ~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKS 641 (878)
T 2v0c_A 562 VKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKS 641 (878)
T ss_dssp CSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGG
T ss_pred ccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhcc
Confidence 379999999999952 88 899999
Q ss_pred CCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhh
Q psy4049 324 VGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEV 403 (528)
Q Consensus 324 ~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~ 403 (528)
+||+|+|.|++++||+|++|||+++.+++.+|++|+.+.++... ++.++++|++..............+ ..
T Consensus 642 kGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~--~~l~Rl~n~~~~~~~~~~~~~~~~~---~~---- 712 (878)
T 2v0c_A 642 KGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAW--RFLNRIYRRVAEDREALLETSGVFQ---AE---- 712 (878)
T ss_dssp GTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCCC---GG----
T ss_pred CCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHH--HHHHHHHHHHHHHHhcccccccccC---cc----
Confidence 99999999999999999999999987888999999999998763 4788888887655432100000010 11
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHH
Q psy4049 404 MFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRIC 483 (528)
Q Consensus 404 ~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l 483 (528)
.+...|+++++.++++.+.+.++|++|+|+.|++.|++|++.+|+|.+.. . . + .++.++++.+
T Consensus 713 --~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~-------~--~---~---~~l~~~l~~l 775 (878)
T 2v0c_A 713 --ALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR-------P--V---T---PVYRTAIRYY 775 (878)
T ss_dssp --GCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC-------C--S---C---HHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc-------h--h---H---HHHHHHHHHH
Confidence 23578999999999999999999999999999999999999999886531 1 0 1 3567889999
Q ss_pred HHcccccchHHHHHHHHHcCCCC--ccccccccc
Q psy4049 484 GIGLQPIVPKLADKLLTRLGIPT--NERLWDNMR 515 (528)
Q Consensus 484 ~~ll~P~~P~~~e~l~~~l~~~~--~~~~w~~~~ 515 (528)
++||+|||||++|+||+.|+ .. ....||..+
T Consensus 776 ~~LLaPf~P~~aEElw~~Lg-~~sv~~~~wP~~d 808 (878)
T 2v0c_A 776 LQMLFPFAPHLAEELWHWFW-PDSLFEAGWPELD 808 (878)
T ss_dssp HHHHTTTSHHHHHHHHHHHC-SSCGGGSCCCCCC
T ss_pred HHHHcccchHHHHHHHHHcC-CCceeecCCCCCC
Confidence 99999999999999999998 32 356898875
No 15
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-72 Score=628.16 Aligned_cols=468 Identities=18% Similarity=0.213 Sum_probs=381.6
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHc----------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH---------------- 66 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~---------------- 66 (528)
+++++|+.|||||||+|||||+++++++|+++||+||+ |++|++++|||+||+|++..|++.
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~--G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g 110 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ--GYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYK 110 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHH--TCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcC--CCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhC
Confidence 57899999999999999999999999999999999999 999999999999999999876532
Q ss_pred --------CCCHHHHHHHHHHHHHHHHhhcCcccC--CCCCCCC--HHHHHHHHHHHHHHhhCCCeeccceeeccccCcC
Q psy4049 67 --------KLETIDFCNKISDQYKLMFKTYDIEYT--HYVRTTS--EHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEE 134 (528)
Q Consensus 67 --------g~~~~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~--~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~ 134 (528)
+.++.++++++.+.+++++++|||++| ..+.|++ +.|.+.++++|.+|+++|+||+++++++|||.|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 190 (810)
T 1wkb_A 111 VPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (810)
T ss_dssp CCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence 346788999999999999999999988 7778999 9999999999999999999999999999999999
Q ss_pred ccccccccccCCCc-----------------------------------------h---------h----h---------
Q psy4049 135 SFLLEHQIRPDEKN-----------------------------------------E---------E----E--------- 151 (528)
Q Consensus 135 ~~l~~~~v~~~~~~-----------------------------------------~---------~----~--------- 151 (528)
++|++.+|++.+.. + + +
T Consensus 191 t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~ 270 (810)
T 1wkb_A 191 TPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAA 270 (810)
T ss_dssp EECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHH
T ss_pred CCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHH
Confidence 99999988653210 0 0 0
Q ss_pred ---hh------------------------h---------------------------------------------hhccC
Q psy4049 152 ---SF------------------------L---------------------------------------------LEHQI 159 (528)
Q Consensus 152 ---~~------------------------~---------------------------------------------~~~~~ 159 (528)
.+ + |..++
T Consensus 271 ~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~ 350 (810)
T 1wkb_A 271 YKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYD 350 (810)
T ss_dssp HHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCS
T ss_pred HHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcC
Confidence 00 0 00001
Q ss_pred CC------------------------------------CC----------------CC---------C------------
Q psy4049 160 RP------------------------------------DE----------------KN---------E------------ 166 (528)
Q Consensus 160 ~~------------------------------------~~----------------~g---------~------------ 166 (528)
.+ |. +| .
T Consensus 351 l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~~~i~~~ 430 (810)
T 1wkb_A 351 IDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKE 430 (810)
T ss_dssp CCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHHHHHHHH
T ss_pred CChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhHHHHHHH
Confidence 00 00 00 0
Q ss_pred --------------CcccccCCCCCcEEe-eeceeeeeccc--cHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCcc
Q psy4049 167 --------------GQYVSIESNQPVEWV-EEQNYMFKLSN--YINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDIS 229 (528)
Q Consensus 167 --------------~~~~~~~~g~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~ 229 (528)
..|+|++||.+++.+ .++|||+++++ +++.+.++++.. .|.|+..++.+.+|++. ++|||
T Consensus 431 L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~--~~~P~~~~~~~~~~l~~-l~Dw~ 507 (810)
T 1wkb_A 431 MLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERM--KILPETRRAQFEAIIDW-LDKKA 507 (810)
T ss_dssp HHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTS--EEESGGGHHHHHHHHHH-CCCEE
T ss_pred HHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhccc--EEECcchhchHHHHhhc-ccCcc
Confidence 136788999999988 79999999996 999999999776 49999999999999995 99999
Q ss_pred ccccCCCcccccccCCCC--------CCeEEEeccchhhhhh------------------------------------hh
Q psy4049 230 VSRPKARVHWGIPVPDDD--------TQTIYVWLDALMNYLT------------------------------------VS 265 (528)
Q Consensus 230 isR~~~~~~WG~~ip~~~--------~~~~~~wfds~~~~~~------------------------------------~~ 265 (528)
||||+ +||+|||.++ +.++|+|+++...++. .+
T Consensus 508 ISRq~---~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~s 584 (810)
T 1wkb_A 508 CARKI---GLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKT 584 (810)
T ss_dssp CEESS---SBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ccccC---CCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccccccCccccchhhh
Confidence 99996 8999999532 3456667665433322 12
Q ss_pred cCCC---------CCC-CCccceEeeecccchhhhHHHHHHhhc-CC-CCCcEEEEeeeeeeCCCcccccCCCccCcchh
Q psy4049 266 GYPD---------FHT-WPPHIQILGKDILKFHGIYWPAFLIAA-GL-EPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSK 333 (528)
Q Consensus 266 ~~~~---------~~~-~~~di~~~G~D~~~~h~~~~~a~~~~~-~~-~~~~~~~~hg~~~~~g~KmSkS~gn~i~~~~~ 333 (528)
|+|. ++. ||.|+|++|+||++||++++.++..++ +. +.|+++++|||++.+|+|||||+||+|+|.|+
T Consensus 585 g~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dl 664 (810)
T 1wkb_A 585 GIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDA 664 (810)
T ss_dssp SCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHH
T ss_pred CCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHH
Confidence 3321 334 799999999999999999987665553 43 34588999999999999999999999999999
Q ss_pred hhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHH
Q psy4049 334 LSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTE 413 (528)
Q Consensus 334 ~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 413 (528)
+++||+|++|||+++.+++++|++|+.+.+... .++.++++|++.++.... .+.. ......|++
T Consensus 665 i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~~------~~~~--------~~~~~~d~~ 728 (810)
T 1wkb_A 665 IEENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEYE------VKGN--------VELKDIDRW 728 (810)
T ss_dssp HHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHTCC------CCSC--------CCCCHHHHH
T ss_pred HHHcChHHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcc------Cccc--------ccCCHHHHH
Confidence 999999999999997788899999999999876 346889999887765421 1110 013467999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHHHHHHHHHHcccccch
Q psy4049 414 LIENCQTLHEDVKLHYSEFNFYKGVDSI-ILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVP 492 (528)
Q Consensus 414 ll~~l~~~~~~v~~~~e~~~~~~~~~~l-~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P 492 (528)
+++.++.+.+.+.++|++|+++.|+..+ +.+++.+|+|++..++. + + .+...++.++++.+++||+||||
T Consensus 729 ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~----~--~---~~~~~~l~~~l~~l~~lLaP~~P 799 (810)
T 1wkb_A 729 MLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR----D--D---EAKRYVLRTLADVWVRLMAPFTP 799 (810)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC----C--C---HHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCc----c--h---hHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999865 68888999999887641 1 1 11256788999999999999999
Q ss_pred HHHHHHHHHcC
Q psy4049 493 KLADKLLTRLG 503 (528)
Q Consensus 493 ~~~e~l~~~l~ 503 (528)
|++|+||+.||
T Consensus 800 ~~aEelw~~Lg 810 (810)
T 1wkb_A 800 HICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 16
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=6.8e-56 Score=460.45 Aligned_cols=405 Identities=18% Similarity=0.173 Sum_probs=270.3
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
-++|||+|+|| |++||||+|++|++|+++||+|+. ||+|.+++|+||+|++|..+|++.|.+++++++++.++|++
T Consensus 23 v~~yv~gPt~y--~~~HiGHar~~v~~D~l~R~lr~~--G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~ 98 (461)
T 1li5_A 23 VGMYVCGITVY--DLCHIGHGRTFVAFDVVARYLRFL--GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHK 98 (461)
T ss_dssp EEEEECCCBSS--SCCBHHHHHHHHHHHHHHHHHHHH--TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCC--CCCcccccHHHHHHHHHHHHHHHc--CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35899988888 899999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCccc-CCCCCCCCHHHHHHHHHHHHHHhhCCCeecc-ceeeccccCcCccccccccccCCCchhhhhhhhccCCC
Q psy4049 84 MFKTYDIEY-THYVRTTSEHHFRTVNTVWTKLKQRDSIYPN-KYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRP 161 (528)
Q Consensus 84 ~~~~l~i~~-d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 161 (528)
++++|||.+ |.++++++ |.+.+++++++|.++|++|++ ++.++||+.+- .....
T Consensus 99 ~~~~LgI~~~d~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~--~~yg~-------------------- 154 (461)
T 1li5_A 99 DFDALNILRPDMEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD--PTYGV-------------------- 154 (461)
T ss_dssp HHHHTTCCCCSBCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC--TTTTT--------------------
T ss_pred HHHHcCCCCCcccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc--ccccc--------------------
Confidence 999999997 78888776 899999999999999999999 89999998862 11111
Q ss_pred CCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCC-CcccchhhHHHHHHHHhccCCCccccccCCCcccc
Q psy4049 162 DEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNE-DVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWG 240 (528)
Q Consensus 162 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG 240 (528)
.||.+++...... ++. . +..+... ..... .. ..+-.+++. .+||
T Consensus 155 -----------lsg~~~~~l~~g~---rv~-----~-~~~k~~p~Df~lw----------k~--~~~g~~~w~---s~WG 199 (461)
T 1li5_A 155 -----------LSRQDLDQLQAGA---RVD-----V-VDDKRNPMDFVLW----------KM--SKEGEPSWP---SPWG 199 (461)
T ss_dssp -----------TTTC-------------------------CCSTTCEEEE----------EE--CCTTSCCBC---CTTC
T ss_pred -----------ccCCCHHHhhcCC---ccc-----c-hhcccCccceEEE----------cc--CCCCCCccc---CCCC
Confidence 1222211000000 000 0 0000000 00000 00 000012333 4799
Q ss_pred cccCCCCCCeEEEeccchhhh-hhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhc-CCCCCcEEEEe-eeeeeCC
Q psy4049 241 IPVPDDDTQTIYVWLDALMNY-LTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVH-SHWTVDG 317 (528)
Q Consensus 241 ~~ip~~~~~~~~~wfds~~~~-~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~~~h-g~~~~~g 317 (528)
++.|+ |+...... ...+| .+.|+|++|+|+++||+.++++++.++ |. ++.++|+| ||++++|
T Consensus 200 ~g~Pg--------Whiecsam~~~~lg------~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~~~G 264 (461)
T 1li5_A 200 AGRPG--------WHIECSAMNCKQLG------NHFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVMVDR 264 (461)
T ss_dssp SEEEC--------SSHHHHHHHHHHHC------SSEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEEETT
T ss_pred CcCCC--------ccchhHHHHHHHhC------CCceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEEECC
Confidence 99885 77543221 11122 278999999999999999999999886 76 67788888 9999999
Q ss_pred CcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcc
Q psy4049 318 VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVN 397 (528)
Q Consensus 318 ~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~ 397 (528)
+|||||+||+|+|.|++++||+|++|||+++ .+++++++|+++.+.++.+ ...+++|+++++ ....
T Consensus 265 ~KMSKS~GN~v~~~dll~~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~--~l~rl~n~~~~~-------~~~~---- 330 (461)
T 1li5_A 265 EKMSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQLNYSEENLKQARA--ALERLYTALRGT-------DKTV---- 330 (461)
T ss_dssp BCCCGGGTCCCBHHHHHTTSCHHHHHHHHHS-SCTTSCEEECHHHHHHHHH--HHHHHHHHHTTC-------CTTS----
T ss_pred eEccccCCCccChhHHhhhCCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHH--HHHHHHHHHHHh-------hcCC----
Confidence 9999999999999999999999999999997 6789999999999988644 355666665432 1100
Q ss_pred cchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHH
Q psy4049 398 RECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVT 476 (528)
Q Consensus 398 ~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l 476 (528)
.+ | .+..+.+.+.++| ++|+++.|++.|+++++.+|+|++. + ...+..+...+
T Consensus 331 ----------~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~--~--------~~~~~~~~~~~ 384 (461)
T 1li5_A 331 ----------AP-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE--D--------MAAANAMASHL 384 (461)
T ss_dssp ----------CC-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH--C--------HHHHHHHHHHH
T ss_pred ----------CH-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc--c--------HHHHHHHHHHH
Confidence 01 1 2556778889999 8999999999999999999999965 1 11222333444
Q ss_pred HHHHHHHHHcc-ccc--c-------h---HHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 477 FEVLRICGIGL-QPI--V-------P---KLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 477 ~~~l~~l~~ll-~P~--~-------P---~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
..++.+|+++. .|. + + ...+.+.+.+..+++.++|+.+|.||++|.+..|
T Consensus 385 ~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi 447 (461)
T 1li5_A 385 RKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGI 447 (461)
T ss_dssp HHHHTTTTCSCSCHHHHC---------------------------------------------
T ss_pred HHHHHHcCCCccChhhhhhcccccccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC
Confidence 45555555421 111 1 1 2245566777778889999999999999988765
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=6.8e-56 Score=455.99 Aligned_cols=415 Identities=16% Similarity=0.165 Sum_probs=270.6
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecC----------CCcchHHHHHHHHcCCCHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGT----------DEHGLKIQNAAIKHKLETIDF 73 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~----------d~~g~~i~~~a~~~g~~~~~~ 73 (528)
-++|||+|+|| |.+||||+|++|++|+++||+|++ ||+|.|++|+ |+||+||+.+|++.|++|+++
T Consensus 43 v~~YvcgPTvY--g~~HIGHar~~v~~Dvl~R~lr~~--Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~ 118 (501)
T 3sp1_A 43 VKVYACGPTVY--NYAHIGNFRTYIFGDLLIKTLRFL--GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEI 118 (501)
T ss_dssp EEEEECCCBCS--SCCCHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEBCSCCC-------------------CCHHHH
T ss_pred ceEEeCCCcCC--CCcchhhhHHHHHHHHHHHHHHHc--CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHH
Confidence 36899998888 899999999999999999999999 9999999765 555999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhh
Q psy4049 74 CNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESF 153 (528)
Q Consensus 74 ~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~ 153 (528)
++++.+.|++++++|||.+|.+.. ..+.|...++++|.+|+++|++|++++.++||+.+ |.....+++..
T Consensus 119 a~~~~~~f~~d~~~Lgi~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--f~~yG~ls~~~------- 188 (501)
T 3sp1_A 119 SEFFTEAFFNDCRKLNIVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--FKSYGEMAGID------- 188 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--CTTTTTTTC---------
T ss_pred HHHHHHHHHHHHHHcCCCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--cCCccccCCCC-------
Confidence 999999999999999999987754 46789999999999999999999999999999986 33223333220
Q ss_pred hhhccCCCCC-CCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCC---cccchhhHHHHHHHHhccCCCcc
Q psy4049 154 LLEHQIRPDE-KNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNED---VVKPKKFYNQLRNMCSEIENDIS 229 (528)
Q Consensus 154 ~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~l~~~~~dw~ 229 (528)
. + ....|..++.... +.... .|.+...+ ..+.+.|.
T Consensus 189 ---------~~~------~~~~g~r~~~~~~------------------K~~p~Df~lWk~~p~~-------~~~~~~W~ 228 (501)
T 3sp1_A 189 ---------LID------KDMTLPRVDVDKF------------------KRNKTDFVLWFTNSKF-------KDQEMKWD 228 (501)
T ss_dssp ------------------------------C------------------CSSTTCEEEEEECCC------------CCBC
T ss_pred ---------hhh------hhccCCccCcccc------------------cCCchhhHhcCCCCCC-------CCCCceec
Confidence 0 0 0011211111000 00000 01110000 00122232
Q ss_pred ccccCCCcccccccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEE
Q psy4049 230 VSRPKARVHWGIPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFL 308 (528)
Q Consensus 230 isR~~~~~~WG~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~ 308 (528)
.+||...|+ |. ++..+....+|. +.|||++|+|++|||+.++++++.++..+|+.++|
T Consensus 229 -------spwG~GrPG--------WhiEcsam~~~~lg~------~~DIH~gG~DLifpHheneiAqs~a~~g~~~~~~w 287 (501)
T 3sp1_A 229 -------SPWGFGYPS--------WHLECAAMNLEYFKD------ALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVF 287 (501)
T ss_dssp -------CTTCSEEEC--------HHHHHHHHHHHHTTT------CCCEEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEE
T ss_pred -------CCCCCCCCC--------chHHHHHHHHHHcCC------CceEEeeccccccchHHHHHHHHHHccCCCCCeEE
Confidence 256666553 32 111111112222 67999999999999999999999987667999999
Q ss_pred Ee-eeeeeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHh
Q psy4049 309 VH-SHWTVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNA--ELANTLGNLLNRCLS 384 (528)
Q Consensus 309 ~h-g~~~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~--~l~~~l~n~~~r~~~ 384 (528)
+| ||++++|+|||||+||+|+|.|++++ ||+|++|||+++. +++++++|+.+.++++.+. ++.+++++++.++..
T Consensus 288 ~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~ 366 (501)
T 3sp1_A 288 VHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDP 366 (501)
T ss_dssp EEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred EEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999998 9999999999976 7899999999999987654 558888888776432
Q ss_pred cccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhHhhhccCccccccc
Q psy4049 385 KSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYS-EFNFYKGVDSIILVLHLANKFIDTTKPWTLRKE 463 (528)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e-~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~ 463 (528)
.......... ... + ...+..+.+.+.++|+ |||++.|+..|+++++.+| + .
T Consensus 367 ~~~~~~~~~~------------~~~-~---~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~--~---~------- 418 (501)
T 3sp1_A 367 VDLNTLNKDL------------KNF-G---FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN--L---S------- 418 (501)
T ss_dssp HHHHHHHSCT------------TSC-S---SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS--S---C-------
T ss_pred hhcccccccc------------cch-h---hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc--c---C-------
Confidence 1100000000 000 0 1224456677878886 8999999999999998653 0 0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHcc-----------cccchHHHHHHHHHcCCCCcccccccccccCccchhcccC
Q psy4049 464 NKIEELNLVLGVTFEVLRICGIGL-----------QPIVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLIN 527 (528)
Q Consensus 464 ~~~~~~~~~~~~l~~~l~~l~~ll-----------~P~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~~ 527 (528)
...+. ..+..+..+|+++. ...++...+.+.+.+..+++.++|+.+|.||++|.+..|.
T Consensus 419 --~~~~~---~~~~~~~~vlGl~~~~~~~~~~~~~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iRd~L~~~Gi~ 488 (501)
T 3sp1_A 419 --FVSKL---RLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFV 488 (501)
T ss_dssp --HHHHH---HHHHHHHHHHCCCHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred --HHHHH---HHHHHHHHHcCCCcccchhhcccccchhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcE
Confidence 11122 22223344444332 1235667888888888888999999999999999887663
No 18
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2e-54 Score=443.66 Aligned_cols=404 Identities=18% Similarity=0.167 Sum_probs=260.9
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLM 84 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 84 (528)
++|||+|+|| |.+||||+|++|++|+++||+|++ ||+|.+++|+||+|+||+.+|++.|.+++++++++.+.|+++
T Consensus 27 ~~YvcGPtvy--~~~HIGHaR~~v~~Dvl~R~lr~~--Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 27 KLYVCGMTVY--DYMHIGHGRSWIIFDMVVRYLRMR--GYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp EEEECCCBTT--SCCBHHHHHHHHHHHHHHHHHHHT--TCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcCC--CCCchhhhHHHHHHHHHHHHHHHc--CCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5788877666 599999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCCC-CCCCHHHHHHHHHHHHHHhhCCCeecc-ceeeccccCcCccccccccccCCCchhhhhhhhccCCCC
Q psy4049 85 FKTYDIEYTHYV-RTTSEHHFRTVNTVWTKLKQRDSIYPN-KYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPD 162 (528)
Q Consensus 85 ~~~l~i~~d~~~-~t~~~~~~~~~~~~~~~L~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (528)
+++|||.+|.+. +++ .|.+.+++++++|+++|++|++ .+.++||+.+... ...+++. +
T Consensus 103 ~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~--yg~Ls~~----------------~ 162 (462)
T 3tqo_A 103 EKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKD--YGKLSHR----------------H 162 (462)
T ss_dssp HHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTT--TTTTTTC----------------S
T ss_pred HHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccc--cccccCC----------------C
Confidence 999999997553 555 5999999999999999999999 6899999986421 1222221 0
Q ss_pred CCCCCcccccCCCCCcEEee--eceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccc
Q psy4049 163 EKNEGQYVSIESNQPVEWVE--EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWG 240 (528)
Q Consensus 163 ~~g~~~~~~~~~g~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG 240 (528)
.+ ....|..+.... ....-|.| |.+.. .|.+.|. .+||
T Consensus 163 ~~------~~~~g~r~~~~~~K~~p~DF~L-----------------WK~~k----------~~ep~W~-------spwG 202 (462)
T 3tqo_A 163 LD------ELQAGARVEVSDSKRDPLDFVL-----------------WKKAK----------PGEPKWD-------SPWG 202 (462)
T ss_dssp CC------------------CCSSTTCEEE-----------------EEECC----------TTSCCBC-------CTTC
T ss_pred hH------HhhccCccccccccCCccccce-----------------eeecC----------CCCCccc-------CCCC
Confidence 00 000111110000 00000000 11100 0122232 2465
Q ss_pred cccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCCC
Q psy4049 241 IPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDGV 318 (528)
Q Consensus 241 ~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g~ 318 (528)
...|+ |- +...+-...+|. +.|||.+|.|++|||+.+..++..++...|+.++|+| |+++++|+
T Consensus 203 ~GrPG--------WHiEcsam~~~~lG~------~~dih~gG~Dl~FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~ 268 (462)
T 3tqo_A 203 EGRPG--------WHIECSAMSSSILGQ------PFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKE 268 (462)
T ss_dssp SEEEC--------HHHHHHHHHHHHHCS------SEEEEEEEGGGTTTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTE
T ss_pred CCCCC--------CceehHHHHHHhcCC------CeEEEccccccccHHHHhHHHHHHHHcCCCcceEEEEccEEecCCc
Confidence 55553 22 222222233344 6899999999999999999999987644589999999 68899999
Q ss_pred cccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccc
Q psy4049 319 KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNR 398 (528)
Q Consensus 319 KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~ 398 (528)
|||||+||+|++.|++++||+|++|||+++. +++++++|+.+.++++.+ ..+++++++.++... .+
T Consensus 269 KMSKSlGN~i~~~dll~~~g~dalR~~lls~-~yr~~l~fs~~~l~~a~~--~l~rl~~~~~~~~~~-------~~---- 334 (462)
T 3tqo_A 269 KMSKSLGNIISIREALKESDVEVLRYFLLSG-HYRNPLSYSKENLENGRL--ALERFYLALRGLPVV-------NH---- 334 (462)
T ss_dssp ECCTTTTCCCBHHHHHHHSCHHHHHHHHHHS-CTTSCEEECHHHHHHHHH--HHHHHHHHHTTCCC--------------
T ss_pred CccccCCCcccHHHHHhhcChHHhhhhhccC-CCCCCcCcCHHHHHHHHH--HHHHHHHHHHHhhhc-------cc----
Confidence 9999999999999999999999999999975 689999999999998743 467777776432110 00
Q ss_pred chhhhccCCChhHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhHhhhccCcccccccCcHHHHHHHHHHHH
Q psy4049 399 ECYEVMFTKEPVLTELIENCQTLHEDVKLHYS-EFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTF 477 (528)
Q Consensus 399 ~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e-~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~~~~~~~~~~~l~ 477 (528)
..+..+.+.+.++|+ |||++.|+..|+++++.+|.+++... ...+..+...+.
T Consensus 335 -----------------~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~---------~~~~~~~~~~~~ 388 (462)
T 3tqo_A 335 -----------------EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ---------IEKAAVLAAELK 388 (462)
T ss_dssp --------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc---------HHHHHHHHHHHH
Confidence 012345567778886 89999999999999999999875421 122233334444
Q ss_pred HHHHHHHHccc-c----------cchHHHHHHHHHcCCCCcccccccccccCccchhccc
Q psy4049 478 EVLRICGIGLQ-P----------IVPKLADKLLTRLGIPTNERLWDNMRFSDNDMFNDLI 526 (528)
Q Consensus 478 ~~l~~l~~ll~-P----------~~P~~~e~l~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 526 (528)
.+..+|+++.. | +.+...+.+.+.+..+++.++|..+|.||++|.+..|
T Consensus 389 ~~~~vlg~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi 448 (462)
T 3tqo_A 389 CLGNIFGLLQYSPEQFLQGAKKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGV 448 (462)
T ss_dssp HHHGGGTCSCSCHHHHC-------------------------------------------
T ss_pred HHHHhcCCCccchhhhhhccccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCc
Confidence 44444444321 1 1224566777888888899999999999999988765
No 19
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-51 Score=424.50 Aligned_cols=331 Identities=17% Similarity=0.146 Sum_probs=243.0
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
.++|||+|+| +|++||||+|++|++|+++||+|++ ||+|.+++|+||+|++|+.+|++.|.+++++++++.+.|++
T Consensus 40 v~~y~~gPt~--yg~~HiGHar~~v~~DvlaR~lr~~--G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~ 115 (414)
T 3c8z_A 40 ATMYVCGITP--YDATHLGHAATYLTFDLVHRLWLDA--GHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRE 115 (414)
T ss_dssp EEEEECCCCT--TSCCBHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ceEEeCCCcC--CCCcCccccHHHHHHHHHHHHHHHc--CCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3578886665 5899999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCcc-cCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccc----eeeccccCcCccccccccccCCCchhhhhhhhcc
Q psy4049 84 MFKTYDIE-YTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK----YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQ 158 (528)
Q Consensus 84 ~~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~----~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 158 (528)
++++|||. +|.|++|++ |.+.+++++.+|+++|++|+++ +.++|+... +- .
T Consensus 116 ~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~--~~------~-------------- 171 (414)
T 3c8z_A 116 DMAALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA--TA------Q-------------- 171 (414)
T ss_dssp HHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS--ST------T--------------
T ss_pred HHHHcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh--hh------h--------------
Confidence 99999999 999988876 8899999999999999999987 555554431 10 0
Q ss_pred CCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcc
Q psy4049 159 IRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH 238 (528)
Q Consensus 159 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~ 238 (528)
.|. .++.. .+.+..++.... ..+... -.....|+ .-
T Consensus 172 -----~g~------l~~~~----------------~~~~~~~~~~~~--~~~~~~-------~k~~~~D~--------~l 207 (414)
T 3c8z_A 172 -----FGY------ESGYD----------------RDTMLTLFAERG--GDPDRP-------GKSDQLDA--------LL 207 (414)
T ss_dssp -----TTT------TTCCC----------------HHHHHHHHHHTT--CCTTCT-------TCSSTTCE--------EE
T ss_pred -----hHh------hcCCC----------------HHHHHHHHhhcc--cccccc-------ccCCcchh--------hh
Confidence 000 01100 112222221110 000000 00001121 24
Q ss_pred cccccCCCCCCeEEEeccchhhhhhhhcCCCC--------CC-C--CccceEeeecccchhhhHHHHHHhhc-CCCCCcE
Q psy4049 239 WGIPVPDDDTQTIYVWLDALMNYLTVSGYPDF--------HT-W--PPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKS 306 (528)
Q Consensus 239 WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~--------~~-~--~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~ 306 (528)
||++.|+++ .| +|.++. |.|.| .. | |.|+|++|+||++||+.++++++.++ |.+++.+
T Consensus 208 Wk~~~pg~~-----~W-da~~g~----g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~ 277 (414)
T 3c8z_A 208 WRAERPGEP-----SW-PSPFGR----GRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFAR 277 (414)
T ss_dssp EEECCTTSC-----CB-CCTTCS----EEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEE
T ss_pred cCCCCCCCC-----CC-CCCCCC----CCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcCe
Confidence 998888754 37 666543 22221 11 3 78999999999999999999999987 7778999
Q ss_pred EEEe-eeeeeCCCcccccCCCccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4049 307 FLVH-SHWTVDGVKMSKSVGNVVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLS 384 (528)
Q Consensus 307 ~~~h-g~~~~~g~KmSkS~gn~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~ 384 (528)
+|+| |+++++|+|||||+||+|+|.|++++ ||+|++|||+++ ++++++++|+++.+.+..+ ..++++|+++|+.
T Consensus 278 ~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~--~l~~l~n~~~~~~- 353 (414)
T 3c8z_A 278 HYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANA--RLARWRSATALPE- 353 (414)
T ss_dssp EEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHH--HHHHHHHHHTSSC-
T ss_pred EEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHH--HHHHHHHHHHhcc-
Confidence 9999 89999999999999999999999999 999999999998 7789999999999998754 3678888865430
Q ss_pred cccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhH
Q psy4049 385 KSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHY-SEFNFYKGVDSIILVLHLANK 450 (528)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~~~~~l~~~~~~~n~ 450 (528)
+ + .+..+.+++.++| ++|++++|++.|++|++.+|+
T Consensus 354 ------~--~----------------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 354 ------A--P----------------------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp ------B--S----------------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred ------c--h----------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0134567788898 799999999999999999988
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=2e-43 Score=379.33 Aligned_cols=403 Identities=15% Similarity=0.120 Sum_probs=282.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHH-----------------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKI----------------------- 59 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i----------------------- 59 (528)
.+++.|..+.|||||++||||+|++|++|+++|+++.. ||+|.++.+++|+|.++
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~--G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~ 195 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL--GYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRE 195 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc--CCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcc
Confidence 46788999999999999999999999999999999999 99999999999987763
Q ss_pred ----------------HHHHHHcC--------------------CCHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHH
Q psy4049 60 ----------------QNAAIKHK--------------------LETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHH 103 (528)
Q Consensus 60 ----------------~~~a~~~g--------------------~~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~ 103 (528)
...+++.+ ..++++++.+.+.|++++++|||++|.|.++++..+
T Consensus 196 ~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~ 275 (629)
T 2zue_A 196 RGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVR 275 (629)
T ss_dssp HTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHH
T ss_pred cccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCcccc
Confidence 22233222 333889999999999999999999999988888777
Q ss_pred HHHHHHHHHHHhhCCCee---ccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEE
Q psy4049 104 FRTVNTVWTKLKQRDSIY---PNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEW 180 (528)
Q Consensus 104 ~~~~~~~~~~L~~~g~iy---~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 180 (528)
...++++++.|.++|++| +++..+.+|..+..+-.+..+ |.. .+....|..
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~----------------------~~~-v~~ksdG~~--- 329 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN----------------------PIL-VLRRSDGTA--- 329 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC----------------------CEE-EEECTTSCB---
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc----------------------Cce-EEEecCCcc---
Confidence 999999999999999999 344556666665554211110 000 000011111
Q ss_pred eeeceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhcc-CCCccccccCCCcccccccCC---CCCCeEEEecc
Q psy4049 181 VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEI-ENDISVSRPKARVHWGIPVPD---DDTQTIYVWLD 256 (528)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~-~~dw~isR~~~~~~WG~~ip~---~~~~~~~~wfd 256 (528)
.|+.+ + +.-.+.+-. .+.|+- ..+.. .+.| +|. +||+++|+ ..+.++|||
T Consensus 330 ----~Y~~~-----D-iay~~~K~~-ll~~~f-------r~~~~~~~~~-~~~-----~wG~~~Pg~~~~~d~~IyV~-- 383 (629)
T 2zue_A 330 ----TYTGK-----D-IAYHLWKFG-KIDVDL-------LYKEWDSTTW-TTA-----PDGKSMPNKFGNANIVINVI-- 383 (629)
T ss_dssp ----CHHHH-----H-HHHHHHHTT-CSCCCC-------EEEECSSSCE-EEE-----EEEEECTTSSCCCSEEEEEE--
T ss_pred ----ccchh-----h-HHHHHHHhh-cccccc-------cCCccccccc-ccC-----CCCCCCCCccCCCCcEEEEE--
Confidence 11110 1 100000000 000000 00000 1223 333 69999995 445555555
Q ss_pred chhhhhhhhcCCCCCCCCccceEeeecccc-hhhhHHHHHHhhcCCCC-C--cEEEEeeeeeeCCCcccccCC--CccCc
Q psy4049 257 ALMNYLTVSGYPDFHTWPPHIQILGKDILK-FHGIYWPAFLIAAGLEP-P--KSFLVHSHWTVDGVKMSKSVG--NVVDP 330 (528)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~-~--~~~~~hg~~~~~g~KmSkS~g--n~i~~ 330 (528)
|.||.. |-.+ .+.+.++|+++ . -.+..||+|+++|+|||||+| |+|++
T Consensus 384 ------------------------g~~q~~~~~~l--~~~l~~lG~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l 437 (629)
T 2zue_A 384 ------------------------GAEQKHPQLAI--KYALQLLGFEDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTV 437 (629)
T ss_dssp ------------------------EGGGHHHHHHH--HHHHHHTTCHHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBH
T ss_pred ------------------------eCcHhhHHHHH--HHHHHHcCCCCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeH
Confidence 444432 1122 24556778754 2 246777999999999999999 99999
Q ss_pred chhhhh---------------------------cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4049 331 MSKLSD---------------------------FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCL 383 (528)
Q Consensus 331 ~~~~~~---------------------------~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~ 383 (528)
+|++++ +|+|++||++++.. ++++++|+++.+.+. ++++.++++|++.|++
T Consensus 438 ~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~-~~~~~~Fd~d~~~~~-~~~t~~ylqYa~aRi~ 515 (629)
T 2zue_A 438 DEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYS-PDKKIIFRWEDVLNF-EGESAPYIQYAHARCS 515 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSC-TTSCEECCHHHHSCC-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcC-CCCCCeecHHHHHHH-hcCchHHHHHHHHHHH
Confidence 999998 99999999999865 589999999999876 3457889999999999
Q ss_pred hcccCCCCCCCCc------ccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCc
Q psy4049 384 SKSINPDNVNPLV------NRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKP 457 (528)
Q Consensus 384 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~ 457 (528)
+++.+........ ....+ ....+.+..++..+.++++.+.+++++++|+.++.++++++..+|+||+.++
T Consensus 516 Silrka~~~~~~~~~~~~~~~~~~---~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~- 591 (629)
T 2zue_A 516 SILRKAEEEGIKVDPETLFKNADF---TKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHP- 591 (629)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHCCC---SSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhhhccccccccccccccccc---cCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9875421111000 00011 0124678899999999999999999999999999999999999999999885
Q ss_pred ccccccCc-HHHHHHHHHHHHHHHHHHHHcccccch
Q psy4049 458 WTLRKENK-IEELNLVLGVTFEVLRICGIGLQPIVP 492 (528)
Q Consensus 458 ~~l~~~~~-~~~~~~~~~~l~~~l~~l~~ll~P~~P 492 (528)
.+..++. +..+..++..+..+|+..+.+|+--.|
T Consensus 592 -vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 592 -VLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp -STTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -ccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4444333 455676777778888888887765444
No 21
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=3e-42 Score=369.41 Aligned_cols=397 Identities=14% Similarity=0.080 Sum_probs=270.6
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHH-----------------------
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQN----------------------- 61 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~----------------------- 61 (528)
++.|..+.|||||++||||+|++|++|+++|++|+. ||+|.++.+++|.|.++-.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~--G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g 181 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYA--GREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAG 181 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT--TEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHc--CCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHH
Confidence 678999999999999999999999999999999999 9999999999888754311
Q ss_pred -----------------------HHHHcCCCHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy4049 62 -----------------------AAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRD 118 (528)
Q Consensus 62 -----------------------~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g 118 (528)
.+.+.|. .+++++.+.+.|++++++|||++|.|.++++..+...+++++++|.++|
T Consensus 182 ~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG 260 (592)
T 1iq0_A 182 RAYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSP 260 (592)
T ss_dssp HHHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCC
Confidence 1133444 3889999999999999999999999988888777999999999999999
Q ss_pred Ceec---cceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHH
Q psy4049 119 SIYP---NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYIN 195 (528)
Q Consensus 119 ~iy~---~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 195 (528)
++|+ ++..+.+|..+..+-.+.++ |.. .+....|.++ |+. ++
T Consensus 261 ~~y~~~~g~~~G~~~~~~~~~g~~~~l----------------------~~~-vi~ksdG~~~-------Y~~-----~D 305 (592)
T 1iq0_A 261 HVFRPREGKYAGALVMDASPVIPGLED----------------------PFF-VLLRSNGTAT-------YYA-----KD 305 (592)
T ss_dssp TEECCSSSTTTTCEEEECTTTSCSCSC----------------------CEE-EEECTTSCBC-------HHH-----HH
T ss_pred CcccCcccCcCCCEEEechhcCCCCCC----------------------Cce-EEEecCCceE-------Eec-----ch
Confidence 9993 13334444444333111000 000 0000112211 110 01
Q ss_pred HHHHHHHh-C--CCc-ccchhhHHHHHHHHhccCCCccccccCCCcccccccCC-CCCCeEEEeccchhhhhhhhcCCCC
Q psy4049 196 DVAHWLDK-N--EDV-VKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPD-DDTQTIYVWLDALMNYLTVSGYPDF 270 (528)
Q Consensus 196 ~~~~~~~~-~--~~~-~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~-~~~~~~~~wfds~~~~~~~~~~~~~ 270 (528)
+.-.+.+ + +.. ..+ + . ..+|. |+. -..||+++|. ..+.++|||
T Consensus 306 -~a~~~~Kl~l~~~~~~~~---------~--~-~~p~~--r~~-w~~~g~~~~~~~~~~~iyV~---------------- 353 (592)
T 1iq0_A 306 -IAFQFWKMGILEGLRFRP---------Y--E-NPYYP--GLR-TSAPEGEAYTPKAEETINVV---------------- 353 (592)
T ss_dssp -HHHHHHHTTSSCCCEEEE---------C--C-CSSCT--TCE-EEEEEEEECCCCCSEEEEEE----------------
T ss_pred -HHHHHHHhhhhhhhhhhh---------h--h-cCcch--hhc-ccccCcccCCCCCCEEEEEE----------------
Confidence 0000000 0 000 000 0 0 11121 220 0137888885 556666665
Q ss_pred CCCCccceEeeecccchhhhHHHHHHhhcCCCCC---cEEEEeeeeeeCCCcccccCCCccCcchhhhh-----------
Q psy4049 271 HTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPP---KSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD----------- 336 (528)
Q Consensus 271 ~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~---~~~~~hg~~~~~g~KmSkS~gn~i~~~~~~~~----------- 336 (528)
|.||.. |---..+.+.++|++++ -.++.||+++++|+|||||+||+|+++|++++
T Consensus 354 ----------g~~h~~-~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~ 422 (592)
T 1iq0_A 354 ----------DVRQSH-PQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEE 422 (592)
T ss_dssp ----------ESSSCC-CHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHH
T ss_pred ----------eccHHH-HHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHh
Confidence 445543 11112244566787441 24566789999999999999999999999998
Q ss_pred --------------cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCcccchh
Q psy4049 337 --------------FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNV-NPLVNRECY 401 (528)
Q Consensus 337 --------------~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~-~~~~~~~~~ 401 (528)
+|+|++||++++.. +.++++|+++.+.+.. ++...++++++.|+.+++.+.... .+. +
T Consensus 423 ~~~~~~~~e~~a~~vg~~aiRyf~L~~~-~~~~~~Fd~d~~~~~~-~~~~~ylqya~aR~~sil~k~~~~~~~~-----~ 495 (592)
T 1iq0_A 423 KNPDHPDKEEAARMVALGAIRFSMVKTE-PKKQIDFRYQEALSFE-GDTGPYVQYAHARAHSILRKAGEWGAPD-----L 495 (592)
T ss_dssp HCTTCSCHHHHHHHHHHHHHHHHHHHSC-TTSCEEECHHHHHCSS-SSSHHHHHHHHHHHHHHHHHHCCCCCCC-----G
T ss_pred hCCCCCcHHHHHHhhcHHHHHHHHHhcC-CCCCCeecHHHHHHHh-ccchHHHHHHHHHHHHHHHhhcccCCCc-----c
Confidence 99999999999875 5899999999998763 346779999999999987543211 111 1
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCc-----ccccccCc-HHHHHHHHHH
Q psy4049 402 EVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKP-----WTLRKENK-IEELNLVLGV 475 (528)
Q Consensus 402 ~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~-----~~l~~~~~-~~~~~~~~~~ 475 (528)
. ...+.+..++..+.++++.+.+++++++++.++.+++++++.+|+||+..+| +.+..++. +..+..++..
T Consensus 496 ~---l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a 572 (592)
T 1iq0_A 496 S---QATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQS 572 (592)
T ss_dssp G---GCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHH
Confidence 1 1246688899999999999999999999999999999999999999999854 55554333 4456666677
Q ss_pred HHHHHHHHHHcccccch
Q psy4049 476 TFEVLRICGIGLQPIVP 492 (528)
Q Consensus 476 l~~~l~~l~~ll~P~~P 492 (528)
+..+|+..+.+|+--.|
T Consensus 573 ~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 573 LQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCcc
Confidence 77778777777654444
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=5.9e-39 Score=331.16 Aligned_cols=372 Identities=15% Similarity=0.097 Sum_probs=257.8
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHH-------HH--cCCC---H
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAA-------IK--HKLE---T 70 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a-------~~--~g~~---~ 70 (528)
++++.|..++|||+|++||||+|+++++|+++|++++. |++|.....++|.|.++-.-+ .+ .|.+ |
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~--G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p 106 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHL--GYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYP 106 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHT--TCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHc--CCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 46899999999999999999999999999999999999 999999999999999873321 11 1211 0
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHHHHHHHHHHHhh
Q psy4049 71 ----------------------------------IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQ 116 (528)
Q Consensus 71 ----------------------------------~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~ 116 (528)
+..++...+.+++++++|||.||.|+..++ .|. .+.++++.|.+
T Consensus 107 ~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~~L~~ 184 (464)
T 3fnr_A 107 EQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLESLKE 184 (464)
T ss_dssp SSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHHHHHH
Confidence 123344567899999999999998865533 344 89999999999
Q ss_pred CCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEeeeceeeeeccccHHH
Q psy4049 117 RDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYIND 196 (528)
Q Consensus 117 ~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 196 (528)
+|++|++++..++.... +- ..+ +++ +--..|.++- +
T Consensus 185 ~g~~~e~dGa~~~~~~~--~g-----~~~-----------~~v----------l~ksDG~~~Y-------~--------- 220 (464)
T 3fnr_A 185 HKGIYEQEGKIWLASSQ--KG-----DEK-----------DRV----------IIREDGRGTY-------L--------- 220 (464)
T ss_dssp TTCEEEETTEEEECGGG--GT-----CSS-----------CEE----------EECTTSCBCH-------H---------
T ss_pred CCCEEEeCCeEEEEecc--cC-----CCC-----------ceE----------EEeCCCceeh-------h---------
Confidence 99999988776653321 10 000 000 0001222210 0
Q ss_pred HHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCC-CCc
Q psy4049 197 VAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHT-WPP 275 (528)
Q Consensus 197 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~-~~~ 275 (528)
.+ .+-..+.. ++. +..
T Consensus 221 ------------t~-----DiA~~~~r----------------------------------------------~~~~~d~ 237 (464)
T 3fnr_A 221 ------------AA-----DIVYHKDK----------------------------------------------MSRGYGK 237 (464)
T ss_dssp ------------HH-----HHHHHHHH----------------------------------------------HTSSCSE
T ss_pred ------------hH-----HHHHHHHH----------------------------------------------HHcCCCe
Confidence 00 00000000 000 123
Q ss_pred cceEeeecccchhhhHHHHHHhhcCCCCCc-EEEEeeeeee--CCC--cccccCCCccCcchhhhhcCchHHHHHHHhcC
Q psy4049 276 HIQILGKDILKFHGIYWPAFLIAAGLEPPK-SFLVHSHWTV--DGV--KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREG 350 (528)
Q Consensus 276 di~~~G~D~~~~h~~~~~a~~~~~~~~~~~-~~~~hg~~~~--~g~--KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~ 350 (528)
.|++.|.||..... -..+.+.++|.+++. .+..||++.+ +|+ |||||+||+|+|.|+++++|+|++|||+++..
T Consensus 238 ~Iyv~G~dq~~~f~-~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 238 CINIWGADHHGYIP-RMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp EEEEEEGGGGGGHH-HHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred EEEEecCcHHHHHH-HHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 37889999986211 122556778987665 5566799855 775 99999999999999999999999999999765
Q ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhccCCChhHHHHHHHHHHHHHHHHHHHh
Q psy4049 351 TNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYS 430 (528)
Q Consensus 351 ~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e 430 (528)
+.++++|+++.+.+..+.++..+++++++|+.+++.+............+ ..+.+.+++++..+.++++.+.++++
T Consensus 317 -~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~---~~L~~~e~~Ll~~L~~~~~~v~~a~~ 392 (464)
T 3fnr_A 317 -CDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADL---QSLNQDGVNLLFEALNLKAVLNDAFE 392 (464)
T ss_dssp -TTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCC---TTCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred -CCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccCh---hhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999987544556668899999999987543221110000011 12334599999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhHhhhccCcccccccCc-HHHHHHHHHHHHHHHHHHHHcccccchHH
Q psy4049 431 EFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK-IEELNLVLGVTFEVLRICGIGLQPIVPKL 494 (528)
Q Consensus 431 ~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~-~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ 494 (528)
+++|++++.+|++|+..+|+||+.++. +..++. +.++..++..+ +|++.+.||.--.|..
T Consensus 393 ~~ep~~i~~yL~~La~~~n~fY~~~~v--l~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ape~ 453 (464)
T 3fnr_A 393 ARALQKIPDYLKNLAANFHKFYNENKV--VGSANENDLLKLFSLVAL--SIKTAFSLMGIEAKNK 453 (464)
T ss_dssp HTCTTHHHHHHHHHHHHHHHHHHHCCC--TTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCCSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCchHH
Confidence 999999999999999999999998863 333322 34444444444 7888888776655643
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=4.8e-35 Score=311.93 Aligned_cols=371 Identities=13% Similarity=0.068 Sum_probs=260.2
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHH-----------------------
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKI----------------------- 59 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i----------------------- 59 (528)
++++.|....|||+|++||||+|+++++|+++|+++.. ||+|.++.+++|+|.++
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~--G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~ 219 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKL--GWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHT--TCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHc--CCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHH
Confidence 46789999999999999999999999999999999999 99999999999987764
Q ss_pred -------------------------HHHHHH------cCCC-----HHHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHH
Q psy4049 60 -------------------------QNAAIK------HKLE-----TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHH 103 (528)
Q Consensus 60 -------------------------~~~a~~------~g~~-----~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~ 103 (528)
...|++ .|.+ ++++++.+.+.|++++++|||.+|.|.++++ |
T Consensus 220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~--~ 297 (607)
T 1f7u_A 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ--V 297 (607)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG--C
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch--h
Confidence 122333 3544 4778999999999999999999999876665 5
Q ss_pred H-HHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEEee
Q psy4049 104 F-RTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182 (528)
Q Consensus 104 ~-~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~ 182 (528)
. ..+..+++.|.++|++|+.++.+++... .+ .+ +. ++++ +--..|.+.
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~--~~-g~----~~----------d~~v----------~~KsDG~~~---- 346 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLIDLT--KF-NK----KL----------GKAI----------VQKSDGTTL---- 346 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEEGG--GT-CT----TT----------CEEE----------EECTTSCCC----
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEEEec--cc-CC----CC----------Ccee----------EeccCCCcC----
Confidence 4 7889999999999999998877765433 12 00 00 0000 000112211
Q ss_pred eceeeeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccccCCCcccccccCCCCCCeEEEeccchhhhh
Q psy4049 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYL 262 (528)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~ 262 (528)
+.+...- ....-.+. ++
T Consensus 347 -------------------------Y~t~Dia-~~~~k~~~---------------~~---------------------- 363 (607)
T 1f7u_A 347 -------------------------YLTRDVG-AAMDRYEK---------------YH---------------------- 363 (607)
T ss_dssp -------------------------HHHHHHH-HHHHHHHH---------------HC----------------------
T ss_pred -------------------------CCCCcHH-HHHHHHhh---------------cC----------------------
Confidence 0000000 00000000 00
Q ss_pred hhhcCCCCCCCCccceEeeecccc-hhhhHHHHHHhhcCCCCCcEEEEe-eeeeeCCCcccccCCCccCcchhhhhcCc-
Q psy4049 263 TVSGYPDFHTWPPHIQILGKDILK-FHGIYWPAFLIAAGLEPPKSFLVH-SHWTVDGVKMSKSVGNVVDPMSKLSDFTS- 339 (528)
Q Consensus 263 ~~~~~~~~~~~~~di~~~G~D~~~-~h~~~~~a~~~~~~~~~~~~~~~h-g~~~~~g~KmSkS~gn~i~~~~~~~~~~~- 339 (528)
+...|++.|.||.. |..++ +.+.++|.+. ...|.| +|..++ |||||+||+|+++|++++++.
T Consensus 364 ----------~d~~IyV~g~~q~~~f~q~~--~~~~~lG~~~-~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~ 428 (607)
T 1f7u_A 364 ----------FDKMIYVIASQQDLHAAQFF--EILKQMGFEW-AKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEK 428 (607)
T ss_dssp ----------CSEEEEECCGGGHHHHHHHH--HHHHHTTCGG-GGGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHH
T ss_pred ----------CCcEEEEEcChHhhHHHHHH--HHHHHcCCCc-CcEEEEecccccc--cccCCCCCcccHHHHHHHHHHH
Confidence 11235666777654 22222 4556778853 445888 554554 699999999999999998733
Q ss_pred ---------------------------hHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy4049 340 ---------------------------CGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNV 392 (528)
Q Consensus 340 ---------------------------d~lR~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~ 392 (528)
.++||++++. +++++++|+++.+.+..+ +...++++++.|+++++.+..+.
T Consensus 429 a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~-~~~s~~~Fd~d~~~~~~g-~t~pylqYa~aRi~SIlrka~~~ 506 (607)
T 1f7u_A 429 MHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG-KRINNYEFKWERMLSFEG-DTGPYLQYAHSRLRSVERNASGI 506 (607)
T ss_dssp HHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS-CTTCCEECCHHHHHCCSS-SSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhcc-CCCCCcccCHHHHHHHhc-cchHHHHHHHHHHHHHHHHhcCC
Confidence 5899999975 469999999999987643 45559999999999988654221
Q ss_pred CCC-cccchhhhccCCChhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHhhhccCcccccccCc-HHHHH
Q psy4049 393 NPL-VNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENK-IEELN 470 (528)
Q Consensus 393 ~~~-~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~~~~~l~~~~~~~n~y~~~~k~~~l~~~~~-~~~~~ 470 (528)
.+. .....+.. -..+.+..++..|.++++.+.+++++++|+.++.++++++..+|+||+.++. +..+.. +..+.
T Consensus 507 ~~~~~~~~~~~~--l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~V--l~~~~~~~~aRL 582 (607)
T 1f7u_A 507 TQEKWINADFSL--LKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWV--AGQTEELATARL 582 (607)
T ss_dssp CHHHHTTSCGGG--CCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCS--TTSCHHHHHHHH
T ss_pred Ccccccccchhh--cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHH
Confidence 100 00001110 1146788999999999999999999999999999999999999999999864 333222 44577
Q ss_pred HHHHHHHHHHHHHHHcccccch
Q psy4049 471 LVLGVTFEVLRICGIGLQPIVP 492 (528)
Q Consensus 471 ~~~~~l~~~l~~l~~ll~P~~P 492 (528)
.++..+..+|++.+.||+--.|
T Consensus 583 ~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 583 ALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCcc
Confidence 7777888888888887754444
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.98 E-value=2e-33 Score=297.68 Aligned_cols=269 Identities=13% Similarity=0.017 Sum_probs=176.5
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcc--hHH---HHHHHHc--CCCH-------
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHG--LKI---QNAAIKH--KLET------- 70 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g--~~i---~~~a~~~--g~~~------- 70 (528)
+.|||.+.|+|||++||||+|+++++|+++||++++ |++|.++.++||+| .++ ..++.++ |+++
T Consensus 20 ~~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~--g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~ 97 (523)
T 1irx_A 20 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDK--GYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPW 97 (523)
T ss_dssp SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTT--TCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTT
T ss_pred CeEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHc--CCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcch
Confidence 478998889999999999999999999999999999 99999999999999 666 4455555 8888
Q ss_pred ---HHHHHHHHHHHHHHHhhcCcccCCCCCCCCHHHHH-HHHHHHHHHhhCC-Ceecccee-------eccccCcCcccc
Q psy4049 71 ---IDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFR-TVNTVWTKLKQRD-SIYPNKYK-------GWYCVSEESFLL 138 (528)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~-~~~~~~~~L~~~g-~iy~~~~~-------~~~~~~~~~~l~ 138 (528)
+++++++.+.|+++|++|||++|.+ ++++. |.+ .+++++.+|.++| .||..... ..||. + +..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~ 172 (523)
T 1irx_A 98 GCHESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWP 172 (523)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCS
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-cee
Confidence 8899999999999999999999987 55543 767 8999999999999 66632111 12221 0 111
Q ss_pred ccccccCCCchhhhhhhhccCCCCCCCCCcccccCCCCCcEE---eeeceeeeeccccHHHHHHHHHhCCCcccchhhHH
Q psy4049 139 EHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEW---VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYN 215 (528)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~ 215 (528)
.. ..|..||..++. .....+.|++
T Consensus 173 ~~----------------------------~~~~~~~~~~~~~~~~~~~~~~f~~------------------------- 199 (523)
T 1irx_A 173 AM----------------------------VYCPEHRREAEIIEWDGGWKVKYKC------------------------- 199 (523)
T ss_dssp EE----------------------------EECTTTCCEECEEEECSSSCEEECC-------------------------
T ss_pred cc----------------------------ccchhhCCcccccccCCCCceeeee-------------------------
Confidence 00 012233332110 0000011111
Q ss_pred HHHHHHhccCCCccccccCCCccc-ccccCCCCCCeEEEec-cchhhhhhhhcCCCCCCCCccceEeeecccchh----h
Q psy4049 216 QLRNMCSEIENDISVSRPKARVHW-GIPVPDDDTQTIYVWL-DALMNYLTVSGYPDFHTWPPHIQILGKDILKFH----G 289 (528)
Q Consensus 216 ~~~~~l~~~~~dw~isR~~~~~~W-G~~ip~~~~~~~~~wf-ds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h----~ 289 (528)
+.|...|. ..| |...| .|- |.+ +.... +..++.++|+||+++| +
T Consensus 200 ------~~g~~~~~-------d~~~G~g~~--------~w~~d~~-~~~~~--------l~~~vd~~G~Dh~~~h~s~~~ 249 (523)
T 1irx_A 200 ------PEGHEGWV-------DIRSGNVKL--------RWRVDWP-MRWSH--------FGVDFEPAGKDHLVAGSSYDT 249 (523)
T ss_dssp ------SSSCCCEE-------CTTSSCEEE--------CHHHHHH-HHHHH--------SCCCBCCEEHHHHSTTSHHHH
T ss_pred ------cCCCcccc-------CCcCCCCCC--------CCCcchH-hhHHH--------cCCCCcCCCcCccCCCcchhh
Confidence 00111110 012 21111 110 100 00011 2445679999999999 4
Q ss_pred hHHHHHHhhcCCCCCcEEEEe-eeeeeC--CCcccccCCCccCcchhhhhcCchHHHHHHHhcCCCCCCCCcCHH-HHHH
Q psy4049 290 IYWPAFLIAAGLEPPKSFLVH-SHWTVD--GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSET-KAKN 365 (528)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~h-g~~~~~--g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~~~~~~~~~f~~~-~~~~ 365 (528)
..++++ .++|.++| .++| |+++.+ |+|||||+||+|++.++++.|++|++|+|+++.. ++++++|+.+ .+.+
T Consensus 250 ~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~-~~~~~~fs~~~~l~~ 325 (523)
T 1irx_A 250 GKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHR-PNKEIKIDLGLGILN 325 (523)
T ss_dssp HHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSC-TTSCEEECCSTTHHH
T ss_pred HHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCCCceeCcchhHHH
Confidence 556664 58898766 3555 999877 8999999999999999999999999999999754 5899999999 7776
Q ss_pred HH
Q psy4049 366 IL 367 (528)
Q Consensus 366 ~~ 367 (528)
..
T Consensus 326 ~~ 327 (523)
T 1irx_A 326 LY 327 (523)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.78 E-value=7.4e-19 Score=181.90 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=155.0
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|++++...++| ++.+.++.-+||.+.+ .-...+.+.|.++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-------~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~ 156 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-------KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLE 156 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHH
Confidence 67888899999999999999998766666 5566677777777543 114578889999999
Q ss_pred hcCcccCCCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCCC
Q psy4049 87 TYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNE 166 (528)
Q Consensus 87 ~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g~ 166 (528)
+||+.+|..++.|+ |.+...+++.+|.++|++|. .+|...+ +.. ..+. |.
T Consensus 157 wLGl~wd~~~~qSd--r~~~y~~~~~~Li~~G~AY~-----c~cs~ee--i~~--~r~~-------------------g~ 206 (553)
T 3aii_A 157 WLGVEWDETVIQSD--RMETYYEYTEKLIERGGAYV-----CTCRPEE--FRE--LKNR-------------------GE 206 (553)
T ss_dssp HHTCCCSEEEEGGG--GHHHHHHHHHHHHHTTSEEE-----ECSCHHH--HHH--HHHT-------------------TC
T ss_pred HcCCCCCCCccccc--CHHHHHHHHHHHHHcCCcee-----CCCCHHH--HHH--Hhhc-------------------CC
Confidence 99999997655555 99999999999999999995 3344321 000 0000 00
Q ss_pred CcccccCCCCCcEEeeeceeeeeccccHHHHHHHH--HhCC---CcccchhhHHHHHHHHhccCCCccccccCCCccccc
Q psy4049 167 GQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWL--DKNE---DVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGI 241 (528)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~---~~~~p~~~~~~~~~~l~~~~~dw~isR~~~~~~WG~ 241 (528)
.. .|. +.++ .+.+..|- ..+. ..+.- +..+ ..-+..+.|+.+-|.. .-++
T Consensus 207 ~~-~cR--~~s~---------------ee~l~~f~~m~~G~~g~~~lR~---k~d~-~~~n~~~~Dfvl~R~~---~~~h 261 (553)
T 3aii_A 207 AC-HCR--SLGF---------------RENLQRWREMFEMKEGSAVVRV---KTDL-NHPNPAIRDWVSMRIV---EAEH 261 (553)
T ss_dssp CC-GGG--GCCH---------------HHHHHHHHHGGGSCTTSCEEEE---CCCT-TCSSGGGTTCEEEEEC---CSCB
T ss_pred CC-ccc--cCCH---------------HHHHHHHHHHhcCCcCceEEEE---Eccc-ccCCCCCCCcEEEEec---CCCC
Confidence 00 010 0000 01111111 1110 00000 0000 0000125566665542 1111
Q ss_pred ccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccch------hhhHHHHHHhhcCCCCCcEEEEeeeeee
Q psy4049 242 PVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKF------HGIYWPAFLIAAGLEPPKSFLVHSHWTV 315 (528)
Q Consensus 242 ~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~------h~~~~~a~~~~~~~~~~~~~~~hg~~~~ 315 (528)
|. ..++.+.+ ..+++++ +.|.+.+|.+|+.. +...+..+..++|.++| ++|.++++..
T Consensus 262 p~-~Gd~~~g~-----PtYhfa~---------~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P-~y~H~~~L~~ 325 (553)
T 3aii_A 262 PR-TGTRYRVY-----PMMNFSV---------AVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPP-EFIHYGRLKM 325 (553)
T ss_dssp TT-TBTSCCEE-----ECHHHHH---------HHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCC-EEECCCCBC-
T ss_pred Cc-cCCCceee-----eeeeeee---------eeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCC-eEEEeeEEec
Confidence 11 00000110 1111221 34556666666653 33344444577888654 4563488888
Q ss_pred CCCcccccCCC---------------ccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q psy4049 316 DGVKMSKSVGN---------------VVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368 (528)
Q Consensus 316 ~g~KmSkS~gn---------------~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~~~ 368 (528)
+|+|||||+|| ..++.++.+. |.|+++|.|+++.+...++.+|+++.+++..+
T Consensus 326 ~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r 394 (553)
T 3aii_A 326 DDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNR 394 (553)
T ss_dssp ------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHH
T ss_pred CCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHH
Confidence 99999999997 6678888865 99999999999887557899999999988743
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.73 E-value=1.1e-17 Score=173.17 Aligned_cols=272 Identities=13% Similarity=0.004 Sum_probs=156.8
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|++++.+.++| ... | .++.-+||.+.. .....+.+.|.++|+
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~g--G---~fiLRieDTD~~-------------R~~~e~~~~I~edL~ 86 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYK--G---QCNLRFDDTNPV-------------KEDIEYVESIKNDVE 86 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTT--C---EEEEEECCCCGG-------------GCCHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcC--C---EEEEEECCCCch-------------hcCHHHHHHHHHHHH
Confidence 67778899999999999999999888887 334 5 555555555431 135678899999999
Q ss_pred hcCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCCC
Q psy4049 87 TYDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKN 165 (528)
Q Consensus 87 ~l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~g 165 (528)
+||+.+| ..++.++ |.+...+...+|.++|++|. .+|...+- -.. .+.+ ...|
T Consensus 87 wLGl~wde~~~~qSe--r~~~~~~~a~~Li~~G~AY~-----c~ct~eel-~~~---r~~~---------------~~~g 140 (553)
T 1qtq_A 87 WLGFHWSGNVRYSSD--YFDQLHAYAIELINKGLAYV-----DELTPEQI-REY---RGTL---------------TQPG 140 (553)
T ss_dssp HTTCCCSSSCEEGGG--GHHHHHHHHHHHHHTTSEEE-----ECCCHHHH-HHH---HCCS---------------SSCC
T ss_pred HcCCCCCCCCeehcc--cHHHHHHHHHHHHHCCCcee-----cCCCHHHH-HHH---hccc---------------ccCC
Confidence 9999996 4444455 77777788899999999995 33443210 000 0000 0000
Q ss_pred CCcccccCCCCCcEEeeeceeeeeccccHHHHH--HHHHhCCCcccch---hhH--HHHHHHHhccCCCccccccCCC--
Q psy4049 166 EGQYVSIESNQPVEWVEEQNYMFKLSNYINDVA--HWLDKNEDVVKPK---KFY--NQLRNMCSEIENDISVSRPKAR-- 236 (528)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~p~---~~~--~~~~~~l~~~~~dw~isR~~~~-- 236 (528)
... .| -..++ .+.+. +-...+. .|+ ..+ ..+ ..-+..+.|+.+-|....
T Consensus 141 ~~~-~~--R~~s~---------------ee~~~~fe~m~~G~---~~~g~~~lR~kid~-~~~~~~~~D~Vl~R~~~~~h 198 (553)
T 1qtq_A 141 KNS-PY--RDRSV---------------EENLALFEKMRAGG---FEEGKACLRAKIDM-ASPFIVMRDPVLYRIKFAEH 198 (553)
T ss_dssp CCC-TT--TTCCH---------------HHHHHHHHHHHTTC---SCTTSCEEEECSCT-TCSSGGGSSCEEEEECCCCB
T ss_pred CCC-cc--ccCch---------------hhhHhHHHHHhCCC---ccCCceEEEEeccc-ccCCCCCCCcEEEEecCCCC
Confidence 000 00 00000 00000 0011110 000 000 000 000012567776663200
Q ss_pred cccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccc---hhhhHHHHH---HhhcCCCCCcEEEEe
Q psy4049 237 VHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILK---FHGIYWPAF---LIAAGLEPPKSFLVH 310 (528)
Q Consensus 237 ~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~---~h~~~~~a~---~~~~~~~~~~~~~~h 310 (528)
-.||-+ | ....+|-.+. +.|.|.+|.+|+. .|...-+++ ..++|.+.+.+.|.+
T Consensus 199 ~~~~d~-----------w-~g~PtY~la~--------vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f 258 (553)
T 1qtq_A 199 HQTGNK-----------W-CIYPMYDFTH--------CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEF 258 (553)
T ss_dssp TTTBTS-----------C-SEEECHHHHH--------HHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEE
T ss_pred CccCCC-----------C-cccccccccc--------EEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEE
Confidence 012211 1 0011111111 4567777777776 455544444 478887644567777
Q ss_pred eeeeeCCCcccccCCC---------------ccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHH
Q psy4049 311 SHWTVDGVKMSKSVGN---------------VVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNI 366 (528)
Q Consensus 311 g~~~~~g~KmSkS~gn---------------~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~ 366 (528)
+++.++|.|||||+|| .+++.++.+. |.|++||.|+++.+....+..+++..+++.
T Consensus 259 ~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~ 330 (553)
T 1qtq_A 259 SRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESC 330 (553)
T ss_dssp CCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHH
T ss_pred EeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHH
Confidence 9999999999999987 6778888865 999999999998775444555777777764
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.66 E-value=1.9e-16 Score=170.80 Aligned_cols=275 Identities=13% Similarity=0.059 Sum_probs=155.8
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
-++|--+|.|||.|||||+|++++...++| ++...++.-+||.+.. . -...+.+.|.++|
T Consensus 66 ~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-------~~gG~fiLRIEDTD~~---------R----~~~e~~~~IledL 125 (851)
T 2hz7_A 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTAR-------QYGGQFNLRMDDTNPE---------L----ARQEYVDSIADDL 125 (851)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCCCTT---------T----CCHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECcCCcc---------c----ccHHHHHHHHHHH
Confidence 367888899999999999999999777777 4445555566665432 1 1567889999999
Q ss_pred hhcCcccC-CCCCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhccCCCCCC
Q psy4049 86 KTYDIEYT-HYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEK 164 (528)
Q Consensus 86 ~~l~i~~d-~~~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (528)
++||+.+| ..++.++ |.+...+++.+|+++|++|. .||...+-. .. .+.| ...
T Consensus 126 ~wLGl~wde~~~~qSe--r~d~y~e~a~~LI~~G~AY~-----c~ct~eel~-~~---r~~~---------------~~~ 179 (851)
T 2hz7_A 126 KWLGLDWGEHFYYASD--YFDRYYAYAEQLIRQGDAYV-----ESVSPEELS-RL---RGNA---------------TTP 179 (851)
T ss_dssp HHHTCCCTTCEEEGGG--GHHHHHHHHHHHHHTTSEEE-----ECSCHHHHH-HH---HCBT---------------TBC
T ss_pred HHcCCCCCCCcccHhh--hHHHHHHHHHHHHHCCCcEe-----ecCCHHHHH-HH---hcch---------------hcc
Confidence 99999996 4444555 88999999999999999995 344432100 00 0000 000
Q ss_pred CCCcccccCCCC-CcEEeeeceeeeeccccHHHHH--HHHHhCCCcccchhhH--HHHHHHHhccCCCccccccCCC--c
Q psy4049 165 NEGQYVSIESNQ-PVEWVEEQNYMFKLSNYINDVA--HWLDKNEDVVKPKKFY--NQLRNMCSEIENDISVSRPKAR--V 237 (528)
Q Consensus 165 g~~~~~~~~~g~-~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~p~~~~--~~~~~~l~~~~~dw~isR~~~~--~ 237 (528)
|.. | .|.. ++ .+.+. +-...+...-.+...+ ..+ ..-+..+.|+.+.|.... -
T Consensus 180 G~~---s-~~R~ls~---------------ee~l~~fe~m~~G~~~~g~~vlR~Kid~-~~~~~~~~DfVl~R~~~~~h~ 239 (851)
T 2hz7_A 180 GTP---S-PYRDRSV---------------EENLDLLRRMKAGEFADGEHVLRAKIDL-TAPNMKLRDPVLYRIVNKPHF 239 (851)
T ss_dssp CCC---C-TTTTCCH---------------HHHHHHHHHHHTTCSCTTSCEEEECCCT-TCSSGGGSSCEEEEECCCCBT
T ss_pred CCC---c-ccccCCH---------------HHHhhHHHHHhcCCcccCCeeEEEeccc-cccCCCCCCcEEEEecCCCCC
Confidence 100 0 0000 00 00000 0001110000000000 000 000012567777665210 0
Q ss_pred ccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccc------hhhhHHHHHHhhcCCCCCcEEEEee
Q psy4049 238 HWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILK------FHGIYWPAFLIAAGLEPPKSFLVHS 311 (528)
Q Consensus 238 ~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~------~h~~~~~a~~~~~~~~~~~~~~~hg 311 (528)
.||-+. .+. ..+.+++ +.|.+.+|.+|+. .|...+..+..++|.+...+.|.++
T Consensus 240 ~~gd~w-----~g~------PtYhfA~---------vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~~fa 299 (851)
T 2hz7_A 240 RTSDEW-----HIY------PAYDFEH---------PLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFG 299 (851)
T ss_dssp TTBTSC-----SEE------ECHHHHH---------HHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEEC
T ss_pred ccCCCC-----ccc------cccceee---------EeeeccCCcceeecchhhhhChHHHHHHHHHcCCCCCCCceEEE
Confidence 133221 010 1111111 2445555555544 2344455556788886434567779
Q ss_pred eeeeCCCcccccCCC---------------ccCcchhhhh-cCchHHHHHHHhcCCCCCCCCcCHHHHHHH
Q psy4049 312 HWTVDGVKMSKSVGN---------------VVDPMSKLSD-FTSCGLRYFLLREGTNHSDSNYSETKAKNI 366 (528)
Q Consensus 312 ~~~~~g~KmSkS~gn---------------~i~~~~~~~~-~~~d~lR~~~~~~~~~~~~~~f~~~~~~~~ 366 (528)
++.++|.|||||+|| ..++.++.+. |.|++||.|+++.+....+..+++..++..
T Consensus 300 hLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~ 370 (851)
T 2hz7_A 300 RRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENA 370 (851)
T ss_dssp CEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHH
T ss_pred EecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHH
Confidence 999999999999986 5667888865 999999999998775445555777777654
No 28
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.64 E-value=1.3e-15 Score=157.76 Aligned_cols=261 Identities=16% Similarity=0.117 Sum_probs=146.8
Q ss_pred EEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy4049 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMF 85 (528)
Q Consensus 6 ~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 85 (528)
++++.-.|+|||+|||||+|+++++|.++|. .. |.-++.+..+|. .. ..+.+.+.+.++|
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~--G~~iLRieDtD~------------~r----~~~~~~~~I~~~l 72 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARK--EK--GKFILRIEDTDL------------ER----SEREYEEKLMESL 72 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HT--CEEEECBCCSSC------------CS----GGGHHHHHHHHHH
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cC--CeEEEEEecCCc------------cc----cHHHHHHHHHHHH
Confidence 5678889999999999999999999999996 56 887777665541 11 2345667788999
Q ss_pred hhcCcccCCCC-------CCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccc----cccCCCchhhhh-
Q psy4049 86 KTYDIEYTHYV-------RTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQ----IRPDEKNEEESF- 153 (528)
Q Consensus 86 ~~l~i~~d~~~-------~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~----v~~~~~~~~~~~- 153 (528)
++||+.+|... -...+.+.+..+++..+|.++|.+|.. ||...+ +.... ..+.-+. -+++
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c-----~ct~ee--l~~~r~~~~~~g~~~~-yd~~~ 144 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYV-----YAYPEE--IEEMREKLLSEGKAPH-YSQEM 144 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEE-----CCCSTT--THHHHHHHHHTTCCCC-BCGGG
T ss_pred HHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEe-----cCCHHH--HHHHHHHHHhcCCCCC-CCCch
Confidence 99999998531 112334778889999999999999843 344322 11000 0000000 0000
Q ss_pred hhhccCCCCCCCCCcccccCCCCCcEEeeece---eee-eccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCcc
Q psy4049 154 LLEHQIRPDEKNEGQYVSIESNQPVEWVEEQN---YMF-KLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDIS 229 (528)
Q Consensus 154 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~---~~~-~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~ 229 (528)
.|- ...... ..--...|.+..+|.... ..+ ++ + .+. .+.+. ..+.|+.
T Consensus 145 s~r---~l~~~e--~~~~~~~G~~~~iR~k~~~~~~~~~D~----------~-~G~-~~~~~-----------~~~~D~V 196 (481)
T 2o5r_A 145 FEK---FDTPER--RREYEEKGLRPAVFFKMPRKDYVLNDV----------V-KGE-VVFKT-----------GAIGDFV 196 (481)
T ss_dssp GTT---TCCHHH--HHHHHHTTCCCEEEECCCSSCEEEEET----------T-TEE-EEECT-----------TSSCBEE
T ss_pred hhh---cCCHHH--HHHHHhcCCcceEEEEcCCCceEEEec----------c-cce-eEecc-----------ccCCCeE
Confidence 000 000000 000000122222221110 000 00 0 000 01111 1256777
Q ss_pred ccccCCCcccccccCCCCCCeEEEe-ccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEE
Q psy4049 230 VSRPKARVHWGIPVPDDDTQTIYVW-LDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFL 308 (528)
Q Consensus 230 isR~~~~~~WG~~ip~~~~~~~~~w-fds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~ 308 (528)
|-|.. |.| +| |...+... . ...+-.+.|.||.. |.--+.++..++|.++|. +
T Consensus 197 l~RsD-----G~p----------tY~~a~vvDD~-~--------~githvirG~D~~~-~t~~q~~l~~aLG~~~p~--~ 249 (481)
T 2o5r_A 197 IMRSN-----GLP----------TYNFACVVDDM-L--------MEITHVIRGDDHLS-NTLRQLALYEAFEKAPPV--F 249 (481)
T ss_dssp EECTT-----SCB----------CHHHHHHHHHH-H--------TTCSEEEEEGGGHH-HHHHHHHHHHHTTCCCCE--E
T ss_pred EEccC-----CCc----------chhhHHHHHHH-h--------CCCCeEEEChhHHH-hHHHHHHHHHHcCCCCCe--E
Confidence 77752 211 12 11111100 0 12344578999873 555666777889997774 6
Q ss_pred Ee-eee-eeCCCcccccCCCccCcchhhh-hcCchHHHHHHHhcC
Q psy4049 309 VH-SHW-TVDGVKMSKSVGNVVDPMSKLS-DFTSCGLRYFLLREG 350 (528)
Q Consensus 309 ~h-g~~-~~~g~KmSkS~gn~i~~~~~~~-~~~~d~lR~~~~~~~ 350 (528)
.| .++ ..+|+|||||.|++ +++++++ .|.|++++.+++..+
T Consensus 250 ~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 250 AHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp EEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred EEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 66 654 57899999999998 7888887 478888888887654
No 29
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.64 E-value=1.2e-15 Score=158.09 Aligned_cols=94 Identities=9% Similarity=0.011 Sum_probs=70.8
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|+++....++| ++...++.-++|.+. ..+ ...+.+.|.++|+
T Consensus 2 v~~RFAPSPtG~lHiG~artal~n~l~Ar-------~~~G~filRieDtD~---------~R~----~~~~~~~i~~dL~ 61 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVFNWLYAR-------HRGGKFILRIEDTDR---------ERS----RPEYTENILEGLQ 61 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCCSS---------SSC----CHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH-------hcCCeEEEEEeeCCc---------ccc----chHHHHHHHHHHH
Confidence 35667899999999999999999777776 334444444454432 111 2567889999999
Q ss_pred hcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 87 TYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 87 ~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
+|||.+|. .++.++ +.+..++++.+|.++|++|.
T Consensus 62 wLGl~wde~~~~QS~--r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 62 WLGLTWDEGPYFQSD--RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HTTCCCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCCCCCCCccccC--CHHHHHHHHHHHHHCCCceE
Confidence 99999985 444444 77888999999999999995
No 30
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.55 E-value=1.2e-14 Score=153.69 Aligned_cols=245 Identities=16% Similarity=0.066 Sum_probs=140.9
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||+|||||+|++++.+.++|. .. |.-++.+--+|. ..-...+.+.|.++|+
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~--~~--G~~ilRieDtD~----------------~r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EG--GKFILRIEDTDT----------------ERSSREYEQQILESLR 189 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--HT--CEEEECBCCCCS----------------SSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHh--cC--CcEEEEecCcCh----------------hhccHHHHHHHHHHHH
Confidence 455555999999999999999999999994 45 766666644441 1124567788999999
Q ss_pred hcCcccCCC---------CCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccccccccCCCchhhhhhhhc
Q psy4049 87 TYDIEYTHY---------VRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEH 157 (528)
Q Consensus 87 ~l~i~~d~~---------~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~ 157 (528)
+|||.+|.- ++.++ +.+..++++.+|.++|++|... |+..+ +... .. +.
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSe--r~~~y~~~~~~L~~~G~aY~c~-----ct~~e--l~~~---~~-~~--------- 247 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSE--RLEIYREYAEKLVEDKRAYYVV-----YDKED--PSKE---LF-TT--------- 247 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTT--CHHHHHHHHHHHHHTTTEEEEE-----EETTE--EEEE---CC-CC---------
T ss_pred HcCCCCCCCCCcCCCCCCeeeeC--CHHHHHHHHHHHHHcCCceEec-----CCHHH--HHhh---cC-CC---------
Confidence 999999962 23444 5688899999999999999642 33221 0000 00 00
Q ss_pred cCCCCCCCCCcccccCCCCCcEEeeeceeeeecc----ccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCcccccc
Q psy4049 158 QIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLS----NYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRP 233 (528)
Q Consensus 158 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR~ 233 (528)
.+ |. .. ....|.+..+|. +++ .|.+. + .+. .-.+. ....||.|-|.
T Consensus 248 ---Y~--~~-~~-~~~~g~~~~iR~------k~~~~~~~~~D~----v-~G~-~~~~~-----------~~~~D~Vl~R~ 297 (592)
T 3al0_C 248 ---YE--YP-HE-YKEKGHPVTIKF------KVLPGKTSFEDL----L-KGY-MEFDN-----------STLEDFIIMKS 297 (592)
T ss_dssp ---SS--CC-HH-HHHTTCCEEEEE------CCCSSCCEECCT----T-TCS-EECCS-----------SSSCCEEEECT
T ss_pred ---CC--cH-HH-HhhcCCCceEEE------ECCCCCceeeec----c-cce-eeecc-----------ccCCCeEEEcC
Confidence 00 00 00 001122222211 111 00000 0 000 00110 12678888775
Q ss_pred CCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-ee
Q psy4049 234 KARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-SH 312 (528)
Q Consensus 234 ~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g~ 312 (528)
. |.| +|+=+.+---... -.+-.+-|.||+. +.-.+..+..++|.++|. +.| .+
T Consensus 298 d-----g~p----------tY~~a~vvDD~~~--------githvirG~D~~~-~t~~q~~l~~alg~~~P~--~~hlpl 351 (592)
T 3al0_C 298 N-----GFP----------TYNFAVVVDDHLM--------RISHVFRGEDHLS-NTPKQLMIYEAFGWEAPV--FMHIPL 351 (592)
T ss_dssp T-----SCC----------CHHHHHHHHHHHT--------TCSBCCEEGGGGG-GHHHHHHHHTTTTCCCCB--CCEECC
T ss_pred C-----CCe----------ehhhHHHHHHHhc--------CCCeEEEchhhHh-CHHHHHHHHHHhCCCCCe--EEEeee
Confidence 2 211 1110000000000 1122345888864 445566667889987763 455 55
Q ss_pred e-eeCCCcccccCCCccCcchhhh-hcCchHHHHHHHhcC
Q psy4049 313 W-TVDGVKMSKSVGNVVDPMSKLS-DFTSCGLRYFLLREG 350 (528)
Q Consensus 313 ~-~~~g~KmSkS~gn~i~~~~~~~-~~~~d~lR~~~~~~~ 350 (528)
+ ..+|+|||||.|+ +++.++.+ +|.|+++|-|++..+
T Consensus 352 i~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 352 ILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp CBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred eeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 4 5689999999999 57888887 589999999998754
No 31
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.54 E-value=8.1e-15 Score=142.51 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=73.8
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||+|||||+|+++....++| ++.+.++.-++|.+.+ .-...+.+.|.++|+
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-------~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~ 65 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGSYLQAR-------ARQGRWLVRIEDIDPP-------------REVPGAAETILRQLE 65 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH-------HTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHH
T ss_pred eEEEECcCCCCCccHHHHHHHHHHHHHHH-------hcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHH
Confidence 57778899999999999999996666665 5555666666665543 112578889999999
Q ss_pred hcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeec
Q psy4049 87 TYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYP 122 (528)
Q Consensus 87 ~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~ 122 (528)
+|||.+|. .+..++ +.+..++++.+|.++|++|.
T Consensus 66 ~LGl~~D~~~~~qSe--r~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 66 HYGLHWDGDVLWQSQ--RHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp HTTCCCSSCCEEGGG--CHHHHHHHHHHHHHTTCEEE
T ss_pred HcCCCCCCCCeeeeC--CHHHHHHHHHHHHHcCCccc
Confidence 99999995 444455 77889999999999999995
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.53 E-value=6.1e-14 Score=145.04 Aligned_cols=244 Identities=17% Similarity=0.090 Sum_probs=143.0
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|+++....++| ... |.-++.+--+|.- .-...+.+.|.++|+
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~--G~filRieDtD~~----------------R~~~~~~~~I~~dL~ 85 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEG--GKFILRIEDTDTE----------------RSSREYEQQILESLR 85 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HHT--CEEEECBCCCCTT----------------TCCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH--HcC--CEEEEEEeeCCcc----------------cccHHHHHHHHHHHH
Confidence 56778899999999999999999999988 445 6655555555432 114567788999999
Q ss_pred hcCcccCCC---------CCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcccccccc-ccCCCchhhhhhhh
Q psy4049 87 TYDIEYTHY---------VRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQI-RPDEKNEEESFLLE 156 (528)
Q Consensus 87 ~l~i~~d~~---------~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~~~v-~~~~~~~~~~~~~~ 156 (528)
+|||.+|.- ++.|+ +.+..++++.+|.++|++|... |+..+ +..... ...
T Consensus 86 wlGl~wDe~~~~gG~~gp~~QSe--r~~~y~~~~~~L~~~G~aY~c~-----ct~ee--l~~~~~~~Y~----------- 145 (488)
T 3afh_A 86 WCGLDWDEGPDIGGDFGPYRQSE--RLEIYREYAEKLVEDKRAYYVV-----YDKED--PSKELFTTYE----------- 145 (488)
T ss_dssp HTTCCCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEEE-----ECSSS--TTSEEEEESS-----------
T ss_pred HcCCCCCcCCCCCCCCCCeeeeC--CHHHHHHHHHHHHHcCCeEecC-----CCHHH--HHhhcCCCCC-----------
Confidence 999999962 23343 6688899999999999999542 43321 100000 000
Q ss_pred ccCCCCCCCCCcccccCCCCCcEEeeeceeeeecc----ccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCCccccc
Q psy4049 157 HQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLS----NYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR 232 (528)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~dw~isR 232 (528)
|. .. ....|.+..+|. +++ .|.+. +. +. .-.+. ....||.|-|
T Consensus 146 --------~~-~~-~~~~G~~~~iR~------k~~~~~~~~~D~----v~-G~-~~~~~-----------~~~~D~Vl~R 192 (488)
T 3afh_A 146 --------YP-HE-YKEKGHPVTIKF------KVLPGKTSFEDL----LK-GY-MEFDN-----------STLEDFIIMK 192 (488)
T ss_dssp --------CC-HH-HHHTTCCEEEEE------CCCSSEEEEEET----TT-EE-EEEEG-----------GGSCCEEEEC
T ss_pred --------ch-hh-HHhcCCCceEEE------ECCCCceeEEec----cc-ee-EeecC-----------CCCCCeEEEe
Confidence 00 00 001122222211 111 00000 00 00 00111 1267888888
Q ss_pred cCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCCCCccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEe-e
Q psy4049 233 PKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVH-S 311 (528)
Q Consensus 233 ~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~h-g 311 (528)
.. |.| .|..+.-..+.. --.+-.+-|.||+. +.--+..+..++|.++|. +.| .
T Consensus 193 ~D-----G~P-----------------tY~lA~vVDD~~-mgIThViRG~D~l~-~tp~q~~l~~aLG~~~P~--f~H~p 246 (488)
T 3afh_A 193 SN-----GFP-----------------TYNFAVVVDDHL-MRISHVFRGEDHLS-NTPKQLMIYEAFGWEAPV--FMHIP 246 (488)
T ss_dssp TT-----SCB-----------------CHHHHHHHHHHH-TTCSEEEEEGGGGG-GHHHHHHHHHHHTCCCCE--EEEEC
T ss_pred cC-----CCe-----------------ehhhHHHHHHHh-cCCCEEEEchhhhh-CHHHHHHHHHHcCCCCCe--EEEEe
Confidence 62 221 111110000000 01223456888865 344555667789997763 556 5
Q ss_pred ee-eeCCCcccccCCCccCcchhhh-hcCchHHHHHHHhcC
Q psy4049 312 HW-TVDGVKMSKSVGNVVDPMSKLS-DFTSCGLRYFLLREG 350 (528)
Q Consensus 312 ~~-~~~g~KmSkS~gn~i~~~~~~~-~~~~d~lR~~~~~~~ 350 (528)
++ ..+|+|||||.|+ +++.++.+ .|.|++++-|++..+
T Consensus 247 li~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG 286 (488)
T 3afh_A 247 LILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 286 (488)
T ss_dssp CEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTT
T ss_pred eeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 55 5789999999999 57888887 589999999998765
No 33
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.47 E-value=1.6e-13 Score=141.38 Aligned_cols=263 Identities=17% Similarity=0.130 Sum_probs=148.2
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|+++....++| +.. |.-++.+--|| .. . -...+.+.|.++|+
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~--G~filRieDtD---~~---------R----~~~~~~~~I~~dl~ 61 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNG--GRFIVRIEDTD---RA---------R----YVPGAEERILAALK 61 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTT--CEEEECBCCCC---TT---------S----CCTTHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--HcC--CEEEEEeCcCC---Cc---------c----cChHHHHHHHHHHH
Confidence 35667899999999999999999999988 455 65555554444 21 1 13467788899999
Q ss_pred hcCcccCCC---------CCCCCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCccccc-c----ccccCCCchhhh
Q psy4049 87 TYDIEYTHY---------VRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLE-H----QIRPDEKNEEES 152 (528)
Q Consensus 87 ~l~i~~d~~---------~~t~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~l~~-~----~v~~~~~~~~~~ 152 (528)
+||+.+|.- ++.+ .+.+..++...+|.++|.+|... |...+ +.. + -..+.|......
T Consensus 62 wlGl~wd~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~~~G~aY~c~-----ct~~e--l~~~r~~~~~y~~~cr~l~~~ 132 (468)
T 1j09_A 62 WLGLSYDEGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYRAF-----ETPEE--LEQIRKEKGGYDGRARNIPPE 132 (468)
T ss_dssp HTTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEEEC-----CCHHH--HHHHHHHHSSCCCGGGGSCHH
T ss_pred HcCCCCCCCCCCCCCCCCeecc--CCHHHHHHHHHHHHHcCCeEEcC-----CCHHH--HHHHHHHcCCCCCcccCCCHH
Confidence 999999854 2333 37888899999999999999542 32211 000 0 001111100000
Q ss_pred hhhhccCCCCCCCCCcccccCCCCCcEEeeec----ee-eeeccccHHHHHHHHHhCCCcccchhhHHHHHHHHhccCCC
Q psy4049 153 FLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQ----NY-MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIEND 227 (528)
Q Consensus 153 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~----~~-~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~d 227 (528)
...+ ....|.+..+|... .. |-++ +. ++ .-.+. ..+.|
T Consensus 133 e~~~--------------~~~~g~~~~~R~k~~~~~~~~~~D~----------~~-G~-~~~~~-----------~~~~D 175 (468)
T 1j09_A 133 EAEE--------------RARRGEPHVIRLKVPRPGTTEVKDE----------LR-GV-VVYDN-----------QEIPD 175 (468)
T ss_dssp HHHH--------------HHHTTCCCEEEECCCSSCEEEEEET----------TT-EE-EEEEG-----------GGSCC
T ss_pred HHHH--------------HHhcCCCceEEEecCCCCceEEEec----------cc-ee-Eeecc-----------cCCCC
Confidence 0000 00112222222110 00 0000 00 00 00111 12678
Q ss_pred ccccccCCCcccccccCCCCCCeEEEeccchhhhhhhhcCCCCCC--CCccceEeeecccchhhhHHHHHHhhcCCCCCc
Q psy4049 228 ISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHT--WPPHIQILGKDILKFHGIYWPAFLIAAGLEPPK 305 (528)
Q Consensus 228 w~isR~~~~~~WG~~ip~~~~~~~~~wfds~~~~~~~~~~~~~~~--~~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~ 305 (528)
+.|-|.. |.| .|..+.-. .+ --.+-.+-|.||+. |...+..+..++|.++|.
T Consensus 176 ~Vl~R~d-----g~P-----------------tY~~a~vv---DD~~~githvirG~D~~~-~t~~q~~l~~alg~~~p~ 229 (468)
T 1j09_A 176 VVLLKSD-----GYP-----------------TYHLANVV---DDHLMGVTDVIRAEEWLV-STPIHVLLYRAFGWEAPR 229 (468)
T ss_dssp CEEECTT-----SCB-----------------CHHHHHHH---HHHHTTCCEEEEEGGGGG-GHHHHHHHHHHHTCCCCE
T ss_pred eEEEecC-----CCe-----------------eehhHHHH---HHHHCCCCeEEEChhhhh-hHHHHHHHHHHcCCCCCe
Confidence 8887752 221 11111000 00 01233456888864 455566677889987663
Q ss_pred EEEEe-eee-eeCCCcccccCCCccCcchhhh-hcCchHHHHHHHhcCCC--CCCCCcCHHHHH
Q psy4049 306 SFLVH-SHW-TVDGVKMSKSVGNVVDPMSKLS-DFTSCGLRYFLLREGTN--HSDSNYSETKAK 364 (528)
Q Consensus 306 ~~~~h-g~~-~~~g~KmSkS~gn~i~~~~~~~-~~~~d~lR~~~~~~~~~--~~~~~f~~~~~~ 364 (528)
+.| .++ ..+|+|||||.|+. ++.++.+ +|.|+++|-|++..+.. .....|+.+.+.
T Consensus 230 --~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~ 290 (468)
T 1j09_A 230 --FYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFI 290 (468)
T ss_dssp --EEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHH
T ss_pred --EEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHH
Confidence 456 554 57899999999998 7788876 48999999999876532 112457766554
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.45 E-value=9.8e-13 Score=135.21 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=74.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.+||||+|+++..+.++| ... |.-++.+..+|.. .-...+.+.|.++|+
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar--~~~--G~filRieDtD~~----------------R~~~~~~~~i~~dl~ 85 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFAR--KMK--GTFVLRIEDTDVE----------------RSSQEAVDAILEGMA 85 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHH--HTT--CEEEEEECCCCGG----------------GCCHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcC--CeEEEEeCCCCcc----------------cccHHHHHHHHHHHH
Confidence 56777899999999999999999999888 345 7666666655531 113578889999999
Q ss_pred hcCcccCC-CCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTH-YVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+|||.+|. .++.++ +.+..++++.+|.++|++|..
T Consensus 86 wlGl~~d~~~~~qS~--r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 86 WLGLDYDEGPYYQMQ--RMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HTTCCCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCCCCCCCccccc--CHHHHHHHHHHHHHCCCEEeC
Confidence 99999985 233344 788889999999999999943
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.43 E-value=5.2e-13 Score=138.09 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=75.1
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+++--+|.|||.|||||+|+++....++| +.. |.-++.+--||.- .-...+.+.|.++|+
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~g--G~fiLRieDtD~~----------------R~~~~~~~~I~~~L~ 66 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTG--GTFVFRIEDTDAQ----------------RDSEESYLALLDALR 66 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHT--CEEEECBCCCCTT----------------TCCHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcC--CEEEEEECcCCCc----------------ccChHHHHHHHHHHH
Confidence 56777899999999999999999999999 556 8666666655522 123467788899999
Q ss_pred hcCcccCC---------CCCCCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTH---------YVRTTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~---------~~~t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+||+++|. .+..++ +.+.-++...+|.++|.+|..
T Consensus 67 wlGl~wDegp~~gG~~~~~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 67 WLGLDWDEGPEVGGPYGPYRQSQ--RAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHTCCCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCCcCCCcCcCCCCCCeeeec--CHHHHHHHHHHHHHcCCeEEe
Confidence 99999986 333333 778889999999999999953
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.18 E-value=5.7e-11 Score=124.46 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=72.8
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+.|--+|.|||+|||||+|++++...+|| +.. |.-++.+--||-- .+ ...+.+.|.++|+
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~--G~fiLRieDtD~~------------R~----~~~~~~~I~~~L~ 84 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAK--SCG--GKFLLRIEDTDQS------------RY----SPEAENDLYSSLK 84 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTT--CEEEECBCCCCTT------------SC----CHHHHHHHHHHHH
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcC--CEEEEEeCcCCCC------------cC----CHHHHHHHHHHHH
Confidence 34667899999999999999999999998 566 8766666655522 11 2457778899999
Q ss_pred hcCcccCCCCC-------CCCHHHHHHHHHHHHHHhhCCCeecc
Q psy4049 87 TYDIEYTHYVR-------TTSEHHFRTVNTVWTKLKQRDSIYPN 123 (528)
Q Consensus 87 ~l~i~~d~~~~-------t~~~~~~~~~~~~~~~L~~~g~iy~~ 123 (528)
+|||.+|.-.. ...+.+.+.-++...+|.++|.+|..
T Consensus 85 wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 85 WLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 99999984211 12334667778899999999999943
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.60 E-value=5.9e-07 Score=88.69 Aligned_cols=69 Identities=22% Similarity=0.180 Sum_probs=50.0
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHhc
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLRE 349 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~~ 349 (528)
.+++.+.|.||.. |...-.-+...++.++|. ...+.++ .++|+|||||.||+|++.| .++++|..+.+.
T Consensus 170 ~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p~-~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQRK-IHMLARENLPRLGYSSPV-CLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCE-EEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhHH-HHHHHHHHHHhcCCCCce-EEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 5779999999975 333322333445655443 4445666 5889999999999999987 599999999863
No 38
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.6e-06 Score=85.07 Aligned_cols=68 Identities=21% Similarity=0.104 Sum_probs=37.4
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeC-CCcccccCCCc-cCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVD-GVKMSKSVGNV-VDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~-g~KmSkS~gn~-i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.+++.+.|.||.. |...-.-+...+|.++|.. +.+-++ .++ |+|||||.||. |++.| .++.++--+.+
T Consensus 182 ~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~~-l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~k 252 (394)
T 2dlc_X 182 DVDCQFGGVDQRK-IFVLAEENLPSLGYKKRAH-LMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKINS 252 (394)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCEE-EEECCCCCCC----------CCSCBTTC-----CHHHHHHHHHH
T ss_pred CCCEEecCccHHH-HHHHHHHHHHHcCCCCCEE-EecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHHH
Confidence 5678999999964 4444333445567655443 334555 578 99999999996 88876 56677776664
No 39
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=98.20 E-value=5e-06 Score=83.42 Aligned_cols=68 Identities=22% Similarity=0.179 Sum_probs=39.8
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCC-ccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGN-VVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn-~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
..++++.|.||.. |..+-.-+...+|..+|.. +.+.++ .++|+|||||.|| .|++.| .++.++-.+.+
T Consensus 178 ~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~~-l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~ 247 (372)
T 1n3l_A 178 KVDAQFGGIDQRK-IFTFAEKYLPALGYSKRVH-LMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 247 (372)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCEE-EEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCEEEcChhHHH-HHHHHHHHHHHcCCCCCEE-EecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHH
Confidence 4678999999974 3333333344566655443 334555 5789999999999 688876 47888877765
No 40
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.16 E-value=4.2e-06 Score=82.79 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=47.6
Q ss_pred CCccceEeeecccchhhhHHHHHHhh----cC--CCCCcEEEEe-eee-eeCCCcccccCCCccCcchhhhhcCchHHHH
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIA----AG--LEPPKSFLVH-SHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRY 344 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~----~~--~~~~~~~~~h-g~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~ 344 (528)
+..++.+.|.||.. |..+---+... .| .+.|..+..| -++ .++|+|||||.||.|++.| +|+.++-
T Consensus 152 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 35789999999975 33321111121 23 2345555554 444 5789999999999999987 8888888
Q ss_pred HHHhc
Q psy4049 345 FLLRE 349 (528)
Q Consensus 345 ~~~~~ 349 (528)
.+.+.
T Consensus 226 Ki~~a 230 (340)
T 2g36_A 226 TILRM 230 (340)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 88753
No 41
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=98.03 E-value=1e-05 Score=80.95 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=41.7
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-ee-CCC-cccccC-CCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TV-DGV-KMSKSV-GNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~-~g~-KmSkS~-gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.+|+.++|.||.. |..+---+...++...-..+..+.++ .+ +|. |||||. +|.|++.| +++.++==+.+
T Consensus 200 ~ad~vpgG~DQ~~-~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~KI~k 272 (373)
T 3vgj_A 200 NVDICQLGIDQRK-VNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRKIKK 272 (373)
T ss_dssp TCSEECCBGGGHH-HHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEcchhhHH-HHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHHHHh
Confidence 4678999999964 33332222333454322234445555 44 884 999999 57898865 55666655554
No 42
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.97 E-value=4e-05 Score=76.82 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=47.6
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
+++++|.++. -|||.+||||..+.+. ..+++... |++|.+..+ |.|..-. ..+.+++++ ..+.....
T Consensus 71 ~~p~~i~sG~-~PTG~lHLGh~v~~~~---~~~lQ~~~--g~~~~i~Ia-D~ha~~~-----~~~~~~e~i-~~~~~~~~ 137 (392)
T 3jxe_A 71 GRGFFLYTGR-GPSGPMHIGHIIPFFA---TKWLQEKF--GVNLYIQIT-DDEKFLF-----KENLTFDDT-KRWAYDNI 137 (392)
T ss_dssp TCCCEEEEEE-CCSSCCBHHHHHHHHH---HHHHHHHH--CCEEEEEEC-HHHHHHH-----CSSCCHHHH-HHHHHHHH
T ss_pred CCCeEEEecc-CCCCchhHHHHHHHHH---HHHHHHhc--CCceEEEec-chHHhhc-----CCCCCHHHH-HHHHHHHH
Confidence 4566665555 4568999999887642 22233437 998888766 4442210 113455544 44445666
Q ss_pred HHHhhcCcccC
Q psy4049 83 LMFKTYDIEYT 93 (528)
Q Consensus 83 ~~~~~l~i~~d 93 (528)
.++.++|++++
T Consensus 138 ~~~lA~GlDp~ 148 (392)
T 3jxe_A 138 LDIIAVGFDPD 148 (392)
T ss_dssp HHHHTTCCCTT
T ss_pred HHHHHhCcCcc
Confidence 67778899876
No 43
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=97.91 E-value=1.2e-05 Score=79.33 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=44.8
Q ss_pred CccceEeeecccchhhhHHHHHHh----hcC--CCCCcEEEE-e-eee-eeCC-CcccccCCCccCcchhhhhcCchHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLI----AAG--LEPPKSFLV-H-SHW-TVDG-VKMSKSVGNVVDPMSKLSDFTSCGLR 343 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~----~~~--~~~~~~~~~-h-g~~-~~~g-~KmSkS~gn~i~~~~~~~~~~~d~lR 343 (528)
..++++.|.||.. |...---+.. ..| .+.|..++. + -++ .++| +|||||.||.|++.| .|+.++
T Consensus 141 ~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~i~ 214 (337)
T 2el7_A 141 KADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEESIW 214 (337)
T ss_dssp TCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHHHH
T ss_pred CCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC-----CHHHHH
Confidence 5679999999975 3332111111 124 344443332 1 244 5789 999999999998876 488888
Q ss_pred HHHHhc
Q psy4049 344 YFLLRE 349 (528)
Q Consensus 344 ~~~~~~ 349 (528)
-.+.+.
T Consensus 215 ~Ki~~a 220 (337)
T 2el7_A 215 QKIQHL 220 (337)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 887753
No 44
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.77 E-value=0.00022 Score=71.36 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=47.4
Q ss_pred CCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++.|.++. -|+|+|||||+.+. ....++++.. |..+.++.+ |.+ +......+++++.+ +...+.
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~--g~~v~i~I~-D~~------a~~~r~~~~e~i~~-~~~~~~ 145 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAF--NIQVIIQIL-DDI------KVLNREATINEASK-MSNDLM 145 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHH--CCEEEEEEC-HHH------HHHTTSCCHHHHHH-HHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhc--CCeEEEEeC-chH------HhhcCCCCHHHHHH-HHHHHH
Confidence 4567776666 77889999997665 3344455656 888877732 211 11111256665443 444566
Q ss_pred HHHhhcCcccC
Q psy4049 83 LMFKTYDIEYT 93 (528)
Q Consensus 83 ~~~~~l~i~~d 93 (528)
.++-++|++++
T Consensus 146 ~~~lA~GlDp~ 156 (386)
T 3hzr_A 146 KYILAFGFNED 156 (386)
T ss_dssp HHHHHTCCCGG
T ss_pred HHHHHcCCCCc
Confidence 77788899876
No 45
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.77 E-value=7.8e-05 Score=74.41 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=43.7
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeC-----------------CCccccc-CCCccCcchhh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVD-----------------GVKMSKS-VGNVVDPMSKL 334 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~-----------------g~KmSkS-~gn~i~~~~~~ 334 (528)
.+++.+.|.||.. |..+---+...++.+.|. ...+.++ .++ |+||||| .+|.|++.|
T Consensus 177 ~~~~v~~G~DQ~~-~~~l~rdla~r~~~~~p~-~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d-- 252 (364)
T 2cya_A 177 DLDIALGGMDQRK-AHMLARDVAEKLGRKKPV-AIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD-- 252 (364)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHHTTTTCCCCE-EEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC--
T ss_pred CCCEEeccchHHH-HHHHHHHHHHHcCCCCce-eeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC--
Confidence 5679999999964 333322233345554433 3334455 456 7899999 788998876
Q ss_pred hhcCchHHHHHHHh
Q psy4049 335 SDFTSCGLRYFLLR 348 (528)
Q Consensus 335 ~~~~~d~lR~~~~~ 348 (528)
.++.++-.+.+
T Consensus 253 ---~p~~i~~Ki~~ 263 (364)
T 2cya_A 253 ---SDDDIRRKIRK 263 (364)
T ss_dssp ---CHHHHHHHHHT
T ss_pred ---CHHHHHHHHHh
Confidence 47788877764
No 46
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.71 E-value=0.00022 Score=76.80 Aligned_cols=78 Identities=10% Similarity=-0.031 Sum_probs=44.9
Q ss_pred CcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKL 83 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 83 (528)
++..|.++. -|||.||||| +.+..-.+.++ ... |++|.+..| |-|+.-. .+.|.++++ +..+...+.+
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~--~v~~~~~~~~l-Q~~--G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~ 106 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ--GIFKAVNVNKC-TAA--GCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIE 106 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH--HHHHHHHHHHH-HHT--TEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHH
T ss_pred CCceEEeee-cCCCcchhHh--hHHHHHHHHHH-HHC--CCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHH
Confidence 455555555 6778999999 22222123444 456 899877766 5453310 112333443 3344456677
Q ss_pred HHhhcCcccC
Q psy4049 84 MFKTYDIEYT 93 (528)
Q Consensus 84 ~~~~l~i~~d 93 (528)
++..+|++++
T Consensus 107 ~~lA~GlDp~ 116 (690)
T 3p0j_A 107 VWKAAGMDMD 116 (690)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCCChH
Confidence 8889999876
No 47
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.68 E-value=6.4e-05 Score=73.58 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=39.6
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCC-CcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDG-VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g-~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.+++++.|.||.. |..+ + .-...++ ..+..+-++ .++| +|||||.||.|++.| .++.+|==+.+
T Consensus 163 ~~~~v~~G~DQ~~-~~~l--~--R~i~~~~-~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~i~~KI~~ 228 (314)
T 2zp1_A 163 GVDVAVGGMEQRK-IHML--A--RELLPKK-VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEEIRAKIKK 228 (314)
T ss_dssp TCSEEEEEGGGHH-HHHH--H--HHHSSSC-CEEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHHHHHHHHH
T ss_pred CCCEEEcChhHHH-HHHH--H--HHhcCCC-cEEeeccccccCCcccccCCCCcceecCCC-----CHHHHHHHHHh
Confidence 3568999999975 2211 2 1122222 223333455 4789 799999999999876 55666655554
No 48
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.56 E-value=0.00054 Score=69.61 Aligned_cols=66 Identities=17% Similarity=0.024 Sum_probs=40.3
Q ss_pred ccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCC--CcccccCCC-ccCcchhhhhcCchHHHHHHH
Q psy4049 275 PHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDG--VKMSKSVGN-VVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 275 ~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g--~KmSkS~gn-~i~~~~~~~~~~~d~lR~~~~ 347 (528)
..+..+|.||.. |..+---+...++.+.|.. +.+-++ .++| +|||||.+| .|++.| .++.++==+.
T Consensus 257 ~~lVpvG~DQ~~-~i~l~Rdla~r~~~~~P~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D-----~p~~I~kKI~ 326 (437)
T 1r6u_A 257 QCLIPCAIDQDP-YFRMTRDVAPRIGYPKPAL-LHSTFFPALQGAQTKMSASDPNSSIFLTD-----TAKQIKTKVN 326 (437)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHGGGGTCCCCEE-EEECCCEETTEEEEECCTTSSSSCCBTTC-----CHHHHHHHHH
T ss_pred ceEEEeehhhHH-HHHHHHHHHHHhCCCCceE-eecccccCCCCCccccCCCCCCCeeeccC-----CHHHHHHHhh
Confidence 345668999964 3322222233456544443 444555 5888 899999999 898866 4555554444
No 49
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.44 E-value=0.00095 Score=68.76 Aligned_cols=66 Identities=17% Similarity=0.045 Sum_probs=40.1
Q ss_pred ccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCC--CcccccCCC-ccCcchhhhhcCchHHHHHHH
Q psy4049 275 PHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDG--VKMSKSVGN-VVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 275 ~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g--~KmSkS~gn-~i~~~~~~~~~~~d~lR~~~~ 347 (528)
..+..+|.||.. |..+---+...++.+.|. .+.+-++ .++| +|||||.|| .|++.| .++.++==+.
T Consensus 304 ~~~VpvG~DQ~~-~i~l~Rdla~r~~~~~p~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~d-----~p~~i~kKi~ 373 (477)
T 1r6t_A 304 QCLIPCAIDQDP-YFRMTRDVAPRIGYPKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD-----TAKQIKTKVN 373 (477)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHGGGGTCCCCE-EEEECCCEETTEEEEECCTTSTTCCCBTTC-----CHHHHHHHHH
T ss_pred ceeEeccccHHH-HHHHHHHHHHHhCCCCce-eeecccccCCCCCccccCCCCCCCceeecC-----CHHHHHHHhc
Confidence 345668999965 333322223445654444 3444555 5888 799999999 898876 4445544443
No 50
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.38 E-value=0.00078 Score=67.58 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=45.5
Q ss_pred CCcEEEECCCCCCC-CCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVN-ASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~n-G~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++++|.++. -|| |.|||||+-+.+ .++++++.. |..|.+.. |++- ........+++++ .++...+
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~--~~~v~i~I-----~D~~-~~~~r~~~~~e~i-~~~~~~~ 138 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTF--KVPLVIQL-----TDDE-KFIFKSNLTLEET-HNYAYEN 138 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHH--CCCEEEEE-----CHHH-HHHHCTTCCHHHH-HHHHHHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhc--CCCeEeec-----cChH-HHhhccCCCHHHH-HHHHHHH
Confidence 3456665554 556 689999965554 455566666 77766632 2221 1112224565544 4445566
Q ss_pred HHHHhhcCcccC
Q psy4049 82 KLMFKTYDIEYT 93 (528)
Q Consensus 82 ~~~~~~l~i~~d 93 (528)
.+++.++|++++
T Consensus 139 ~~~~lA~GlDp~ 150 (393)
T 3hv0_A 139 MKDIIACGFDPE 150 (393)
T ss_dssp HHHHHTTCCCTT
T ss_pred HHHHHHcCCCCc
Confidence 677778898876
No 51
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.00051 Score=68.78 Aligned_cols=69 Identities=19% Similarity=0.026 Sum_probs=42.9
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCC--------CCCcEEEEeeee-eeCC------------------CcccccC-C
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGL--------EPPKSFLVHSHW-TVDG------------------VKMSKSV-G 325 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~--------~~~~~~~~hg~~-~~~g------------------~KmSkS~-g 325 (528)
.+++.++|.||.. |..+---+...++. .....+..+.++ .++| +|||||. +
T Consensus 180 ~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~ 258 (375)
T 2cyc_A 180 GVTIAHAGMDQRK-AHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY 258 (375)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGG
T ss_pred CCCeecccchHHH-HHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCC
Confidence 4679999999964 33332222233443 101123334455 4677 7999998 7
Q ss_pred CccCcchhhhhcCchHHHHHHHh
Q psy4049 326 NVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 326 n~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
|.|++.| .++.++-.+.+
T Consensus 259 ~~I~L~d-----~p~~i~~KI~~ 276 (375)
T 2cyc_A 259 SAVFIHD-----SPEEIRQKLRK 276 (375)
T ss_dssp GSCBTTC-----CHHHHHHHHHH
T ss_pred CeeccCC-----CHHHHHHHHHH
Confidence 8898876 47888877765
No 52
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.28 E-value=0.00028 Score=69.97 Aligned_cols=68 Identities=25% Similarity=0.140 Sum_probs=41.0
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-ee-CC-CcccccC-CCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TV-DG-VKMSKSV-GNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~-~g-~KmSkS~-gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.++++++|.||.. |..+---+...++...| .+..+.++ .+ +| +|||||. ||.|++.| .++.++==+.+
T Consensus 186 ~~~~~~~G~DQ~~-~i~l~Rdia~r~~~~~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d-----~p~~i~kKI~k 257 (348)
T 2j5b_A 186 GIDICQLGIDQRK-VNMLAIEYANDRGLKIP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD-----TEQEVSEKISR 257 (348)
T ss_dssp CCSEECCBGGGHH-HHHHHHHHHHHTTCCCC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEeccChHH-HHHHHHHHHHHhCCCCc-eeecCccccCCCCcccccccCCCCCeEeecC-----CHHHHHHHHhc
Confidence 4578889999974 33322222334555443 23334455 45 67 6999999 68898876 55556555554
No 53
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.56 E-value=0.0012 Score=64.73 Aligned_cols=71 Identities=15% Similarity=-0.001 Sum_probs=47.2
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.+++.++|.||.. |...---+...++..++ ..+.+-++ .++|+|||||.||.|++.| ++.+|+.++-.+.+
T Consensus 191 ~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~-~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 191 GVVLCIGGSDQWG-NITSGIDLTRRLHQNQV-FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp CEEEEEECTTCHH-HHHHHHHHHHHHHCCCC-EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CceEEecCchhHH-HHHHHHHHHHHhCCCCc-eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 5789999999964 33321112223333332 23344444 4689999999999999988 66788888877764
No 54
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.41 E-value=0.0028 Score=62.88 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=35.5
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.++++++|.||.. |...---+...++..++ ..+.+-++ .++|+|||||.||.|++.| +.-+|+.++-.+.+
T Consensus 210 ~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~-~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 210 GCRVQLGGSDQLG-NIMSGYEFINKLTGEDV-FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp CCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC-EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCc-cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 6789999999964 33321122233454333 23334555 5799999999999999987 34578888888774
No 55
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.30 E-value=0.0045 Score=62.94 Aligned_cols=68 Identities=22% Similarity=0.206 Sum_probs=47.1
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCC-cccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGV-KMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~-KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.++++++|.||.. |...-.-+...++..++ ..+.+-++ .++|. |||||.||.|++.| +|+.++-.+.+
T Consensus 187 ~~~l~~gG~DQ~~-ni~l~rdlarr~~~~~~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~ 256 (432)
T 1h3f_A 187 RADVEMGGTDQRF-NLLVGREVQRAYGQSPQ-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMR 256 (432)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHHHHTTCCCC-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred CccEEEechHHHH-HHHHHHHHHHHhCCCCc-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhC
Confidence 4679999999964 44332223344555443 34445555 57896 99999999999987 78888877774
No 56
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.07 E-value=0.0035 Score=63.52 Aligned_cols=71 Identities=17% Similarity=0.037 Sum_probs=44.8
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCCcccccCCC-ccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGN-VVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~KmSkS~gn-~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.++++++|.||.. |...-.-+...++..++ ..+.+-++ ..+|+|||||.|| .|++.| +.-+|+.++=++.+
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~-~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLGATV-HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHCCCC-EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCc-cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 6789999999965 32221112223343332 23334444 5799999999999 898876 23467777766664
No 57
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.99 E-value=0.0049 Score=62.51 Aligned_cols=70 Identities=19% Similarity=0.067 Sum_probs=44.2
Q ss_pred CccceEeeecccchhhhHHHHHHhhc-CCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~ 347 (528)
.++++++|.||.. |...-.-+...+ +..++ ..+.+-++ ..+|+|||||.||.|++.|= .-+|+.++=++.
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~-~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~ 257 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQTDA-YGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWI 257 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCCCC-EEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHH
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe-eEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 6789999999964 333222222334 44332 33444555 57999999999999998762 235666665555
No 58
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.98 E-value=0.0022 Score=62.78 Aligned_cols=69 Identities=26% Similarity=0.287 Sum_probs=44.0
Q ss_pred CccceEeeecccchhhhHHHHHHhhc----C--CCCCcEEE--Eeeee-eeCCCcccccCCCccCcchhhhhcCchHHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAA----G--LEPPKSFL--VHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRY 344 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~----~--~~~~~~~~--~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~ 344 (528)
..++.++|.||.. |..+---+..-+ | .+.|..++ .+.++ .++|+|||||.+|.|++.| +++.++-
T Consensus 139 ~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~~ 212 (322)
T 3tzl_A 139 DTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLKK 212 (322)
T ss_dssp TCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHHH
T ss_pred CCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHHH
Confidence 5789999999974 332211111111 2 23444444 23344 4789999999999998876 6777877
Q ss_pred HHHh
Q psy4049 345 FLLR 348 (528)
Q Consensus 345 ~~~~ 348 (528)
.+.+
T Consensus 213 KI~~ 216 (322)
T 3tzl_A 213 QISS 216 (322)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7764
No 59
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.96 E-value=0.0045 Score=62.58 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=43.7
Q ss_pred CccceEeeecccchhhhHHHHHHhhc-CCCCCcEEEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~-~~~~~~~~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.++++++|.||.. |...-.-+...+ +..+ ...+.+-++ ..+|+|||||.||.|++.|= .-+|+.++=++.+
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~-~~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 257 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEAR-AFGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWIN 257 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC--C-CEEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCC-eeecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 6789999999964 333212222334 4433 233444555 57999999999999998762 2356666655553
No 60
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.10 E-value=0.011 Score=59.38 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=29.5
Q ss_pred EEEeeee-eeCCCcccccCCCccCcchhhhhcCchHHHHHHHh
Q psy4049 307 FLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 307 ~~~hg~~-~~~g~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
.+.+-++ .++|+|||||.||.|++.|=. -+|+.++=++.+
T Consensus 280 ~l~~pll~~ldG~KMSKS~~naI~L~d~~--tsp~~i~qki~~ 320 (392)
T 1y42_X 280 GFTVPLLTDSSGAKFGKSAGNAIWLDPYQ--TSVFDFYGYFVR 320 (392)
T ss_dssp EEECCCCBCTTCCBTTBCSSSBCBSSTTT--SCHHHHHHHHHT
T ss_pred ccccccCcCCchhhccCCCCCeeeccCCC--CCHHHHHHHHHc
Confidence 3444555 579999999999999987632 477777777764
No 61
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=94.94 E-value=0.012 Score=58.13 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=44.2
Q ss_pred CccceEeeecccchhhhHHHHHHh----hcC--CCCCcEEEEe-eee-eeCCC-cccccCCCccCcchhhhhcCchHHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLI----AAG--LEPPKSFLVH-SHW-TVDGV-KMSKSVGNVVDPMSKLSDFTSCGLRY 344 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~----~~~--~~~~~~~~~h-g~~-~~~g~-KmSkS~gn~i~~~~~~~~~~~d~lR~ 344 (528)
..++++.|.||.. |...---+.. ..| .+.|..++.| .++ .++|+ |||||.||.|++.| .++.++-
T Consensus 162 ~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~~ 235 (351)
T 1yi8_B 162 GATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVAR 235 (351)
T ss_dssp TCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHHH
T ss_pred CCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHHH
Confidence 5679999999975 3332111111 124 3445555544 344 47897 99999999988866 4777777
Q ss_pred HHHh
Q psy4049 345 FLLR 348 (528)
Q Consensus 345 ~~~~ 348 (528)
.+.+
T Consensus 236 Ki~~ 239 (351)
T 1yi8_B 236 KVMG 239 (351)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7764
No 62
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=94.82 E-value=0.015 Score=59.04 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=31.6
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCC--CcccccCCC-ccCcch
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDG--VKMSKSVGN-VVDPMS 332 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g--~KmSkS~gn-~i~~~~ 332 (528)
..+++++|.||.. |..+---+...++.+.|. ...+-++ .++| +|||||.+| .|++.|
T Consensus 249 ~~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p~-~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 249 TPCLIPCAIDQDP-YFRVCRDVADKLKYSKPA-LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp CCEEEEEEGGGHH-HHHHHHHHHHHHTSCCCE-EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CceEEEeccCcHH-HHHHHHHHHHHhCCCCce-eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 4668889999965 333222223345655454 3444555 5788 899999999 898876
No 63
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=94.79 E-value=0.018 Score=57.93 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCcEEEECCCCCCCC-CChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNA-SPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG-~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++++|.++. -||| .|||||+-+. ....++++.. |..+.+..+ |.|. ... ...+++++ .++...+
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~--g~~~~i~Ia-D~~a--~l~----~~~~~e~i-~~~~~~~ 164 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAF--KIRLVIQIT-DDEK--FLW----KSMRLEDA-MAYGREN 164 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHH--TCCEEEEEC-HHHH--HHH----SSCCHHHH-HHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhc--CCcEEEEee-ChHH--HcC----CCCCHHHH-HHHHHHH
Confidence 4677776666 7787 7999997654 3444466666 777766432 3331 111 12466554 4444566
Q ss_pred HHHHhhcCcccC
Q psy4049 82 KLMFKTYDIEYT 93 (528)
Q Consensus 82 ~~~~~~l~i~~d 93 (528)
..++-++|++++
T Consensus 165 ~~~~lA~GlDp~ 176 (406)
T 3tze_A 165 IKDIVTLGFDPK 176 (406)
T ss_dssp HHHHHTTTCCGG
T ss_pred HHHHHHcCCCcc
Confidence 667778888876
No 64
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=94.77 E-value=0.013 Score=58.79 Aligned_cols=77 Identities=10% Similarity=0.040 Sum_probs=47.6
Q ss_pred CCcEEEECCCCCCCC-CChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVNA-SPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~nG-~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++++|.++. -||| .|||||+-+. ..++++++.. |..|..+.| ++. ++.....+++++. .+...+
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~--~~~v~i~I~-----D~~--~~l~~~~~~e~i~-~~~~~~ 141 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSF--RVPLVIQMT-----DDE--KFYFRNIPMEQVE-AMTTEN 141 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHH--TCCEEEEEC-----HHH--HHHHSCCCHHHHH-HHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhc--CCcEEEEEc-----chH--HHhcCCCCHHHHH-HHHHHH
Confidence 4567776666 7788 7999997554 4455566666 777777633 221 1222235665544 445566
Q ss_pred HHHHhhcCcccC
Q psy4049 82 KLMFKTYDIEYT 93 (528)
Q Consensus 82 ~~~~~~l~i~~d 93 (528)
.+++-++|++++
T Consensus 142 ~~~~lA~GlDp~ 153 (395)
T 3i05_A 142 IKDIIAMGFDPE 153 (395)
T ss_dssp HHHHHTTTCCTT
T ss_pred HHHHHHcCCCCC
Confidence 677777888765
No 65
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=94.68 E-value=0.013 Score=58.00 Aligned_cols=70 Identities=20% Similarity=0.096 Sum_probs=42.5
Q ss_pred CCccceEeeecccchhhhHHHHHHhhc----C--CCCCcEEEE--eeee-eeCC--CcccccCCC---ccCcchhhhhcC
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAA----G--LEPPKSFLV--HSHW-TVDG--VKMSKSVGN---VVDPMSKLSDFT 338 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~----~--~~~~~~~~~--hg~~-~~~g--~KmSkS~gn---~i~~~~~~~~~~ 338 (528)
+..++.+.|.||.. |..+---+...+ | .+.|..++. +.++ .++| +|||||.+| .|.+.| +
T Consensus 146 ~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D-----~ 219 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD-----P 219 (348)
T ss_dssp TCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC-----C
T ss_pred hCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC-----C
Confidence 35789999999975 333321122222 3 334444443 2334 4677 899999999 898876 5
Q ss_pred chHHHHHHHh
Q psy4049 339 SCGLRYFLLR 348 (528)
Q Consensus 339 ~d~lR~~~~~ 348 (528)
++.++==+.+
T Consensus 220 ~~~i~~KI~~ 229 (348)
T 2yy5_A 220 KEVVVKKIRQ 229 (348)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5556555553
No 66
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=94.57 E-value=0.016 Score=56.87 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=41.5
Q ss_pred EEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy4049 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFK 86 (528)
Q Consensus 7 ~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 86 (528)
+.++-- |||.|||||+.+.+.. +.+ -.. |+++.+..+ |.|+.-. ..++++ ...+...+..++-
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~--~~~--lQ~--g~~~~~~Ia-D~ha~~~-------~~~~e~-i~~~~~~~~~~~l 66 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQ--FVE--LQH--EYNCYFCIV-DQHAITV-------WQDPHE-LRQNIRRLAALYL 66 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHH--HHH--HTT--TSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHH
T ss_pred EEEeeC--CCCcccHHHHHHHHHH--HHH--HHc--CCcEEEEEe-CceeecC-------CCCHHH-HHHHHHHHHHHHH
Confidence 334444 4589999999987621 112 244 888866554 3232211 035543 4445567778888
Q ss_pred hcCcccC
Q psy4049 87 TYDIEYT 93 (528)
Q Consensus 87 ~l~i~~d 93 (528)
.+|++++
T Consensus 67 a~Gldp~ 73 (328)
T 1i6k_A 67 AVGIDPT 73 (328)
T ss_dssp HTTCCTT
T ss_pred HhCCChh
Confidence 9999887
No 67
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=94.49 E-value=0.061 Score=53.56 Aligned_cols=78 Identities=9% Similarity=0.110 Sum_probs=50.3
Q ss_pred CCCcEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 2 FKSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 2 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.+++++|.++. -|||.|||||..+.. -.+++... |++|.+.. .|.|-.- -......+....+....
T Consensus 67 ~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~--~~~~~~~I-aD~ha~t------~~~~~~~e~~r~~~~~~ 132 (372)
T 3a04_A 67 RGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKN--GFKVFVAI-ADAEAFA------VRRIGREEAVRIAVEEY 132 (372)
T ss_dssp TTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHT--TCEEEEEE-CHHHHHH------TTCCCHHHHHHHHHHTT
T ss_pred cCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhC--CCeEEEEE-ecchhhc------cCCCCCHHHHHHHHHHH
Confidence 46788887776 778999999987542 24455556 99986544 4544211 11223344455566666
Q ss_pred HHHHhhcCcccC
Q psy4049 82 KLMFKTYDIEYT 93 (528)
Q Consensus 82 ~~~~~~l~i~~d 93 (528)
..++-++|++++
T Consensus 133 ~~~~lA~GlDP~ 144 (372)
T 3a04_A 133 IANMIALGLDPK 144 (372)
T ss_dssp HHHHHHHTCCTT
T ss_pred HHHHHHcCCChH
Confidence 677788999887
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=91.23 E-value=0.69 Score=46.90 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCcEEEECCCCCCC-CCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 3 KSTCFITTPIFYVN-ASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 3 ~~~~~v~~~~P~~n-G~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
+++++|.++. -|| |.|||||+-+. -.+.++++.. |..+.+.. |++ .....+...+++++ ..+...+
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~~---~~l~~lQ~~~--g~~v~I~I-----gD~-~a~~~r~~lt~E~I-~~n~~~~ 155 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLPF---IFTKYLQDAF--KCYVVIQI-----TDD-EKFLRNRSLSYAEV-DSYTREN 155 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHH---HHHHHHHHHH--TCEEEEEE-----CHH-HHHHHCTTCCHHHH-HHHHHHH
T ss_pred CCCeEEEecC-CCCCCCccHHHHHHH---HHHHHHHHcc--CceEEEEe-----eCc-HHhhcccCCCHHHH-HHHHHHH
Confidence 3567776555 566 79999996654 3445566666 77777743 333 11112224566544 4445566
Q ss_pred HHHHhhcCcccC
Q psy4049 82 KLMFKTYDIEYT 93 (528)
Q Consensus 82 ~~~~~~l~i~~d 93 (528)
.+++-++|++++
T Consensus 156 ~~~~lA~GlDpe 167 (451)
T 3foc_A 156 IKDIIACGFDPD 167 (451)
T ss_dssp HHHHHTTTCCGG
T ss_pred HHHHHHcCCCCC
Confidence 677778888765
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=91.12 E-value=0.11 Score=52.77 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=38.3
Q ss_pred ceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCCC--cccccCCC-ccCcchhhhhcCchHHHHHHHh
Q psy4049 277 IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGV--KMSKSVGN-VVDPMSKLSDFTSCGLRYFLLR 348 (528)
Q Consensus 277 i~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g~--KmSkS~gn-~i~~~~~~~~~~~d~lR~~~~~ 348 (528)
+.+.|.||.. |..+---+...++.+.|. +..+.++ .++|. |||||.+| .|.+.| +++.++==+.+
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rfn~~~p~-~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D-----~p~~I~kKI~k 358 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRMGHPKNA-YLLGKFLPGLQGSGTKMSASDPNSAIYLTD-----TPAQIKNKINR 358 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTTTSCCCE-EEEECCCCBTTBTTCCCCTTCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred eeeeecchHH-HHHHHHHHHHHhCCCCCe-eecCCcccCCCCCCCccCCCCCCCeeeecC-----CHHHHHHHHhh
Confidence 6788999975 333311222335554444 3344455 57775 99999987 676644 45555554444
No 70
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=90.69 E-value=0.29 Score=48.70 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=44.2
Q ss_pred CcEE----EECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHH
Q psy4049 4 STCF----ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISD 79 (528)
Q Consensus 4 ~~~~----v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~ 79 (528)
+++| |.++. -|||.+||||..+.+. .+.++.. |++|.+.. .|.|..- ...+++++ ..+..
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvGal~-----~~~~LQ~-~~~~~~~I-aD~hAlt-------~~~~~~~l-r~~~~ 93 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIGAMK-----QFVELQH-DYNSYFCI-VDQHAIT-------VPQDRLEL-RKNIR 93 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHHTHH-----HHHHTTT-TSEEEEEE-CHHHHTT-------SCCCHHHH-HHHHH
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHHHHH-----HHHHHHc-cCcEEEEE-ecceeee-------cCCCHHHH-HHHHH
Confidence 5666 65555 6789999999988753 2223332 89987655 3544321 12455544 44445
Q ss_pred HHHHHHhhcCcccC
Q psy4049 80 QYKLMFKTYDIEYT 93 (528)
Q Consensus 80 ~~~~~~~~l~i~~d 93 (528)
+...++...|++++
T Consensus 94 ~~aa~~lA~GlDp~ 107 (388)
T 3prh_A 94 NLAALYLAVGLDPE 107 (388)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHhCCChh
Confidence 66778888999987
No 71
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=90.67 E-value=0.25 Score=48.05 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.|||||+.+.+.. +.++ .. |+++.+..+ |.|+.-. ..++++ ...+......++..+|++++
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~l--Q~--g~~~~~~ia-D~ha~~~-------~~~~~~-l~~~~~~~~~~~lA~Gldp~ 75 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDA--QE--KSQMFMFIA-NYHAMTS-------SQDGEK-LKQNSLKAAAAFLSLGIDPQ 75 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHT--TT--TSCCEEEEC-HHHHTTT-------CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCccccHHHHHHHHHH--HHHH--hc--CCCEEEEEe-cCeeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCcc
Confidence 46689999999886543 2332 34 888876654 4442210 124444 34445566677778899886
No 72
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=90.62 E-value=0.67 Score=46.29 Aligned_cols=66 Identities=17% Similarity=-0.007 Sum_probs=31.7
Q ss_pred ccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCC--CcccccCCCccCcchhhhhcCchHHHHHHH
Q psy4049 275 PHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDG--VKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 275 ~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g--~KmSkS~gn~i~~~~~~~~~~~d~lR~~~~ 347 (528)
.+++++|.||.. |..+---+...++.+++. +..+-++ .++| +|||||.||.|++.| .++.++==+.
T Consensus 225 ~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p~-~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI~ 293 (395)
T 3i05_A 225 FCLIPQAIDQDP-YFRLTRDIAPRLGYLKPA-VIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKIN 293 (395)
T ss_dssp EEEEEEEGGGHH-HHHHHHHTHHHHTCCCCE-EEEECCCCCC-------------CCBTTC-----CHHHHHHHHC
T ss_pred ceEEEeccchHH-HHHHHHHHHHHcCCCCce-eeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHHH
Confidence 678999999964 222211122335655444 3334555 5788 799999999998876 5666664443
No 73
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=87.32 E-value=0.21 Score=48.96 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.+||||..+.+ .++.++.. ++++.+..+ |.|..- ...+|++ ..++......++...|++++
T Consensus 23 ~PTG~lHLGh~vg~l-----~~~~~lQ~-~~~~~~~ia-D~hA~t-------~~~~~~~-~~~~~~~~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 23 QPSGELTIGNYMGAL-----RQWVQMQD-DYDCIYCIV-DLHAIT-------ARQDPAL-LRKRTLDTLALYLACGIDPK 87 (346)
T ss_dssp CSCSCCBHHHHHHTH-----HHHHTTTT-TSEEEEEEC-HHHHTT-------SCCCHHH-HHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHHH-----HHHHHHHh-hCcEEEEEe-cceeec-------CCCCHHH-HHHHHHHHHHHHHHcCCCcc
Confidence 567899999988774 33333332 788765543 544321 1235543 44455566777888999887
No 74
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=87.19 E-value=1.2 Score=43.44 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCccceEeeecccchhhhHHHHHHhhc----C--CCCCcEEEE--eeee-eeCC--CcccccCCC-c--cCcchhhhhcC
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAA----G--LEPPKSFLV--HSHW-TVDG--VKMSKSVGN-V--VDPMSKLSDFT 338 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~----~--~~~~~~~~~--hg~~-~~~g--~KmSkS~gn-~--i~~~~~~~~~~ 338 (528)
+..++.+.|.||.. |...---+...+ | ...|..++. +.++ .++| +|||||.|| . |++.| .
T Consensus 136 ~~~~~vpvG~DQ~~-~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d-----~ 209 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD-----D 209 (328)
T ss_dssp TTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC-----C
T ss_pred hCCCEEecccchHH-HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC-----C
Confidence 35789999999975 333211112222 2 234444443 2344 5778 899999999 6 88766 4
Q ss_pred chHHHHHHHh
Q psy4049 339 SCGLRYFLLR 348 (528)
Q Consensus 339 ~d~lR~~~~~ 348 (528)
++.++==+.+
T Consensus 210 ~~~i~~KI~~ 219 (328)
T 1i6k_A 210 AKTIEKKIKS 219 (328)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 75
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=87.09 E-value=1.6 Score=44.12 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=45.1
Q ss_pred CcEEEECCCCCCC-CCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 4 STCFITTPIFYVN-ASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 4 ~~~~v~~~~P~~n-G~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++++|.++. -|| |.|||||+.+.+. +.++++.. |+++.+..| |.++.. . ....+++. +.++...+.
T Consensus 101 ~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~--g~~~i~lI~-D~ta~l-~----~~~~t~e~-i~~~~~~~~ 167 (432)
T 2ip1_A 101 KPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVF--DVPLVIELT-DDEKFL-F----KHKLTIND-VKNFARENA 167 (432)
T ss_dssp CCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHH--TCCEEEEEC-HHHHHH-H----CTTCCHHH-HHHHHHHHH
T ss_pred CCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHc--CCeEEEEEe-ccccee-C----CCCCCHHH-HHHHHHHHH
Confidence 455554444 455 7999999886542 33455447 998877776 322211 0 01245544 445555556
Q ss_pred HHHhhcCcccC
Q psy4049 83 LMFKTYDIEYT 93 (528)
Q Consensus 83 ~~~~~l~i~~d 93 (528)
.++-.+|++++
T Consensus 168 ~~~lA~GlDp~ 178 (432)
T 2ip1_A 168 KDIIAVGFDPK 178 (432)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHhCCCCC
Confidence 66777888776
No 76
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=87.05 E-value=1 Score=44.31 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=38.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.|||||+.+.+ .++.++.. .+++.+.. .|.|+.-.. ..+++++ ..+...+..++.++|++++
T Consensus 30 ~PTG~lHLGn~~g~l-----~~~~~lQ~-~~~~~~~I-aD~ha~~~~------~~~~e~i-~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 30 RPTGALHLGHLAGSL-----QNRVRLQD-EAELFVLL-ADVQALTDH------FDRPEQV-RENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp CCSSCCBHHHHHHTH-----HHHHHHTS-SSEEEEEE-CHHHHHHHH------TTCHHHH-HHHHHHHHHHHHHHTCCTT
T ss_pred CCCCCccHHHHHHHH-----HHHHHHHH-hCCeEEEE-ecchhhcCC------CCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence 346899999998864 23323221 46665444 344433211 3455544 4444566778888999887
No 77
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=86.89 E-value=0.13 Score=50.45 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=39.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.+||||..+.+.. +.+++ . |+++.+..+ |.|..-. ..++++ ..++......++...|++++
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ--~--~~~~~~~ia-D~ha~~~-------~~~~~~-~~~~~~~~~~~~lA~GlDp~ 78 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQ--D--DYDCQYCVV-DLHAITV-------RQDPQA-LHEATLDALAICLAVGVDPK 78 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHH--H--HSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--h--cCeEEEEEe-cceeEcC-------CCCHHH-HHHHHHHHHHHHHHcCCChh
Confidence 46689999999886521 22222 3 577765543 4443211 245543 44555567778888999987
No 78
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=86.55 E-value=0.19 Score=50.14 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=38.0
Q ss_pred CCccceEeeecccchhhhHHHHHHhhc----C--CCCCcEEEE--eeee-ee-CC-CcccccC---CCccCcchhhhhcC
Q psy4049 273 WPPHIQILGKDILKFHGIYWPAFLIAA----G--LEPPKSFLV--HSHW-TV-DG-VKMSKSV---GNVVDPMSKLSDFT 338 (528)
Q Consensus 273 ~~~di~~~G~D~~~~h~~~~~a~~~~~----~--~~~~~~~~~--hg~~-~~-~g-~KmSkS~---gn~i~~~~~~~~~~ 338 (528)
+.+++.+.|.||.. |..+---+...+ | ...|..++. +.++ .+ +| +|||||. ||.|.+.| +
T Consensus 170 ~~ad~vPvG~DQ~~-hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D-----~ 243 (388)
T 3prh_A 170 YGTDLVPPGEDQKQ-HLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD-----E 243 (388)
T ss_dssp TTCCEECCCSSCHH-HHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC-----C
T ss_pred hCCCEEEechhHHH-HHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC-----C
Confidence 35789999999974 333211111111 2 111222221 1122 23 44 6999999 89998865 5
Q ss_pred chHHHHHHHh
Q psy4049 339 SCGLRYFLLR 348 (528)
Q Consensus 339 ~d~lR~~~~~ 348 (528)
++.++==+.+
T Consensus 244 p~~I~kKI~k 253 (388)
T 3prh_A 244 PKQLEKKIKS 253 (388)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 5666655554
No 79
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=86.10 E-value=1.6 Score=43.67 Aligned_cols=57 Identities=19% Similarity=-0.019 Sum_probs=37.1
Q ss_pred CccceEeeecccchhhhHHHHHHhhcCCCCCcEEEEeeee-eeCC--CcccccC-CCccCcch
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHW-TVDG--VKMSKSV-GNVVDPMS 332 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~~~~~~~~~~hg~~-~~~g--~KmSkS~-gn~i~~~~ 332 (528)
..++.++|.||.. |..+---+...++.+.|..+ .+-++ .++| +|||||. ||.|++.|
T Consensus 243 ~a~lvpvG~DQ~~-~i~l~Rdla~r~~~~~p~~l-~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDP-FFRLARDKAKALGEKKPSSI-YVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHTCCCCEEE-EECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHH-HHHHHHHHHHHcCCCCceee-ccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 4678899999964 33332222334566555533 45555 5788 6999998 78998866
No 80
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=85.60 E-value=1.1 Score=43.85 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=36.9
Q ss_pred CccceEeeecccchhhhHHHHHHhhc----C--CCCCcEEEE-e-eee-ee-CC-CcccccCC---CccCcchhhhhcCc
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAA----G--LEPPKSFLV-H-SHW-TV-DG-VKMSKSVG---NVVDPMSKLSDFTS 339 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~----~--~~~~~~~~~-h-g~~-~~-~g-~KmSkS~g---n~i~~~~~~~~~~~ 339 (528)
..++.+.|.||.. |..+---+...+ | ...|..++. | .++ -+ +| +|||||.+ |.|.+.| ++
T Consensus 152 ~ad~vpvG~DQ~~-hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D-----~p 225 (346)
T 3n9i_A 152 QTNQVPVGEDQKQ-HLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE-----DP 225 (346)
T ss_dssp TCSEECCCGGGHH-HHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS-----CH
T ss_pred CceEEEeccchHH-HHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC-----CH
Confidence 5679999999974 333311111112 2 123333332 2 223 24 67 59999997 6887765 45
Q ss_pred hHHHHHHH
Q psy4049 340 CGLRYFLL 347 (528)
Q Consensus 340 d~lR~~~~ 347 (528)
+.++-=+.
T Consensus 226 ~~i~kKI~ 233 (346)
T 3n9i_A 226 KSVVKKIK 233 (346)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 81
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=85.18 E-value=0.71 Score=45.80 Aligned_cols=67 Identities=22% Similarity=0.091 Sum_probs=37.5
Q ss_pred CccceEeeecccchhhhHHHHHHhhcC----CCCCcEEEEeeee-eeCCCcccccCCC-ccCcchhhhhcCchHHHHHHH
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIAAG----LEPPKSFLVHSHW-TVDGVKMSKSVGN-VVDPMSKLSDFTSCGLRYFLL 347 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~~~----~~~~~~~~~hg~~-~~~g~KmSkS~gn-~i~~~~~~~~~~~d~lR~~~~ 347 (528)
...+.+.|.||.. |..+---+..-++ .+.|. ..++-++ -++|+|||||..| .|.+.| +++.+|==+.
T Consensus 208 ~a~~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P~-~~~~~~~pgldG~KmS~S~~ns~I~l~D-----~p~~i~kKI~ 280 (372)
T 3a04_A 208 RHVVVPVGADQDP-HLRLTRDLADRMAGVVELERPA-STYHKLQPGLDGRKMSSSRPDSTIFLTD-----PPEVARNKLF 280 (372)
T ss_dssp CCEEEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCCE-EEEECCCBCTTSSBCCTTSGGGSCBTTC-----CHHHHHHHHH
T ss_pred cceecccchhhHH-HHHHHHHHHHHhcCcccccChh-hhhhcccCCCCCCccCCCCCCcccccCC-----CHHHHHHHHh
Confidence 4457889999974 4333111122233 33443 3334444 4789999999844 666554 4555554444
No 82
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=82.72 E-value=0.76 Score=44.97 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=38.7
Q ss_pred CccceEeeecccchhhhHHHHHHhh----cCC-----CCCcEEEE--eeee-ee-CC-CcccccC---CCccCcchhhhh
Q psy4049 274 PPHIQILGKDILKFHGIYWPAFLIA----AGL-----EPPKSFLV--HSHW-TV-DG-VKMSKSV---GNVVDPMSKLSD 336 (528)
Q Consensus 274 ~~di~~~G~D~~~~h~~~~~a~~~~----~~~-----~~~~~~~~--hg~~-~~-~g-~KmSkS~---gn~i~~~~~~~~ 336 (528)
..++.+.|.||.. |..+---+... .|. ..|..++. +.++ .+ +| +|||||. +|.|.+.|
T Consensus 143 ~ad~vpvG~DQ~~-hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D---- 217 (341)
T 3sz3_A 143 GAHQVPVGSDQKQ-HLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE---- 217 (341)
T ss_dssp TCSEECCCGGGHH-HHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC----
T ss_pred CCCEEEeccchHH-HHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC----
Confidence 5679999999975 33331111111 121 22333332 2233 34 56 6999999 78998765
Q ss_pred cCchHHHHHHHh
Q psy4049 337 FTSCGLRYFLLR 348 (528)
Q Consensus 337 ~~~d~lR~~~~~ 348 (528)
+++.++-=+.+
T Consensus 218 -~p~~i~kKI~~ 228 (341)
T 3sz3_A 218 -DPKSIIKKINK 228 (341)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHhhh
Confidence 55666655554
No 83
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=78.59 E-value=1.7 Score=42.69 Aligned_cols=65 Identities=6% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccC
Q psy4049 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYT 93 (528)
Q Consensus 14 ~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d 93 (528)
-|||.|||||..+.+.. +.++. . |+++.+..+ |.|+.-. ..+|+++ ..+...+..++.+.|++++
T Consensus 12 ~PTG~lHLGn~vg~l~~--~~~lQ--~--~~~~~~~Ia-D~ha~~~-------~~d~~~i-~~~~~~~~~~~lA~Gldp~ 76 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQS--LIELQ--E--QCQLFVFVA-DLHSITV-------DFQPQAL-KQNNFDLVRTLLAVGLDPQ 76 (348)
T ss_dssp CCCTTCBHHHHHHTGGG--HHHHH--H--HSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--h--CCcEEEEEc-ChhhccC-------CCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence 35589999999876521 11222 3 677755543 2222110 1345543 3345566677888999987
No 84
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=78.54 E-value=4.2 Score=40.90 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=37.5
Q ss_pred CCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCC--cchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy4049 14 YVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTGTDE--HGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDI 90 (528)
Q Consensus 14 ~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~--~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i 90 (528)
-|||+ |||||+.. .-.+.+++ .. |++++++.|=.+ .|+|.-....+.-.+++++ .++...+++++.++ +
T Consensus 40 dPTg~sLHlGh~v~---l~~~~~lQ-~~--G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i-~~n~~~~~~~~~~~-l 111 (420)
T 1jil_A 40 DPTADSLHIGHLLP---FLTLRRFQ-EH--GHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV-DKNIEGISKQMHNI-F 111 (420)
T ss_dssp CCSSSSCBHHHHHH---HHHHHHHH-HT--TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHHHH-S
T ss_pred CCCCCCccHHHHHH---HHHHHHHH-HC--CCcEEEEEcCceeEecCCCccccccccCCHHHH-HHHHHHHHHHHHHH-h
Confidence 45678 99999763 23345554 46 899887765222 1332101111112245443 45556666666666 5
Q ss_pred cc
Q psy4049 91 EY 92 (528)
Q Consensus 91 ~~ 92 (528)
++
T Consensus 112 d~ 113 (420)
T 1jil_A 112 EF 113 (420)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 85
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=76.80 E-value=4.4 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=21.6
Q ss_pred CCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 14 YVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 14 ~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
-|||+ |||||+.. + -.+.+++ .. |++++++.|
T Consensus 72 dPTg~sLHlGhlv~-l--~~l~~lQ-~~--G~~~~~lIg 104 (392)
T 1y42_X 72 DPTAPSLHVGHLLP-L--MPLFWMY-LE--GYKAFTLIG 104 (392)
T ss_dssp CCCSSSCBGGGHHH-H--HHHHHHH-HH--TCEEEEEEC
T ss_pred cCCCCCccHHHHHH-H--HHHHHHH-Hc--CCcEEEEEc
Confidence 45678 99999773 2 2345554 45 898887765
No 86
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=76.68 E-value=1.9 Score=41.78 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=24.7
Q ss_pred cEEEECCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 5 TCFITTPIFYVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 5 ~~~v~~~~P~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
+..|.++. -|||. |||||+.. .-.+.+++ .. |+++.++.|
T Consensus 33 ~~~vy~G~-~PTg~slHlGh~l~---l~~~~~lQ-~~--g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGF-DPTADSLHLGHLVP---LLCLKRFQ-QA--GHKPVALVG 73 (322)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH---HHHHHHHH-HT--TCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHHH---HHHHHHHH-Hc--CCcEEEEEc
Confidence 33443333 45678 99999762 23344444 55 898877766
No 87
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=74.35 E-value=6 Score=39.93 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=25.3
Q ss_pred CcEEEECCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 4 STCFITTPIFYVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 4 ~~~~v~~~~P~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
++..|..+. -|||+ |||||+-. .-.+.+++ .. |+++.+..|
T Consensus 36 ~~~~vy~G~-dPTg~sLHlGh~v~---l~~l~~lQ-~~--G~~~i~lIg 77 (432)
T 1h3f_A 36 RPLTVKLGA-DPTRPDLHLGHAVV---LRKMRQFQ-EL--GHKVVLIIG 77 (432)
T ss_dssp SCCEEEEEE-CTTCCSCBHHHHHH---HHHHHHHH-HT--TCEEEEEEC
T ss_pred CCcEEEEcc-cCCCCCCchhhHHH---HHHHHHHH-HC--CCCEEEEEc
Confidence 444444444 56664 99999762 34455555 45 898877665
No 88
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=73.71 E-value=2.2 Score=42.88 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 14 YVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 14 ~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
-|||+ |||||+.. .-.+.+++ .. |+++.++.|
T Consensus 38 dPTg~sLHlGh~v~---l~~l~~lQ-~~--G~~~i~lIg 70 (419)
T 2ts1_A 38 DPTADSLHIGHLAT---ILTMRRFQ-QA--GHRPIALVG 70 (419)
T ss_dssp CCSSSSCBGGGHHH---HHHHHHHH-HT--TCEEEEEEC
T ss_pred CCCCCCccHHHHHH---HHHHHHHH-HC--CCcEEEEEc
Confidence 45678 99999763 23455554 46 899887765
No 89
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=72.99 E-value=2.8 Score=41.21 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=24.1
Q ss_pred EEEECCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 6 CFITTPIFYVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 6 ~~v~~~~P~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
..|.++. -|||+ |||||+. .+. .+.+++ .. |+++.++.|
T Consensus 47 ~~vy~G~-~PTg~sLHLGhl~-~l~--~~~~lQ-~~--G~~~~~lIa 86 (356)
T 2pid_A 47 QTIYCGF-DPTADSLHVGHLL-ALL--GLFHLQ-RA--GHNVIALVG 86 (356)
T ss_dssp CEEEEEE-CCSSSSCBHHHHH-HHH--HHHHHH-HT--TCEEEEEEC
T ss_pred CEEEEee-cCCCCcccHHHHH-HHH--HHHHHH-HC--CCcEEEEEc
Confidence 4444443 56686 9999944 333 355555 45 899877765
No 90
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=72.55 E-value=7.3 Score=41.84 Aligned_cols=69 Identities=9% Similarity=-0.060 Sum_probs=45.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q psy4049 15 VNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEY 92 (528)
Q Consensus 15 ~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~ 92 (528)
++|.+||||+-... -+++.|++..+ |++|.++.+-+ +.. .-++.|.+++ -+..+.....+++..+|.+.
T Consensus 390 s~g~lHLGh~v~~~--k~l~~~~~~~~-g~~v~ilIaD~-~A~----i~d~~g~~~e-~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 390 ALLKVPLDVAEGMI--KVTKDFIAAHP-EGTVTLVLPDW-SAV----ASDEITGVEK-DISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CCSSCBHHHHHHHH--HHHHHHHHHCS-SCEEEEEECTT-HHH----HTTCTTCCHH-HHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcccchHHHHH--HHHHHHHHHcC-CCeEEEEEecc-hhh----hCCCCCCCHH-HHHHHHHHHHHHHHhcCCCc
Confidence 78999999987653 24667888865 88887777533 211 1123355544 45555677888999999864
No 91
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=70.45 E-value=2.9 Score=42.14 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=24.3
Q ss_pred cEEEECCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeec
Q psy4049 5 TCFITTPIFYVNAS-PHIGHLYTALLADATHRFVKLVNPRISSILTTG 51 (528)
Q Consensus 5 ~~~v~~~~P~~nG~-lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g 51 (528)
+..|.++. -|||+ |||||+. .+. .+.+++ .. |++++++.|
T Consensus 32 ~~~iy~G~-dPTg~sLHLGhlv-~l~--~l~~lQ-~~--G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGF-DPTAPSLHAGHLV-PLL--TLRRFQ-RA--GHRPIVLAG 72 (432)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHH-HHH--HHHHHH-HT--TCEEEEEEC
T ss_pred CCEEEEee-CCCCCCcCHHHHH-HHH--HHHHHH-HC--CCcEEEEEc
Confidence 33443333 56675 9999944 332 355555 45 899888764
No 92
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=45.92 E-value=18 Score=31.87 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcc
Q psy4049 99 TSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESF 136 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~ 136 (528)
.+..|......++.+|.......+.....|.|+.|+-.
T Consensus 127 ~E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~ 164 (191)
T 1lko_A 127 AEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYV 164 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCE
T ss_pred HHHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCE
Confidence 45668888888888877644444555678999999854
No 93
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=36.05 E-value=32 Score=29.68 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeeccceeeccccCcCcc
Q psy4049 99 TSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESF 136 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~L~~~g~iy~~~~~~~~~~~~~~~ 136 (528)
.+..|.+....++..+ ++|..+. ....|-|+.|+-.
T Consensus 112 ~E~~H~~~~~~~l~~l-~~~~~~~-~~~~~~C~~CG~i 147 (170)
T 3pwf_A 112 AEKIHAELYRKAKEKA-EKGEDIE-IKKVYICPICGYT 147 (170)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCCCC-CSCEEECTTTCCE
T ss_pred HHHHHHHHHHHHHHHH-hcCCcCC-CCCeeEeCCCCCe
Confidence 4667888888887777 5666664 3467779999743
No 94
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=35.03 E-value=17 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCCeeEEeecCCC------cchHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4049 28 LLADATHRFVKLVNPRISSILTTGTDE------HGLKIQNAAIKHKLETIDFCNKISDQY 81 (528)
Q Consensus 28 v~~D~~~R~lr~~~~G~~v~~v~g~d~------~g~~i~~~a~~~g~~~~~~~~~~~~~~ 81 (528)
.++|++++|-+.. +|+.-.|+|| .+..++.++...|+++.++.+...+.+
T Consensus 8 tI~eIv~~~P~~~----~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 8 IIADVLQMDRGTA----PIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYF 63 (76)
T ss_dssp BHHHHHHHCGGGH----HHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHCHHHH----HHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4566666654444 4444455555 246788999999999988877665544
No 95
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=29.51 E-value=15 Score=26.78 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCCeeEEeecCCC---cc---hHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy4049 29 LADATHRFVKLVNPRISSILTTGTDE---HG---LKIQNAAIKHKLETIDFCNKISDQYK 82 (528)
Q Consensus 29 ~~D~~~R~lr~~~~G~~v~~v~g~d~---~g---~~i~~~a~~~g~~~~~~~~~~~~~~~ 82 (528)
++|++++|-+.. +|+.-.|+|+ .| ..++.++...|+++.++.+...+.+.
T Consensus 11 I~eiv~~~P~~~----~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~ 66 (73)
T 2k5e_A 11 FAQALQTHPGVA----GVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALAL 66 (73)
T ss_dssp HHHHHHHCTHHH----HHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHH----HHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455555554443 4444444453 33 56788899999999988877665443
No 96
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=27.75 E-value=62 Score=17.73 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.8
Q ss_pred hhhHHHH-HHHHHHHHHHHH
Q psy4049 20 HIGHLYT-ALLADATHRFVK 38 (528)
Q Consensus 20 HiGH~~~-~v~~D~~~R~lr 38 (528)
|+|-++. .++.|-+.++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 8999986 588999998764
No 97
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=25.07 E-value=80 Score=26.20 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=24.9
Q ss_pred cEEEECCCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCeeEEeecCCCc
Q psy4049 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEH 55 (528)
Q Consensus 5 ~~~v~~~~P~~nG~lHiGH~~~~v~~D~~~R~lr~~~~G~~v~~v~g~d~~ 55 (528)
++-|+++... ++|.||+. ++.+..+ . .-+|.++...+.+
T Consensus 2 ~i~i~~GsFD---pvH~GH~~------l~~~a~~-~--~d~v~v~~~~~p~ 40 (158)
T 1qjc_A 2 KRAIYPGTFD---PITNGHID------IVTRATQ-M--FDHVILAIAASPS 40 (158)
T ss_dssp CEEEEEECCT---TCCHHHHH------HHHHHHT-T--SSEEEEEEESCCS
T ss_pred CEEEEEecCC---CCCHHHHH------HHHHHHH-h--CCEEEEEECCCCC
Confidence 4567777766 59999986 3333333 3 4567777776644
Done!