RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4049
(528 letters)
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 475 bits (1225), Expect = e-164
Identities = 196/526 (37%), Positives = 268/526 (50%), Gaps = 57/526 (10%)
Query: 4 STCFITTPIFYVNASPHIGHLYTALLADATHRFVKL----VNPRISSILTTGTDEHGLKI 59
+ITTPI+Y N PHIGH YT L AD RF +L V TGTDEHG KI
Sbjct: 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDV------FFLTGTDEHGQKI 54
Query: 60 QNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDS 119
Q A + + + ++ S +K +++ +I Y ++RTT H V ++ +L
Sbjct: 55 QRKAEEAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGD 114
Query: 120 IYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVE 179
IY KY+GWYCV E F E ++ D Y + PVE
Sbjct: 115 IYLGKYEGWYCVRCEEFYTESELIEDG----------------------YRCPPTGAPVE 152
Query: 180 WVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHW 239
WVEE++Y F+LS Y + + + N D ++P N++ + D+S+SR W
Sbjct: 153 WVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISR--TNFDW 210
Query: 240 GIPVPDDDTQTIYVWLDALMNYLTVSGYPD--------FHT-WPPHIQILGKDILKFHGI 290
GIPVP D IYVW DAL NYLT GYPD F+ WP + ++GKDIL+FH +
Sbjct: 211 GIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAV 270
Query: 291 YWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREG 350
YWPAFL+AAGL PK H T+DG KMSKS+GNV+DP + ++ +RYFLLRE
Sbjct: 271 YWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREI 330
Query: 351 TNHSDSNYSETKAKNILNAELANTLGNLLNRCLS---KSINPDNVNPLVNRECYEVMFTK 407
D ++S N +NA+LAN LGNL R LS K N D P
Sbjct: 331 PFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK--NFDGKVPEPGALTEA----- 383
Query: 408 EPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIE 467
L+E L E V+ F K +++I+ ++ ANK+ID PW+L K + E
Sbjct: 384 ---DEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKTDP-E 439
Query: 468 ELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDN 513
L VL EVLR + LQP++P+LA K+L +LG+ +E
Sbjct: 440 RLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFA 485
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 428 bits (1102), Expect = e-145
Identities = 183/541 (33%), Positives = 264/541 (48%), Gaps = 47/541 (8%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+TT + Y N PH+GHLYT L AD R+++L TGTDEHG KI+
Sbjct: 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRG--YEVFFLTGTDEHGTKIELK 61
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A K + + +K +++K +FK +I + +++RTTS H V + KL + IY
Sbjct: 62 AEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL 121
Query: 123 NKYKGWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPD--EKNEGQYVSIESNQP 177
+Y+G YCVS E FL + + P E+ R D E E P
Sbjct: 122 REYEGLYCVSCERFLPDRYVEGTCPKCGGED--------ARGDQCENCGRTLDPTELINP 173
Query: 178 VEWV--------EEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDIS 229
V + EE++Y F+LS + + + W + N D + P N++ N E D+S
Sbjct: 174 VCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLS 233
Query: 230 VSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHT--------WPPH----I 277
++R + WGIPVP D + IYVW DAL+ Y++ G WP +
Sbjct: 234 ITRT--DLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELV 291
Query: 278 QILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDF 337
+GKDI++FH +YWPA L+AAGL P H T++G KMSKS GNVVDP L +
Sbjct: 292 HFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQY 351
Query: 338 TSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK-SINPDNVNPLV 396
LRY+L RE SD ++S +NA+LAN LGNL NR L + D V P
Sbjct: 352 GVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVP-- 409
Query: 397 NRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTK 456
EL+ + E V ++ F K ++ I+ + ANK+ID
Sbjct: 410 -----AAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQA 464
Query: 457 PWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERL--WDNM 514
PW L KE+K E L VL + E++R+ I L P +P+ A+K+ +LG+ + R W
Sbjct: 465 PWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGA 524
Query: 515 R 515
R
Sbjct: 525 R 525
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 430 bits (1109), Expect = e-145
Identities = 188/523 (35%), Positives = 273/523 (52%), Gaps = 46/523 (8%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
K T +ITTPI+Y N PHIGH YT + ADA R+ +L + TGTDEHG KIQ A
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDV--FFLTGTDEHGQKIQQA 60
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A K ++ ++IS +K ++K DI Y ++RTT E H + V ++ KL ++ IY
Sbjct: 61 AEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
+Y+GWYCVS E+F E Q L++ PD + VE V+
Sbjct: 121 GEYEGWYCVSCETFFTESQ------------LVDGGKCPD-----------CGREVELVK 157
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQ-LRNMCSEIENDISVSRPKARVHWGI 241
E++Y F++S Y + + + ++N D ++P+ N+ + N D+S+SR WGI
Sbjct: 158 EESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISR--TSFDWGI 215
Query: 242 PVPDDDTQTIYVWLDALMNYLTVSGYP-----DFHT-WPPHIQILGKDILKFHGIYWPAF 295
PVP D +YVW+DAL+NY+T GY F WP + ++GKDIL+FH IYWP
Sbjct: 216 PVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIM 275
Query: 296 LIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355
L+A GL PK H W + KMSKS GNVVDP + + LRY+LLRE SD
Sbjct: 276 LMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSD 335
Query: 356 SNYSETKAKNILNAELANTLGNLLNRCLSKSINP--DNVNPLVNRECYEVMFTKEPVLTE 413
++S +N++LAN LGNLLNR ++ IN D P E
Sbjct: 336 GDFSPEALVERINSDLANDLGNLLNRTVAM-INKYFDGEIPAPG--------NVTEFDEE 386
Query: 414 LIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRK-ENKIEELNLV 472
LI + ++ + E F + ++ + ++ ANK+ID T PW L K E K E L V
Sbjct: 387 LIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATV 446
Query: 473 LGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMR 515
+ E LR + L P +P+ + K+ +LG+ W+++
Sbjct: 447 MYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEELTSWESLL 489
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 370 bits (953), Expect = e-125
Identities = 148/394 (37%), Positives = 212/394 (53%), Gaps = 22/394 (5%)
Query: 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK 65
ITT + YVN PHIGHLYT + AD R+++L + TGTDEHG KI+ AA K
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRG--YDVLFVTGTDEHGTKIELAAEK 58
Query: 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY 125
+ + ++ +++K +FK ++I + ++RTTSE H V + KL ++ IY +Y
Sbjct: 59 EGVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEY 118
Query: 126 KGWYCVSEESFLLEHQIR---PDEKNEE-ESFLLEHQIRPDEKNEGQY-VSIESNQPVEW 180
+GWYCVS+E FL + + P +E+ E RP E E S S E
Sbjct: 119 EGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPEL 178
Query: 181 VEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWG 240
EE++Y F+LS + + + W+ +N D P + + E D+S++R + WG
Sbjct: 179 KEEEHYFFRLSKFQDKLLEWIKENPDE-PPSNVNEVVLSWLKEGLKDLSITR---DLDWG 234
Query: 241 IPVPDDDTQTIYVWLDALMNYLTVSGYP-----DFHTW------PPHIQILGKDILKFHG 289
IPVP D + IYVW DAL+ Y++ + Y + + + +GKDI++FH
Sbjct: 235 IPVPGDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHA 294
Query: 290 IYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLRE 349
IYWPA L+AAGL P H TV+G KMSKS GNVVDP L + LRY+L RE
Sbjct: 295 IYWPAMLMAAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLARE 354
Query: 350 GTNHSDSNYSETKAKNILNAELANTLGNLLNRCL 383
D ++S +N+ELAN LGNL+NR L
Sbjct: 355 APEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 351 bits (903), Expect = e-118
Identities = 131/363 (36%), Positives = 188/363 (51%), Gaps = 53/363 (14%)
Query: 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI 64
ITT + YVN PH+GHLY +LAD R+ +L + TGTDEHG KI+ A
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRG--YDVLFVTGTDEHGTKIEQKAE 58
Query: 65 KHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK 124
+ + + C+K + +K +FK +I + +++RTTS H V + KL + IY +
Sbjct: 59 EEGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGE 118
Query: 125 YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQ 184
Y+G YCVS E FL EW EE+
Sbjct: 119 YEGLYCVSCERFL----------------------------------------PEWREEE 138
Query: 185 NYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP 244
+Y F+LS + + + WL+KN D + P+ N++ + E D+S++R WGIPVP
Sbjct: 139 HYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLF--DWGIPVP 196
Query: 245 DDDTQTIYVWLDALMNYLTVSGYPD---------FHTWPPHIQILGKDILKFHGIYWPAF 295
D + IYVW DAL+ Y++ +GY + WP + +GKDI++FH IYWPA
Sbjct: 197 LDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAM 256
Query: 296 LIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355
L+ AGL P + H + TV+G KMSKS GNVVDP L + + LRY+LLRE D
Sbjct: 257 LLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKD 316
Query: 356 SNY 358
S++
Sbjct: 317 SDF 319
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 356 bits (915), Expect = e-117
Identities = 168/525 (32%), Positives = 256/525 (48%), Gaps = 46/525 (8%)
Query: 6 CFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK 65
ITT + Y N PH+GH YT +LAD R+ +L + GTDEHG KI+ A +
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRG--YEVLFVCGTDEHGTKIELKAEQ 58
Query: 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY 125
L + +K +++K +K +I + ++RTT E H V ++ KLK+ IY +
Sbjct: 59 EGLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEI 118
Query: 126 KGWYCVSEESFLLEHQIRPDE----KNEEESFLLEH------QIRPDEKNEGQYVSIESN 175
K YC E FL + R E K E +H + P E +
Sbjct: 119 KQLYCPECEMFLPD---RYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPR--CKICG 173
Query: 176 QPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKP-KKFYNQLRNMCSEIENDISVSRPK 234
E + ++Y F+LS + ++ W+ KN + P N+ +N D++++R
Sbjct: 174 AKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDL 233
Query: 235 ARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGY-----PDFHTWPPH------IQILGKD 283
WGIPVP+D + +YVW DAL+ Y++ G D+ W + I +GKD
Sbjct: 234 VY--WGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKD 291
Query: 284 ILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLR 343
I++FH IYWPA L+ GL P H + TV+G KMSKS+GNVVDP L+ F + LR
Sbjct: 292 IVRFHTIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILR 351
Query: 344 YFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEV 403
Y+LL+E D ++S +NA+LAN LGNLLNR L + + V
Sbjct: 352 YYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLG----------FIKKYFNGV 401
Query: 404 MFTKEPV---LTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTL 460
+ +++ +L++ E + F F K + I+ + NK+ID KPW L
Sbjct: 402 LPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWEL 461
Query: 461 RKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIP 505
K++ L +L V ++R+ I L PI+PKL++K+L L
Sbjct: 462 FKQSP--RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 304 bits (779), Expect = 3e-96
Identities = 181/528 (34%), Positives = 276/528 (52%), Gaps = 53/528 (10%)
Query: 5 TCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI 64
T +TTP++YVNA PH+G YT + AD+ RF +L+ ++ I TGTDEHG KI +A
Sbjct: 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKV--IFITGTDEHGEKIATSAA 127
Query: 65 KHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK 124
+ + C+ IS Y+ ++K DI Y ++RTT H V + ++ IY
Sbjct: 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRAD 187
Query: 125 YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQ 184
Y+G YCV+ E + K+E+E LLE+ P + P +E
Sbjct: 188 YEGLYCVNCEEY----------KDEKE--LLENNCCPVHQ-----------MPCVARKED 224
Query: 185 NYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP 244
NY F LS Y + L +N V+P N++++ D S+SR A V WGIPVP
Sbjct: 225 NYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISR--ALVDWGIPVP 282
Query: 245 DDDTQTIYVWLDALMNYLTV----SGYPDFHT-----WPPHIQILGKDILKFHGIYWPAF 295
DDD QTIYVW DAL+ Y++ + + T WP + ++GKDIL+FH +YWPA
Sbjct: 283 DDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAM 342
Query: 296 LIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSD 355
L++AGLE PK H T DG+KM KS+GN ++P + F +RYF LRE +D
Sbjct: 343 LMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGND 402
Query: 356 SNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTE-- 413
+YSE + I+NA LANT+GNLLNR L L+ + C + V E
Sbjct: 403 GDYSEDRFIKIVNAHLANTIGNLLNRTLG----------LLKKNCESTLVEDSTVAAEGV 452
Query: 414 -LIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKI--EELN 470
L + + L E + +Y + ++++ + + N ++D PW L K+ + EE
Sbjct: 453 PLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAA 512
Query: 471 LVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRFSD 518
L + EV+R+ + L PI P L+ ++ ++LG ++ ++++ +SD
Sbjct: 513 KDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQ--FNSITWSD 558
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 264 bits (678), Expect = 8e-82
Identities = 142/542 (26%), Positives = 235/542 (43%), Gaps = 62/542 (11%)
Query: 7 FITTPIFYVNASPHIGHLYTALL-ADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK 65
IT+ Y N H+GHL + L AD R+ +L + + +G+DEHG I+ AA K
Sbjct: 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFV--SGSDEHGTPIELAAKK 63
Query: 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY 125
+ + +K +++K FK I Y + RTTS +H V + KL + IY
Sbjct: 64 EGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTI 123
Query: 126 KGWYCVSEESFLLEHQI------------RPDEKNEEESFLLEHQ--IRPDEKNEGQYVS 171
+ YC S+ FL + + R D+ + LL+ I P S
Sbjct: 124 EQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQ-CDNCGALLDPTDLINP--------RS 174
Query: 172 IESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVS 231
S E+ E +++ L + + W++ + D P N N E +++
Sbjct: 175 KISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDW--PPNVLNFTLNWLKEGLKPRAIT 232
Query: 232 RPKARVHWGIPVP--DDDTQTIYVWLDALMNYLTVSGY--------PDFHTW-----PPH 276
R WGIPVP + + YVW DA++ Y++ S + +
Sbjct: 233 RDLD---WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKS 289
Query: 277 IQILGKDILKFHGIYWPAFLIAAG--LEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKL 334
+GKD + FH I WPA L+ +G L+ P + + T++G K SKS G + L
Sbjct: 290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDAL 349
Query: 335 SDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNP 394
+ LRY+L +SD++++ + +N+ELA+ GNL+NR LS
Sbjct: 350 ERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLS---------- 399
Query: 395 LVNRECYEVM--FTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFI 452
+ + ++ ELI + L ++V F K ++ I+ + ANK++
Sbjct: 400 FIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYL 459
Query: 453 DTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERL-W 511
D PW L K ++ E VL ++R+ + L P +P A K+ LG E+L W
Sbjct: 460 DEKAPWKLAKTDR-ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTW 518
Query: 512 DN 513
++
Sbjct: 519 ES 520
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 208 bits (532), Expect = 1e-59
Identities = 131/553 (23%), Positives = 213/553 (38%), Gaps = 93/553 (16%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T + Y N H+GHL + AD R+ ++ + + D HG I A K
Sbjct: 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFV--CADDAHGTPIMLKAEKE 62
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ + + ++K F + I + +Y T SE + ++ KLK+ IY +
Sbjct: 63 GITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIE 122
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIR------PDEKNEGQY----------- 169
Y + FL PD R P E QY
Sbjct: 123 QLYDPEKGMFL------PD--------------RFVKGTCPKCGAEDQYGDNCEVCGATY 162
Query: 170 --------VSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMC 221
S S E +++ FKL + + W+ ++ ++ +P + N
Sbjct: 163 SPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGEL-QP-----NVANKM 216
Query: 222 SE-IENDIS---VSRPKARVHW-GIPVPDDDTQTIYVWLDA-------LMNYLTVSGYPD 269
E +E + +SR + G +P + YVWLDA N G D
Sbjct: 217 KEWLEEGLQDWDISRD---APYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLD 273
Query: 270 FHT-WPPH-----IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKS 323
+ W +GKDI+ FH ++WPA L AG P + H TV+G KMSKS
Sbjct: 274 WDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKS 333
Query: 324 VGNVVDPMSKLSDFTSCGLRYFL---LREGTNHSDSNYSETKAKNILNAELANTLGNLLN 380
G + + L LRY+L L E + D N+ + + + N+EL + N +
Sbjct: 334 RGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRV--NSELVGKVVNFAS 391
Query: 381 RCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDS 440
R +N+ + EL+E + E + Y F K +
Sbjct: 392 RTAG----------FINKRFDGKLPDALADP-ELLEEFEAAAEKIAEAYEAREFRKALRE 440
Query: 441 IILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLT 500
I+ + ANK++D +PW L K++ E L V V + R I L+P++P+LA++
Sbjct: 441 IMALADFANKYVDDNEPWKLAKQDG-ERLQAVCSVGLNLFRALAIYLKPVLPELAERAEA 499
Query: 501 RLGIPTNERLWDN 513
L + WD+
Sbjct: 500 FLNLEELT--WDD 510
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 128 bits (323), Expect = 3e-33
Identities = 85/370 (22%), Positives = 141/370 (38%), Gaps = 86/370 (23%)
Query: 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-- 65
+TTP Y N S H+GH T ++AD R+ ++ + + G D HGL I+ A +
Sbjct: 4 VTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFL--PGWDTHGLPIELKAERKG 61
Query: 66 -------HKLETIDFCNKISDQYKLMFKT------YDIEYTHYVRTTSEHHFRTVNTVWT 112
E + + ++ K +++ TT + + V +++
Sbjct: 62 GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFS 121
Query: 113 KLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSI 172
+L ++ IY +G H +R E
Sbjct: 122 RLYEKGLIY----RG----------------------------THPVRITE--------- 140
Query: 173 ESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR 232
+ F + + + L + + + P+ N++ + D ++SR
Sbjct: 141 ------------QWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLL-DWAISR 185
Query: 233 PKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYP----DFHTWPPHIQIL-GKDILKF 287
+ +WG P+P+D VW D+ + L GYP F P L GKDIL+
Sbjct: 186 QR---YWGTPLPED---VFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRG 239
Query: 288 HGIYWPAFLIAAGLE-PPKSFLVHSHWTV-DGVKMSKSVGNVVDPMSKLSDFTSCGLRYF 345
+W L+A E PPK+ LVH G KMSKS GNV+DP + + + LRY+
Sbjct: 240 WANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYY 299
Query: 346 LLREGTNHSD 355
L D
Sbjct: 300 LTSLAPYGDD 309
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 117 bits (297), Expect = 1e-31
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 367 LNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEV---MFTKEPVLTELIENCQTLHE 423
+N+ELAN LGNL+NR L+ + ++ V EL+E + L E
Sbjct: 1 INSELANNLGNLVNRTLN----------MASKYFGGVVPEFGGLTEEDEELLEEAEELLE 50
Query: 424 DVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRIC 483
+V E F K ++ I+ + ANK+ID T PW L KE E L VL V E+LRI
Sbjct: 51 EVAEAMEELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRIL 110
Query: 484 GIGLQPIVPKLADKLLTRL 502
I L P +P+ A+K+L +L
Sbjct: 111 AILLSPFMPETAEKILDQL 129
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 129 bits (325), Expect = 2e-31
Identities = 131/542 (24%), Positives = 240/542 (44%), Gaps = 73/542 (13%)
Query: 8 ITTPIFYVNASPHIGHLYTALL-ADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
IT+ + YVN PH+G++ +L AD R+ +L ++I GTDE+G + A++
Sbjct: 21 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRG--YNAIYICGTDEYGTATETKALEE 78
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ C+K +K ++ +DI + + RT++ ++ KL + + + N +
Sbjct: 79 NCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQ 138
Query: 127 GWYCVSEESFLLEHQIR---PDEKNEEESF------LLEHQIRPDEKNEGQYVSIESNQP 177
YC + + FL + + P E +S + P E + + + N P
Sbjct: 139 QLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPK-CKVCKNTP 197
Query: 178 VEWVEEQNYMF--------KLSNYIND--VAHWLDKNEDVVKPKKFYNQLRNMCSEIEND 227
+ + +++F KL YIN+ VA +N + L+ C I D
Sbjct: 198 R--IRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRC--ITRD 253
Query: 228 ISVSRPKARVHWGIPVPDD--DTQTIYVWLDALMNYLTV-SGY-PDFHTW---PPHI--- 277
+ WG+PVP + + YVW DA + Y+++ + Y P++ W P ++
Sbjct: 254 LK---------WGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELY 304
Query: 278 QILGKDILKFHGIYWPAFLIAAGLEP---PKSFLVHSHWTVDGVKMSKSVG-NVVDPMSK 333
Q +GKD + FH + +P+ L+ G E K+ V + +G K SKS G V +K
Sbjct: 305 QFMGKDNVPFHTVMFPSTLLGTG-ENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAK 363
Query: 334 LSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLS--------- 384
++ RY+LL SD+ ++ + LN+EL N LGN +NR LS
Sbjct: 364 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAG 423
Query: 385 -KSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIIL 443
S+ PD E + + + +L+E E VKL +G+ + +
Sbjct: 424 YGSVIPDAPGA----ESHPLTKKLAEKVGKLVEQYVEAMEKVKLK-------QGLKTAMS 472
Query: 444 VLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLG 503
+ N ++ ++ W L KE+K +V+ + ++ + L+P +P + ++L +L
Sbjct: 473 ISSEGNAYLQESQFWKLYKEDK-PSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLN 531
Query: 504 IP 505
+P
Sbjct: 532 LP 533
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 69.6 bits (171), Expect = 5e-13
Identities = 77/346 (22%), Positives = 121/346 (34%), Gaps = 84/346 (24%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+I Y + + H+GH+ T + D R+ ++ + + G D GL +NAAIK
Sbjct: 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNV--LFPMGFDAFGLPAENAAIKI 60
Query: 67 KLETIDFCNKISDQYKLMFKT--YDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNK 124
+ D+ + K K + ++ T +++ ++ KL ++ Y +
Sbjct: 61 GRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKE 120
Query: 125 YKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQ 184
+C + + L++ EW E
Sbjct: 121 APVNWCKLLDQWFLKYSET-----------------------------------EWKE-- 143
Query: 185 NYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP 244
KL + + W E+V R M EN I SR + +WG P+P
Sbjct: 144 ----KLLKDLEKLDGW---PEEV----------RAM---QENWIGCSR---QRYWGTPIP 180
Query: 245 DDDT------QTIYV-------WLDALMNYLTVSGYPDFHTW-PPHIQILGKDILKFH-- 288
DT T Y L+ +F W P I I GK+ H
Sbjct: 181 WTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLL 240
Query: 289 -GIYWPAFLIAAGL---EPPKSFLVHSHWTVDGVKMSKSVGNVVDP 330
+ L GL EPPK +V ++G KMSKS GNVV P
Sbjct: 241 YSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTP 286
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 63.2 bits (154), Expect = 2e-10
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 16/212 (7%)
Query: 297 IAAGLEPPKSFLVHSHWTVD--GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHS 354
G P K+ + H T+D G KMSKS+GNVVDP+ ++ + + LR ++ ++
Sbjct: 588 ALFGQAPYKNVITHGF-TLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVAS--SDPW 644
Query: 355 DSN-YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTE 413
+ +S+ K ++ N R L N D +PL N E K P
Sbjct: 645 EDLRFSDEILKQVVEK-YRKIRWNTY-RFLLTYANLDKFDPLFNSVAVE----KFPEEDR 698
Query: 414 -LIENCQTLHEDVKLHYSEFNFYKGVDSI--ILVLHLANKFIDTTKPWTLRKENKIEELN 470
++ +L E+V ++NF+K + ++ +V L+N +I + L E K +
Sbjct: 699 WILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRD-RLYCEAKDNDKR 757
Query: 471 LVLGVTFEVLRICGIGLQPIVPKLADKLLTRL 502
+ L L P +P A+++ L
Sbjct: 758 AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNL 789
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 59.7 bits (145), Expect = 2e-09
Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 56/212 (26%)
Query: 210 PKKFYNQLRNMCSEIENDISVSRPKARVHWG--IPV-----------------PDDDTQT 250
PK+ + N I+ D +SR ++ WG IPV PDD T T
Sbjct: 382 PKRMEKRYLNWLRNIK-DWCISR---QLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNT 437
Query: 251 IYV------------WLDALMNYLTVSGYPDF-----HTWPPHIQILGKDILKFHGIYWP 293
W + + + G+PD +P + + G DI+ F W
Sbjct: 438 GPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFF----WV 493
Query: 294 AFLIAAGLE-----PPKSFLVHSHWTV---DGVKMSKSVGNVVDPMSKLSDFTSCGLRYF 345
A +I L P K +H V G KMSKS+GNV+DP+ + + + LR+
Sbjct: 494 ARMIFRSLALTGQVPFKEVYIHG--LVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFT 551
Query: 346 LLREGTNHSDSNYSETKAKNILNAELANTLGN 377
L T D N+ + ++ N L N
Sbjct: 552 LASLVTPGDDINFDWKRVES--ARNFLNKLWN 581
Score = 29.3 bits (66), Expect = 6.2
Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 30/141 (21%)
Query: 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH- 66
I P V S HIGH + D R+ ++ + + GTD G+ Q K
Sbjct: 37 IDIPPPNVTGSLHIGHALNWSIQDIIARYKRM--KGYNVLWLPGTDHAGIATQVKVEKKL 94
Query: 67 ----------------------KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHF 104
K E+ I +Q K + + D + T E
Sbjct: 95 GAEGKTKHDLGREEFREKIWEWKEESGG---TIKNQIKRLGASLDWSRERF--TMDEGLS 149
Query: 105 RTVNTVWTKLKQRDSIYPNKY 125
+ V + +L ++ IY +Y
Sbjct: 150 KAVKEAFVRLYEKGLIYRGEY 170
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 57.2 bits (139), Expect = 1e-08
Identities = 89/430 (20%), Positives = 152/430 (35%), Gaps = 125/430 (29%)
Query: 166 EGQYVSIESNQPV-EWVEEQNYMFKLSNYINDVAH---------------W--------- 200
EG +V ++N+ + E ++E+ + K + H W
Sbjct: 369 EGLFVK-DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRD 427
Query: 201 --LDKNEDV-VKPKKFYNQLRNMCSEIEN--DISVSRPKARVHWGIPVP---DDDTQTIY 252
L + V P N+ NM +EN D +SR + WG+P+P +T I
Sbjct: 428 KMLKEINKVNWVPDWGKNRFGNM---VENRPDWCISRQRY---WGVPIPVWYCKETGEIL 481
Query: 253 VWLDALMNY----LTVSGYPDFHTWPPHI-QILGK------------DIL---------- 285
V + L + G D+H P I ++L D+L
Sbjct: 482 VITEELEELVGQLVEEKGIDDWHR--PDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTP 539
Query: 286 -----KFHGIYWPAF---LIAAGL-------------------EPP-KSFLVHSHWTVD- 316
+ +PA G P K+ L H +D
Sbjct: 540 YAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGF-VLDE 598
Query: 317 -GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKA--KNIL--NAEL 371
G KMSKS+GNVVDP + + + LR ++ S+Y E IL E+
Sbjct: 599 KGRKMSKSLGNVVDPQDVIDKYGADILRLWVAS-------SDYWEDLRFSDEILKQVREV 651
Query: 372 ANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELI-ENCQTLHEDVKLHYS 430
+ N L N D+ +P + E + L I +L ++V+ Y
Sbjct: 652 YRKIRNTYRFLLG---NLDDFDPKKDAVLPEEL----RELDRWILSRLNSLVKEVREAYE 704
Query: 431 EFNFYKGVDSII--LVLHLANKFIDTTKP--WTLRKENKIEELNLVLGVTFEVLRICGIG 486
++F+K V +++ + L+N ++D K +T + + + +L+
Sbjct: 705 NYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTE-AADSPDRRA-AQTTLYHILKALVRL 762
Query: 487 LQPIVPKLAD 496
L PI+P A+
Sbjct: 763 LAPILPFTAE 772
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 54.6 bits (132), Expect = 9e-08
Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 31/238 (13%)
Query: 281 GKDILKFHGIYWPAFLIAAGLE-----PPKSFLVHSHWTVD--GVKMSKSVGNVVDPMSK 333
G DI+ F W A +I GL P K +H D G KMSKS GNV+DP+
Sbjct: 485 GHDIIFF----WVARMIMRGLHLTGEVPFKDVYIHG-LVRDEQGRKMSKSKGNVIDPLDV 539
Query: 334 LSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVN 393
+ + + LR+ L + D N+ E + + N L N R + +++ +
Sbjct: 540 IDKYGADALRFTLASLASPGRDINFDEKRVEG--YRNFLNKLWN-ATRFVLMNLDDLGPD 596
Query: 394 PLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSII--LVLH-LANK 450
L +L+ L ++V + F + + + + +
Sbjct: 597 DLDLLALSLA---DRWILSRL----NETVKEVTEALDNYRFDE-AARALYEFIWNDFCDW 648
Query: 451 FIDTTKPWTLRKENKIEELNLVLGVTFE-VLRICGIGLQPIVPKLADKLLTRLGIPTN 507
+++ KP E + L + +LR+ L P +P + +++ +L +
Sbjct: 649 YLELAKPRLYGGEEEKRAARATLYYVLDTLLRL----LHPFMPFITEEIWQKLPGTES 702
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 52.2 bits (126), Expect = 3e-07
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 54/182 (29%)
Query: 201 LDKNEDV-VKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP----DDD-------- 247
L+ N+ V P+ N+ N D +SR + WG P+P +D
Sbjct: 165 LEANDKVNWIPEWVKNRFGNWLEN-RRDWCISRQRY---WGTPIPVWYCEDCGEVLVRRV 220
Query: 248 TQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGL------ 301
+ VW D+ YP + +PA I G
Sbjct: 221 PDVLDVWFDSGSMPYAQLHYPFENEDFEE--------------LFPADFILEGSDQTRGW 266
Query: 302 -------------EPP-KSFLVHSHWTVD--GVKMSKSVGNVVDPMSKLSDFTSCGLRYF 345
+ P K+ +VH +D G KMSKS+GN VDP + + + LR +
Sbjct: 267 FYSLLLLSTALFGKAPYKNVIVHGF-VLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLW 325
Query: 346 LL 347
+
Sbjct: 326 VA 327
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 51.2 bits (123), Expect = 8e-07
Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 38/208 (18%)
Query: 171 SIESNQPVEWVEEQNYMFKLSNYINDVAHW---------------LDKN-EDVVKPKKFY 214
++++ + V++V + + N++ ++ W K+ +V
Sbjct: 395 ALKAVEKVQFVPKW-GEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLK 453
Query: 215 NQLRNMCSEIENDISVSRP-KARVHWGIPVPDDDTQTIYVWLD-ALMNYLTVSGYP---- 268
+ E + + R K + G + D + W + T+ GYP
Sbjct: 454 ELVAGREEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTL-GYPFTNT 512
Query: 269 -DFHTWPPHIQIL-GKDILKFHGIYWPAFLIAAGL-----EPPKSFLVHSHWTVD--GVK 319
+F + P +L G D + W +I G P K+ LVH D G K
Sbjct: 513 PEFKRFFPADMLLEGSDQTRG----WFYRMIVLGTALTGSAPYKNVLVHGL-VRDEQGRK 567
Query: 320 MSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
MSKS+GNV+DP+ + + + LR +L
Sbjct: 568 MSKSLGNVIDPLDVIDKYGADALRLWLA 595
Score = 30.4 bits (69), Expect = 2.5
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQ----------NAA 63
HIGH L D R+ ++ + G D HGL +
Sbjct: 33 NATGLLHIGHALNKTLKDIVIRYKRMQG--FDVLWVPGWDHHGLPTEQKVEKKLGIKGKK 90
Query: 64 IKHKL---ETIDFCNKISDQY 81
+HKL + + C + +Y
Sbjct: 91 DRHKLGREKFREKCREWKMEY 111
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 50.7 bits (121), Expect = 2e-06
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 222 SEIENDISVSR------PKARVHWGIPVP-DDDTQTIYVWLDALMNYLTVSGYPDF---- 270
+ E D V+R KAR +G V D + W + + + G+PD
Sbjct: 471 KDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAED 530
Query: 271 --HTWPPHIQILGKDILKFHGIYWPAFLIAAGLE----PPKSFLVHSHWTV---DGVKMS 321
+P + G DIL F W A ++ G+E P S+ V+ H + G KMS
Sbjct: 531 FKKFYPTTVLETGHDILFF----WVARMVMMGIEFTGTVPFSY-VYLHGLIRDSQGRKMS 585
Query: 322 KSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGN 377
K++GNV+DP+ + +F + LR F L GT D N S + + N N L N
Sbjct: 586 KTLGNVIDPLDTIKEFGTDALR-FTLALGTAGQDLNLSTERLTS--NKAFTNKLWN 638
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 48.4 bits (116), Expect = 5e-06
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 254 WLDALMNYLTVSGYP----DF-HTWPPHIQILGKDILKFHGIYWPAFLIAAGLE-----P 303
W + + + G+P D +P + + G DI+ F W A +I GL+ P
Sbjct: 271 WFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFF----WVARMIMRGLKLTGKLP 326
Query: 304 PKSFLVHSHWTV---DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNY 358
K +H V DG KMSKS+GNV+DP+ + + + LR+ L T D N
Sbjct: 327 FKEVYLHG--LVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 47.3 bits (113), Expect = 2e-05
Identities = 44/229 (19%), Positives = 78/229 (34%), Gaps = 55/229 (24%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
++ Y + + H+GH+ + D R+ ++ + + G D GL +NAAIK
Sbjct: 37 YVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNV--LHPMGWDAFGLPAENAAIKI 94
Query: 67 KLE----TIDFCNKISDQYKLM---------FKTYDIEYTHYVRTTSEHHFRTVNTVW-- 111
+ T + Q K + F T D EY +++ W
Sbjct: 95 GTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQ-------------WQF 141
Query: 112 TKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVS 171
KL ++ Y + +C P + L Q+
Sbjct: 142 LKLYEKGLAYRKEAPVNWC-------------PVDGT----VLANEQVIDGGCWRCGE-- 182
Query: 172 IESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNM 220
PVE E + FK+++Y +++ LDK + P+ RN
Sbjct: 183 -----PVEIKELTQWFFKITDYADELLDDLDK-LATLWPETVKGMQRNW 225
Score = 32.3 bits (74), Expect = 0.78
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 281 GKDILKFH---GIYWPAFLIAAGL----EPPKSFLVHSHWTV-DGVKMSKSVGNVVDPMS 332
G + H ++ L GL EP K + +G KMSKS GNVVDP
Sbjct: 533 GIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEE 592
Query: 333 KLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNI 366
+ + + +R +++ D +SE+ +
Sbjct: 593 AVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA 626
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 46.1 bits (110), Expect = 4e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 309 VHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH--SDSNYSET---K 362
+H+ + +DG KMSKS+GN + L + LR FLL ++H S ++SE +
Sbjct: 257 MHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLL---SSHYRSPLDFSEELLEE 313
Query: 363 AKNILNAELANTLGNLLNR 381
AK L L N L L +
Sbjct: 314 AKKALER-LYNALRRLRDL 331
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 43.6 bits (104), Expect = 2e-04
Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 41/200 (20%)
Query: 309 VHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH--SDSNYSETKAKN 365
+H+ + TV+G KMSKS+GN L + LR+FLL + H S N+SE +
Sbjct: 255 MHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLL---SAHYRSPLNFSE---EA 308
Query: 366 ILNAE-----LANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQT 420
+ A+ L N L + R E M
Sbjct: 309 LEQAKKALERLYNALAE-TALGEDDEALLAELEEFKER-FIEAM---------------- 350
Query: 421 LHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRK-ENKIEELNLVLGVTFEV 479
+D +FN + + + + N+ ++T + L VLG+ +
Sbjct: 351 --DD------DFNTPEALAVLFELAREINRALETKDKEAAAALAALLRALADVLGLEQDE 402
Query: 480 LRICGIGLQPIVPKLADKLL 499
+ ++ + L+
Sbjct: 403 EALFEAAADELLDAEIEALI 422
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 43.9 bits (105), Expect = 2e-04
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 75/173 (43%)
Query: 311 SH-WTVD--GVKMSKSVGNVVDP---MSKL-----------SDFTSCGLRYFLLREGTNH 353
+H +TVD G KMSKS+GNV+DP + K +D++
Sbjct: 581 THGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYS--------------- 625
Query: 354 SDSNYSETKAKNIL--NAE----LANT----LGNLLNRCLSKSINPDNVNPLVNRECYEV 403
D S IL AE + NT LGNL ++ +P + YE
Sbjct: 626 GDVRIS----DEILKQVAEAYRRIRNTLRFLLGNL-----------NDFDPAKDAVPYEE 670
Query: 404 MFTKEPVLTEL----IENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFI 452
+ EL + L E++ Y ++F+K V + F
Sbjct: 671 L-------LELDRWALHRLAELQEEILEAYENYDFHK-------VYQKLHNFC 709
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 42.9 bits (102), Expect = 4e-04
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL--REGTNHSDSNYSETKAKN-------I 366
DG KMSKS GNVV P L + + +RY+ R G SD+ + E + K +
Sbjct: 530 DGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLG---SDTPFDEKQVKIGRRLLTKL 586
Query: 367 LNA 369
NA
Sbjct: 587 WNA 589
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 42.1 bits (99), Expect = 7e-04
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 248 TQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLI---AAGLEPP 304
T T+ VW D+ ++ V G + ++P + + G D + G + + L G P
Sbjct: 538 TDTMDVWFDSGSSWAGVLGSREGLSYPADLYLEGSD--QHRGWFQSSLLTSVATKGKAPY 595
Query: 305 KSFLVHSHWTVD--GVKMSKSVGNVVDP 330
KS L H + +D G KMSKS+GNVVDP
Sbjct: 596 KSVLTHG-FVLDEKGFKMSKSLGNVVDP 622
Score = 30.9 bits (70), Expect = 2.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 14 YVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQ 60
Y N HIGH +L D +R+ L ++ + G D HGL I+
Sbjct: 42 YANGDLHIGHALNKILKDFINRYQLLQGKKVHYV--PGWDCHGLPIE 86
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 8 ITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK-- 65
T N HIGHL T + D + + + ++ I D+ G I + A K
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCI--ALIDDAGGLIGDPANKKG 58
Query: 66 --HKLETIDFCNKISDQYKLMF-------KTYDIEYTHYVRTTSEHHFRTVNTVW 111
K + +I + + MF Y+ E ++ S+ +
Sbjct: 59 ENAKAFVERWIERIKEDVEYMFLQAADFLLLYETECDIHL-GGSDQLGHIELGLE 112
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 40.9 bits (97), Expect = 0.001
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETK---AKNILN 368
G KMSKS GNV+DP+ + + + LR+ L + D + E + +N N
Sbjct: 517 QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFAN 572
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 39.7 bits (94), Expect = 0.004
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 302 EPP-KSFLVHSHWTV---DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
PP K+ LVH H V DG KMSKS+GN VDP + + LR++LL
Sbjct: 573 RPPYKNVLVHGH--VLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLL 620
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 39.1 bits (91), Expect = 0.006
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 245 DDDTQTIYVWLDALMNYLTVSGYP----DFHT-WPPHIQILGKDILKFHGIYWPAFLIAA 299
D + W + + L+V G+P D +P + G DIL F W A ++
Sbjct: 574 SQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFF----WVARMVMM 629
Query: 300 GLE-----PPKSFLVH-----SHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGL 342
G++ P + +H +H G KMSKS+GNV+DP+ ++ + GL
Sbjct: 630 GMQLGGDVPFRKVYLHPMIRDAH----GRKMSKSLGNVIDPLEVINGISLEGL 678
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 37.2 bits (87), Expect = 0.009
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 309 VHS-HWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
+H+ H T+DG KMSKS+GN + L + LR LL
Sbjct: 163 LHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALL 202
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 37.3 bits (87), Expect = 0.016
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 298 AAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSN 357
A + K +L + H ++G KMSKS+GN + L + LRYFLL +
Sbjct: 232 AFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSP-LD 290
Query: 358 YSET---KAKN 365
+SE +AKN
Sbjct: 291 FSEELLEQAKN 301
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 37.0 bits (86), Expect = 0.023
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 300 GLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDS--N 357
G + K ++ + +D KMSKS+GN L ++ LRYFLL + H S +
Sbjct: 246 GKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLL---SVHYRSPLD 302
Query: 358 YSET---KAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVN 397
+SE AKN L L L L N P
Sbjct: 303 FSEELLEAAKNALE-RLYKALRVLDTSLAYSGNQSLNKFPDEK 344
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 36.9 bits (85), Expect = 0.026
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 20/194 (10%)
Query: 169 YVSIE--SNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFY--NQLRN-MCSE 223
YV IE + +E VE+ F + N W+ D ++ + +Q+ C +
Sbjct: 376 YVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD 435
Query: 224 IENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPD----FHT-WPPHIQ 278
++ P+A G D + W + + + G+P+ T +P +
Sbjct: 436 GHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVM 495
Query: 279 ILGKDILKFHGIYWPAFLIAAGLE-----PPKSFLVHSHWTVD-GVKMSKSVGNVVDPMS 332
G DI+ F W A ++ GL P ++ +H + G KMSK+ GNV+DP+
Sbjct: 496 ETGHDIIFF----WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLV 551
Query: 333 KLSDFTSCGLRYFL 346
+ + LR+ L
Sbjct: 552 ITEQYGADALRFTL 565
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 37.0 bits (86), Expect = 0.032
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 269 DFHTWPP-HIQILGKDILKFH---GIYWPAFLIAAGLEP-PKSFLVHSHWTVDGVKMSKS 323
+F W P +++ GKD+++ H IY + A E P+ F + H ++ KMSKS
Sbjct: 665 EFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAE--EHWPRGFRCNGHLMLNSEKMSKS 722
Query: 324 VGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYS-ETKAKNIL 367
GN + + +F++ R+ L G D+N+ ET IL
Sbjct: 723 TGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAIL 767
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 36.7 bits (85), Expect = 0.038
Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 14 YVNASPHIGHL--YTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLE-- 69
Y + + H+GH+ YT D R+ ++ + + G D GL +NAAIK +
Sbjct: 39 YPSGALHMGHVRNYTI--TDVLSRYYRMKGYNV--LHPIGWDAFGLPAENAAIKRGIHPA 94
Query: 70 --TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKG 127
T + + Q + + +YD + + T +++ ++ +L ++ Y +
Sbjct: 95 KWTYENIANMKKQLQALGFSYD--WDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADV 152
Query: 128 WYCVSEESFLLEHQIRPDEKNEEESFLLE 156
+C ++ + L Q+ D ++ +E
Sbjct: 153 NWCPNDGTVLANEQVDSDGRSWRGDTPVE 181
Score = 34.0 bits (78), Expect = 0.21
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 279 ILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFT 338
+LG + K+ V KMSKS GN +DP + +
Sbjct: 567 VLGFYYPPNGKVPADVLTERDEKGKDKA--GGELVYVGYEKMSKSKGNGIDPQEIVESYG 624
Query: 339 SCGLRYFLL 347
+ LR F++
Sbjct: 625 ADALRLFIM 633
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 35.8 bits (84), Expect = 0.055
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 318 VKMSKSVGNVVDP 330
VKMSKS GNVVDP
Sbjct: 569 VKMSKSKGNVVDP 581
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 36.1 bits (84), Expect = 0.058
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 303 PPKSFLVHSHWTVD--GVKMSKSVGNVVDP 330
P K+ L H +T+D G KMSKS+GN V P
Sbjct: 613 PYKAVLTHG-FTLDEKGEKMSKSLGNTVSP 641
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 35.0 bits (81), Expect = 0.10
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Query: 268 PDFHTW-PPHIQILGKDILKFHGIYWPAFLIAAGLE-----PPKSFLVH-----SHWTVD 316
D + P + G DIL F W A ++ L P K+ +H S
Sbjct: 531 DDLQRFFPTSLLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQ---- 582
Query: 317 GVKMSKSVGNVVDPM 331
G KMSKS GNV+DP+
Sbjct: 583 GEKMSKSKGNVIDPL 597
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 35.2 bits (81), Expect = 0.10
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 269 DFHTW-PPHIQILGKDI----LKFH-----GIYWPAFLIAAGLEPPKSFLVHSHWTVDGV 318
+F W P +I GKD+ L F+ I+ F P+ +V+ + ++G
Sbjct: 567 EFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFW-------PRGIVVNGYVMLEGK 619
Query: 319 KMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368
KMSKS GNV+ + F + R ++ D+++ E++ + +
Sbjct: 620 KMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTIL 669
Score = 29.8 bits (67), Expect = 4.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRI 44
F+T Y+N H GH T + + + RF ++ +
Sbjct: 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNV 65
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 33.0 bits (75), Expect = 0.39
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 306 SFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH-SDSNYSE 360
S+ +H+ + TVD KMSKS+GN + + LR FLL GT++ S NYS+
Sbjct: 309 SYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLL--GTHYRSPINYSD 363
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 32.4 bits (73), Expect = 0.60
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 315 VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL----REGTNHSDSNYSETK-AKNILNA 369
VDG KMSKS+GN L + +R+F+L R N+SD++ + K A L
Sbjct: 504 VDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYT 563
Query: 370 ELANT 374
L NT
Sbjct: 564 TLKNT 568
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 32.2 bits (74), Expect = 0.63
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 10/26 (38%)
Query: 316 DGVKMSKSVGNVV----------DPM 331
DG KMSKS GN+V DP
Sbjct: 258 DGEKMSKSRGNLVFVSRLRAAGVDPA 283
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 32.4 bits (74), Expect = 0.74
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 316 DGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
DG KMSKS+ N DP + + + LR +L+
Sbjct: 611 DGKKMSKSLKNYPDPNEVIDKYGADALRLYLI 642
Score = 29.7 bits (67), Expect = 4.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 195 NDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP----DDDTQT 250
N +W+ D VK K+F+N L N D +VSR + WG P+P DD +
Sbjct: 442 NKQTYWV---PDYVKEKRFHNWLEN-----ARDWAVSRSR---FWGTPLPIWISDDGEEV 490
Query: 251 I 251
+
Sbjct: 491 V 491
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 31.2 bits (71), Expect = 1.4
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 316 DGVKMSKSVGNVV 328
DG KMSKS+GN+V
Sbjct: 285 DGEKMSKSLGNLV 297
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.2 bits (71), Expect = 1.5
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 307 FLVHS-HWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDS--NYSET 361
FL HS H + G+KMSKS+ N + LS +T+ +R L + D NYS+
Sbjct: 303 FL-HSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFL---LHKWDKPMNYSDE 356
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 30.7 bits (70), Expect = 1.7
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 190 LSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDIS 229
L N + + + ++ + KFYN L + +++ +
Sbjct: 247 LQKLENAYDKYKELSSNLEEGLKFYNDLLEILEKLQKKVK 286
>gnl|CDD|222042 pfam13313, DUF4082, Domain of unknown function (DUF4082). This
family appears to be a parallel beta-helix repeated
region that sits between successive Cadherin domains,
pfam00028.
Length = 149
Score = 29.1 bits (66), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 1 RFKSTC--FITTPIFYV---NASPHIGHLYTA---LLADAT 33
+F ++ IT FY N H G L++A LLA T
Sbjct: 24 KFTASVAGQITGVRFYKGAGNTGTHTGSLWSADGTLLATVT 64
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 30.3 bits (68), Expect = 3.0
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 76/216 (35%)
Query: 195 NDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP---DDDTQTI 251
N+ +W+ + +K KKF+N +++ D +SR + +WG P+P D+ +T+
Sbjct: 546 NETTYWIPAH---IKEKKFHNWIKD-----AKDWCISRNR---YWGTPIPIWADEKMETV 594
Query: 252 YVWLDALMNYLTVSGYP---DFHT-WPPHIQI---LGKDILK------------------ 286
+ ++++ + +SG D H + HI+I GK K
Sbjct: 595 -ICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMP 653
Query: 287 --------------FHGIYWPAFLIAAGLEPPK----SFLVHSHW--------------- 313
FH I+ PA IA GL+ + + LV S
Sbjct: 654 YAKVHYPFSTEKEDFHKIF-PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGL 712
Query: 314 --TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
DG KMSK + N DP+ L + + LR +L+
Sbjct: 713 VLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLI 748
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 29.5 bits (67), Expect = 4.3
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 281 GKDILKFHGIYWPAFLIAA---GLEPPKSFLVHSHWTVDGV-KMSKSVGNVVDPMSKLSD 336
GKD G Y + IA G EPP+ F + + G KMS S GNV+ D
Sbjct: 238 GKDHAAPGGSYDTSSRIAREILGGEPPEPF-PYELILLKGGGKMSSSKGNVITI----ED 292
Query: 337 FTSCG----LRYFLLR 348
+ LR+ + R
Sbjct: 293 WLEYAPPESLRFLMFR 308
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 29.0 bits (66), Expect = 6.0
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 4/17 (23%)
Query: 18 SP----HIGHLYTALLA 30
SP H G L AL +
Sbjct: 13 SPSGPLHFGSLVAALGS 29
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 29.0 bits (65), Expect = 7.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 319 KMSKSVGNVVDPMSKLSDFTSCGLRYF 345
KMSKS GNVV+P +S++ + LR +
Sbjct: 723 KMSKSRGNVVNPDDVVSEYGADSLRLY 749
>gnl|CDD|148632 pfam07136, DUF1385, Protein of unknown function (DUF1385). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 300 residues
in length. Some family members are predicted to be
metal-dependent.
Length = 235
Score = 28.7 bits (65), Expect = 7.6
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 427 LHY---SEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRIC 483
LH + F + SII+ I W LR ++I L +V G+++E+++
Sbjct: 136 LHPRCGTSFLLIVMIVSIIVFS-----LIGWDPLW-LRILSRILLLPVVAGLSYEIIKFA 189
Query: 484 GIGLQPIV-----PKLADKLLT 500
G P+V P L + LT
Sbjct: 190 GKSQNPLVKILSAPGLWLQKLT 211
>gnl|CDD|217478 pfam03294, Pox_Rap94, RNA polymerase-associated transcription
specificity factor, Rap94.
Length = 796
Score = 28.5 bits (64), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 186 YMFKLSNYINDVAHWLDKNEDVVK 209
Y F LS+Y+N+V W+D+N ++
Sbjct: 765 YNF-LSSYVNNVQSWIDENITRIR 787
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,936,507
Number of extensions: 2634065
Number of successful extensions: 2444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2373
Number of HSP's successfully gapped: 88
Length of query: 528
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 427
Effective length of database: 6,457,848
Effective search space: 2757501096
Effective search space used: 2757501096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)