RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4049
(528 letters)
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 597 bits (1542), Expect = 0.0
Identities = 184/526 (34%), Positives = 273/526 (51%), Gaps = 41/526 (7%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ F TTPI+YVNASPHIGH+Y+ L+ D R+ ++ + + TGTDEHG K+ A
Sbjct: 25 QKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEV--FVMTGTDEHGQKVAEA 82
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A K + +DF +S ++K F+ + + +++RTT+ H + V +W KL + IY
Sbjct: 83 AAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYL 142
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
KY+GWY VS+ESFL + D + VS+ES V WVE
Sbjct: 143 GKYEGWYSVSDESFLTAQNVADGV---------------DRDGKPCKVSLESGHVVTWVE 187
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKA-RVHWGI 241
E+NYMF+LS + + + + + + P+ ++ + D+S+SR + ++W I
Sbjct: 188 EENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSI 247
Query: 242 PVPDDDTQTIYVWLDALMNYLTVSGYPDFHT--------------WPPHIQILGKDILKF 287
PVP D+ IYVWLDAL NY T + WP + ++GKDILKF
Sbjct: 248 PVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKF 307
Query: 288 HGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLL 347
H IYWPAFL++A L P+ + H WT D K+SKS+GN DP+ K +F L+YFL+
Sbjct: 308 HAIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLM 367
Query: 348 REGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTK 407
RE D +YS+ LN ELA+TLGNL++RC++ IN + + P
Sbjct: 368 RESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEY-------- 419
Query: 408 EPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIE 467
LI + L V +Y + + +I VL N ++ PW L K +
Sbjct: 420 SESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDT-A 478
Query: 468 ELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDN 513
L VL VT E LRIC + LQP++P+ A +++ LG+P R+
Sbjct: 479 RLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGME 524
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 547 bits (1411), Expect = 0.0
Identities = 170/519 (32%), Positives = 261/519 (50%), Gaps = 44/519 (8%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ ++TTPI+YVNA PH+GH YT ++AD R+ +L R TGTDEHG + A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRT--FFLTGTDEHGETVYRA 59
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A + F +++S ++K + I Y ++RTT E H + V V K+ + IY
Sbjct: 60 AQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
+Y+G YCVS E F E ++ + +PVE +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE------------------------GLCPIHGRPVERRK 155
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242
E NY F++ Y + ++ +N D+++P+ + N++ M +E D+S+SRPK+RV WGIP
Sbjct: 156 EGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIP 215
Query: 243 VPDDDTQTIYVWLDALMNYLTVSGYPD---FHT-WPPHIQILGKDILKFHGIYWPAFLIA 298
+P D+ +VW DAL+NY++ YP+ + T WP ++GKDILK H ++WP L A
Sbjct: 216 LPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKA 275
Query: 299 AGLEPPKSFLVHSHWT-VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSN 357
AG+ + V DG KMSK++GNVVDP + L + LRY+LLRE D+
Sbjct: 276 AGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTP 335
Query: 358 YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIEN 417
SE + A+LA+ LGNL+ R + ++ R + EPV E +
Sbjct: 336 VSEEALRTRYEADLADDLGNLVQRTRA----------MLFRFAEGRI--PEPVAGEELAE 383
Query: 418 CQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTF 477
L ++ E F+ ++ + + N++I+ KPW L K+ EE VL
Sbjct: 384 GTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP-EEARAVLYRVV 442
Query: 478 EVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRF 516
E LRI I L P +P +L LG+ RL + R+
Sbjct: 443 EGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERW 481
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 544 bits (1405), Expect = 0.0
Identities = 170/511 (33%), Positives = 266/511 (52%), Gaps = 37/511 (7%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
++TTPI+YVN PH+GH YT + AD R+ +L + + TGTDEHGLKIQ
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDV--FFLTGTDEHGLKIQKK 61
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A + + + ++ ++++K +++ IEYT ++RTT +H + V V+ + +R IY
Sbjct: 62 AEELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYL 121
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
+Y+GWYCV E F E ++ D + E+++
Sbjct: 122 GEYEGWYCVGCEEFKSEAELAEDHT-----------------------CPIHQKKCEYIK 158
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242
E +Y F+LS Y + + +KN + ++P N++ + + D+SV+RP++RV WGIP
Sbjct: 159 EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIP 218
Query: 243 VPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLE 302
VP D TIYVW DAL NY++ WP + ++GKDIL+FH +YWPAFL++ G E
Sbjct: 219 VPFDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYE 278
Query: 303 PPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETK 362
PK H WTV+G KMSK++GNVVDP + ++ +RYFLLRE D ++S+
Sbjct: 279 LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKA 338
Query: 363 AKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLH 422
N +N ELAN +GNL +R ++ + ++ + E + Q
Sbjct: 339 ILNRINGELANEIGNLYSRVVN----------MAHKFLGGEV--SGARDEEYAKIAQESI 386
Query: 423 EDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRI 482
++ + + + NFYK ++ I+ NK++D +PW L KE K EEL VL + L +
Sbjct: 387 KNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFV 446
Query: 483 CGIGLQPIVPKLADKLLTRLGIPTNERLWDN 513
L PI P + L LG +
Sbjct: 447 LTHLLYPITPNKMKEALQMLGEKEFLKELKP 477
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 540 bits (1394), Expect = 0.0
Identities = 176/517 (34%), Positives = 261/517 (50%), Gaps = 41/517 (7%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+ITT I Y N PHIGH Y + DA RF +L + TGTD HG K+ A K
Sbjct: 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDV--RYLTGTDVHGQKMAETAAKE 72
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ + + SD ++ + + +I + ++RT+ H+ +W ++ IY + YK
Sbjct: 73 GIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYK 132
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
GWY + +E F E++ E+ +G ++ E+ PV W EEQ Y
Sbjct: 133 GWYSIRDERFFTENET-------------------TEQPDGTRIATETGAPVTWTEEQTY 173
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F+LS Y + + +++ + + P N++ + S D+S+SR WG+PVPD
Sbjct: 174 FFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRT--TFDWGVPVPDH 231
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHT------WPPHIQILGKDILKFHGIYWPAFLIAAG 300
+YVW+DAL NYLT G+PD + WP + ++GKDI++FH +YWPAFL++AG
Sbjct: 232 PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG 291
Query: 301 LEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSE 360
L PK H G KMSKS+GNVVDP++ + F +RYFLLRE D +Y+E
Sbjct: 292 LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNE 351
Query: 361 TKAKNILNAELANTLGNLLNRCLSKSI-NPDNVNPLVNRECYEVMFTKEPVLTELIENCQ 419
+NA+LAN LGNL R LS N P T L+
Sbjct: 352 DAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPG--------EFTDEDTALLAAAD 403
Query: 420 TLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKEN---KIEELNLVLGVT 476
L E V+ H+ + +++I VL AN++ +PW LRK + + VL T
Sbjct: 404 ALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTT 463
Query: 477 FEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDN 513
EV+RI + LQP++P+ KLL LG PT+ER +
Sbjct: 464 LEVVRIASLLLQPVMPESTAKLLDLLGQPTDERDFSA 500
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 535 bits (1381), Expect = 0.0
Identities = 169/522 (32%), Positives = 253/522 (48%), Gaps = 43/522 (8%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ +ITT I Y N PHIGH Y + DA RF +L + TGTDEHG+K+ +
Sbjct: 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDV--YFLTGTDEHGIKMLQS 81
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A K + D ++ + ++ M + + Y+RT+ E H++ +W + IY
Sbjct: 82 ARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYK 141
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
Y GWY V +E++ E + PVEWVE
Sbjct: 142 GGYAGWYSVRDEAYYGEEETEVRADG--------------------VRYGPQGTPVEWVE 181
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242
E++Y F+LS Y + + + N + P + N++ + D+S+SR WGIP
Sbjct: 182 EESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRT--TFDWGIP 239
Query: 243 VPDDDTQTIYVWLDALMNYLTVSGYPD-----FHTWPPHIQILGKDILKFHGIYWPAFLI 297
VP D+ +YVW+DAL NY+T GYPD + WP + I+GKDI +FH +YWPAFL+
Sbjct: 240 VPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLM 299
Query: 298 AAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSN 357
+A L PK H G KMSKSVGNV+DP + + LRYFL+RE D +
Sbjct: 300 SAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGS 359
Query: 358 YSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVL---TEL 414
YS N NA+LAN LGNL R LS ++ + C + +
Sbjct: 360 YSHEAIVNRTNADLANDLGNLAQRSLS----------MIAKNCEGKVPQPGAFSEADKAI 409
Query: 415 IENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLG 474
++ E + + + + +I V+ AN++ +PW LRK + + VL
Sbjct: 410 LDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDP-ARMGTVLY 468
Query: 475 VTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRF 516
VT EVLR GI +QP +P+ A+KLL L +P ++R + ++
Sbjct: 469 VTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADVLA 510
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 502 bits (1293), Expect = e-174
Identities = 187/527 (35%), Positives = 271/527 (51%), Gaps = 42/527 (7%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ F+T+PI+YVNA+PHIGH+Y+ L+ D R+ ++ R+ TGTDEHG K+ A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERV--FALTGTDEHGQKVAEA 65
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A + ++ DF ++ ++K F+ D +++RTT+E H V +WTKL+Q+ IY
Sbjct: 66 AKQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
+Y+GWY +S+ESFL I D+ VS+ES V WV
Sbjct: 126 GRYEGWYSISDESFLTPQNITDGV---------------DKDGNPCKVSLESGHVVTWVS 170
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVH-WGI 241
E+NYMF+LS + + W N + P+ ++ + D+SVSR +A +H W I
Sbjct: 171 EENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAI 230
Query: 242 PVPDDDTQTIYVWLDALMNYLTVSGYPD---------------FHTWPPHIQILGKDILK 286
PVP + +YVWLDAL NYLT S +P + ++GKDILK
Sbjct: 231 PVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK 290
Query: 287 FHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFL 346
FH IYWPAFL++AGL PK + H WT D K+SKS+GNV DP+ K +F L+YFL
Sbjct: 291 FHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFL 350
Query: 347 LREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFT 406
LRE D +YS+ LN ELA+TLGNL+ RC S IN + P
Sbjct: 351 LRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAY------- 403
Query: 407 KEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKI 466
LI+ + L +Y + K + ++ VL N ++ PW L K +
Sbjct: 404 -TEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTDP- 461
Query: 467 EELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDN 513
E L VL +T E +R+ + L PI+P+ + + LG+P R
Sbjct: 462 ERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIE 508
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 297 bits (761), Expect = 1e-92
Identities = 123/552 (22%), Positives = 230/552 (41%), Gaps = 74/552 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALL-ADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK 65
+T+ + Y N H GHL A L AD R+++L + I GTDEHG I A+K
Sbjct: 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFI--CGTDEHGTPISFRALK 62
Query: 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY 125
+ ++ +Q K+ F+ I + + RT H++ + K + +
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVT 122
Query: 126 KGWYCVSEESFLLEHQIR---PDEKNEEESFLLEHQIRPD--EKNEGQYVSIE------- 173
K YC ++ FL + + P E++ + D E
Sbjct: 123 KQAYCEHDKMFLPDRFVIGTCPYCGAEDQ--------KGDQCEVCGRPLTPEILINPRCA 174
Query: 174 -SNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSR 232
+P+ + + +Y K+ ++ + W++K N + + E + +++R
Sbjct: 175 ICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITR 231
Query: 233 PKARVHWGIPVPDDDT----QTIYVWLDALMNYLTVSGY--------PDFHTW------- 273
++WGIPVP D+ + +YVW +A + Y++++ ++ +
Sbjct: 232 D---LNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQ 288
Query: 274 PPHIQILGKDILKFHGIYWPAFLIAAGLEP----------PKSFLVHSHWTVDGVKMSKS 323
I +GKD + FH I+WPAFL+A G P + + T++G K S S
Sbjct: 289 TRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTS 348
Query: 324 VGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCL 383
+ L F + LRY+L DS++S + K +N EL N LGN ++R L
Sbjct: 349 RNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRAL 408
Query: 384 SKSINPDNVNPLVNRECYEV---MFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDS 440
+ VNR V + + E +E + ++V + F +
Sbjct: 409 T----------FVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR 458
Query: 441 IILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLT 500
++ + N++ D +PW KE+K + ++ ++++ GI L+P +P ++K+
Sbjct: 459 VMSLASFGNRYFDHKQPWKTAKEDK-VRTGTTVNISLQIVKALGILLEPFLPDASEKIWH 517
Query: 501 RLGIPTNERLWD 512
L + +R W+
Sbjct: 518 LLNLDEVKR-WE 528
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 241 bits (618), Expect = 3e-73
Identities = 113/550 (20%), Positives = 210/550 (38%), Gaps = 84/550 (15%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T Y N S H+GH+ + AD R+ ++ ++ I D HG I A +
Sbjct: 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI--CADDAHGTPIMLKAQQL 78
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 79 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 138
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIR------PDEKNEGQY----------- 169
Y + FL PD R P K+ QY
Sbjct: 139 QLYDPEKGMFL------PD--------------RFVKGTCPKCKSPDQYGDNCEVCGATY 178
Query: 170 --------VSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMC 221
S+ S + +++ F L ++ + W ++ N+++
Sbjct: 179 SPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL---QEQVANKMQEWF 235
Query: 222 SEIENDISVSRPKARVHW-GIPVPDDDTQTIYVWLDALMNYLTVS--------GYPDFHT 272
+SR + G +P+ + YVWLDA + + F
Sbjct: 236 ESGLQQWDISRD---APYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDE 292
Query: 273 W---PPH---IQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGN 326
+ +GKDI+ F ++WPA L + P + VH + TV+G KMSKS G
Sbjct: 293 YWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGT 352
Query: 327 VVDPMSKLSDFTSCGLRYFLL-REGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSK 385
+ + L+ F + LRY+ + + D + + +NA++ N + NL +R
Sbjct: 353 FIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAG- 411
Query: 386 SINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVL 445
+N+ V+ E +L + E + + F K V I+ +
Sbjct: 412 ---------FINKRFDGVL-ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA 461
Query: 446 HLANKFIDTTKPWTLRKEN-KIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLGI 504
LAN+++D PW + K+ + +L + + + R+ L+P++PKL ++ L
Sbjct: 462 DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521
Query: 505 PTNERLWDNM 514
WD +
Sbjct: 522 ELT---WDGI 528
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 2e-13
Identities = 77/513 (15%), Positives = 150/513 (29%), Gaps = 167/513 (32%)
Query: 131 VSEESFLLEHQIR---------PDEK----NEEES-------FL--LEHQIRPDEKNEGQ 168
V SF + Q++ P E +E + FL + + P + GQ
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV--GQ 79
Query: 169 YVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKK------FYNQLRNMCS 222
+ + + E+ E Y+ N I+ +A L + D K +
Sbjct: 80 FDQVLNLCLTEF--ENCYLE--GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 223 EIENDI------SVSRPKARVHW---GIPVPDDDTQ-TIYVWLDALMN-YLTVSGYPDF- 270
+ +V A++ G Q + + L + Y T Y
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGG--------QGNTDDYFEELRDLYQT---YHVLV 184
Query: 271 ----HTWPPHIQILGKDILKFHGIY--------WPAFLIAAGLEPPKSFLVHS------- 311
+ L + L ++ W L P K +L+
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLSIPISCPLI 241
Query: 312 ------HWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREG------TNHSDSNYS 359
H+ V + + G + + T +G +DS
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHS-------QGLVTAVAIAETDS--W 289
Query: 360 ETKAKNILNA-ELANTLGNLLNRCLSKSINPDNVNPLVNRECYEV-------MF-----T 406
E+ ++ A + +G RC ++ ++ P + + E M T
Sbjct: 290 ESFFVSVRKAITVLFFIG---VRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 407 KEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSII----------LVLHL----ANKFI 452
+E V + + L ++ S N G +++ L L L A +
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 453 DTTK-PWTLRKENKIEELNLVLGVTFEVLRI-----CGIGLQPIVPKLADKLLTR----- 501
D ++ P++ RK L F L + + L P + L+
Sbjct: 403 DQSRIPFSERK--------LKFSNRF--LPVASPFHSHL-LVPASDLINKDLVKNNVSFN 451
Query: 502 ---LGIP---TNERLWDNMRFSDNDMFNDLINC 528
+ IP T + ++R + +++C
Sbjct: 452 AKDIQIPVYDTFD--GSDLRVLSGSISERIVDC 482
Score = 35.0 bits (80), Expect = 0.065
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 27/53 (50%)
Query: 22 GH-L--YTALLA--------DATHRFVKLVNPRISSILTTGTDEHGLKIQNAA 63
GH L Y AL + V++V R G+ +Q A
Sbjct: 1761 GHSLGEYAALASLADVMSIESL----VEVVFYR------------GMTMQVAV 1797
Score = 29.6 bits (66), Expect = 3.1
Identities = 49/275 (17%), Positives = 84/275 (30%), Gaps = 76/275 (27%)
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242
+ Y F + + + + L + K K+ M E D + K I
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK------IF 1707
Query: 243 VPDDDTQTIYVW------LD-------ALMNYLTVSGYPDFHTW------PPHIQILGKD 283
++ T Y + L AL + F P G
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALT---LME-KAAFEDLKSKGLIPADATFAG-- 1761
Query: 284 ILKFH--GIYWPAFLIA-AGLEPPKSF--LVH-----SHWTVDGVKMSKSVGNV--VDPM 331
H G Y A L + A + +S +V V ++ +S + ++P
Sbjct: 1762 ----HSLGEY-AA-LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 332 SKLSDFTSCGLRYFLLREGTNHSDS----NYSETKAKNILNA------ELA--NTLGNLL 379
+ F+ L+Y + R G NY N+ N +L +T+ N+L
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNY------NVENQQYVAAGDLRALDTVTNVL 1869
Query: 380 NRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTEL 414
N + I D + L + + E V L
Sbjct: 1870 NFIKLQKI--DII-EL------QKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 3e-13
Identities = 84/522 (16%), Positives = 153/522 (29%), Gaps = 157/522 (30%)
Query: 48 LTTGTDEHGLKIQNAAIKHKLETI--DF-CNKISDQYKLMFKTYDIEYTHYVRTTSEHHF 104
+ T EH + ++ + + +F C + D K + +I+ H + +
Sbjct: 7 MDFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAVS- 62
Query: 105 RTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEK 164
T+ WT L +++ + + F+ E +R + K FL+ I+
Sbjct: 63 GTLRLFWTLLSKQEEMV------------QKFV-EEVLRINYK-----FLMS-PIK---- 99
Query: 165 NEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEI 224
E QP + + Y+ + ND + N V + + Y +LR E+
Sbjct: 100 -------TEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYN--VSRLQP-YLKLRQALLEL 147
Query: 225 ENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDI 284
RP + + G GK
Sbjct: 148 -------RP-------------------------AKNVLIDGVLGS----------GKTW 165
Query: 285 LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRY 344
+ A + + W ++ N P + L L Y
Sbjct: 166 V--------ALDVCLSYKVQCKMDFKIFWL--------NLKNCNSPETVLEMLQK--LLY 207
Query: 345 FLLREGTNHSDSNYSETKAKNILNAELANTLGN-LLNRCLSKSINPDNV-NPLV----NR 398
+ T+ SD + + + + AEL L + CL + NV N N
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAWNAFNL 264
Query: 399 ECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFN-------FYKGVDSI---------- 441
C ++ T+ +T+ + T H + H K +D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 442 ILVLHLA------NKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLA 495
L+ + T W K ++L ++ + VL P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLE----------PAEY 371
Query: 496 DKLLTRLG-------IPTN--ERLWDNMRFSD-NDMFNDLIN 527
K+ RL IPT +W ++ SD + N L
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 66.1 bits (161), Expect = 2e-11
Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 28/271 (10%)
Query: 237 VHWGIPVPDDDTQTIYVWLDALMNYLTVSG-YPDFHTWPPHIQIL-GKDILKFHGIYWPA 294
+ + + + + + +F W P GKD++ H ++
Sbjct: 564 FDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIF 623
Query: 295 F--LIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTN 352
I PK V+ T++G KMSKS GNV++ + + + + +R +++ +
Sbjct: 624 NHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEH 683
Query: 353 HSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLT 412
SD ++ + + L+++ + + ++R
Sbjct: 684 DSDFDWRRKEVGKLRKQ--IERFYELISQFAEYEVKGNVELKDIDR-------------- 727
Query: 413 ELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLV 472
++ ++ EF + A I W LR+ ++
Sbjct: 728 WMLHRLNKAIKETTNALEEFRTRT-------AVQWAFYSIMNDLRWYLRRTEGRDDEA-K 779
Query: 473 LGVTFEVLRICGIGLQPIVPKLADKLLTRLG 503
V + + + P P + ++L +LG
Sbjct: 780 RYVLRTLADVWVRLMAPFTPHICEELWEKLG 810
Score = 41.9 bits (98), Expect = 5e-04
Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 38/175 (21%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKL----VNPRISSILTTGTDEHGLKIQNA 62
+IT Y++ H+GH T + D RF ++ V + G I
Sbjct: 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPM------AWHITGSPIVGI 90
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYD-----IEYTHY---------------------V 96
A + K D YK+ + I Y
Sbjct: 91 AERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREF 150
Query: 97 RTTSEHHF--RTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE 149
TTS + + + KLK++ I ++ + + L +H + E
Sbjct: 151 YTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP 205
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 58.8 bits (142), Expect = 2e-09
Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 30/227 (13%)
Query: 281 GKDILKFHGIYWPAFLIAAGL----EPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
GKD++ H + + PK V+ T++G KMSKS GNV++ + + +
Sbjct: 610 GKDLIPNHLTF--FIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 337 FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELANTLGNLLNRCLSKSINPDNVNPLV 396
+ +R +++ + SD ++ + + L+++ + + +
Sbjct: 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK--QIERFYELISQFAEYEVKGNVELKDI 725
Query: 397 NRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYKGVDSIILVLHLANKFIDTTK 456
+R ++ ++ EF + A I
Sbjct: 726 DR--------------WMLHRLNKAIKETTNALEEFRTRT-------AVQWAFYSIMNDL 764
Query: 457 PWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIVPKLADKLLTRLG 503
W LR+ ++ V + + + P P + ++L +LG
Sbjct: 765 RWYLRRTEGRDDEA-KRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810
Score = 39.9 bits (93), Expect = 0.002
Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 38/175 (21%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKL----VNPRISSILTTGTDEHGLKIQNA 62
+IT Y++ H+GH T + D RF ++ V + G I
Sbjct: 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPM------AWHITGSPIVGI 90
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYD-----IEYTHYVRTTSEHHF----------RTV 107
A + K D YK+ + I Y ++ F R
Sbjct: 91 AERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREF 150
Query: 108 NT-------------VWTKLKQRDSIYPNKYKGWYCVSEESFLLEHQIRPDEKNE 149
T + KLK++ I ++ + + L +H + E
Sbjct: 151 YTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP 205
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 56.8 bits (138), Expect = 1e-08
Identities = 63/384 (16%), Positives = 115/384 (29%), Gaps = 95/384 (24%)
Query: 201 LDKNEDV------VKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP---DDDTQTI 251
+ N+++ +K ++ L+N+ D ++SR R WG P+P
Sbjct: 416 IRNNQEIHWVPPHIKEGRYGEWLKNL-----VDWALSR--NRY-WGTPLPIWVCQACGKE 467
Query: 252 YV-----WLDALMNYLTVSGYPDFHT-WPPHIQILGKDILKFHGI--------------- 290
L A + D H + +++ +
Sbjct: 468 EAIGSFQELKARATK-PLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPF 526
Query: 291 ---------------YWPAFLIAAGL-------------------EPP-KSFLVHSHWTV 315
+PA IA G+ K+ + H +
Sbjct: 527 ASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGL-IL 585
Query: 316 D--GVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELAN 373
D G KMSKS GNVVDP + F + LR+++ +D + N++ + +
Sbjct: 586 DEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGP----NLVRETVRD 641
Query: 374 TLGNLLN--RCLSKSINPDNVNPLVNRECYEVMFTKEPVLTE-LIENCQTLHEDVKLHYS 430
L N N D + K P + L+ Q L + V
Sbjct: 642 YFLTLWNVYSFFVTYANLDRPDLK-----NPPPPEKRPEMDRWLLARMQDLIQRVTEALE 696
Query: 431 EFNFYKGVDSII--LVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQ 488
++ ++ +V L+ ++ + K + +E L +
Sbjct: 697 AYDPTTSARALRDFVVEDLSQWYVRRNRR-RFWKNEDALDREAAYATLYEALVLVATLAA 755
Query: 489 PIVPKLADKL---LTRLGIPTNER 509
P P LA+ L L R +
Sbjct: 756 PFTPFLAEVLWQNLVRSVRLEAKE 779
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 47.6 bits (114), Expect = 9e-06
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 281 GKDILKFHGIYWPAFLIAAGLE-----PPKSFLVHSHWTV---DGVKMSKSVGNVVDPMS 332
G DIL W + + +G P K+ L+H V G KMSKS GNV+DP+
Sbjct: 488 GYDILFL----WVSRMEVSGYHFMGERPFKTVLLHG--LVLDEKGQKMSKSKGNVIDPLE 541
Query: 333 KLSDFTSCGLRYFLLREGTNHSDSNYSETK---AKNILN 368
+ + + LR+ L+ T D A+N N
Sbjct: 542 MVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFAN 580
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 43.8 bits (104), Expect = 9e-05
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 25/65 (38%)
Query: 309 VHSHW-TVDGVKMSKSVGNVV----------DPMSKLSDFTSCGLRYFLLREGTNH--SD 355
VH+ DG KMSKS GN+V DP + +R L + H D
Sbjct: 280 VHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSA---------IRLGLF---SGHYRED 327
Query: 356 SNYSE 360
+S
Sbjct: 328 RFWSN 332
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 41.8 bits (99), Expect = 5e-04
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 303 PPKSFLVHSHWTVD--GVKMSKSVGNVVDP 330
P K L H + +D G KMSKS+GNV+ P
Sbjct: 578 PYKFLLSHG-FVMDGEGKKMSKSLGNVIVP 606
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 41.0 bits (97), Expect = 8e-04
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 314 TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH--SDSNYSETK---AKNILN 368
++ KMSKS+GN++ L + LRYFLL + H + +YS+ + L
Sbjct: 264 EINKEKMSKSLGNIISIREALKESDVEVLRYFLL---SGHYRNPLSYSKENLENGRLALE 320
Query: 369 AELANTLGNLLNRCLSKSINPDNVNPLVNR 398
L L +N + + +R
Sbjct: 321 -RFYLALRGL------PVVNHEKTSSYTDR 343
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 40.6 bits (96), Expect = 0.001
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 314 TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNH--SDSNYSETK---AKNILN 368
VD KMSKS+GN L + + +RYFL+ + H S NYSE A+ L
Sbjct: 261 MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM---SGHYRSQLNYSEENLKQARAALE 317
Query: 369 AELANTLGNLLNRCLSKSINPDNVNPLVNR 398
L L K++ P R
Sbjct: 318 -RLYTALRG-----TDKTVAPAGGEAFEAR 341
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 38.8 bits (91), Expect = 0.003
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 28/83 (33%)
Query: 314 TVDGVKMSKSVGNVV----------DPMSKLSDFTSCGLRYFLLREGTNH--SDSNYSE- 360
+D KMSKS GN + P+ RY L T+H + +S
Sbjct: 294 IMDYNKMSKSRGNFITVKDLEDQNFSPLD---------FRYLCL---TSHYRNQLKFSLD 341
Query: 361 --TKAKNILNAELANTLGNLLNR 381
+K L N L
Sbjct: 342 NLQASKIAREN-LINKLSYFYES 363
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 34.1 bits (79), Expect = 0.14
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 319 KMSKSVGNVVDP 330
KMSKS N +DP
Sbjct: 639 KMSKSKNNGIDP 650
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 31.8 bits (73), Expect = 0.58
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 275 PHIQILGKDI-LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVD 329
HI+ L ++I +F+ +Y F + L DG KMSKS GN+++
Sbjct: 165 YHIE-LTREIARRFNYLYDEVFPEPEAILSRVPKLP----GTDGRKMSKSYGNIIN 215
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 30.1 bits (69), Expect = 2.1
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 132 SEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEG--QYVSIESNQPVEWVEEQNYMFK 189
+ F ++ + S+ + + + + + E Q EE K
Sbjct: 502 KWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLK 561
Query: 190 LSNYI----NDVAHWLDKNEDVVKPKKF-YNQLRNMCSEI 224
YI L K ED P Y+++ + E
Sbjct: 562 YEPYIERERKLNEK-LKKLEDTKIPPDIDYDKIPGLTKEA 600
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 29.4 bits (67), Expect = 3.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 275 PHIQILGKDI-LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDG-VKMSKSVGNVVDPMS 332
HI+ L ++I +F+ ++ F L P++ V +DG KMSKS+GN +
Sbjct: 153 QHIE-LTREIARRFNHLFGETFPEPQALLNPEAPRVPG---IDGKAKMSKSLGNTIG--- 205
Query: 333 KLSD 336
L +
Sbjct: 206 -LLE 208
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 29.1 bits (66), Expect = 4.0
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 275 PHIQILGKDI-LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDG-VKMSKSVGNVVDPMS 332
P ++ ++I +F+ +Y P L +DG KMSKS+GN +
Sbjct: 174 PMLE-QTREIVRRFNALYAPVLAEPQAQLSRVPRLP----GLDGQAKMSKSLGNAIA--- 225
Query: 333 KLSD 336
L D
Sbjct: 226 -LGD 228
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 29.1 bits (66), Expect = 4.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 23 HLYTALLADATHRFVKLVNPRISSILTTGT 52
+ A+ A AT R K+ R ++ TG
Sbjct: 239 AIACAVAARATGRPCKMRYDRDDDMVITGK 268
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 28.6 bits (65), Expect = 4.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 275 PHIQILGKDI-LKFHGIYWPAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVD 329
H++ + +DI LK + + F + + +V DG KMSKS N +D
Sbjct: 151 QHVE-IARDIALKVNNEWGEIFTLPEARVNEEVAVVVG---TDGAKMSKSYQNTID 202
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA
UTP-binding, transferase; 1.56A {Trypanosoma brucei}
PDB: 3hiy_A 3hj1_A*
Length = 384
Score = 28.5 bits (63), Expect = 5.4
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 382 CLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKL-------HYSEFNF 434
SK + + E F P+ L ++ + L E V +Y++++F
Sbjct: 200 VFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDF 259
Query: 435 YKGVDSI 441
G S+
Sbjct: 260 SAGTVSL 266
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 6.2
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 160 RPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKK----FYN 215
+ D + E +W EEQ + D A + + E K KK +
Sbjct: 76 QADRLTQ------EPESIRKWREEQRKRLQ----ELDAASKVMEQEWREKAKKDLEEWN- 124
Query: 216 QLRNMCSEIENDISVSR 232
+ ++E + +R
Sbjct: 125 --QRQSEQVEKNKINNR 139
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 28.7 bits (64), Expect = 6.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 25 YTALLADATHRFVKLVNPRISSILTTG 51
AL A T V+ + R +L TG
Sbjct: 811 AVALAAYKTGHPVRCMLDRNEDMLITG 837
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 28.4 bits (62), Expect = 7.2
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Query: 168 QYVSIESNQPVEWV----------EEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQL 217
++I S+ V E+ MF L Y V ++ V + +L
Sbjct: 229 CKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVADVLAKFEKL 288
Query: 218 RNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYL 262
+ VP D + +++ A +
Sbjct: 289 AATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVI 333
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 27.9 bits (63), Expect = 8.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 23 HLYTALLADATHRFVKLVNPRISSILTTGT 52
+ ALL T + VK+V R S +
Sbjct: 248 QCHCALLTYHTKKPVKMVRSREESTTVSSK 277
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 27.9 bits (63), Expect = 9.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 319 KMSKSVGNVVDP 330
MSKS GN V
Sbjct: 637 VMSKSKGNGVMV 648
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,187,083
Number of extensions: 490111
Number of successful extensions: 1151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1096
Number of HSP's successfully gapped: 48
Length of query: 528
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,965,535
Effective search space: 1705180050
Effective search space used: 1705180050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)