RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4049
(528 letters)
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 198 bits (503), Expect = 2e-59
Identities = 76/382 (19%), Positives = 147/382 (38%), Gaps = 52/382 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+T + Y N S H+GH+ + AD R+ ++ + D HG I A +
Sbjct: 5 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEV--NFICADDAHGTPIMLKAQQL 62
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ ++S +++ F ++I Y +Y T SE + + ++++LK+ I
Sbjct: 63 GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 122
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
Y + FL + + S + +++
Sbjct: 123 QLYDPEKGMFLPDRFV------------------------------VSGATPVMRDSEHF 152
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F L ++ + W ++ N+++ +SR ++G +P+
Sbjct: 153 FFDLPSFSEMLQAWTRSGAL---QEQVANKMQEWFESGLQQWDISRD--APYFGFEIPNA 207
Query: 247 DTQTIYVWLDALMNYLTVSGYP--------------DFHTWPPHIQILGKDILKFHGIYW 292
+ YVWLDA + Y+ + +GKDI+ FH ++W
Sbjct: 208 PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFW 267
Query: 293 PAFLIAAGLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTN 352
PA L + P + VH + TV+G KMSKS G + + L+ F + LRY+ + ++
Sbjct: 268 PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSS 327
Query: 353 -HSDSNYSETKAKNILNAELAN 373
D + + +NA++ N
Sbjct: 328 RIDDIDLNLEDFVQRVNADIVN 349
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 170 bits (430), Expect = 7e-49
Identities = 128/373 (34%), Positives = 193/373 (51%), Gaps = 31/373 (8%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ ++TTPI+YVNA PH+GH YT ++AD R+ +L R TGTDEHG + A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRT--FFLTGTDEHGETVYRA 59
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYP 122
A + F +++S ++K + I Y ++RTT E H + V V K+ + IY
Sbjct: 60 AQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 123 NKYKGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVE 182
+Y+G YCVS E F E ++ VE +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVEGLCPIHGRP------------------------VERRK 155
Query: 183 EQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIP 242
E NY F++ Y + ++ +N D+++P+ + N++ M +E D+S+SRPK+RV WGIP
Sbjct: 156 EGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIP 215
Query: 243 VPDDDTQTIYVWLDALMNYLTVSGYPDF----HTWPPHIQILGKDILKFHGIYWPAFLIA 298
+P D+ +VW DAL+NY++ YP+ WP ++GKDILK H ++WP L A
Sbjct: 216 LPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKA 275
Query: 299 AGLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSN 357
AG+ + V DG KMSK++GNVVDP + L + LRY+LLRE D+
Sbjct: 276 AGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTP 335
Query: 358 YSETKAKNILNAE 370
SE + A+
Sbjct: 336 VSEEALRTRYEAD 348
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 161 bits (407), Expect = 2e-45
Identities = 87/395 (22%), Positives = 151/395 (38%), Gaps = 68/395 (17%)
Query: 7 FITTPIFYVNASPHIGHL-YTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIK 65
+T+ + Y N H GHL L AD R+++L + + GTDEHG I A+K
Sbjct: 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDV--VFICGTDEHGTPISFRALK 62
Query: 66 HKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKY 125
+ ++ +Q K+ F+ I + + RT H++ + K + +
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVT 122
Query: 126 KGWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQN 185
K YC ++ FL + +P+ + + +
Sbjct: 123 KQAYCEHDKMFLPDRFAI------------------------------CGRPISFRDSAH 152
Query: 186 YMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVP- 244
Y K+ ++ + W++K N + S IE + ++WGIPVP
Sbjct: 153 YYIKMQDFAERLKRWIEKQPW------KPNVKNMVLSWIEEGLEERAITRDLNWGIPVPL 206
Query: 245 ---DDDTQTIYVWLDALMNYLTVSGYP---------------DFHTWPPHIQILGKDILK 286
D + +YVW +A + Y++++ + I +GKD +
Sbjct: 207 DEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP 266
Query: 287 FHGIYWPAFLIAA----------GLEPPKSFLVHSHWTVDGVKMSKSVGNVVDPMSKLSD 336
FH I+WPAFL+A P + + T++G K S S + L
Sbjct: 267 FHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV 326
Query: 337 FTSCGLRYFLLREGTNHSDSNYSETKAKNILNAEL 371
F + LRY+L DS++S + K +N EL
Sbjct: 327 FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 148 bits (375), Expect = 3e-40
Identities = 73/397 (18%), Positives = 127/397 (31%), Gaps = 36/397 (9%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
K I P V S H+GH L DA R+ ++ + GTD G+ Q
Sbjct: 33 KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEA--VWLPGTDHAGIATQVV 90
Query: 63 AIKHKLE--------------------TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEH 102
+ L+ + I Q K + + D + T E
Sbjct: 91 VERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAF--TMDEK 148
Query: 103 HFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEESFL--LEHQIRPDEKNEEESFLLEHQIR 160
R V +++ Y +C E+ L LE + E +
Sbjct: 149 RSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWWL 208
Query: 161 PDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNED--VVKPKKFYNQLR 218
+ + + +V + + +++ +V W + + +Y +
Sbjct: 209 RMRPLAEEVLKGLRRGDIAFVP-ERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 267
Query: 219 NMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYP----DFHTWP 274
+ + + P + G P D W + + L+ G+P D +
Sbjct: 268 QAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFY 327
Query: 275 PH-IQILGKDILKFHGIYWPAFLIAA-GLEPPKSFLVHSHW-TVDGVKMSKSVGNVVDPM 331
P + + G DIL G P K+ L+H G KMSKS GNV+DP+
Sbjct: 328 PGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPL 387
Query: 332 SKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368
+ + + LR+ L+ T D + N
Sbjct: 388 EMVERYGADALRFALIYLATGGQDIRLDLRWLEMARN 424
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 133 bits (336), Expect = 1e-34
Identities = 65/400 (16%), Positives = 127/400 (31%), Gaps = 43/400 (10%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
+ Y N + H+GH +L D R+ + G D HGL I+ A K
Sbjct: 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYA--PYVPGWDTHGLPIEQALTKK 108
Query: 67 KLETIDFCNKISDQYKLMFKTYDIE--------------YTHYVRTTSEHHFRTVNTVWT 112
++ + F IE + T + ++
Sbjct: 109 GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFG 168
Query: 113 KLKQRDSIYPNKYKGWYCVSEESFLLEHQIR---------PDEKNEEESFLLEHQIRPDE 163
++ + IY K ++ S ES L E +I P + +
Sbjct: 169 EMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQD 228
Query: 164 KNEGQYVSIESNQPVEWVEEQNYM-------FKLSNYINDVAHWLDKNEDVVKPKKFYNQ 216
+ + + + + + + +N +++ K+ N
Sbjct: 229 ILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNH 288
Query: 217 LRNMCSEIENDISVSRPKARVH-WGIPVPDD-------DTQTIYVWLDALMNYLTVSGYP 268
+ ++ +E ++I R + G P +T + VW D+ ++ V
Sbjct: 289 VADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR 348
Query: 269 DFHTWPPHIQILGKDILKF-HGIYWPAFLIAAGLEPPKSFLVHSHW-TVDGVKMSKSVGN 326
++P + + G D + + G+ P K L H +G KMSKS+GN
Sbjct: 349 PELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGN 408
Query: 327 VVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNI 366
V+ P + + R ++ +D S+ K
Sbjct: 409 VIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQT 447
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 117 bits (294), Expect = 3e-29
Identities = 59/415 (14%), Positives = 105/415 (25%), Gaps = 57/415 (13%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAI-- 64
+ N PH+GH D R+ + G D HGL ++
Sbjct: 41 TVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYA--PRRAGWDTHGLPVELEVEKK 98
Query: 65 ---------------KHKLETIDFCNKISDQYKLMFKTYDI--EYTHYVRTTSEHHFRTV 107
+ + +++ + + T + ++
Sbjct: 99 LGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESI 158
Query: 108 NTVWTKLKQRDSIYPNKY----------------------KGWYCVSEESFLLEHQ---I 142
L R +Y + W C + +
Sbjct: 159 WWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIK 218
Query: 143 RPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYINDVAHWLD 202
K+E E P EG+Y N + Y A +
Sbjct: 219 NTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKE 278
Query: 203 KNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYL 262
+ + K + I VW D+
Sbjct: 279 EAIGSFQELKARATKPLPEPFDPHR-PYVDQVELACACGGTMRRVPYVIDVWYDSGAMPF 337
Query: 263 TVSGYPDFHT------WPPHIQILGKDILK--FHGIYWPAFLIAAGLEPPKSFLVHSHW- 313
YP H +P G D + F+ ++ ++ G K+ + H
Sbjct: 338 ASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLF-GSIAFKNVICHGLIL 396
Query: 314 TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILN 368
G KMSKS GNVVDP + F + LR+++ +D + + +
Sbjct: 397 DEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR 451
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 103 bits (256), Expect = 5e-24
Identities = 47/332 (14%), Positives = 104/332 (31%), Gaps = 25/332 (7%)
Query: 3 KSTCFITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNA 62
+ ++ Y + H+GHL + D RF ++ + + G D GL +NA
Sbjct: 32 RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEV--LHPMGWDAFGLPAENA 89
Query: 63 AIKHKLETIDFCNKISDQYKLMFKTYDIEY--THYVRTTSEHHFRTVNTVWTKLKQRDSI 120
A+K + D+ Q K + I Y V T ++R ++ K+ ++
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 121 YPNKYKGWYCVSEESFLLEHQI----------RPDEKNEEESFLLEHQIRPDEKNEGQYV 170
Y K +C ++ L Q+ P EK E E + L + +
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEG 209
Query: 171 SIESNQPVEWVEEQNYMFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISV 230
+ ++ ++ +L +++ + +V + +
Sbjct: 210 LNWPEKVKAM--QRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDL 267
Query: 231 SRPKARVHWGIPVPD---DDTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILK- 286
+ G + + +T T + F + +++ +
Sbjct: 268 KDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRL 327
Query: 287 -----FHGIYWPAFLIAAGLEPPKSFLVHSHW 313
+ P G+E L++S +
Sbjct: 328 PFDPEKANAWMPVDQYIGGVEHAVLHLLYSRF 359
Score = 45.0 bits (105), Expect = 2e-05
Identities = 28/300 (9%), Positives = 69/300 (23%), Gaps = 15/300 (5%)
Query: 78 SDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKG------WYCV 131
+Q+ L Y + + + RD + + +C
Sbjct: 189 LEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVHCE 248
Query: 132 SEESFLLEHQIRPDE--KNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYM-- 187
+ + + P ++ + P E + Y + + + M
Sbjct: 249 ACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDT 308
Query: 188 -FKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
F S Y + K + + +R
Sbjct: 309 FFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLG 368
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKS 306
+ + + ++ + + + + L + +
Sbjct: 369 MVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGA 428
Query: 307 FLVHS----HWTVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETK 362
L MSKS GN V + + + R +L ++ ++E
Sbjct: 429 ELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEG 488
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 86.5 bits (213), Expect = 3e-19
Identities = 55/358 (15%), Positives = 104/358 (29%), Gaps = 74/358 (20%)
Query: 15 VNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLETIDFC 74
V HIGH T + D R+++ + ++ + KI A ++ +
Sbjct: 32 VYDLCHIGHGRTFVAFDVVARYLRFLGYKL--KYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 75 NKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWYCVSEE 134
+++ + F +I + H + +L + Y
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIEL-TEQLIAKGHAYVADNGDVMF---- 144
Query: 135 SFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFKLSNYI 194
+ + ++ + + D+ G V + + + ++K+S
Sbjct: 145 -----------DVPTDPTYGVLSRQDLDQLQAGARVDVVDD---KRNPMDFVLWKMSKE- 189
Query: 195 NDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVW 254
P WG P + +
Sbjct: 190 ------------------------------------GEPSWPSPWGAGRPGWHIECSAMN 213
Query: 255 LDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLVHSHWT 314
L N+ + G +P H + + G Y ++
Sbjct: 214 CKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQY------------VNYWMHSGMVM 261
Query: 315 VDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKAKNILNAELA 372
VD KMSKS+GN L + + +RYFL+ G S NYSE +N+ A A
Sbjct: 262 VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQLNYSE---ENLKQARAA 315
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 66.8 bits (162), Expect = 8e-14
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 371 LANTLGNLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYS 430
LA+ LGNL+ R + ++ R + EPV E + L ++
Sbjct: 1 LADDLGNLVQRTRA----------MLFRFAEGRI--PEPVAGEELAEGTGLAGRLRPLVR 48
Query: 431 EFNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPI 490
E F+ ++ + + N++I+ KPW + + EE VL E LRI I L P
Sbjct: 49 ELKFHVALEEAMAYVKALNRYINEKKPW-ELFKKEPEEARAVLYRVVEGLRIASILLTPA 107
Query: 491 VPKLADKLLTRLGIPTNERLWDNMRF 516
+P +L LG+ RL + R+
Sbjct: 108 MPDKMAELRRALGLKEEVRLEEAERW 133
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 69.4 bits (168), Expect = 1e-13
Identities = 30/346 (8%), Positives = 74/346 (21%), Gaps = 63/346 (18%)
Query: 7 FITTPIFYVNASPHIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKH 66
++ + H+G+ A ++ + I D++ +
Sbjct: 20 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHI--HMWDDYDRFRKVPRNVP 77
Query: 67 KLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYK 126
+ IS+ + E + + +
Sbjct: 78 QEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 137
Query: 127 GWYCVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNY 186
E + +E + +Q
Sbjct: 138 IRLAF----------------------------------EKRDKIMEILNKYREIAKQPP 163
Query: 187 MFKLSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
+ + + ++++ + E + + ++ W +
Sbjct: 164 LPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW--- 220
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLE--PP 304
+ + + GKD L Y I +
Sbjct: 221 --------------------PMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEA 260
Query: 305 KSFLVHSHWTVDG--VKMSKSVGNVVDPMSKLSDFTSCGLRYFLLR 348
L++ + G KMS S GNV+ +R+ R
Sbjct: 261 PLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYAR 306
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 53.9 bits (129), Expect = 3e-09
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 377 NLLNRCLSKSINPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSEFNFYK 436
NL +R +N+ V+ E +L + E + + F K
Sbjct: 3 NLASRNAG----------FINKRFDGVL-ASELADPQLYKTFTDAAEVIGEAWESREFGK 51
Query: 437 GVDSIILVLHLANKFIDTTKPWTLRK-ENKIEELNLVLGVTFEVLRICGIGLQPIVPKLA 495
V I+ + LAN+++D PW + K E + +L + + + R+ L+P++PKL
Sbjct: 52 AVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLT 111
Query: 496 DKLLTRLGIPTNERLWDN 513
++ L WD
Sbjct: 112 ERAEAFLNTELT---WDG 126
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 43.3 bits (101), Expect = 2e-05
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
Query: 373 NTLGNLLNRCLSKSI-NPDNVNPLVNRECYEVMFTKEPVLTELIENCQTLHEDVKLHYSE 431
N LGN ++R L+ D V P + + E +E + ++V
Sbjct: 2 NNLGNFVHRALTFVNRYFDGVVPERG--------ELDELDREALEEIEKAFKEVGELIMN 53
Query: 432 FNFYKGVDSIILVLHLANKFIDTTKPWTLRKENKIEELNLVLGVTFEVLRICGIGLQPIV 491
+ F + ++ + N++ D +PW + + ++ ++++ GI L+P +
Sbjct: 54 YRFKDALKRVMSLASFGNRYFDHKQPW-KTAKEDKVRTGTTVNISLQIVKALGILLEPFL 112
Query: 492 PKLADKLLTRLGIPTNER 509
P ++K+ L + +R
Sbjct: 113 PDASEKIWHLLNLDEVKR 130
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 32.2 bits (72), Expect = 0.15
Identities = 48/373 (12%), Positives = 94/373 (25%), Gaps = 53/373 (14%)
Query: 14 YVNASP----HIGHLYTALLADATHRFVKLVNPRISSILTTGTDEHGLKIQNAAIKHKLE 69
+ + +P H+GHL L DA I+ IL A ++
Sbjct: 13 HTSVNPNKELHVGHLRNIALGDA-----------IARIL-------------AYAGREVL 48
Query: 70 TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWY 129
+++ + Q + HF V +
Sbjct: 49 VLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVL 108
Query: 130 CVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFK 189
E L E R L + + + + +E+ ++F+
Sbjct: 109 HALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFR 168
Query: 190 LSNYINDVAHWLDKNEDVV---KPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDD 246
A +D + + P + + DI+ K + G+
Sbjct: 169 PREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPY 228
Query: 247 DTQTIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKS 306
+ + G I ++ + A L AG
Sbjct: 229 ENPY-----YPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVR-AALALAGYPALAE 282
Query: 307 FLVHSHW---TVDGVKMSKSVGNVVDPMSKLSDFTSCGLRYFLLREGTNHSDSNYSETKA 363
H + ++G +MS G V + + +L E T + + E
Sbjct: 283 KAHHLAYETVLLEGRQMSGRKGLAV----SVDE---------VLEEATRRARAIVEEKNP 329
Query: 364 KNILNAELANTLG 376
+ E A +
Sbjct: 330 DHPDKEEAARMVA 342
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 29.2 bits (64), Expect = 1.5
Identities = 25/271 (9%), Positives = 69/271 (25%), Gaps = 18/271 (6%)
Query: 17 ASPHIGHLYTALLADATHRFVKLVNPRISSILTTG-------TDEHGLKIQNAAIKHKLE 69
A H L LL+ A R V+ + R + L + +
Sbjct: 94 AHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENR 153
Query: 70 TIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTKLKQRDSIYPNKYKGWY 129
+I ++ + + + K Y
Sbjct: 154 SITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAG 213
Query: 130 CVSEESFLLEHQIRPDEKNEEESFLLEHQIRPDEKNEGQYVSIESNQPVEWVEEQNYMFK 189
++ E+ + + + + P++ ++++ +++ N + +
Sbjct: 214 QIARETLI--DRAARQLGLSPFEIRRRNVVMPEDFPF-TNRLGQTHREGTYLQTINLLEE 270
Query: 190 LSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQ 249
+ N + + + + N+++ + + G P D+
Sbjct: 271 MVNPEAFRQRQAEARAR--------GKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHDSA 322
Query: 250 TIYVWLDALMNYLTVSGYPDFHTWPPHIQIL 280
T+ + + T QI
Sbjct: 323 TVRIDPTGKVTVTTSLASSGQGHETTLAQIA 353
>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase,
catalytic domain {Alcaligenes faecalis [TaxId: 511]}
Length = 358
Score = 29.0 bits (64), Expect = 1.5
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 474 GVTFEVLRICGIGLQPIVPKLADKLLTRLGIPTNERLWDNMRFSD 518
GVT V CGI L P+ L L + + RFSD
Sbjct: 26 GVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGS---FRFARFSD 67
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.8 bits (61), Expect = 1.6
Identities = 11/67 (16%), Positives = 20/67 (29%)
Query: 214 YNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQTIYVWLDALMNYLTVSGYPDFHTW 273
+N+LR + + + +A + V L N L S
Sbjct: 29 HNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 88
Query: 274 PPHIQIL 280
P + +L
Sbjct: 89 CPRLVLL 95
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal
domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
[TaxId: 29339]}
Length = 263
Score = 27.9 bits (62), Expect = 2.5
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 57 LKIQNAAIKHKLETIDFCNKISDQYKLMFKTYDIEYTHYVRTTSEHHFRTVNTVWTK 113
L I + + Y+ + Y +Y++Y T + FR +NT
Sbjct: 185 LSFIRDVILNA-DEWGISAATLRTYRDYLRNYTRDYSNYCINTYQTAFRGLNTRLHD 240
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 27.4 bits (60), Expect = 3.6
Identities = 22/161 (13%), Positives = 37/161 (22%), Gaps = 26/161 (16%)
Query: 190 LSNYINDVAHWLDKNEDVVKPKKFYNQLRNMCSEIENDISVSRPKARVHWGIPVPDDDTQ 249
L I+ V + K + + + PK G+P
Sbjct: 56 LPEKIDAVYEAPQEE------KAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVD 109
Query: 250 TIYVWLDALMNYLTVSGYPDFHTWPPHIQILGKDILKFHGIYWPAFLIAAGLEPPKSFLV 309
+ W Y+ F + + + K W A P +
Sbjct: 110 AAFNWSKNKKTYIFAGDK--FWRYNEVKKKMDPGFPKLIADAWNA--------IPDNLDA 159
Query: 310 HSHWTVDG----------VKMSKSVGNVVDPMSKLSDFTSC 340
G +K+ V S SD+ C
Sbjct: 160 VVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 200
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase,
substrate-binding domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 85
Score = 25.5 bits (56), Expect = 5.2
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 149 EEESFLL---EHQIRPDEKNEGQYVSIES-NQPVEWVEEQNYMFKLSNY 193
+ +LL +H++ D EG + + QP V + L+N
Sbjct: 1 DSLIYLLQPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTTGLKWNLTND 49
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of
antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Length = 102
Score = 25.5 bits (56), Expect = 6.3
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 26 TALLADATHRFVKL----VNPRISSILTTGTDEHGLKIQNAAIKHKLETI 71
++ + TH + + I T++ L ++ A + + T+
Sbjct: 16 KLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTV 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,052,573
Number of extensions: 99385
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 30
Length of query: 528
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 439
Effective length of database: 1,185,626
Effective search space: 520489814
Effective search space used: 520489814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)