BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy405
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1 MAKVTKKDGDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
MA T K ++ +FL +L+ FH +RG+P + +P +GGKE+DL+ LY VT+ GG+
Sbjct: 1 MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGF 60
Query: 61 VK 62
K
Sbjct: 61 AK 62
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 2 AKVTKKDGDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWV 61
AK+ + DGD E++ FL DL F + RGTP +P + + +DLY+LY LVT GG V
Sbjct: 207 AKLYELDGDP---ERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLV 263
Query: 62 K 62
+
Sbjct: 264 E 264
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 2 AKVTKKDGDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWV 61
AK+ + DGD E++ FL DL F + RGTP +P + + +DLY+LY LVT GG V
Sbjct: 205 AKLYELDGDP---ERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLV 261
Query: 62 K 62
+
Sbjct: 262 E 262
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 8 DGDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
DGD KE FL DL F + RGTP +P + + +DLY+LY LVT GG V+
Sbjct: 210 DGDPKRKE---FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVE 261
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 8 DGDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
DGD KE FL DL F + RGTP +P + + +DLY+LY LVT GG V+
Sbjct: 207 DGDPKRKE---FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVE 258
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 8 DGDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
DGD KE FL DL F + RGTP +P + + +DL++LY LVT GG V+
Sbjct: 236 DGDPKRKE---FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVE 287
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
DA K KE FL DL F + RGTP +P + + +DL++LY LVT GG V+
Sbjct: 241 DADPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVE 292
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 14 KEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
++++ FL DL F + RGTP +P + + +DLY LY LVT GG V+
Sbjct: 233 EKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVE 281
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
DA K KE FL DL F + RGTP VP + + +DLY L+ LVT+ GG V+
Sbjct: 108 DADPKRKE-FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVE 159
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
DA K KE FL DL F + RGTP VP + + +DLY L+ LVT+ GG V+
Sbjct: 111 DADPKRKE-FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVE 162
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
D K KE FL DL F + RGTP +P + + +DLY LY LV GG V+
Sbjct: 247 DDDIKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVE 298
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
+++ FL DL + + RGTP +P + + +DLY LY LV + GG V+
Sbjct: 204 KRKEFLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVE 251
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWV 61
+++ FL DL F + RGTP +P + +DLY LY LV + GG V
Sbjct: 295 KRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLV 341
>sp|O74365|SOL1_SCHPO SWI/SNF chromatin-remodeling complex subunit sol1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sol1 PE=1 SV=1
Length = 865
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 11 AYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGG 59
AY + F+ L F E RGTP + P+I I+L +LY LV GG
Sbjct: 186 AYAASFDKFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGG 234
>sp|Q9P7W8|RSC9_SCHPO Chromatin structure-remodeling complex subunit rsc9
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc9 PE=1 SV=1
Length = 780
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
E +SFL ++ F + RG P PKIG K I LY LY V GG+
Sbjct: 22 ENDSFLSLIESFSQERGVPIDINPKIGRKPILLYELYKKVIKRGGY 67
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 14 KEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
K+ F L+ FH T +P IGGKE+DL++LY VT GG+ K
Sbjct: 39 KDSSVFWDTLRRFHSIMSTKFM-IPVIGGKELDLHVLYVEVTRRGGYEK 86
>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein 4A OS=Homo sapiens
GN=ARID4A PE=1 SV=3
Length = 1257
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 16 KESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGG 59
+++FL+ L F E RGTP P +G K+++L+ L+ LV GG
Sbjct: 312 RDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGG 355
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
++ +L L+ F E R TP P I + +DLY LY V GG+V+
Sbjct: 1002 DRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVE 1049
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana
GN=HMGB15 PE=2 SV=1
Length = 448
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGG 59
+A + F+ L+ H GT VP IGG+++DL+ L+ VTS GG
Sbjct: 26 EAVVADPRLFMTSLERLHSLLGTKFM-VPIIGGRDLDLHKLFVEVTSRGG 74
>sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens
GN=ARID1B PE=1 SV=2
Length = 2236
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 26 FHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGG 59
F E RG+P +P +G K +DL+ LY V GG
Sbjct: 1066 FMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGG 1099
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 14 KEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
++ F L+ F++ R +P + G E++LY LY V + GGW K
Sbjct: 25 RKMAEFYNSLRMFYKRRWNATLKLPHVQGVEVNLYRLYDTVMALGGWQK 73
>sp|Q4LE39|ARI4B_HUMAN AT-rich interactive domain-containing protein 4B OS=Homo sapiens
GN=ARID4B PE=1 SV=2
Length = 1312
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 18 SFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
+FL+ L F E RGTP P +G + ++L+ L+ LV GG+
Sbjct: 311 NFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGF 353
>sp|Q9JKB5|ARI4B_RAT AT-rich interactive domain-containing protein 4B OS=Rattus
norvegicus GN=Arid4b PE=2 SV=1
Length = 1228
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 18 SFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
+FL+ L F E RGTP P +G + ++L+ L+ LV GG+
Sbjct: 311 NFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGF 353
>sp|A2CG63|ARI4B_MOUSE AT-rich interactive domain-containing protein 4B OS=Mus musculus
GN=Arid4b PE=1 SV=1
Length = 1314
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 18 SFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
+FL+ L F E RGTP P +G + ++L+ L+ LV GG+
Sbjct: 311 NFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGF 353
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 14 KEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
+ E F L+ FHE+ + +P +GGK +DL+ L+ VTS GG K
Sbjct: 35 RNPELFWEMLRDFHESSDKKFK-IPIVGGKSLDLHRLFNEVTSRGGLEK 82
>sp|E7F888|ARI5B_DANRE AT-rich interactive domain-containing protein 5B OS=Danio rerio
GN=arid5b PE=3 SV=1
Length = 1044
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 9 GDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
GD ++++FL L + + R TP +P +G K+I+L+ ++ GG+
Sbjct: 208 GDECRTDEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 259
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
+++ +L D +F G P +P + + +DLY LY LV +GG V+
Sbjct: 183 KRKEWLDDWLNFMHRIGKPVTRIPIMAKQVLDLYELYRLVVQHGGLVE 230
>sp|Q3SWY1|ARI5A_BOVIN AT-rich interactive domain-containing protein 5A OS=Bos taurus
GN=ARID5A PE=2 SV=1
Length = 592
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 18 SFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
+FL L F + R TP VP +G K+I+L+ +Y V G +
Sbjct: 57 AFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAY 99
>sp|Q03989|ARI5A_HUMAN AT-rich interactive domain-containing protein 5A OS=Homo sapiens
GN=ARID5A PE=1 SV=2
Length = 594
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 19 FLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
FL L F + R TP VP +G K+I+L+ +Y V G +
Sbjct: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAY 102
>sp|Q3U108|ARI5A_MOUSE AT-rich interactive domain-containing protein 5A OS=Mus musculus
GN=Arid5a PE=1 SV=1
Length = 590
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 19 FLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
FL L F + R TP VP +G K+I+L+ +Y V G +
Sbjct: 56 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAY 97
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 9 GDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
G+ ++++FL L + + R TP +P +G K+I+L+ ++ GG+
Sbjct: 317 GEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 368
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 9 GDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
G+ ++++FL L + + R TP +P +G K+I+L+ ++ GG+
Sbjct: 318 GEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 369
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 9 GDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
G+ ++++FL L + + R TP +P +G K+I+L+ ++ GG+
Sbjct: 314 GEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 365
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 9 GDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
G+ ++++FL L + + R TP +P +G K+I+L+ ++ GG+
Sbjct: 315 GEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 366
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 9 GDAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
G+ ++++FL L + + R TP +P +G K+I+L+ ++ GG+
Sbjct: 315 GEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 366
>sp|Q9HDV4|LID2_SCHPO Lid2 complex component lid2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=lid2 PE=1 SV=1
Length = 1513
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 13 FKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLL 50
+++ + + L+ FHE+RG H P IG + +D L
Sbjct: 121 YEKNYDYFKKLKAFHESRGLYFYHPPIIGNRPVDFLRL 158
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGG 59
+A + K +FL + F E +G+ + +P + K +DLY L+ +V GG
Sbjct: 223 EAKTRVKLNFLDQIAKFWELQGSSLK-IPMVERKALDLYTLHRIVQEEGG 271
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
+A + + FL L F E +G+ + +P + K +DLY L +V S GG+
Sbjct: 81 EAMTRVRLDFLDQLAKFWELQGSTLK-IPVVERKILDLYALSKIVASKGGF 130
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana
GN=HMGB10 PE=2 SV=1
Length = 319
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 37 VPKIGGKEIDLYLLYCLVTSNGG 59
VP +GG +DL+ L+ VTS GG
Sbjct: 63 VPTVGGNTLDLHRLFIEVTSRGG 85
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 DAYFKEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
+A + + FL L F E +G+ + +P + K +DLY L +V S GG+
Sbjct: 81 EAMTRVRLDFLDQLAKFWELQGSTLK-IPVVERKILDLYALSKIVASKGGF 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,001,877
Number of Sequences: 539616
Number of extensions: 911144
Number of successful extensions: 1488
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 49
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)