RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy405
         (66 letters)



>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 107

 Score = 59.9 bits (145), Expect = 2e-14
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
          ++++FL  L  + + R TP   +P +G K+I+L+ ++      GG+
Sbjct: 3  DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 48


>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 102

 Score = 59.5 bits (144), Expect = 2e-14
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 14 KEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVK 62
          K+ E F++ L    + R  P + +P+IG ++I+L+ LY LV   GG  +
Sbjct: 3  KQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQ 51


>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 120

 Score = 59.1 bits (143), Expect = 6e-14
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 15 EKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
          E++ ++     F E +     ++P +G K +DLY LY  V   GG 
Sbjct: 20 ERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGL 65


>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
          protein {Fruit fly (Drosophila melanogaster) [TaxId:
          7227]}
          Length = 128

 Score = 59.2 bits (143), Expect = 7e-14
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 14 KEKESFLRDLQHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGW 60
           +++ FL DL  F + RGTP   +P +    +DLY LY LV + GG 
Sbjct: 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGL 67


>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 23.6 bits (51), Expect = 1.8
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 11/43 (25%)

Query: 24 QHFHETRGTPCRHVPKIGGKEIDLYLLYCLVTSNGGWVKKCTA 66
          Q+F+ET+  P  +     G         C       W  +C  
Sbjct: 44 QYFYETKCNPMGYTK--EG---------CRGIDKRHWNSQCRT 75


>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 107

 Score = 22.8 bits (49), Expect = 3.2
 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 13/44 (29%)

Query: 24 QHFHETRGTPCRHV-PKIGGKEIDLYLLYCLVTSNGGWVKKCTA 66
          Q+F ET+   CR   P   G         C    +  W   CT 
Sbjct: 42 QYFFETK---CRASNPVESG---------CRGIDSKHWNSYCTT 73


>d1bndb_ g.17.1.3 (B:) Neurotrophin 3, NT3 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 108

 Score = 22.1 bits (47), Expect = 6.0
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 13/44 (29%)

Query: 24 QHFHETRGTPCRHV-PKIGGKEIDLYLLYCLVTSNGGWVKKCTA 66
          Q+F+ETR   C+   P   G         C    +  W  +C  
Sbjct: 43 QYFYETR---CKEARPVKNG---------CRGIDDKHWNSQCKT 74


>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 451

 Score = 22.2 bits (47), Expect = 6.9
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 2   AKVTKKDGDAYFKEKESFLRDLQHFHETRGTPCRH 36
             V+++        KE +L   + F    G P   
Sbjct: 66  CGVSEEYITGSRSNKEKWLALAKVFPRFVGNPTYE 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,199
Number of extensions: 9837
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 9
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)