Query psy4050
Match_columns 472
No_of_seqs 353 out of 1735
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:03:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 2.8E-40 9.5E-45 341.7 15.7 210 158-373 89-381 (396)
2 2qfz_A TBC1 domain family memb 100.0 1.6E-38 5.3E-43 323.3 16.7 209 158-373 107-335 (345)
3 2qq8_A TBC1 domain family memb 100.0 1.2E-37 4E-42 315.4 20.6 201 157-375 111-313 (334)
4 4hl4_A TBC1 domain family memb 100.0 1.2E-37 4.2E-42 309.6 19.7 257 94-375 17-290 (292)
5 3qye_A TBC1 domain family memb 100.0 1.9E-36 6.5E-41 306.1 21.9 200 156-372 104-309 (331)
6 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.4E-37 8.3E-42 310.0 14.8 201 155-372 69-276 (310)
7 3qwl_A TBC1 domain family memb 100.0 1.8E-29 6.1E-34 250.1 16.9 242 93-374 22-286 (294)
8 1fkm_A Protein (GYP1P), ORF YO 98.6 1.8E-08 6E-13 103.7 5.1 86 381-468 231-381 (396)
9 2qfz_A TBC1 domain family memb 98.4 2.1E-07 7.1E-12 93.9 5.6 86 381-468 244-335 (345)
10 3qwl_A TBC1 domain family memb 98.3 6.5E-07 2.2E-11 88.3 6.5 77 385-466 206-283 (294)
11 2qq8_A TBC1 domain family memb 98.2 2.5E-06 8.4E-11 85.7 7.2 82 381-466 228-309 (334)
12 4hl4_A TBC1 domain family memb 97.9 1.1E-05 3.7E-10 79.3 6.9 83 381-467 202-287 (292)
13 3qye_A TBC1 domain family memb 97.8 1.9E-05 6.4E-10 78.9 6.1 83 381-467 223-309 (331)
14 3hzj_A Rabgap1L, RAB GTPase-ac 97.5 3.6E-05 1.2E-09 76.2 3.5 82 381-466 189-275 (310)
15 2cwy_A Hypothetical protein TT 29.8 54 0.0018 25.8 4.1 48 418-466 41-92 (94)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.8e-40 Score=341.73 Aligned_cols=210 Identities=26% Similarity=0.538 Sum_probs=185.8
Q ss_pred hhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCc-----------------
Q psy4050 158 VLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPV----------------- 220 (472)
Q Consensus 158 ~i~~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~----------------- 220 (472)
.|+.|+.|+++++..|.. +..++.|+|||.+|+.+||++|||||||+|+++|++++..+..
T Consensus 89 qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l 166 (396)
T 1fkm_A 89 QIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYM 166 (396)
T ss_dssp HHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTC
T ss_pred HHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhcc
Confidence 478889899888877764 4578999999999999999999999999999999998753210
Q ss_pred -ccccccchhhHHHHHHHHHHHhHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhc
Q psy4050 221 -LDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLS 299 (472)
Q Consensus 221 -~~~~~~~E~daF~~f~~Lm~~~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs 299 (472)
.+...+.|++|||||++||+.++++|.+ +.+|+...+..++.+|+.+||+|++||.+.|+++.+|+++||+++|+
T Consensus 167 ~~~~~~~~E~daF~~f~~lm~~~~~~f~~----~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~ 242 (396)
T 1fkm_A 167 VDEQITDLEADTFWCLTKLLEQITDNYIH----GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLM 242 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGSST----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTG
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0112334999999999999998888875 56799999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhcCc---------------------------------------------------C---------
Q psy4050 300 QEFPLPDVLRIWDSLFADE---------------------------------------------------L--------- 319 (472)
Q Consensus 300 ~~fp~~~vlriWD~l~~~g---------------------------------------------------~--------- 319 (472)
++||+++++||||.+|++| +
T Consensus 243 ~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (396)
T 1fkm_A 243 REFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQS 322 (396)
T ss_dssp GGSCHHHHHHHHHHHHHHHC------------------------------------------------------------
T ss_pred hhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcccc
Confidence 9999999999999999988 2
Q ss_pred c-hhHHHHHHHHHHHHhhhhcCCCChHHHHHHHccCCCC----CCHHHHHHHHHHhhcc
Q psy4050 320 R-FSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSS----VDIPTVISKAVELAGR 373 (472)
Q Consensus 320 ~-~~~l~~i~lA~L~~~r~~Ll~~d~~~il~~L~~~p~~----~Dv~~ll~~A~~l~~~ 373 (472)
+ ..|++++|+|||..+|++|++.||++++++|+++|.. .|++.++++|+.++..
T Consensus 323 ~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~ 381 (396)
T 1fkm_A 323 SLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSL 381 (396)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHH
Confidence 1 3789999999999999999999999999999999963 5899999999988765
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.6e-38 Score=323.27 Aligned_cols=209 Identities=27% Similarity=0.520 Sum_probs=183.6
Q ss_pred hhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCcc--------------cc
Q psy4050 158 VLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVL--------------DN 223 (472)
Q Consensus 158 ~i~~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~~--------------~~ 223 (472)
.|..|+.|+.++ ..|.. +..++.|+|||.+|+.+||++|||||||+|+|++++++..+... +.
T Consensus 107 ~I~~Dv~RT~p~-~~F~~--~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~ 183 (345)
T 2qfz_A 107 QIHIDIPRMSPE-ALILQ--PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEV 183 (345)
T ss_dssp HHHHHGGGCSCH-HHHTS--HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHH
T ss_pred HHHHhCcccCCc-cccCC--chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhh
Confidence 477888888887 55543 35778999999999999999999999999999999987542110 11
Q ss_pred cccchhhHHHHHHHHHHHhHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCC
Q psy4050 224 REHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFP 303 (472)
Q Consensus 224 ~~~~E~daF~~f~~Lm~~~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp 303 (472)
.+.+|++|||||+++|+.++++|.. +.+|+...+..++.+|+.+||+|++||.+.++++.+|+++||+++|+++||
T Consensus 184 ~~~~E~daF~~f~~lm~~~~~~y~~----~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p 259 (345)
T 2qfz_A 184 LCNIEADTYWCMSKLLDGIQDNYTF----AQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVP 259 (345)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGSST----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSC
T ss_pred hhhHHHHHHHHHHHHHHcccccccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCC
Confidence 2245999999999999998888774 567999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCcCch-hHHHHHHHHHHHHhhhhcC-CCChHHHHHHHccCCCC----CCHHHHHHHHHHhhcc
Q psy4050 304 LPDVLRIWDSLFADELRF-SFLNHICCAMILLVREDIL-AGDFPSIVKLLQHYPSS----VDIPTVISKAVELAGR 373 (472)
Q Consensus 304 ~~~vlriWD~l~~~g~~~-~~l~~i~lA~L~~~r~~Ll-~~d~~~il~~L~~~p~~----~Dv~~ll~~A~~l~~~ 373 (472)
+++++||||.+|++|+++ .|++++|+|+|...+++|+ ..|+++++++|+++|+. .|++.++++|..+...
T Consensus 260 ~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~ 335 (345)
T 2qfz_A 260 LRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFA 335 (345)
T ss_dssp HHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999765 3889999999999999999 58999999999999974 3799999999999876
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=315.45 Aligned_cols=201 Identities=19% Similarity=0.382 Sum_probs=183.0
Q ss_pred chhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCcccccccchhhHHHHHH
Q psy4050 157 PVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFT 236 (472)
Q Consensus 157 ~~i~~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~~~~~~~~E~daF~~f~ 236 (472)
..|+.|+.||++++..|..+ +.+++.|+|||.+|+.+||++|||||||+|+|+|++++ +|++|||||+
T Consensus 111 ~~I~~Dv~RT~p~~~~F~~~-~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-----------~E~~aF~~~~ 178 (334)
T 2qq8_A 111 ELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-----------DTADAFIAFS 178 (334)
T ss_dssp HHHHHHHHTSSGGGCSSSTT-STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-----------CHHHHHHHHH
T ss_pred HHHHHHHhhcCCCchhhcCC-CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-----------CHHHHHHHHH
Confidence 35788999999998877653 34678999999999999999999999999999999988 6999999999
Q ss_pred HHHHHh--HhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCChHHHHHHHHHH
Q psy4050 237 NLMGEI--RDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSL 314 (472)
Q Consensus 237 ~Lm~~~--~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp~~~vlriWD~l 314 (472)
++|+.. .++|.. +.+++...+..++.+++.++|+|++||.+.|+++.+|+++||+|+|++++|+++++||||.+
T Consensus 179 ~l~~~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~ 254 (334)
T 2qq8_A 179 NLLNKPCQMAFFRV----DHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVF 254 (334)
T ss_dssp HHHTSHHHHHHHSS----CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHH
T ss_pred HHHHhhhHHhccCC----ChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 999865 345543 56788889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcCchhHHHHHHHHHHHHhhhhcCCCChHHHHHHHccCCCCCCHHHHHHHHHHhhcccC
Q psy4050 315 FADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREK 375 (472)
Q Consensus 315 ~~~g~~~~~l~~i~lA~L~~~r~~Ll~~d~~~il~~L~~~p~~~Dv~~ll~~A~~l~~~~~ 375 (472)
|++| ..+++++|+|+|...+++|++.|+++++++|+++|..+|++.+++.|..+.-+.+
T Consensus 255 l~eg--~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~~~ 313 (334)
T 2qq8_A 255 CRDG--EEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFASIATIQMQSR 313 (334)
T ss_dssp HHHC--HHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCEET
T ss_pred HHcC--CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHHHHHHHccCcHH
Confidence 9999 5689999999999999999999999999999999988999999999999886543
No 4
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1.2e-37 Score=309.61 Aligned_cols=257 Identities=19% Similarity=0.244 Sum_probs=208.3
Q ss_pred chhHHHHHHhhccCCccchhhHHHHHH-----------HHHHHHHhhhhcCCCCCchhhhhhhccccccccCCCchhhhh
Q psy4050 94 VTKIALVVRKAAEDYAPLEEGREAHWE-----------VVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENR 162 (472)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~R~~~w~-----------~l~RlL~~~~~~np~~gYvQgmndi~~pl~~tf~~d~~i~~d 162 (472)
..|.+++.+.++.+..++++.|...|. ..|.+|.+..+.+....|.... ...-.....|+.|
T Consensus 17 ~~k~~~i~~~l~~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~~~~~~-------~~~~~~~~qI~~D 89 (292)
T 4hl4_A 17 KKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNL-------RQMSKDYQQVLLD 89 (292)
T ss_dssp HHHHHHHHHHHTSSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSCCCTTH-------HHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCchhhhh-------cccchhHHHHHHh
Confidence 346677777777777778888877663 2355555555444333332110 1112334568889
Q ss_pred hhhhhcccCCcc--cchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCcccccccchhhHHHHHHHHHH
Q psy4050 163 VRKAAEDYAPLE--EGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMG 240 (472)
Q Consensus 163 v~r~~~~~~~~~--~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~~~~~~~~E~daF~~f~~Lm~ 240 (472)
+.|+++.+..+. .+.+..++.|.|||.+|+.+||++|||||||+|+|++++++ +|++|||||+++|+
T Consensus 90 v~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-----------~e~~aF~~l~~l~~ 158 (292)
T 4hl4_A 90 VRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-----------GERLATSLVEKLST 158 (292)
T ss_dssp HHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-----------CHHHHHHHHHHHHH
T ss_pred hhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-----------CHHHHHHHHHHHHH
Confidence 999998877654 34556788999999999999999999999999999999988 69999999999998
Q ss_pred H-hHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCC-hHHHHHHHHHHhcCc
Q psy4050 241 E-IRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFP-LPDVLRIWDSLFADE 318 (472)
Q Consensus 241 ~-~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp-~~~vlriWD~l~~~g 318 (472)
. ++++|.+ +..++...+..++.+++.+||+|++||.+.++ +.+|+++||+|+|++++| +++++||||.+|++|
T Consensus 159 ~~l~~~~~~----~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g 233 (292)
T 4hl4_A 159 HHLRDFMDP----TMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACH 233 (292)
T ss_dssp TTTTGGGCS----SSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHHhccc----chHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcC
Confidence 6 3455554 45577788889999999999999999999999 569999999999999996 999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhhhcCC--CChHHHHHHHccCCCCCCHHHHHHHHHHhhcccC
Q psy4050 319 LRFSFLNHICCAMILLVREDILA--GDFPSIVKLLQHYPSSVDIPTVISKAVELAGREK 375 (472)
Q Consensus 319 ~~~~~l~~i~lA~L~~~r~~Ll~--~d~~~il~~L~~~p~~~Dv~~ll~~A~~l~~~~~ 375 (472)
+ .+++++|+|++...+++|++ .|++.++.+|+++|..+|++.++++|..+..+.+
T Consensus 234 ~--~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 234 P--LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp T--THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSC
T ss_pred C--cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 4 58999999999999999998 4889999999999988999999999999987643
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.9e-36 Score=306.13 Aligned_cols=200 Identities=17% Similarity=0.298 Sum_probs=183.4
Q ss_pred CchhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCcccccccchhhHHHHH
Q psy4050 156 DPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVF 235 (472)
Q Consensus 156 d~~i~~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~~~~~~~~E~daF~~f 235 (472)
...|..|+.|+++++..+..+.+.+++.|+|||.+|+.+||++|||||||+|+|++++++ +|++|||||
T Consensus 104 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-----------~E~~aF~~l 172 (331)
T 3qye_A 104 QHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-----------SEEEAFKML 172 (331)
T ss_dssp HHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-----------CHHHHHHHH
T ss_pred hhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-----------hHHHHHHHH
Confidence 456889999999999988887778899999999999999999999999999999999988 699999999
Q ss_pred HHHHHH--hHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCChHHHHHHHHH
Q psy4050 236 TNLMGE--IRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDS 313 (472)
Q Consensus 236 ~~Lm~~--~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp~~~vlriWD~ 313 (472)
+++|+. ++++|.+ +.+|+...+..++.+++.++|+|++||.+.|+++.+|+++||+|+|++++|++.++||||.
T Consensus 173 ~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~ 248 (331)
T 3qye_A 173 KFLMFDMGLRKQYRP----DMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDM 248 (331)
T ss_dssp HHHHTTTCGGGGGST----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHhcCchhcCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHH
Confidence 999986 4667765 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcCchhHHHHHHHHHHHHhhhhcCCC-ChHHHHHHHccCCCCC---CHHHHHHHHHHhhc
Q psy4050 314 LFADELRFSFLNHICCAMILLVREDILAG-DFPSIVKLLQHYPSSV---DIPTVISKAVELAG 372 (472)
Q Consensus 314 l~~~g~~~~~l~~i~lA~L~~~r~~Ll~~-d~~~il~~L~~~p~~~---Dv~~ll~~A~~l~~ 372 (472)
+|++|.. +++++|+|+|..++++|++. |+++++++|++.++.+ |++.++++|+.+..
T Consensus 249 ~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 249 IFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 9999954 89999999999999999985 8999999999955544 78999999998865
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=309.98 Aligned_cols=201 Identities=18% Similarity=0.388 Sum_probs=183.8
Q ss_pred CCchhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCcccccccchhhHHHH
Q psy4050 155 TDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFV 234 (472)
Q Consensus 155 ~d~~i~~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~~~~~~~~E~daF~~ 234 (472)
.+..|..|+.|+++++..+....+.+++.|+|||.+|+.+||++|||||||+|+|++++++ +|++||||
T Consensus 69 ~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-----------~e~~aF~~ 137 (310)
T 3hzj_A 69 QESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-----------PEEQAFCV 137 (310)
T ss_dssp THHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-----------CHHHHHHH
T ss_pred cHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-----------CHHHHHHH
Confidence 4456889999999999888877777899999999999999999999999999999999998 69999999
Q ss_pred HHHHHHH--hHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCChHHHHHHHH
Q psy4050 235 FTNLMGE--IRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWD 312 (472)
Q Consensus 235 f~~Lm~~--~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp~~~vlriWD 312 (472)
|+++|.. ++++|.+ +.+|+...+..++.+++.++|+|++||.+.|+++.+|+++||+|+|++++|+++++||||
T Consensus 138 l~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD 213 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRN----NFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIID 213 (310)
T ss_dssp HHHHHHTSCGGGGTHH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHH
T ss_pred HHHHHhcccccccccc----cHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999986 5677764 567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcCchhHHHHHHHHHHHHhhhhcCCCChHHHHHHHc-cCCC----CCCHHHHHHHHHHhhc
Q psy4050 313 SLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQ-HYPS----SVDIPTVISKAVELAG 372 (472)
Q Consensus 313 ~l~~~g~~~~~l~~i~lA~L~~~r~~Ll~~d~~~il~~L~-~~p~----~~Dv~~ll~~A~~l~~ 372 (472)
.+|++|. .+++++|+|++...+++|++.|+++++++|+ ++|. ..|++.+++.|..+.-
T Consensus 214 ~~l~~g~--~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~~ 276 (310)
T 3hzj_A 214 LLLCEGL--NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKV 276 (310)
T ss_dssp HHHHHCT--THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSCC
T ss_pred HHHHCCc--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhcCC
Confidence 9999994 5899999999999999999999999999997 4553 3589999999999863
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=250.10 Aligned_cols=242 Identities=14% Similarity=0.199 Sum_probs=184.5
Q ss_pred cchhHHHHHHhhccCCccchhhHHHHHHH---------HHHHHHhhhhcCCCCCc-h--hhhhhhccccccccCCCchhh
Q psy4050 93 GVTKIALVVRKAAEDYAPLEEGREAHWEV---------VERLLFLYAKMNPGQGY-V--QGMNEIIGPIYYTFATDPVLE 160 (472)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~R~~~w~~---------l~RlL~~~~~~np~~gY-v--Qgmndi~~pl~~tf~~d~~i~ 160 (472)
|++.=++|.+.++++..++.+.|+..|.+ .|++|.+|.|.|....- + +..++... +...
T Consensus 22 ~~~~k~~~~~ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~-----l~~~---- 92 (294)
T 3qwl_A 22 GVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLD-----VLHA---- 92 (294)
T ss_dssp CHHHHHHHHHHTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHH-----HHHH----
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHH-----HHHh----
Confidence 45556788999999999999999999998 48899999888876411 1 11111100 0000
Q ss_pred hhhhhhhcccCCcccchhhHHHHHHHHHHHHHHh----------CCCCCccCChhHHHHHHHHhhcCCCcccccccchhh
Q psy4050 161 NRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKM----------NPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEAD 230 (472)
Q Consensus 161 ~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~----------~P~igY~QGM~~I~a~Ll~~~~~d~~~~~~~~~E~d 230 (472)
.++.|.... ..+. ....+..|... +|+ .++|||..|++++++++. +|+|
T Consensus 93 ~~~~r~I~~------~tP~----~~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~----------~E~d 151 (294)
T 3qwl_A 93 LKVVRFVSD------ATPQ----AEVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVE----------DSVD 151 (294)
T ss_dssp HHHTTSCCT------TSCH----HHHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCC----------SHHH
T ss_pred hhhhhhhhc------cCch----HHHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhC----------CHHH
Confidence 000011100 0000 11122233322 122 245999999999998764 6999
Q ss_pred HHHHHHHHHHHhHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCChHHHHHH
Q psy4050 231 CFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRI 310 (472)
Q Consensus 231 aF~~f~~Lm~~~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp~~~vlri 310 (472)
|||||+++|++++++|.+ +.+|+... ++.+++.+||+|++||.+.|+.+.+++.+||+++|+++||+++++||
T Consensus 152 AFW~f~~Lm~~l~~~f~~----~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRl 224 (294)
T 3qwl_A 152 CYWITRRFVNQLNTKYRD----SLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRV 224 (294)
T ss_dssp HHHHHHHHHHHHHTTTTT----TGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC----ChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHH
Confidence 999999999999888886 56787654 48999999999999999999988888779999999999999999999
Q ss_pred HHHHhcCcCchhHHHHHHHHHHHHhhhhcCCCCh-HHHHHHHccCCCCCCHHHHHHHHHHhhccc
Q psy4050 311 WDSLFADELRFSFLNHICCAMILLVREDILAGDF-PSIVKLLQHYPSSVDIPTVISKAVELAGRE 374 (472)
Q Consensus 311 WD~l~~~g~~~~~l~~i~lA~L~~~r~~Ll~~d~-~~il~~L~~~p~~~Dv~~ll~~A~~l~~~~ 374 (472)
||.+|++| ..+++++|+|||..++++|++.++ ++++++|+++| ..|++.++++|..+..+.
T Consensus 225 WD~~~~~~--~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~ 286 (294)
T 3qwl_A 225 WDKVVSGS--CKILVFVAVEILLTFKIKVMALNSAEKITKFLENIP-QDSSDAIVSKAIDLWHKH 286 (294)
T ss_dssp HHHHHTTC--STHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCC-STTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCC-cccHHHHHHHHHHHHHHc
Confidence 99999988 568999999999999999999877 89999999999 789999999999988653
No 8
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=98.63 E-value=1.8e-08 Score=103.75 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=74.1
Q ss_pred ccchhhhhhhhcccccccchhhhhhccchhhhh-----------------------------------------------
Q psy4050 381 LYPKKLITHCALSLLCLPVYTAVYYTGDLIADE----------------------------------------------- 413 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~s~~----------------------------------------------- 413 (472)
.+.-+|+ ..++..++|..+++++||-.|+..
T Consensus 231 ~f~~rW~--l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 308 (396)
T 1fkm_A 231 QFAFRWM--NCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMT 308 (396)
T ss_dssp HHHHHHH--HTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred HHHHHHH--HHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccc
Confidence 4566777 556667999999999999888865
Q ss_pred --------------hhhhhHHHHHHHHHHHHHHHHhcCChHHHHHHHhcCCCC----CCHHHHHHHHHHhhhh
Q psy4050 414 --------------LRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSS----VDIPTVISKAVELAGR 468 (472)
Q Consensus 414 --------------~~~~fl~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~p~~----~d~~~~~~~a~~~~~~ 468 (472)
....|+.++|+||+...|++|++.||+++|++||++|+. .||++|+++|++|+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~ 381 (396)
T 1fkm_A 309 PNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSL 381 (396)
T ss_dssp --------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHH
Confidence 114789999999999999999999999999999999983 6999999999999875
No 9
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=98.39 E-value=2.1e-07 Score=93.87 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=73.7
Q ss_pred ccchhhhhhhhcccccccchhhhhhccchhhhhhhh-hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHhcCCCC----CC
Q psy4050 381 LYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRF-SFLNHICCAMILLVREDILA-GDFPSIVKLLQHYPSS----VD 454 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~s~~~~~-~fl~~~~~~~~~~~~~~~l~-~~~~~~~~~l~~~p~~----~d 454 (472)
.+.-+|+ ..++..++|..+++++||-.++..... .|+.++|+||+...|++||+ +||++++++||++|+. .|
T Consensus 244 ~f~~~W~--~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~d 321 (345)
T 2qfz_A 244 QFAFRWM--NNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDED 321 (345)
T ss_dssp HHHHHHH--HTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHH
T ss_pred hHHHHHH--HHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhH
Confidence 3566777 556667999999999999999987665 48899999999999999996 6999999999999995 48
Q ss_pred HHHHHHHHHHhhhh
Q psy4050 455 IPTVISKAVELAGR 468 (472)
Q Consensus 455 ~~~~~~~a~~~~~~ 468 (472)
|+.||++|+.|+..
T Consensus 322 i~~ll~~A~~l~~~ 335 (345)
T 2qfz_A 322 ISLLLAEAYRLKFA 335 (345)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 10
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=98.30 E-value=6.5e-07 Score=88.25 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=67.7
Q ss_pred hhhhhhhcccccccchhhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHhcCCh-HHHHHHHhcCCCCCCHHHHHHHHH
Q psy4050 385 KLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDF-PSIVKLLQHYPSSVDIPTVISKAV 463 (472)
Q Consensus 385 ~~~~~~~~~~~~~p~~~~l~~~~~~~s~~~~~~fl~~~~~~~~~~~~~~~l~~~~-~~~~~~l~~~p~~~d~~~~~~~a~ 463 (472)
+|. ..++..++|..+++++||-.|+ ....++.+||+||+...|++|++.|+ .+++++|||+|+ .|++.|+++|.
T Consensus 206 rWf--l~lF~~~~p~~~vlRlWD~~~~--~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~-~di~~ll~~A~ 280 (294)
T 3qwl_A 206 LWF--KRCFAGCLPESSLQRVWDKVVS--GSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ-DSSDAIVSKAI 280 (294)
T ss_dssp HHH--TSTTTTTSCHHHHHHHHHHHHT--TCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS-TTHHHHHHHHH
T ss_pred HHH--HHHhccCCCHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc-ccHHHHHHHHH
Confidence 777 4556689999999999999999 34678889999999999999999977 777999999998 59999999999
Q ss_pred Hhh
Q psy4050 464 ELA 466 (472)
Q Consensus 464 ~~~ 466 (472)
.|.
T Consensus 281 ~l~ 283 (294)
T 3qwl_A 281 DLW 283 (294)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 11
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=98.15 E-value=2.5e-06 Score=85.67 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=72.1
Q ss_pred ccchhhhhhhhcccccccchhhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHhcCChHHHHHHHhcCCCCCCHHHHHH
Q psy4050 381 LYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVIS 460 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~s~~~~~~fl~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~p~~~d~~~~~~ 460 (472)
.+..+|+ -.++..++|..+++++||-.++.. ..++.++|+|++...|++|++.||.+++++|+++|..+|++.|++
T Consensus 228 ~~~~~W~--ltlF~~~lp~~~~lriWD~~l~eg--~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~~ 303 (334)
T 2qq8_A 228 IYLIDWI--FTLYSKSLPLDLACRIWDVFCRDG--EEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFA 303 (334)
T ss_dssp GTHHHHH--HTTTTTTSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHHH
T ss_pred chHHHHH--HHHhcccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHHH
Confidence 4566777 455667999999999999888864 467889999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q psy4050 461 KAVELA 466 (472)
Q Consensus 461 ~a~~~~ 466 (472)
+|.+++
T Consensus 304 ~a~~l~ 309 (334)
T 2qq8_A 304 SIATIQ 309 (334)
T ss_dssp HHHHCC
T ss_pred HHHHcc
Confidence 999876
No 12
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=97.94 E-value=1.1e-05 Score=79.32 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=69.9
Q ss_pred ccchhhhhhhhccccccc-chhhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHhcCCCCCCHHH
Q psy4050 381 LYPKKLITHCALSLLCLP-VYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAG--DFPSIVKLLQHYPSSVDIPT 457 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p-~~~~l~~~~~~~s~~~~~~fl~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~p~~~d~~~ 457 (472)
.+.-+|. -.++..++| ..+++++||-.++... .++.++|+|++++.|++|++. |+++++++|+++|..+|++.
T Consensus 202 ~~~~~W~--ltlF~~~l~~~~~~~rlWD~~l~~g~--~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~ 277 (292)
T 4hl4_A 202 IFALSWL--ITWFGHVLSDFRHVVRLYDFFLACHP--LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYET 277 (292)
T ss_dssp GGGHHHH--HTTTTTTSCCHHHHHHHHHHHHHSCT--THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHH
T ss_pred chHHHHH--HHHHhhhcCcHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHH
Confidence 5667777 345556775 8788888888888753 588889999999999999995 99999999999998899999
Q ss_pred HHHHHHHhhh
Q psy4050 458 VISKAVELAG 467 (472)
Q Consensus 458 ~~~~a~~~~~ 467 (472)
|+++|..|..
T Consensus 278 li~~A~~l~~ 287 (292)
T 4hl4_A 278 LISRAGDLFV 287 (292)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 13
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=97.81 E-value=1.9e-05 Score=78.95 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=71.0
Q ss_pred ccchhhhhhhhcccccccchhhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHhcCCCCC---CHH
Q psy4050 381 LYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAG-DFPSIVKLLQHYPSSV---DIP 456 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~s~~~~~~fl~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~p~~~---d~~ 456 (472)
.+..+|. ..++..++|..+++++||-.++.... ++.++|+|++...|++|++. |+.+++++|+++|++. |++
T Consensus 223 ~~~~~W~--l~lF~~~lp~~~~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~ 298 (331)
T 3qye_A 223 LYAAPWF--LTMFASQFPLGFVARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQME 298 (331)
T ss_dssp GTSHHHH--HSTTTTTSCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHH--HHHhhhhCCHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHH
Confidence 5677787 45566789998889999988887544 78999999999999999987 9999999999987755 899
Q ss_pred HHHHHHHHhhh
Q psy4050 457 TVISKAVELAG 467 (472)
Q Consensus 457 ~~~~~a~~~~~ 467 (472)
.++++|++++.
T Consensus 299 ~li~~A~~l~~ 309 (331)
T 3qye_A 299 KTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhCCc
Confidence 99999998875
No 14
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=97.53 E-value=3.6e-05 Score=76.15 Aligned_cols=82 Identities=18% Similarity=0.391 Sum_probs=68.7
Q ss_pred ccchhhhhhhhcccccccchhhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHhcCChHHHHHHHh-cCCC----CCCH
Q psy4050 381 LYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQ-HYPS----SVDI 455 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~s~~~~~~fl~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~p~----~~d~ 455 (472)
.+..+|. ..++..++|..+++++||-.++... .++..+|+|++...|++|++.||.+++++|+ ++|. +.|+
T Consensus 189 ~~~~~W~--ltlF~~~lp~~~~~riwD~~l~~g~--~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~ 264 (310)
T 3hzj_A 189 MYASQWF--LTLFTAKFPLCMVFHIIDLLLCEGL--NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENA 264 (310)
T ss_dssp GTSHHHH--HHTTTTTSCHHHHHHHHHHHHHHCT--THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHH
T ss_pred HHHHHHH--HHHHhccCCHHHHHHHHHHHHHCCc--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccH
Confidence 5677787 4555678999888999998888654 5688899999999999999999999999998 4453 4699
Q ss_pred HHHHHHHHHhh
Q psy4050 456 PTVISKAVELA 466 (472)
Q Consensus 456 ~~~~~~a~~~~ 466 (472)
+.|+++|..++
T Consensus 265 ~~ll~~A~~l~ 275 (310)
T 3hzj_A 265 RRLMEQACNIK 275 (310)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhcC
Confidence 99999999885
No 15
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.81 E-value=54 Score=25.81 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHhcC-ChHHHHHHHhcCCC---CCCHHHHHHHHHHhh
Q psy4050 418 FLNHICCAMILLVREDILAG-DFPSIVKLLQHYPS---SVDIPTVISKAVELA 466 (472)
Q Consensus 418 fl~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~p~---~~d~~~~~~~a~~~~ 466 (472)
.++-+++|+.-+.|... +. -+...++.|..||+ .+|+..|++.+..+.
T Consensus 41 GLIq~Ava~~h~~~gn~-a~~ll~~a~~~L~~~~~~~~gidv~~L~~~~~~~l 92 (94)
T 2cwy_A 41 GVILLAAALHQRRLGRP-GLRNLRKAEARLEGLPCPLMGLDWRSLLQEARRRL 92 (94)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTTCCSSBTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHh
Confidence 44445665555555555 44 78899999999997 699999999887653
Done!