RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4050
(472 letters)
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p. Probable
Rab-GAPs. Widespread domain present in Gyp6 and Gyp7,
thereby giving rise to the notion that it performs a
GTP-activator activity on Rab-like GTPases.
Length = 216
Score = 117 bits (295), Expect = 2e-30
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 182 EVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGE 241
E + R+L YA NP GY QGMN + P+ E D F+ LM
Sbjct: 73 ESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM----------EDEEDAFWCLVKLMER 122
Query: 242 IRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQE 301
F SG+ + +L++ +K+ D ++++ L + + P Y+ RW L ++E
Sbjct: 123 YGPNFYL---PDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARE 179
Query: 302 FPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDIL 340
PL VLRIWD LFA+ FL + A++ L R+ +L
Sbjct: 180 LPLEIVLRIWDVLFAE--GSDFLFRVALALLKLHRDVLL 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identification of a
TBC domain in GYP6_YEAST and GYP7_YEAST, which are
GTPase activator proteins of yeast Ypt6 and Ypt7,
implies that these domains are GTPase activator proteins
of Rab-like small GTPases.
Length = 206
Score = 112 bits (281), Expect = 1e-28
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 182 EVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLM-G 240
+ + R+L Y+ NP GY QGMN I P+ E + F+ F +L+
Sbjct: 63 QQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLD----------EEEAFWCFVSLLEY 112
Query: 241 EIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQ 300
+RDFF+ S G+ R + + +K+ D E+++ L + L P ++ +W L ++
Sbjct: 113 LLRDFFLPSF----PGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFAR 168
Query: 301 EFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDIL 340
E PL VLR+WD +F + A++ R+++L
Sbjct: 169 ELPLETVLRLWDLFLE-GGKFFLF-RVALAILKRFRKELL 206
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 120 EVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTF 153
+ + R+L Y+ NP GY QGMN I P+
Sbjct: 63 QQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVV 96
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 101 bits (253), Expect = 5e-23
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 21/219 (9%)
Query: 182 EVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLM-- 239
E + R+L Y+ NP GYVQGMN + P+ + E F+ L+
Sbjct: 283 ENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLES----------EEQAFWCLVKLLKN 332
Query: 240 GEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLS 299
+ +F+K+L SG++R + L+ +++ D E++E L + ++FRW L
Sbjct: 333 YGLPGYFLKNL----SGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFV 388
Query: 300 QEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFP-SIVKLLQHYPSSV 358
+EFPL LRIWD LF + F + A++ L+R+ +L D + LL+
Sbjct: 389 REFPLEYALRIWDCLFLEGSSMLF--QLALAILKLLRDKLLKLDSDELLDLLLKQLFLHS 446
Query: 359 DIPTVISKA-VELAGREKVHH-ISLYPKKLITHCALSLL 395
S + I KK IT
Sbjct: 447 GKEAWSSILKFRHGTDRDILLFIEDLLKKDITPTRYRSE 485
Score = 50.2 bits (120), Expect = 2e-06
Identities = 41/219 (18%), Positives = 65/219 (29%), Gaps = 22/219 (10%)
Query: 155 TDPVLENRVRKAAEDYAPLE--EGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIY 212
T P L R++ + + P ++ L ++N + E Y
Sbjct: 118 TSPELPKRLKDSLPTHLPEASSTEKDFSSFKGSSSLNSNPELNKEINELSLKEEPQKLRY 177
Query: 213 YTFATDPVLDNREHAEADCFFVFT--NLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQ 270
Y A D + + F L IR L L +
Sbjct: 178 YELAADKLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEF-LLGIGFDLDKNP 236
Query: 271 KDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLN----- 325
E L+ P + LS+ FP + + S+ A+ LR L
Sbjct: 237 GLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRR-VLKAYSLY 295
Query: 326 ----------HICCAMILLVREDILAGDFPSIVKLLQHY 354
+ A +LLV E F +VKLL++Y
Sbjct: 296 NPEVGYVQGMNFLAAPLLLVLE-SEEQAFWCLVKLLKNY 333
>gnl|CDD|166679 PLN03039, PLN03039, ethanolaminephosphotransferase; Provisional.
Length = 337
Score = 31.9 bits (72), Expect = 0.65
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 339 ILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLP 398
+L D+ S + L+ +YP V + T ++ L GR + H+ PK L T+ +SLL LP
Sbjct: 217 VLIWDYLSPIDLIANYPHLVVLGTGLAFGF-LVGRMILAHLCDEPKGLKTNMCMSLLYLP 275
Query: 399 VYTAVYYTGDL 409
A T L
Sbjct: 276 FALANALTARL 286
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model
represents a family of bacterial oxidoreductases with
covalently linked FAD, closely related to two different
eukaryotic oxidases, L-gulonolactone oxidase (EC
1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase
(EC 1.1.3.37) from Saccharomyces cerevisiae.
Length = 419
Score = 29.1 bits (65), Expect = 6.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 70 RKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAEDYA-PLEEGREAHWEVVE 123
R RL+R +T + +SS V R V VR +Y P E GR+A EV++
Sbjct: 256 RPRLNRLMT-NMMSSETVVDRAYKVFATQRKVRFNEMEYHLPRENGRKALQEVID 309
>gnl|CDD|198350 cd07772, FGGY_NaCK_like, Novosphingobium aromaticivorans
carbohydrate kinase-like proteins; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of uncharacterized bacterial
proteins with similarity to carbohydrate kinase from
Novosphingobium aromaticivorans (NaCK). These proteins
may catalyze the transfer of a phosphate group from ATP
to their carbohydrate substrates. They belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 419
Score = 28.8 bits (65), Expect = 6.3
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 241 EIRDFFIKSLDETESGINRLMSKLNQTM-----KQKDLEVWEKLYAIELHPQYYSFR 292
R FF E+G RL LN K+ + + + I +PQY+++R
Sbjct: 106 AKRGFF------AETGSPRLPGGLNAGRQLYWLKETKPDAFARARYILHYPQYWAWR 156
>gnl|CDD|166000 PLN02359, PLN02359, ethanolaminephosphotransferase.
Length = 389
Score = 28.2 bits (63), Expect = 9.5
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 339 ILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLP 398
+L D+ S L+++YP V + T ++ L GR + H+ PK L T+ +SLL LP
Sbjct: 269 VLIWDYLSPSDLMRNYPHLVVLGTGLAFGF-LVGRMILAHLCDEPKGLKTNMCMSLLYLP 327
Query: 399 -----VYTAVYYTGDLIADEL 414
TA G + DE
Sbjct: 328 FAIANALTARLNDGVPLVDEF 348
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,885,374
Number of extensions: 2516370
Number of successful extensions: 1997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1989
Number of HSP's successfully gapped: 18
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.3 bits)