RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4050
(472 letters)
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 94.9 bits (235), Expect = 2e-23
Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 38/215 (17%)
Query: 255 SGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSL 314
GI R + L+Q +K+ D +++ + ++FRW+ LL +EF + V+R+WD+
Sbjct: 3 PGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTY 62
Query: 315 FADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGRE 374
++ + ++ + +
Sbjct: 63 LSETSQEVTSSYSMSSNDIKPPVTPTEPR------------------------------- 91
Query: 375 KVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDI 434
S + L + F +C A ++ + +
Sbjct: 92 ---VASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL 148
Query: 435 LAGDFPSIVKLLQHYP----SSVDIPTVISKAVEL 465
+ DF + LQ+ P + DI ++S+A
Sbjct: 149 MEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIW 183
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 65.7 bits (159), Expect = 4e-13
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 180 HWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPV------------------L 221
++R+L+L+A +P GYVQG+N+++ P + TF T+ +
Sbjct: 108 VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVD 167
Query: 222 DNREHAEADCFFVFTNLMGEIRDFFI 247
+ EAD F+ T L+ +I D +I
Sbjct: 168 EQITDLEADTFWCLTKLLEQITDNYI 193
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 28.0 bits (61), Expect = 2.6
Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 6/150 (4%)
Query: 200 YVQGMNEIIGPIYYTFATD-PVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGIN 258
+ E +G D P L RE D F+N + +++E++
Sbjct: 167 DLVKNVEKLGVKALFVTVDAPSLGQRE---KDMKLKFSNTKAGPKAMKKTNVEESQGASR 223
Query: 259 RLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADE 318
L ++ ++ KD+E +K + + + + ++ + + +
Sbjct: 224 ALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAE--IGVSGVVLSNHGGRQL 281
Query: 319 LRFSFLNHICCAMILLVREDILAGDFPSIV 348
+ + ++ + L V
Sbjct: 282 DFSRAPIEVLAETMPILEQRNLKDKLEVFV 311
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 27.5 bits (60), Expect = 3.5
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 10/101 (9%)
Query: 98 ALVVRKAAEDYAPLEEG-REAHWEVVERLLFLYAKMNPGQGYVQG--------MNEIIGP 148
+V AE+Y H V+ RL L + N +
Sbjct: 117 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176
Query: 149 IYYTFATDPVLENRVRKAAEDYAPLEEGREAHW-EVVERLL 188
+ P + +A YA V+ LL
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase)
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 26.2 bits (58), Expect = 3.8
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 219 PVLDNREHAEA-DCFFVFTNLMGE---------IRDFFIKSLDETESGINRLMSKLNQTM 268
P + E E + F+ ++ G IRDF K + + + + K+ + +
Sbjct: 39 PADEAPETTEGYEGFYHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGL 98
Query: 269 KQKDLEVWEKLYAIELHPQYY 289
+ + + YY
Sbjct: 99 H------PDCYIELVIEDSYY 113
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 25.6 bits (56), Expect = 6.6
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 13/72 (18%)
Query: 210 PIYYTFATDPVLDNREHAEADCFFVFTNL-MGEIRDFFIK----SLDETESGINRLMSKL 264
I F PV DN V+ + I F S + ++G+ RL +
Sbjct: 54 AIKEFFLNPPVTDNYN-------LVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAI 106
Query: 265 NQTMKQKDLEVW 276
KQ LE W
Sbjct: 107 KSG-KQSTLESW 117
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 25.9 bits (57), Expect = 8.0
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 237 NLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEV 275
+ G+ + I++++E + + +N+ + KD
Sbjct: 27 EMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAA 65
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Length = 197
Score = 26.0 bits (57), Expect = 8.3
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 238 LMGEIRDFF---IKSLDETESGINRLMSKLNQTMKQKDLEV 275
+ I++F I+S D+ + +N++ + + + D +
Sbjct: 37 IADNIKNFQGKTIRSFDDAMASLNKITANPAMKINKADRDA 77
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus
abyssi [TaxId: 29292]}
Length = 149
Score = 25.5 bits (56), Expect = 9.4
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 47 RRGLGVTKQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAE 106
+G+ + Y GGRK + ++ R+ L + A V K
Sbjct: 64 DGPVGIERLRTYY--------GGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 115
Query: 107 D 107
Sbjct: 116 K 116
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 25.3 bits (55), Expect = 9.8
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 241 EIRDFFIKSLDETESGINRLMSKLNQTMK---QKDLEVWEKL 279
E+ F +E I + +L+++ + Q L+ + K+
Sbjct: 88 ELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,808,600
Number of extensions: 86096
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 13
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)